AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0329740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0329740 MtrunA17_Chr1g0193801 70.548 146 1 1 71 174 45 190 6.56e-60 192
Msa0329740 MtrunA17_Chr7g0270891 94.667 75 4 0 71 145 45 119 6.72e-46 156
Msa0329740 MtrunA17_Chr1g0193371 94.595 74 4 0 71 144 45 118 2.47e-45 154
Msa0329740 MtrunA17_Chr4g0058631 86.111 72 10 0 71 142 45 116 3.27e-40 141
Msa0329740 MtrunA17_Chr2g0328771 75.000 80 20 0 71 150 53 132 3.79e-38 134
Msa0329740 MtrunA17_Chr1g0211161 77.333 75 17 0 71 145 46 120 4.10e-38 132
Msa0329740 MtrunA17_Chr3g0117091 78.667 75 16 0 71 145 45 119 6.18e-38 135
Msa0329740 MtrunA17_Chr4g0032401 72.619 84 23 0 71 154 50 133 1.66e-37 133
Msa0329740 MtrunA17_Chr3g0088461 80.822 73 14 0 71 143 55 127 2.46e-37 133
Msa0329740 MtrunA17_Chr7g0271241 89.231 65 7 0 71 135 45 109 3.99e-36 130
Msa0329740 MtrunA17_Chr7g0247131 73.973 73 19 0 71 143 11 83 4.10e-36 128
Msa0329740 MtrunA17_Chr2g0309911 73.611 72 19 0 71 142 44 115 6.20e-36 129
Msa0329740 MtrunA17_Chr8g0342521 77.778 72 16 0 71 142 45 116 1.30e-35 129
Msa0329740 MtrunA17_Chr1g0203411 75.676 74 18 0 71 144 45 118 1.47e-35 127
Msa0329740 MtrunA17_Chr8g0342541 76.389 72 17 0 71 142 45 116 2.65e-35 128
Msa0329740 MtrunA17_Chr7g0274581 63.953 86 31 0 71 156 45 130 2.72e-35 124
Msa0329740 MtrunA17_Chr2g0330041 66.667 84 28 0 71 154 45 128 2.72e-35 129
Msa0329740 MtrunA17_Chr8g0342481 77.778 72 16 0 71 142 46 117 3.40e-35 129
Msa0329740 MtrunA17_Chr8g0349261 76.389 72 17 0 71 142 47 118 3.62e-35 126
Msa0329740 MtrunA17_Chr3g0131121 57.000 100 43 0 71 170 45 144 1.03e-34 125
Msa0329740 MtrunA17_Chr1g0187761 67.059 85 28 0 71 155 45 129 1.05e-34 124
Msa0329740 MtrunA17_Chr4g0042671 70.115 87 26 0 56 142 30 116 1.52e-34 127
Msa0329740 MtrunA17_Chr8g0387421 69.737 76 23 0 69 144 43 118 2.37e-34 124
Msa0329740 MtrunA17_Chr4g0044421 70.667 75 22 0 71 145 45 119 3.05e-34 121
Msa0329740 MtrunA17_Chr4g0022931 53.153 111 45 2 71 174 46 156 3.08e-34 123
Msa0329740 MtrunA17_Chr5g0395281 60.417 96 38 0 49 144 23 118 3.89e-34 124
Msa0329740 MtrunA17_Chr3g0115821 72.973 74 20 0 71 144 45 118 7.44e-34 124
Msa0329740 MtrunA17_Chr7g0261281 60.000 90 36 0 71 160 45 134 9.87e-34 122
Msa0329740 MtrunA17_Chr5g0435101 69.444 72 22 0 71 142 44 115 1.34e-33 120
Msa0329740 MtrunA17_Chr1g0167661 73.611 72 19 0 71 142 45 116 1.36e-33 121
Msa0329740 MtrunA17_Chr4g0070641 48.673 113 52 1 71 177 45 157 1.92e-33 118
Msa0329740 MtrunA17_Chr7g0217741 66.667 87 29 0 56 142 30 116 1.97e-33 122
Msa0329740 MtrunA17_Chr4g0039971 72.973 74 20 0 71 144 46 119 2.17e-33 123
Msa0329740 MtrunA17_Chr8g0385321 69.333 75 23 0 71 145 45 119 3.58e-33 121
Msa0329740 MtrunA17_Chr4g0048511 72.222 72 20 0 71 142 46 117 4.16e-33 122
Msa0329740 MtrunA17_Chr1g0167691 72.222 72 20 0 71 142 45 116 4.68e-33 119
Msa0329740 MtrunA17_Chr2g0323411 75.000 72 18 0 71 142 45 116 5.04e-33 121
Msa0329740 MtrunA17_Chr4g0070611 48.718 117 50 1 71 187 45 151 5.92e-33 120
Msa0329740 MtrunA17_Chr6g0453471 64.045 89 32 0 56 144 30 118 6.48e-33 122
Msa0329740 MtrunA17_Chr2g0281071 72.222 72 20 0 71 142 46 117 7.10e-33 121
Msa0329740 MtrunA17_Chr2g0323351 65.385 78 27 0 71 148 45 122 7.64e-33 119
Msa0329740 MtrunA17_Chr4g0022901 71.831 71 20 0 71 141 46 116 1.01e-32 119
Msa0329740 MtrunA17_Chr5g0410961 70.833 72 21 0 71 142 45 116 1.08e-32 120
Msa0329740 MtrunA17_Chr6g0470971 54.783 115 48 1 69 179 45 159 1.61e-32 119
Msa0329740 MtrunA17_Chr1g0203441 63.636 88 32 0 69 156 44 131 1.95e-32 118
Msa0329740 MtrunA17_Chr3g0103281 75.000 72 18 0 71 142 45 116 1.96e-32 120
Msa0329740 MtrunA17_Chr8g0346561 58.242 91 37 1 69 159 43 132 2.47e-32 119
Msa0329740 MtrunA17_Chr7g0228891 71.233 73 21 0 71 143 45 117 4.23e-32 117
Msa0329740 MtrunA17_Chr4g0037141 69.444 72 22 0 71 142 45 116 4.59e-32 118
Msa0329740 MtrunA17_Chr5g0397231 75.000 68 17 0 69 136 43 110 7.86e-32 118
Msa0329740 MtrunA17_Chr7g0275911 64.474 76 27 0 71 146 45 120 8.02e-32 116
Msa0329740 MtrunA17_Chr3g0110351 68.919 74 23 0 71 144 45 118 9.51e-32 117
Msa0329740 MtrunA17_Chr4g0057031 70.833 72 21 0 71 142 45 116 2.28e-31 115
Msa0329740 MtrunA17_Chr5g0434571 68.919 74 23 0 71 144 81 154 2.40e-31 117
Msa0329740 MtrunA17_Chr7g0228231 60.000 85 34 0 71 155 47 131 2.62e-31 114
Msa0329740 MtrunA17_Chr3g0099131 70.270 74 22 0 71 144 74 147 3.11e-31 119
Msa0329740 MtrunA17_Chr4g0055981 54.902 102 35 1 71 172 88 178 3.52e-31 114
Msa0329740 MtrunA17_Chr4g0022911 66.197 71 24 0 71 141 46 116 8.42e-31 114
Msa0329740 MtrunA17_Chr2g0311221 66.667 87 29 0 71 157 47 133 1.11e-30 115
Msa0329740 MtrunA17_Chr4g0068061 62.105 95 34 2 49 142 23 116 1.19e-30 115
Msa0329740 MtrunA17_Chr8g0354661 68.000 75 24 0 69 143 68 142 2.82e-30 117
Msa0329740 MtrunA17_Chr1g0152011 67.105 76 25 0 71 146 46 121 3.56e-30 114
Msa0329740 MtrunA17_Chr5g0400821 60.714 84 33 0 69 152 44 127 4.94e-30 113
Msa0329740 MtrunA17_Chr6g0487491 44.286 140 68 3 69 199 44 182 5.31e-30 112
Msa0329740 MtrunA17_Chr5g0417821 70.423 71 21 0 72 142 41 111 1.03e-29 112
Msa0329740 MtrunA17_Chr1g0151941 60.811 74 29 0 69 142 44 117 1.10e-29 110
Msa0329740 MtrunA17_Chr1g0186061 57.303 89 38 0 71 159 53 141 1.34e-29 110
Msa0329740 MtrunA17_Chr8g0343831 62.667 75 28 0 71 145 41 115 2.13e-29 110
Msa0329740 MtrunA17_Chr3g0135311 64.865 74 26 0 69 142 44 117 2.16e-29 112
Msa0329740 MtrunA17_Chr3g0080861 64.384 73 26 0 71 143 70 142 2.44e-29 114
Msa0329740 MtrunA17_Chr4g0028311 66.216 74 25 0 69 142 44 117 2.69e-29 111
Msa0329740 MtrunA17_Chr7g0217221 50.526 95 47 0 69 163 43 137 3.44e-29 110
