Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331860 | XP_003597970.4 | 86.897 | 290 | 27 | 4 | 2 | 289 | 15 | 295 | 2.13e-171 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331860 | sp|Q9T072|BH025_ARATH | 34.872 | 195 | 124 | 3 | 87 | 281 | 133 | 324 | 2.39e-27 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0331860 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331860 | MtrunA17_Chr2g0333631 | 77.483 | 151 | 26 | 3 | 3 | 152 | 1 | 144 | 4.79e-71 | 216 |
| Msa0331860 | MtrunA17_Chr2g0333621 | 41.980 | 293 | 144 | 10 | 12 | 283 | 25 | 312 | 1.18e-57 | 187 |
| Msa0331860 | MtrunA17_Chr4g0002801 | 45.188 | 239 | 119 | 5 | 48 | 282 | 100 | 330 | 1.01e-55 | 182 |
| Msa0331860 | MtrunA17_Chr2g0333641 | 41.414 | 297 | 144 | 9 | 8 | 283 | 21 | 308 | 1.74e-54 | 179 |
| Msa0331860 | MtrunA17_Chr4g0002781 | 41.667 | 240 | 130 | 5 | 48 | 282 | 115 | 349 | 1.69e-49 | 167 |
| Msa0331860 | MtrunA17_Chr8g0336681 | 43.651 | 252 | 125 | 8 | 41 | 282 | 91 | 335 | 3.30e-47 | 161 |
| Msa0331860 | MtrunA17_Chr2g0333611 | 40.642 | 187 | 100 | 4 | 99 | 282 | 37 | 215 | 1.65e-37 | 132 |
| Msa0331860 | MtrunA17_Chr5g0400621 | 40.556 | 180 | 102 | 2 | 100 | 278 | 150 | 325 | 4.87e-32 | 121 |
| Msa0331860 | MtrunA17_Chr5g0400661 | 36.757 | 185 | 107 | 2 | 108 | 282 | 150 | 334 | 1.37e-31 | 119 |
| Msa0331860 | MtrunA17_Chr7g0249811 | 32.830 | 265 | 156 | 3 | 18 | 282 | 86 | 328 | 2.18e-31 | 119 |
| Msa0331860 | MtrunA17_Chr6g0468491 | 29.766 | 299 | 178 | 6 | 3 | 278 | 16 | 305 | 8.06e-31 | 117 |
| Msa0331860 | MtrunA17_Chr2g0333541 | 34.875 | 281 | 153 | 7 | 9 | 278 | 3 | 264 | 2.52e-29 | 112 |
| Msa0331860 | MtrunA17_Chr4g0049331 | 32.411 | 253 | 159 | 6 | 33 | 283 | 66 | 308 | 1.16e-28 | 111 |
| Msa0331860 | MtrunA17_Chr4g0054561 | 31.698 | 265 | 161 | 7 | 22 | 281 | 75 | 324 | 2.96e-27 | 108 |
| Msa0331860 | MtrunA17_Chr2g0280161 | 36.047 | 172 | 106 | 2 | 108 | 278 | 178 | 346 | 4.89e-27 | 108 |
| Msa0331860 | MtrunA17_Chr2g0307131 | 36.994 | 173 | 104 | 3 | 108 | 279 | 180 | 348 | 4.91e-27 | 108 |
| Msa0331860 | MtrunA17_Chr5g0400671 | 32.569 | 218 | 132 | 3 | 74 | 282 | 112 | 323 | 6.63e-27 | 107 |
| Msa0331860 | MtrunA17_Chr4g0002831 | 37.647 | 170 | 81 | 3 | 118 | 281 | 53 | 203 | 9.07e-27 | 103 |
| Msa0331860 | MtrunA17_Chr4g0054581 | 33.498 | 203 | 126 | 4 | 84 | 278 | 169 | 370 | 1.04e-26 | 107 |
| Msa0331860 | MtrunA17_Chr7g0233441 | 40.123 | 162 | 71 | 4 | 123 | 278 | 51 | 192 | 4.39e-26 | 102 |
| Msa0331860 | MtrunA17_Chr2g0307141 | 35.838 | 173 | 106 | 3 | 108 | 279 | 184 | 352 | 8.73e-26 | 104 |
| Msa0331860 | MtrunA17_Chr4g0033291 | 32.520 | 246 | 135 | 8 | 48 | 282 | 99 | 324 | 5.05e-25 | 102 |
| Msa0331860 | MtrunA17_Chr4g0054551 | 31.321 | 265 | 162 | 7 | 22 | 281 | 75 | 324 | 1.20e-24 | 100 |
| Msa0331860 | MtrunA17_Chr4g0054571 | 34.583 | 240 | 123 | 6 | 63 | 282 | 104 | 329 | 2.12e-24 | 100 |
| Msa0331860 | MtrunA17_Chr4g0033391 | 34.254 | 181 | 101 | 5 | 108 | 282 | 148 | 316 | 5.53e