Msa0329740 MtrunA17_Chr7g0240821 53.061 98 43 1 71 168 34 128 4.46e-29 108
Msa0329740 MtrunA17_Chr6g0450101 63.514 74 27 0 71 144 47 120 4.70e-29 108
Msa0329740 MtrunA17_Chr1g0194951 67.089 79 25 1 65 142 38 116 5.37e-29 111
Msa0329740 MtrunA17_Chr3g0121241 66.667 72 24 0 71 142 75 146 8.02e-29 110
Msa0329740 MtrunA17_Chr4g0022881 67.143 70 23 0 71 140 45 114 8.92e-29 108
Msa0329740 MtrunA17_Chr4g0060721 55.556 90 39 1 71 160 46 134 1.44e-28 109
Msa0329740 MtrunA17_Chr1g0168661 59.551 89 32 1 71 159 54 138 1.57e-28 108
Msa0329740 MtrunA17_Chr1g0154031 65.753 73 25 0 71 143 109 181 2.70e-28 110
Msa0329740 MtrunA17_Chr4g0054391 70.149 67 20 0 69 135 44 110 6.01e-28 107
Msa0329740 MtrunA17_Chr6g0452271 63.514 74 27 0 69 142 43 116 1.18e-27 107
Msa0329740 MtrunA17_Chr1g0209661 62.162 74 28 0 71 144 60 133 1.40e-27 106
Msa0329740 MtrunA17_Chr4g0022891 65.217 69 24 0 71 139 45 113 1.83e-27 105
Msa0329740 MtrunA17_Chr3g0092401 60.811 74 29 0 71 144 46 119 3.26e-27 105
Msa0329740 MtrunA17_Chr4g0030881 60.811 74 29 0 72 145 48 121 3.34e-27 104
Msa0329740 MtrunA17_Chr2g0327351 67.647 68 22 0 69 136 44 111 3.38e-27 105
Msa0329740 MtrunA17_Chr7g0254411 50.515 97 46 1 71 165 45 141 3.40e-27 106
Msa0329740 MtrunA17_Chr1g0180391 64.384 73 26 0 71 143 52 124 3.48e-27 103
Msa0329740 MtrunA17_Chr4g0072751 43.411 129 53 2 69 180 44 169 4.10e-27 106
Msa0329740 MtrunA17_Chr2g0322521 68.493 73 23 0 71 143 62 134 2.16e-26 105
Msa0329740 MtrunA17_Chr1g0194301 60.811 74 29 0 71 144 66 139 2.95e-26 102
Msa0329740 MtrunA17_Chr2g0327821 57.143 77 33 0 70 146 38 114 3.15e-26 101
Msa0329740 MtrunA17_Chr6g0453211 62.500 80 30 0 71 150 45 124 3.30e-26 103
Msa0329740 MtrunA17_Chr1g0194291 60.811 74 29 0 71 144 54 127 4.09e-26 102
Msa0329740 MtrunA17_Chr7g0264641 59.459 74 30 0 69 142 44 117 7.26e-26 101
Msa0329740 MtrunA17_Chr7g0220341 56.579 76 33 0 71 146 60 135 4.21e-25 99.4
Msa0329740 MtrunA17_Chr5g0434931 44.330 97 54 0 71 167 68 164 6.20e-25 99.4
Msa0329740 MtrunA17_Chr1g0192411 60.000 75 30 0 69 143 43 117 6.77e-25 101
Msa0329740 MtrunA17_Chr5g0434831 56.944 72 31 0 71 142 40 111 1.13e-24 96.3
Msa0329740 MtrunA17_Chr8g0360111 60.000 70 28 0 69 138 56 125 1.35e-24 97.8
Msa0329740 MtrunA17_Chr5g0434911 56.944 72 31 0 71 142 54 125 2.47e-24 97.4
Msa0329740 MtrunA17_Chr5g0434901 47.917 96 50 0 72 167 7 102 3.16e-24 93.2
Msa0329740 MtrunA17_Chr7g0269831 69.444 72 22 0 71 142 45 116 3.71e-24 98.2
Msa0329740 MtrunA17_Chr7g0229101 59.420 69 28 0 71 139 5 73 5.11e-24 95.1
Msa0329740 MtrunA17_Chr7g0229131 55.556 72 32 0 71 142 5 76 1.79e-23 92.8
Msa0329740 MtrunA17_Chr5g0434841 52.703 74 35 0 69 142 51 124 4.18e-23 95.1
Msa0329740 MtrunA17_Chr7g0228991 54.930 71 32 0 72 142 63 133 6.19e-23 93.6
Msa0329740 MtrunA17_Chr3g0093811 54.878 82 33 1 67 144 7 88 1.10e-22 92.8
Msa0329740 MtrunA17_Chr8g0334881 54.545 77 34 1 68 143 40 116 2.95e-22 92.8
Msa0329740 MtrunA17_Chr4g0068921 62.162 74 28 0 71 144 57 130 3.08e-22 90.1
Msa0329740 MtrunA17_Chr5g0440781 53.521 71 32 1 71 140 45 115 5.87e-22 89.4
Msa0329740 MtrunA17_Chr2g0293911 62.162 74 28 0 71 144 57 130 7.80e-22 91.7
Msa0329740 MtrunA17_Chr5g0429661 40.404 99 52 1 74 172 155 246 2.01e-21 90.9
Msa0329740 MtrunA17_Chr5g0440761 53.521 71 32 1 71 140 45 115 2.05e-21 89.4
Msa0329740 MtrunA17_Chr5g0441141 53.521 71 32 1 71 140 45 115 2.45e-21 89.4
Msa0329740 MtrunA17_Chr4g0008551 58.824 68 28 0 74 141 71 138 3.13e-21 90.5
Msa0329740 MtrunA17_Chr4g0013361 54.795 73 32 1 72 143 44 116 1.81e-20 87.4
Msa0329740 MtrunA17_Chr5g0441131 53.521 71 32 1 71 140 42 112 1.90e-20 85.1
Msa0329740 MtrunA17_Chr8g0342461 77.778 45 10 0 71 115 46 90 6.09e-20 82.4
Msa0329740 MtrunA17_Chr8g0342471 77.778 45 10 0 71 115 46 90 6.77e-20 82.4
Msa0329740 MtrunA17_Chr4g0053431 55.882 68 30 0 74 141 38 105 8.05e-20 85.1
Msa0329740 MtrunA17_Chr8g0342531 69.231 52 16 0 71 122 45 96 1.21e-19 82.4
Msa0329740 MtrunA17_Chr1g0177901 51.562 64 31 0 74 137 27 90 1.33e-19 83.6
Msa0329740 MtrunA17_Chr3g0099141 68.000 50 16 0 71 120 73 122 1.50e-19 81.6
Msa0329740 MtrunA17_Chr7g0228401 53.125 64 30 0 74 137 312 375 1.84e-19 86.3
Msa0329740 MtrunA17_Chr3g0133601 55.882 68 30 0 74 141 70 137 2.14e-19 83.2
Msa0329740 MtrunA17_Chr3g0117511 42.529 87 45 1 74 160 216 297 2.39e-19 85.9
Msa0329740 MtrunA17_Chr8g0342511 79.070 43 9 0 71 113 45 87 5.17e-19 79.0
Msa0329740 MtrunA17_Chr7g0238631 53.623 69 32 0 74 142 146 214 6.64e-19 84.7
Msa0329740 MtrunA17_Chr4g0058991 35.714 112 57 2 74 185 242 338 1.42e-18 83.6
Msa0329740 MtrunA17_Chr5g0401731 52.941 68 32 0 74 141 48 115 2.01e-18 82.4
Msa0329740 MtrunA17_Chr4g0042501 45.333 75 41 0 74 148 138 212 2.19e-18 82.8
Msa0329740 MtrunA17_Chr2g0323321 68.750 48 15 0 71 118 44 91 4.49e-18 77.0
Msa0329740 MtrunA17_Chr6g0454921 51.471 68 33 0 74 141 48 115 4.54e-18 79.3
Msa0329740 MtrunA17_Chr5g0437321 55.385 65 29 0 74 138 52 116 4.63e-18 80.9
Msa0329740 MtrunA17_Chr5g0417621 36.449 107 56 1 74 168 167 273 5.15e-18 82.0
Msa0329740 MtrunA17_Chr3g0139671 49.275 69 35 0 74 142 118 186 5.24e-18 82.4
Msa0329740 MtrunA17_Chr4g0042611 61.017 59 23 0 56 114 30 88 5.65e-18 75.9
Msa0329740 MtrunA17_Chr6g0480581 45.833 72 39 0 74 145 37 108 1.02e-17 79.0
Msa0329740 MtrunA17_Chr2g0294811 59.091 66 27 0 49 114 23 88 1.61e-17 75.5
Msa0329740 MtrunA17_Chr5g0395221 72.727 44 12 0 71 114 45 88 1.66e-17 74.7
Msa0329740 MtrunA17_Chr7g0233061 40.260 77 43 1 74 147 211 287 1.77e-17 80.1
Msa0329740 MtrunA17_Chr6g0460661 44.000 75 42 0 74 148 49 123 2.20e-17 76.3
Msa0329740 MtrunA17_Chr7g0238651 35.965 114 65 1 72 185 41 146 2.29e-17 79.7
Msa0329740 MtrunA17_Chr1g0157731 47.826 69 36 0 74 142 124 192 3.64e-17 80.1
Msa0329740 MtrunA17_Chr7g0228531 41.250 80 45 2 74 153 253 330 3.94e-17 79.3
Msa0329740 MtrunA17_Chr2g0316071 54.839 62 28 0 1 62 1 62 2.82e-16 70.9
Msa0329740 MtrunA17_Chr6g0460671 45.455 77 42 0 74 150 132 208 1.35e-15 74.7
Msa0329740 MtrunA17_Chr5g0397841 43.038 79 44 1 58 135 126 204 3.08e-15 73.9
Msa0329740 MtrunA17_Chr7g0254261 47.222 72 38 0 74 145 122 193 5.28e-15 72.8
Msa0329740 MtrunA17_Chr6g0453751 59.615 52 20 1 71 121 61 112 5.47e-15 69.3
Msa0329740 MtrunA17_Chr8g0362231 32.110 109 72 1 74 182 55 161 6.86e-14 70.1
Msa0329740 MtrunA17_Chr7g0228481 41.026 78 42 2 74 148 253 329 8.72e-14 69.7
Msa0329740 MtrunA17_Chr3g0125801 42.353 85 47 1 74 158 49 131 9.75e-14 68.9
Msa0329740 MtrunA17_Chr5g0416341 32.143 112 73 1 74 182 59 170 1.43e-13 69.3
Msa0329740 MtrunA17_Chr3g0104491 39.189 74 42 1 91 164 17 87 2.60e-12 64.7
Msa0329740 MtrunA17_Chr5g0434871 55.814 43 19 0 100 142 2 44 4.29e-12 59.7
Msa0329740 MtrunA17_Chr5g0425591 50.000 52 25 1 71 121 42 93 4.52e-12 60.5
Msa0329740 MtrunA17_Chr7g0233151 31.633 98 59 2 91 180 1 98 1.52e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0329740 AT4G01680.3 93.151 73 5 0 71 143 45 117 1.61e-44 149
Msa0329740 AT4G01680.1 93.151 73 5 0 71 143 45 117 1.16e-43 149
Msa0329740 AT4G01680.2 93.151 73 5 0 71 143 57 129 1.30e-43 150
Msa0329740 AT5G26660.2 81.013 79 15 0 67 145 10 88 3.00e-42 145
Msa0329740 AT1G57560.1 86.667 75 10 0 71 145 45 119 6.66e-42 144
Msa0329740 AT1G57560.2 86.667 75 10 0 71 145 45 119 6.89e-42 143
Msa0329740 AT5G26660.1 85.333 75 11 0 71 145 45 119 2.12e-41 144
Msa0329740 AT1G09540.1 86.667 75 10 0 71 145 45 119 4.16e-41 144
Msa0329740 AT5G12870.1 78.378 74 16 0 71 144 51 124 6.72e-38 133
Msa0329740 AT3G08500.1 61.165 103 40 0 71 173 63 165 2.06e-36 131
Msa0329740 AT3G12720.1 72.222 72 20 0 71 142 55 126 2.40e-36 130
Msa0329740 AT3G13890.2 76.389 72 17 0 71 142 45 116 1.26e-35 129
Msa0329740 AT3G61250.1 76.389 72 17 0 71 142 45 116 1.66e-35 127
Msa0329740 AT1G16490.1 57.843 102 39 1 71 168 47 148 1.28e-34 124
Msa0329740 AT1G63910.1 72.368 76 21 0 69 144 43 118 1.36e-34 127
Msa0329740 AT3G13890.1 76.056 71 17 0 72 142 55 125 1.48e-34 126
Msa0329740 AT1G79180.1 65.116 86 30 0 69 154 45 130 3.23e-34 124
Msa0329740 AT1G06180.1 65.517 87 28 1 71 155 45 131 4.74e-34 122
Msa0329740 AT5G65230.1 74.324 74 19 0 71 144 45 118 4.87e-34 124
Msa0329740 AT3G23250.1 67.089 79 26 0 71 149 45 123 5.00e-34 123
Msa0329740 AT1G79180.2 66.667 84 28 0 71 154 80 163 6.51e-34 124
Msa0329740 AT5G15310.4 65.517 87 30 0 56 142 30 116 1.38e-33 121
Msa0329740 AT5G56110.1 75.000 72 18 0 71 142 45 116 1.40e-33 123
Msa0329740 AT3G01140.1 49.640 139 53 3 7 142 35 159 1.88e-33 124
Msa0329740 AT3G01140.2 66.667 87 29 0 56 142 30 116 2.10e-33 123
Msa0329740 AT4G34990.1 50.400 125 56 1 71 195 45 163 2.31e-33 121
Msa0329740 AT1G74430.1 57.732 97 37 1 69 165 43 135 2.69e-33 121
Msa0329740 AT4G05100.1 72.222 72 20 0 71 142 46 117 2.71e-33 122
Msa0329740 AT4G12350.1 71.053 76 22 0 71 146 45 120 2.97e-33 121
Msa0329740 AT1G35515.1 52.212 113 45 1 71 174 45 157 2.99e-33 119
Msa0329740 AT5G60890.1 68.831 77 24 0 69 145 43 119 3.46e-33 121
Msa0329740 AT5G10280.1 72.973 74 20 0 71 144 45 118 3.57e-33 122
Msa0329740 AT4G28110.1 72.222 72 20 0 71 142 45 116 3.74e-33 121
Msa0329740 AT5G16770.4 58.696 92 38 0 53 144 27 118 4.77e-33 122
Msa0329740 AT5G16770.3 58.696 92 38 0 53 144 27 118 4.77e-33 122
Msa0329740 AT4G21440.1 62.637 91 32 2 53 142 27 116 4.99e-33 122
Msa0329740 AT1G22640.1 70.833 72 21 0 71 142 45 116 5.48e-33 120
Msa0329740 AT5G15310.2 65.517 87 30 0 56 142 30 116 6.64e-33 121
Msa0329740 AT2G31180.1 65.854 82 28 0 71 152 45 126 6.73e-33 119
Msa0329740 AT5G15310.1 65.517 87 30 0 56 142 30 116 7.81e-33 121
Msa0329740 AT5G16770.1 58.696 92 38 0 53 144 27 118 9.13e-33 121
Msa0329740 AT5G16770.2 58.696 92 38 0 53 144 27 118 9.13e-33 121
Msa0329740 AT2G16720.1 69.333 75 23 0 71 145 45 119 1.52e-32 119
Msa0329740 AT4G38620.1 69.444 72 22 0 71 142 45 116 4.32e-32 118
Msa0329740 AT1G56160.1 72.222 72 20 0 71 142 47 118 4.36e-32 118
Msa0329740 AT3G02940.2 67.568 74 24 0 71 144 45 118 5.21e-32 119
Msa0329740 AT4G22680.1 70.833 72 21 0 71 142 45 116 6.81e-32 117
Msa0329740 AT3G12820.1 70.833 72 21 0 71 142 47 118 6.98e-32 116
Msa0329740 AT4G17785.2 68.919 74 23 0 71 144 46 119 8.08e-32 119
Msa0329740 AT4G17785.1 68.919 74 23 0 71 144 46 119 8.50e-32 119
Msa0329740 AT4G09460.1 68.056 72 23 0 71 142 45 116 8.94e-32 116
Msa0329740 AT3G02940.1 67.568 74 24 0 71 144 45 118 9.40e-32 118
Msa0329740 AT3G02940.3 67.568 74 24 0 71 144 45 118 9.40e-32 118
Msa0329740 AT5G14750.1 47.748 111 56 1 49 157 27 137 1.22e-31 115
Msa0329740 AT5G16600.1 50.847 118 49 1 71 188 45 153 1.47e-31 118
Msa0329740 AT5G62320.1 69.444 72 22 0 71 142 53 124 1.62e-31 115
Msa0329740 AT1G66230.1 68.000 75 24 0 70 144 44 118 3.12e-31 116
Msa0329740 AT3G12820.2 68.056 72 23 0 74 145 2 73 3.43e-31 113
Msa0329740 AT5G55020.1 68.919 74 23 0 71 144 59 132 3.58e-31 119
Msa0329740 AT1G18570.1 67.532 77 25 0 69 145 44 120 5.67e-31 117
Msa0329740 AT5G06100.1 72.222 72 20 0 72 143 66 137 5.88e-31 118
Msa0329740 AT3G49690.1 66.667 78 26 0 69 146 44 121 5.91e-31 116
Msa0329740 AT5G35550.2 65.823 79 27 0 71 149 50 128 6.02e-31 114
Msa0329740 AT5G54230.1 69.444 72 22 0 71 142 45 116 6.18e-31 116
Msa0329740 AT1G18710.1 65.333 75 26 0 71 145 45 119 6.38e-31 115
Msa0329740 AT5G57620.1 46.094 128 53 2 69 180 44 171 6.81e-31 116
Msa0329740 AT5G40330.1 49.057 106 54 0 49 154 23 128 8.05e-31 113
Msa0329740 AT3G27810.2 54.023 87 40 0 71 157 4 90 9.12e-31 112
Msa0329740 AT3G11440.2 69.444 72 22 0 72 143 75 146 1.13e-30 117
Msa0329740 AT5G06100.5 72.222 72 20 0 72 143 66 137 1.17e-30 118
Msa0329740 AT5G06100.2 72.222 72 20 0 72 143 66 137 1.17e-30 118
Msa0329740 AT5G06100.3 72.222 72 20 0 72 143 66 137 1.17e-30 118
Msa0329740 AT5G06100.4 72.222 72 20 0 72 143 66 137 1.17e-30 118
Msa0329740 AT5G07700.1 47.328 131 49 2 69 199 43 153 1.23e-30 115
Msa0329740 AT5G07700.2 47.328 131 49 2 69 199 43 153 1.23e-30 115
Msa0329740 AT5G35550.1 65.823 79 27 0 71 149 47 125 1.23e-30 114
Msa0329740 AT5G65790.1 65.385 78 27 0 69 146 44 121 1.73e-30 116
Msa0329740 AT2G47460.1 56.881 109 44 2 65 170 38 146 1.93e-30 115
Msa0329740 AT1G34670.1 69.863 73 22 0 72 144 46 118 2.28e-30 115
Msa0329740 AT3G27920.1 55.682 88 39 0 61 148 37 124 2.32e-30 112
Msa0329740 AT3G11440.3 69.444 72 22 0 72 143 75 146 2.89e-30 117
Msa0329740 AT3G11440.4 69.444 72 22 0 72 143 75 146 2.89e-30 117
Msa0329740 AT3G11440.1 69.444 72 22 0 72 143 75 146 2.89e-30 117
Msa0329740 AT5G61420.2 66.234 77 26 0 69 145 43 119 3.89e-30 115
Msa0329740 AT5G14340.1 67.568 74 24 0 71 144 57 130 3.90e-30 113
Msa0329740 AT3G27810.1 54.651 86 39 0 71 156 53 138 4.52e-30 111
Msa0329740 AT1G74080.1 66.234 77 26 0 69 145 43 119 4.70e-30 114
Msa0329740 AT3G62610.1 69.444 72 22 0 71 142 45 116 7.54e-30 114
Msa0329740 AT3G01530.1 61.644 73 28 0 71 143 58 130 9.43e-30 110
Msa0329740 AT2G26960.1 63.514 74 27 0 70 143 52 125 1.18e-29 114
Msa0329740 AT5G07690.1 67.532 77 25 0 69 145 43 119 1.29e-29 113
Msa0329740 AT3G13540.1 66.667 72 24 0 71 142 56 127 1.84e-29 110
Msa0329740 AT5G49330.1 68.919 74 23 0 69 142 43 116 1.85e-29 112
Msa0329740 AT5G14750.3 53.488 86 38 1 74 157 18 103 1.93e-29 108
Msa0329740 AT4G26930.1 64.474 76 27 0 69 144 50 125 2.12e-29 113
Msa0329740 AT2G32460.2 64.384 73 26 0 71 143 39 111 2.78e-29 114
Msa0329740 AT2G32460.1 64.384 73 26 0 71 143 51 123 2.91e-29 114
Msa0329740 AT3G48920.1 61.728 81 29 1 71 149 51 131 5.45e-29 109
Msa0329740 AT5G23000.1 64.865 74 26 0 69 142 44 117 5.70e-29 111
Msa0329740 AT4G37780.1 61.842 76 29 0 71 146 46 121 9.54e-29 110
Msa0329740 AT5G52260.1 55.660 106 47 0 71 176 45 150 1.18e-28 108
Msa0329740 AT3G30210.1 49.194 124 54 3 71 190 60 178 1.22e-28 109
Msa0329740 AT4G25560.1 65.823 79 27 0 69 147 41 119 1.53e-28 108
Msa0329740 AT3G47600.2 59.259 81 33 0 68 148 36 116 2.00e-28 109
Msa0329740 AT5G62470.2 54.839 93 42 0 71 163 45 137 2.10e-28 110
Msa0329740 AT5G52600.1 61.644 73 28 0 69 141 43 115 2.20e-28 106
Msa0329740 AT5G40350.2 54.023 87 40 0 71 157 5 91 2.99e-28 105
Msa0329740 AT3G46130.3 59.740 77 31 0 70 146 9 85 3.01e-28 107
Msa0329740 AT2G36890.1 63.514 74 27 0 69 142 44 117 3.55e-28 108
Msa0329740 AT3G24310.1 62.821 78 29 0 71 148 51 128 3.83e-28 107
Msa0329740 AT3G47600.1 60.256 78 31 0 71 148 45 122 4.26e-28 108
Msa0329740 AT3G46130.4 60.526 76 30 0 71 146 20 95 4.67e-28 106
Msa0329740 AT4G13480.1 65.753 73 25 0 71 143 39 111 5.38e-28 107
Msa0329740 AT5G59780.2 60.526 76 30 0 71 146 20 95 5.53e-28 105
Msa0329740 AT2G36890.2 63.514 74 27 0 69 142 85 158 5.59e-28 108
Msa0329740 AT5G59780.3 59.740 77 31 0 70 146 40 116 6.34e-28 106
Msa0329740 AT1G08810.1 51.613 93 45 0 71 163 45 137 6.40e-28 107
Msa0329740 AT3G46130.1 59.740 77 31 0 70 146 41 117 8.12e-28 106
Msa0329740 AT5G40350.1 54.023 87 40 0 71 157 50 136 8.36e-28 105
Msa0329740 AT3G53200.2 62.667 75 28 0 67 141 5 79 9.77e-28 105
Msa0329740 AT1G74650.1 65.278 72 25 0 71 142 45 116 1.31e-27 107
Msa0329740 AT3G53200.1 63.889 72 26 0 70 141 41 112 2.22e-27 105
Msa0329740 AT3G28910.1 63.514 74 27 0 71 144 45 118 2.32e-27 106
Msa0329740 AT3G28470.1 66.176 68 23 0 69 136 43 110 5.75e-27 105
Msa0329740 AT5G62470.1 54.444 90 41 0 74 163 47 136 7.28e-27 105
Msa0329740 AT1G68320.1 60.811 74 29 0 71 144 52 125 1.50e-26 103
Msa0329740 AT1G25340.1 59.459 74 30 0 71 144 51 124 3.16e-26 103
Msa0329740 AT2G47190.1 58.108 74 31 0 71 144 53 126 5.63e-26 102
Msa0329740 AT1G48000.1 62.857 70 26 0 71 140 65 134 7.14e-26 101
Msa0329740 AT3G23250.2 63.636 66 24 0 84 149 1 66 1.02e-25 100
Msa0329740 AT1G66370.1 56.164 73 32 0 69 141 39 111 6.37e-24 96.3
Msa0329740 AT1G25340.2 59.420 69 28 0 76 144 51 119 9.37e-24 96.3
Msa0329740 AT2G26950.1 54.545 77 32 1 69 145 47 120 1.05e-23 97.8
Msa0329740 AT1G22640.3 66.102 59 20 0 84 142 1 59 1.40e-23 94.0
Msa0329740 AT1G25340.3 59.420 69 28 0 76 144 51 119 1.56e-23 96.3
Msa0329740 AT3G06490.1 63.514 74 27 0 71 144 52 125 2.14e-22 93.6
Msa0329740 AT1G66380.3 58.667 75 31 0 67 141 4 78 2.99e-22 87.8
Msa0329740 AT3G60460.1 55.263 76 33 1 69 143 42 117 4.37e-22 92.4
Msa0329740 AT5G14750.4 48.684 76 37 1 84 157 1 76 1.53e-21 87.0
Msa0329740 AT5G14750.2 48.684 76 37 1 84 157 1 76 1.53e-21 87.0
Msa0329740 AT1G66380.1 60.563 71 28 0 71 141 41 111 1.90e-21 86.7
Msa0329740 AT2G39880.1 63.235 68 25 0 74 141 83 150 5.47e-21 90.1
Msa0329740 AT5G40360.1 45.679 81 43 1 74 154 191 270 7.66e-21 89.7
Msa0329740 AT5G49620.1 61.644 73 28 0 72 144 60 132 9.84e-21 88.6
Msa0329740 AT1G71030.2 56.061 66 29 0 77 142 5 70 1.86e-20 85.5
Msa0329740 AT3G09230.1 50.000 82 41 0 74 155 88 169 1.92e-20 89.0
Msa0329740 AT1G71030.1 56.061 66 29 0 77 142 19 84 2.21e-20 85.5
Msa0329740 AT4G18770.1 46.575 73 39 0 74 146 250 322 3.86e-20 88.2
Msa0329740 AT2G25230.1 50.000 72 35 1 74 145 59 129 4.39e-20 85.5
Msa0329740 AT5G58850.1 39.200 125 72 3 74 198 138 258 5.25e-20 88.2
Msa0329740 AT5G11050.1 41.237 97 54 1 74 167 138 234 5.43e-20 87.8
Msa0329740 AT1G56650.1 59.155 71 29 0 71 141 41 111 8.86e-20 85.1
Msa0329740 AT1G66390.1 59.155 71 29 0 71 141 41 111 1.31e-19 84.7
Msa0329740 AT3G55730.1 58.824 68 28 0 74 141 89 156 2.67e-19 85.9
Msa0329740 AT1G69560.1 45.333 75 41 0 74 148 140 214 8.67e-19 83.6
Msa0329740 AT1G69560.2 45.333 75 41 0 74 148 156 230 9.11e-19 84.0
Msa0329740 AT3G27785.1 40.230 87 52 0 74 160 222 308 1.38e-18 84.0
Msa0329740 AT4G33450.1 41.053 95 54 1 74 168 52 144 1.44e-18 82.0
Msa0329740 AT4G37260.1 54.412 68 31 0 74 141 46 113 1.82e-18 82.8
Msa0329740 AT1G26780.1 39.785 93 49 1 74 166 131 216 2.46e-18 81.6
Msa0329740 AT1G26780.2 39.785 93 49 1 74 166 131 216 4.39e-18 82.0
Msa0329740 AT5G67300.1 43.158 95 52 1 74 166 39 133 5.01e-18 81.3
Msa0329740 AT5G02320.1 50.725 69 34 0 74 142 160 228 5.95e-18 82.4
Msa0329740 AT5G02320.2 50.725 69 34 0 74 142 160 228 5.95e-18 82.4
Msa0329740 AT5G02320.3 50.725 69 34 0 74 142 100 168 6.43e-18 82.4
Msa0329740 AT1G17950.1 48.611 72 37 0 74 145 38 109 7.25e-18 80.1
Msa0329740 AT3G09370.1 51.471 68 33 0 74 141 163 230 1.34e-17 81.3
Msa0329740 AT3G09370.2 51.471 68 33 0 74 141 168 235 1.37e-17 81.3
Msa0329740 AT1G18960.1 46.053 76 39 1 69 144 38 111 1.48e-17 80.1
Msa0329740 AT3G29020.1 40.860 93 53 1 74 164 98 190 1.86e-17 78.6
Msa0329740 AT3G09370.3 51.471 68 33 0 74 141 176 243 1.90e-17 80.9
Msa0329740 AT5G40430.1 45.833 72 38 1 74 145 86 156 2.10e-17 79.0
Msa0329740 AT2G23290.1 52.941 68 32 0 74 141 46 113 2.19e-17 79.7
Msa0329740 AT3G29020.2 40.860 93 53 1 74 164 100 192 2.30e-17 79.3
Msa0329740 AT5G49620.2 51.724 87 28 1 72 144 60 146 3.23e-17 79.3
Msa0329740 AT5G11510.3 46.667 75 40 0 74 148 114 188 4.33e-17 80.1
Msa0329740 AT5G11510.1 46.667 75 40 0 74 148 114 188 4.33e-17 80.1
Msa0329740 AT5G11510.4 46.667 75 40 0 74 148 114 188 4.33e-17 80.1
Msa0329740 AT5G11510.2 46.667 75 40 0 74 148 114 188 4.80e-17 80.1
Msa0329740 AT3G50060.1 52.941 68 32 0 74 141 39 106 4.92e-17 78.6
Msa0329740 AT5G11510.5 46.667 75 40 0 74 148 114 188 4.95e-17 79.7
Msa0329740 AT4G32730.5 46.377 69 37 0 74 142 120 188 9.32e-17 79.3
Msa0329740 AT4G32730.4 46.377 69 37 0 74 142 120 188 9.32e-17 79.3
Msa0329740 AT4G32730.3 46.377 69 37 0 74 142 120 188 9.32e-17 79.3
Msa0329740 AT4G32730.2 46.377 69 37 0 74 142 120 188 9.32e-17 79.3
Msa0329740 AT4G32730.1 46.377 69 37 0 74 142 120 188 1.04e-16 79.0
Msa0329740 AT1G73410.1 50.704 71 35 0 74 144 39 109 2.80e-16 75.5
Msa0329740 AT1G73410.2 50.704 71 35 0 74 144 39 109 3.12e-16 74.7
Msa0329740 AT5G17800.1 42.667 75 43 0 72 146 124 198 3.67e-16 76.3
Msa0329740 AT4G00540.2 47.887 71 37 0 74 144 139 209 2.90e-15 74.3
Msa0329740 AT4G00540.1 47.887 71 37 0 74 144 137 207 4.19e-15 73.9
Msa0329740 AT2G37630.1 43.038 79 44 1 72 149 38 116 1.11e-14 72.4
Msa0329740 AT5G39700.1 32.407 108 72 1 60 166 74 181 4.25e-14 68.6
Msa0329740 AT1G14350.2 42.105 76 44 0 74 149 58 133 5.31e-14 70.9
Msa0329740 AT1G14350.1 42.105 76 44 0 74 149 58 133 5.31e-14 70.9
Msa0329740 AT2G02820.2 40.789 76 45 0 74 149 63 138 8.74e-14 70.1
Msa0329740 AT5G59780.1 58.333 48 20 0 99 146 4 51 8.85e-14 67.4
Msa0329740 AT2G02820.1 40.789 76 45 0 74 149 63 138 9.03e-14 70.1
Msa0329740 AT3G46130.2 58.333 48 20 0 99 146 4 51 9.66e-14 67.8
Msa0329740 AT2G02820.3 40.789 76 45 0 74 149 63 138 9.94e-14 69.7
Msa0329740 AT4G25560.2 60.784 51 20 0 97 147 3 53 1.43e-13 67.8
Msa0329740 AT1G14350.3 45.588 68 37 0 82 149 23 90 2.92e-13 68.6
Msa0329740 AT1G14350.4 45.588 68 37 0 82 149 23 90 2.92e-13 68.6
Msa0329740 AT3G28910.2 61.905 42 16 0 103 144 1 42 5.42e-11 60.8
Msa0329740 AT1G16490.2 47.826 69 30 2 104 168 13 79 6.31e-11 60.1
Msa0329740 AT1G74650.3 62.500 40 15 0 103 142 1 40 6.44e-11 60.8

Find 40 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCATGTTCAGTTGCTTC+TGG 0.226400 2_4:-43599542 Msa0329740:CDS
ATTTCCATTGCATATGCTTT+TGG 0.239502 2_4:+43600198 None:intergenic
TTAGAATGTTTCTTGTTATC+AGG 0.249545 2_4:+43599571 None:intergenic
AATTGTGAAGAAAGGTCTTT+TGG 0.249908 2_4:-43602283 Msa0329740:CDS
TTGCTTCTGCTCCAAGCTTT+TGG 0.254437 2_4:-43599368 Msa0329740:CDS
AAGATAAAGCAATACTTCTT+TGG 0.267263 2_4:+43602343 None:intergenic
GGGAGTGAAGAAAGGCCTTT+TGG 0.301967 2_4:-43602262 Msa0329740:CDS
ATTTCATTGTCTGTCCTTCC+CGG 0.329675 2_4:+43600400 None:intergenic
TCAAATTGCGGCGCAATTGC+CGG 0.345914 2_4:-43600419 Msa0329740:CDS
ACAATGAAATAAAGAATCTA+TGG 0.361483 2_4:-43600387 Msa0329740:CDS
AAGAAGAGACTGAGGCAAAA+AGG 0.381753 2_4:-43600352 Msa0329740:intron
ATTCATGTTCAGTTGCTTCT+GGG 0.387095 2_4:-43599541 Msa0329740:intron
TTCATGCAGTACTAGGAAAT+AGG 0.390350 2_4:-43600604 Msa0329740:intron
TCAGGTATCAATGGTTTCCT+TGG 0.403011 2_4:+43599589 None:intergenic
AAAAGCATATGCAATGGAAA+TGG 0.403016 2_4:-43600196 Msa0329740:CDS
GTTGAACTTCATGCAGTACT+AGG 0.413389 2_4:-43600611 Msa0329740:CDS
AATGGTTTCCTTGGAACTAA+AGG 0.424465 2_4:+43599598 None:intergenic
TTCTTGTTATCAGGTATCAA+TGG 0.432365 2_4:+43599580 None:intergenic
CGTTCAGTTGACCAAAAGCT+TGG 0.451908 2_4:+43599357 None:intergenic
CAAATTGCGGCGCAATTGCC+GGG 0.453452 2_4:-43600418 Msa0329740:CDS
CTATTGATTGTAGGAGGAAG+AGG 0.455638 2_4:-43602385 Msa0329740:intron
AAGCAATACTTCTTTGGAGC+AGG 0.474408 2_4:+43602349 None:intergenic
GTGGTAAGAGCTGCACGCTT+AGG 0.478532 2_4:-43600700 Msa0329740:CDS
TGAAGTCTCCTTTAGTTCCA+AGG 0.494501 2_4:-43599606 Msa0329740:CDS
ATATGCAATGGAAATGGAAA+AGG 0.504662 2_4:-43600190 Msa0329740:intron
TTGCGGCGCAATTGCCGGGA+AGG 0.523236 2_4:-43600414 Msa0329740:CDS
GTGCCACCATTCTTCCCAAA+AGG 0.525571 2_4:+43602247 None:intergenic
GTAAGAGCTGCACGCTTAGG+TGG 0.555517 2_4:-43600697 Msa0329740:CDS
CAATACTTCTTTGGAGCAGG+TGG 0.556152 2_4:+43602352 None:intergenic
TTATCAGGTTTGCAAAGATG+TGG 0.556818 2_4:-43600719 Msa0329740:intron
TTCACCAAAAGCATATGCAA+TGG 0.574736 2_4:-43600202 Msa0329740:CDS
TATCAGATGGTCTCAAATTG+CGG 0.579070 2_4:-43600431 Msa0329740:intron
TGAACGTGCACAAAGAAGAA+AGG 0.582792 2_4:-43599340 Msa0329740:CDS
GTGATGATAATTGTGAAGAA+AGG 0.593073 2_4:-43602291 Msa0329740:CDS
ATTTGTACGTTATCTCGACA+TGG 0.600815 2_4:+43602316 None:intergenic
AAGAGGAACATTCTCACAAG+AGG 0.608650 2_4:-43600648 Msa0329740:CDS
TTTGTACGTTATCTCGACAT+GGG 0.631785 2_4:+43602317 None:intergenic
CATGTTTGAAGAAGAGACTG+AGG 0.677238 2_4:-43600360 Msa0329740:CDS
ACGTGCACAAAGAAGAAAGG+AGG 0.694653 2_4:-43599337 Msa0329740:CDS
TAACAAGAAACATTCTAACG+AGG 0.748950 2_4:-43599566 Msa0329740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGATTCATTTAATTAA+TGG - chr2_4:43600004-43600023 Msa0329740:intron 10.0%
!!! TTTTTTTTTTTTGAAAGATA+TGG - chr2_4:43600289-43600308 Msa0329740:intron 10.0%
!!! TTTTTTTTTTTGAAAGATAT+GGG - chr2_4:43600290-43600309 Msa0329740:intron 10.0%
!!! TTGATTTTGATTAAAATTTT+AGG + chr2_4:43600348-43600367 None:intergenic 10.0%
!!! TTTATATATTTTTATATGCA+CGG + chr2_4:43600999-43601018 None:intergenic 10.0%
!!! ATAGAATATTTTTATAGTTT+AGG - chr2_4:43601162-43601181 Msa0329740:intron 10.0%
!!! AATTTTTGTTTAATTTTATC+AGG - chr2_4:43601299-43601318 Msa0329740:intron 10.0%
!!! ATGAACATAATTTTTTAAAA+CGG + chr2_4:43601574-43601593 None:intergenic 10.0%
!! TTGTTTATAATTTATAAGAG+TGG + chr2_4:43599975-43599994 None:intergenic 15.0%
!! GTCAATAATAATATTCTTAT+TGG + chr2_4:43600185-43600204 None:intergenic 15.0%
!!! TAATTGATAACTGAAAAAAT+GGG + chr2_4:43600480-43600499 None:intergenic 15.0%
!!! ATAATTGATAACTGAAAAAA+TGG + chr2_4:43600481-43600500 None:intergenic 15.0%
!! TTATAATAGTGTTATATTGT+TGG - chr2_4:43600519-43600538 Msa0329740:intron 15.0%
!!! TTATATATTTTTATATGCAC+GGG + chr2_4:43600998-43601017 None:intergenic 15.0%
!!! ATTTTTATAGTTTAGGAATT+AGG - chr2_4:43601169-43601188 Msa0329740:intron 15.0%
!!! AAATTTAATATTTTTCTCAC+TGG - chr2_4:43601981-43602000 Msa0329740:intron 15.0%
!!! TATTACATTCTATTGATTGT+AGG - chr2_4:43599639-43599658 Msa0329740:intron 20.0%
!! TTTATATTTATATCACCCTT+CGG - chr2_4:43599949-43599968 Msa0329740:intron 20.0%
!!! TTTTTGCTTATAATAGTGAT+CGG - chr2_4:43600090-43600109 Msa0329740:intron 20.0%
!! TAATTAAGGAATACATGATT+TGG - chr2_4:43600119-43600138 Msa0329740:intron 20.0%
!! AATTAAGGAATACATGATTT+GGG - chr2_4:43600120-43600139 Msa0329740:intron 20.0%
!! TCATTGAAAATGATTACAAT+GGG - chr2_4:43600254-43600273 Msa0329740:CDS 20.0%
!! ACGCTAGTTATTAAATATAA+AGG - chr2_4:43600437-43600456 Msa0329740:intron 20.0%
!! CGCTAGTTATTAAATATAAA+GGG - chr2_4:43600438-43600457 Msa0329740:intron 20.0%
!!! ATAAAGGGAATAAAAGATTT+TGG - chr2_4:43600453-43600472 Msa0329740:intron 20.0%
!!! AATTGATAACTGAAAAAATG+GGG + chr2_4:43600479-43600498 None:intergenic 20.0%
!! TGAATATAATAATAAGTCCA+AGG + chr2_4:43600671-43600690 None:intergenic 20.0%
!!! TTGTATACTTTTATATGCAA+GGG + chr2_4:43601042-43601061 None:intergenic 20.0%
!!! TTTGTATACTTTTATATGCA+AGG + chr2_4:43601043-43601062 None:intergenic 20.0%
!!! AATCTATTGTTTTAAGATCT+TGG - chr2_4:43601087-43601106 Msa0329740:intron 20.0%
!!! ATCTATTGTTTTAAGATCTT+GGG - chr2_4:43601088-43601107 Msa0329740:intron 20.0%
!!! TTGTAATAAACCATCATTTT+AGG + chr2_4:43601224-43601243 None:intergenic 20.0%
!! ACAATGAAATAAAGAATCTA+TGG - chr2_4:43601646-43601665 Msa0329740:intron 20.0%
!! ATAATCTTTCACTTATATCT+TGG + chr2_4:43602066-43602085 None:intergenic 20.0%
!!! TTTTATGAAATGGACTATAT+AGG + chr2_4:43602102-43602121 None:intergenic 20.0%
!! CAAAATCAATTATCTTACAT+AGG + chr2_4:43602185-43602204 None:intergenic 20.0%
!!! CTATGTAAGATAATTGATTT+TGG - chr2_4:43602183-43602202 Msa0329740:intron 20.0%
!! TTATAAACCTTATAGTCAAA+GGG - chr2_4:43602522-43602541 Msa0329740:intron 20.0%
!! AAAAAATCATTGCTAGAATA+AGG + chr2_4:43602563-43602582 None:intergenic 20.0%
! AGACAACCAGTAAAAAAAAA+AGG - chr2_4:43599610-43599629 Msa0329740:CDS 25.0%
!!! TTACGTCCTTTTTTTTTTAC+TGG + chr2_4:43599619-43599638 None:intergenic 25.0%
! AAGATAAAGCAATACTTCTT+TGG + chr2_4:43599693-43599712 None:intergenic 25.0%
! GTCATTGAAAATGATTACAA+TGG - chr2_4:43600253-43600272 Msa0329740:CDS 25.0%
! ATCAAACAATTGCTTTCTAA+CGG - chr2_4:43600762-43600781 Msa0329740:intron 25.0%
!!! TCTATTGTTTTAAGATCTTG+GGG - chr2_4:43601089-43601108 Msa0329740:intron 25.0%
! TCATGGATTTCATATATTTG+CGG - chr2_4:43601119-43601138 Msa0329740:intron 25.0%
! TTAAGACCTGATTTAAAAAG+AGG - chr2_4:43601368-43601387 Msa0329740:intron 25.0%
!! AATGTTCCTCTTTTTAAATC+AGG + chr2_4:43601377-43601396 None:intergenic 25.0%
! GTAAATTTCTACTACTAACT+TGG - chr2_4:43601451-43601470 Msa0329740:intron 25.0%
! CATAGGAGAAGATAAAAATA+GGG + chr2_4:43601478-43601497 None:intergenic 25.0%
!! TTCATTTTCTTCTTATCAGA+TGG - chr2_4:43601589-43601608 Msa0329740:intron 25.0%
! TCATTGGATAATAATATCTC+TGG + chr2_4:43601736-43601755 None:intergenic 25.0%
! TTTCAAAAGGTTCAATTCAT+TGG + chr2_4:43601752-43601771 None:intergenic 25.0%
!! ACAAAGAGTTTTTCATTGAT+AGG - chr2_4:43601874-43601893 Msa0329740:intron 25.0%
! TCCATTTCATAAAATCACTT+GGG - chr2_4:43602108-43602127 Msa0329740:intron 25.0%
! AATTAAAGAATGCTTCCAAA+GGG + chr2_4:43602139-43602158 None:intergenic 25.0%
! AAATTAAAGAATGCTTCCAA+AGG + chr2_4:43602140-43602159 None:intergenic 25.0%
! TCAGAACAAAAGAAATTGAA+TGG + chr2_4:43602281-43602300 None:intergenic 25.0%
! TTCAGATAGTGAAATGTTTA+TGG - chr2_4:43602337-43602356 Msa0329740:CDS 25.0%
!! TTAGAATGTTTCTTGTTATC+AGG + chr2_4:43602465-43602484 None:intergenic 25.0%
! CTTATAAACCTTATAGTCAA+AGG - chr2_4:43602521-43602540 Msa0329740:intron 25.0%
! ATTGTTTATGTTTTGTGTGC+AGG - chr2_4:43599382-43599401 Msa0329740:intron 30.0%
! TACATTCTATTGATTGTAGG+AGG - chr2_4:43599642-43599661 Msa0329740:intron 30.0%
GTGATGATAATTGTGAAGAA+AGG - chr2_4:43599742-43599761 Msa0329740:intron 30.0%
! AATTGTGAAGAAAGGTCTTT+TGG - chr2_4:43599750-43599769 Msa0329740:intron 30.0%
! ATTGTGAAGAAAGGTCTTTT+GGG - chr2_4:43599751-43599770 Msa0329740:intron 30.0%
TCTGTAGATATACTTTGACA+AGG + chr2_4:43599863-43599882 None:intergenic 30.0%
TTCAAGGGAAAGTGAATTAT+TGG - chr2_4:43600718-43600737 Msa0329740:intron 30.0%
TCAAACAATTGCTTTCTAAC+GGG - chr2_4:43600763-43600782 Msa0329740:intron 30.0%
TATTCTTAGCAACCTAAAGA+GGG - chr2_4:43600870-43600889 Msa0329740:intron 30.0%
!! ATTGATCGTTTGTTGTTTCA+TGG + chr2_4:43600940-43600959 None:intergenic 30.0%
!! AGTGACATGTTGATAGTTTA+GGG + chr2_4:43600968-43600987 None:intergenic 30.0%
! ATGCAAGGGTAAAATACTTT+TGG + chr2_4:43601028-43601047 None:intergenic 30.0%
!!! CTATTGTTTTAAGATCTTGG+GGG - chr2_4:43601090-43601109 Msa0329740:intron 30.0%
! CGGACTAAATTGACAAATTT+TGG - chr2_4:43601139-43601158 Msa0329740:intron 30.0%
TTGAAGAGAGTGATAGTTTA+AGG - chr2_4:43601198-43601217 Msa0329740:intron 30.0%
! TAGTTTAAGGCCTAAAATGA+TGG - chr2_4:43601211-43601230 Msa0329740:intron 30.0%
CCATAGGAGAAGATAAAAAT+AGG + chr2_4:43601479-43601498 None:intergenic 30.0%
!!! CCTATTTTTATCTTCTCCTA+TGG - chr2_4:43601476-43601495 Msa0329740:intron 30.0%
TTGAACTCTCTGATTTCAAA+AGG + chr2_4:43601765-43601784 None:intergenic 30.0%
! ATTTCCATTGCATATGCTTT+TGG + chr2_4:43601838-43601857 None:intergenic 30.0%
! AAAAGCATATGCAATGGAAA+TGG - chr2_4:43601837-43601856 Msa0329740:intron 30.0%
ATATGCAATGGAAATGGAAA+AGG - chr2_4:43601843-43601862 Msa0329740:intron 30.0%
AATGAAAAACTCTTTGTTGC+AGG + chr2_4:43601871-43601890 None:intergenic 30.0%
AAATTTCCCATCAAATCTGA+GGG + chr2_4:43601909-43601928 None:intergenic 30.0%
AAAATTTCCCATCAAATCTG+AGG + chr2_4:43601910-43601929 None:intergenic 30.0%
TTTGTATAACTCATCTGAAG+TGG + chr2_4:43601933-43601952 None:intergenic 30.0%
! TATTTTTCTCACTGGAACAT+AGG - chr2_4:43601989-43602008 Msa0329740:intron 30.0%
! ATTTTTCTCACTGGAACATA+GGG - chr2_4:43601990-43602009 Msa0329740:intron 30.0%
GTCCATTTCATAAAATCACT+TGG - chr2_4:43602107-43602126 Msa0329740:intron 30.0%
! ACCCAAGTGATTTTATGAAA+TGG + chr2_4:43602112-43602131 None:intergenic 30.0%
CTTACATAGGTATAGATTCA+AGG + chr2_4:43602172-43602191 None:intergenic 30.0%
! TTCTTTGTTATAGAGTGCAA+TGG - chr2_4:43602304-43602323 Msa0329740:CDS 30.0%
! TCTTTGTTATAGAGTGCAAT+GGG - chr2_4:43602305-43602324 Msa0329740:CDS 30.0%
! TTCTTGTTATCAGGTATCAA+TGG + chr2_4:43602456-43602475 None:intergenic 30.0%
TAACAAGAAACATTCTAACG+AGG - chr2_4:43602467-43602486 Msa0329740:intron 30.0%
! CTGAAATGAAAAAGTGCACA+CGG + chr2_4:43599354-43599373 None:intergenic 35.0%
TTTGTACGTTATCTCGACAT+GGG + chr2_4:43599719-43599738 None:intergenic 35.0%
ATTTGTACGTTATCTCGACA+TGG + chr2_4:43599720-43599739 None:intergenic 35.0%
AATTTATAAGAGTGGCCGAA+GGG + chr2_4:43599967-43599986 None:intergenic 35.0%
TAATTTATAAGAGTGGCCGA+AGG + chr2_4:43599968-43599987 None:intergenic 35.0%
TGCTTATAATAGTGATCGGA+TGG - chr2_4:43600094-43600113 Msa0329740:intron 35.0%
TCACTTTCCCTTGAATTGAA+TGG + chr2_4:43600713-43600732 None:intergenic 35.0%
! CATCAAAGTGCTTGAAATGA+AGG - chr2_4:43600826-43600845 Msa0329740:intron 35.0%
GTATTCTTAGCAACCTAAAG+AGG - chr2_4:43600869-43600888 Msa0329740:intron 35.0%
ATCAAAGTCCAAAATCACCA+TGG + chr2_4:43600910-43600929 None:intergenic 35.0%
!! CAGTGACATGTTGATAGTTT+AGG + chr2_4:43600969-43600988 None:intergenic 35.0%
TTATCAGGTTTGCAAAGATG+TGG - chr2_4:43601314-43601333 Msa0329740:intron 35.0%
TTCATGCAGTACTAGGAAAT+AGG - chr2_4:43601429-43601448 Msa0329740:intron 35.0%
TATCACTCTTGCTTAACCAT+AGG + chr2_4:43601495-43601514 None:intergenic 35.0%
ATGGTTAAGCAAGAGTGATA+AGG - chr2_4:43601495-43601514 Msa0329740:intron 35.0%
TATCAGATGGTCTCAAATTG+CGG - chr2_4:43601602-43601621 Msa0329740:intron 35.0%
! TTCACCAAAAGCATATGCAA+TGG - chr2_4:43601831-43601850 Msa0329740:intron 35.0%
ATTCAACCCTCAGATTTGAT+GGG - chr2_4:43601900-43601919 Msa0329740:intron 35.0%
! TTTTTCTCACTGGAACATAG+GGG - chr2_4:43601991-43602010 Msa0329740:intron 35.0%
AATGGTTTCCTTGGAACTAA+AGG + chr2_4:43602438-43602457 None:intergenic 35.0%
ATTCATGTTCAGTTGCTTCT+GGG - chr2_4:43602492-43602511 Msa0329740:intron 35.0%
TTTGACACCCTTTGACTATA+AGG + chr2_4:43602532-43602551 None:intergenic 35.0%
AGAAGTTGCAGTTCTTTACA+TGG + chr2_4:43602617-43602636 None:intergenic 35.0%
! CTATTGATTGTAGGAGGAAG+AGG - chr2_4:43599648-43599667 Msa0329740:intron 40.0%
!! AAGCAATACTTCTTTGGAGC+AGG + chr2_4:43599687-43599706 None:intergenic 40.0%
GTGATCGGATGGTGTAATTA+AGG - chr2_4:43600105-43600124 Msa0329740:intron 40.0%
AGACTGCAACTCTTCTGTAT+AGG - chr2_4:43600574-43600593 Msa0329740:intron 40.0%
GACTGCAACTCTTCTGTATA+GGG - chr2_4:43600575-43600594 Msa0329740:intron 40.0%
! CTTTCAGAGACGTTGACTAT+TGG - chr2_4:43600617-43600636 Msa0329740:CDS 40.0%
! TTCTCGTGCCATTCAATTCA+AGG - chr2_4:43600702-43600721 Msa0329740:CDS 40.0%
! TCTCGTGCCATTCAATTCAA+GGG - chr2_4:43600703-43600722 Msa0329740:CDS 40.0%
ACCTAAAGAGGGTTGTTCAA+AGG - chr2_4:43600881-43600900 Msa0329740:intron 40.0%
! AAAGGCTTCCATGGTGATTT+TGG - chr2_4:43600899-43600918 Msa0329740:intron 40.0%
AAGAGGAACATTCTCACAAG+AGG - chr2_4:43601385-43601404 Msa0329740:intron 40.0%
GTTGAACTTCATGCAGTACT+AGG - chr2_4:43601422-43601441 Msa0329740:intron 40.0%
GTTAAGCAAGAGTGATAAGG+AGG - chr2_4:43601498-43601517 Msa0329740:intron 40.0%
ATTTCATTGTCTGTCCTTCC+CGG + chr2_4:43601636-43601655 None:intergenic 40.0%
CATGTTTGAAGAAGAGACTG+AGG - chr2_4:43601673-43601692 Msa0329740:intron 40.0%
AAGAAGAGACTGAGGCAAAA+AGG - chr2_4:43601681-43601700 Msa0329740:intron 40.0%
CATTCAACCCTCAGATTTGA+TGG - chr2_4:43601899-43601918 Msa0329740:intron 40.0%
ATCACTTGGGTAAAACCCTT+TGG - chr2_4:43602121-43602140 Msa0329740:intron 40.0%
TTATAGAGTGCAATGGGCAT+AGG - chr2_4:43602311-43602330 Msa0329740:CDS 40.0%
TAAAGGAGACTTCAACTGCA+AGG + chr2_4:43602421-43602440 None:intergenic 40.0%
! TGAAGTCTCCTTTAGTTCCA+AGG - chr2_4:43602427-43602446 Msa0329740:intron 40.0%
TCAGGTATCAATGGTTTCCT+TGG + chr2_4:43602447-43602466 None:intergenic 40.0%
CATTCATGTTCAGTTGCTTC+TGG - chr2_4:43602491-43602510 Msa0329740:intron 40.0%
AAAGAACTGCAACTTCTGTG+AGG - chr2_4:43602620-43602639 Msa0329740:intron 40.0%
TGAACGTGCACAAAGAAGAA+AGG - chr2_4:43602693-43602712 Msa0329740:CDS 40.0%
!! CAATACTTCTTTGGAGCAGG+TGG + chr2_4:43599684-43599703 None:intergenic 45.0%
!! GGTCTTTTGGGAGTGAAGAA+AGG - chr2_4:43599763-43599782 Msa0329740:intron 45.0%
! GGAGTGAAGAAAGGCCTTTT+GGG - chr2_4:43599772-43599791 Msa0329740:intron 45.0%
!! GAAAGGCCTTTTGGGAAGAA+TGG - chr2_4:43599780-43599799 Msa0329740:intron 45.0%
GACTATTGGTACAAGACACG+TGG - chr2_4:43600631-43600650 Msa0329740:CDS 45.0%
TGGTATCAAAGTATGCGCCT+TGG - chr2_4:43600651-43600670 Msa0329740:CDS 45.0%
TGCAAGTCAAGAGAAGCCTA+AGG + chr2_4:43600800-43600819 None:intergenic 45.0%
!! GCTTCTCTTGACTTGCACTA+TGG - chr2_4:43600803-43600822 Msa0329740:intron 45.0%
GCCTTTGAACAACCCTCTTT+AGG + chr2_4:43600885-43600904 None:intergenic 45.0%
GATCTTGGGGGCTAATTTCA+TGG - chr2_4:43601102-43601121 Msa0329740:intron 45.0%
AAGAGTGATAAGGAGGTCGA+GGG - chr2_4:43601505-43601524 Msa0329740:intron 45.0%
TGTGAGGTCGTTCAAATCCA+GGG - chr2_4:43602636-43602655 Msa0329740:intron 45.0%
! TTGCTTCTGCTCCAAGCTTT+TGG - chr2_4:43602665-43602684 Msa0329740:CDS 45.0%
CGTTCAGTTGACCAAAAGCT+TGG + chr2_4:43602679-43602698 None:intergenic 45.0%
ACGTGCACAAAGAAGAAAGG+AGG - chr2_4:43602696-43602715 Msa0329740:CDS 45.0%
!!! ATATATTATAATTCTAAAAA+AGG + chr2_4:43599445-43599464 None:intergenic 5.0%
! GGGAGTGAAGAAAGGCCTTT+TGG - chr2_4:43599771-43599790 Msa0329740:intron 50.0%
!! AGGCCTTTTGGGAAGAATGG+TGG - chr2_4:43599783-43599802 Msa0329740:intron 50.0%
GTGCCACCATTCTTCCCAAA+AGG + chr2_4:43599789-43599808 None:intergenic 50.0%
! GTTTCGAGTACAACTGAGCG+TGG - chr2_4:43600548-43600567 Msa0329740:intron 50.0%
GGGTTGTTCAAAGGCTTCCA+TGG - chr2_4:43600890-43600909 Msa0329740:intron 50.0%
CAAGAGTGATAAGGAGGTCG+AGG - chr2_4:43601504-43601523 Msa0329740:intron 50.0%
TCAAATTGCGGCGCAATTGC+CGG - chr2_4:43601614-43601633 Msa0329740:intron 50.0%
GTGCTTTCTCTCTGAGTCAC+AGG + chr2_4:43601714-43601733 None:intergenic 50.0%
CTGTGAGGTCGTTCAAATCC+AGG - chr2_4:43602635-43602654 Msa0329740:intron 50.0%
ACGGGCAACTGTCAAGCCTT+AGG - chr2_4:43600781-43600800 Msa0329740:intron 55.0%
GTGGTAAGAGCTGCACGCTT+AGG - chr2_4:43601333-43601352 Msa0329740:intron 55.0%
GTAAGAGCTGCACGCTTAGG+TGG - chr2_4:43601336-43601355 Msa0329740:intron 55.0%
CAAATTGCGGCGCAATTGCC+GGG - chr2_4:43601615-43601634 Msa0329740:intron 55.0%
AGCAGAAGCAACAGTTGCCC+TGG + chr2_4:43602656-43602675 None:intergenic 55.0%
CGAGGGCTCGATCTCACTCT+CGG - chr2_4:43601522-43601541 Msa0329740:intron 60.0%
TTGCGGCGCAATTGCCGGGA+AGG - chr2_4:43601619-43601638 Msa0329740:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 43599334 43602721 43599334 ID=Msa0329740;Name=Msa0329740
chr2_4 mRNA 43599334 43602721 43599334 ID=Msa0329740-mRNA-1;Parent=Msa0329740;Name=Msa0329740-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.16|0|0.71|1|1|7|0|225
chr2_4 exon 43602652 43602721 43602652 ID=Msa0329740-mRNA-1:exon:13289;Parent=Msa0329740-mRNA-1
chr2_4 exon 43602254 43602394 43602254 ID=Msa0329740-mRNA-1:exon:13288;Parent=Msa0329740-mRNA-1
chr2_4 exon 43600605 43600734 43600605 ID=Msa0329740-mRNA-1:exon:13287;Parent=Msa0329740-mRNA-1
chr2_4 exon 43600353 43600447 43600353 ID=Msa0329740-mRNA-1:exon:13286;Parent=Msa0329740-mRNA-1
chr2_4 exon 43600191 43600279 43600191 ID=Msa0329740-mRNA-1:exon:13285;Parent=Msa0329740-mRNA-1
chr2_4 exon 43599542 43599629 43599542 ID=Msa0329740-mRNA-1:exon:13284;Parent=Msa0329740-mRNA-1
chr2_4 exon 43599334 43599398 43599334 ID=Msa0329740-mRNA-1:exon:13283;Parent=Msa0329740-mRNA-1
chr2_4 CDS 43602652 43602721 43602652 ID=Msa0329740-mRNA-1:cds;Parent=Msa0329740-mRNA-1
chr2_4 CDS 43602254 43602394 43602254 ID=Msa0329740-mRNA-1:cds;Parent=Msa0329740-mRNA-1
chr2_4 CDS 43600605 43600734 43600605 ID=Msa0329740-mRNA-1:cds;Parent=Msa0329740-mRNA-1
chr2_4 CDS 43600353 43600447 43600353 ID=Msa0329740-mRNA-1:cds;Parent=Msa0329740-mRNA-1
chr2_4 CDS 43600191 43600279 43600191 ID=Msa0329740-mRNA-1:cds;Parent=Msa0329740-mRNA-1
chr2_4 CDS 43599542 43599629 43599542 ID=Msa0329740-mRNA-1:cds;Parent=Msa0329740-mRNA-1
chr2_4 CDS 43599334 43599398 43599334 ID=Msa0329740-mRNA-1:cds;Parent=Msa0329740-mRNA-1
Gene Sequence

>Msa0329740

ATGGCGACTAGCATTAACCGTGTGCACTTTTTCATTTCAGTTCTATGCATTGTTTATGTTTTGTGTGCAGGAGGAAGAGGCTCTGTAACACCACCTGCTCCAAAGAAGTATTGCTTTATCTTAGACCCATGTCGAGATAACGTACAAATCTGTGATGATAATTGTGAAGAAAGGTCTTTTGGGAGTGAAGAAAGGCCTTTTGGGAAGAATGGTTTGCAAAGATGTGGTAAGAGCTGCACGCTTAGGTGGATCAATTACTTAAGACCTGATTTAAAAAGAGGAACATTCTCACAAGAGGAAGAAAATCTCATTGTTGAACTTCATGCAGTACTAGGAAATAGATGGTCTCAAATTGCGGCGCAATTGCCGGGAAGGACAGACAATGAAATAAAGAATCTATGGAACTCATGTTTGAAGAAGAGACTGAGGCAAAAAGAGAGTTCAAAATCAGATGCAGCTTCTAGCTATGAGCAAAGAACAACATCTTCAATTTCACCAAAAGCATATGCAATGGAAATGGAAAAGTTGAAGTCTCCTTTAGTTCCAAGGAAACCATTGATACCTGATAACAAGAAACATTCTAACGAGGACATTCATGTTCAGTTGCTTCTGGGGCAACTGTTGCTTCTGCTCCAAGCTTTTGGTCAACTGAACGTGCACAAAGAAGAAAGGAGGTAA
Protein sequence

>Msa0329740

MATSINRVHFFISVLCIVYVLCAGGRGSVTPPAPKKYCFILDPCRDNVQICDDNCEERSFGSEERPFGKNGLQRCGKSCTLRWINYLRPDLKRGTFSQEEENLIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQKESSKSDAASSYEQRTTSSISPKAYAMEMEKLKSPLVPRKPLIPDNKKHSNEDIHVQLLLGQLLLLLQAFGQLNVHKEERR*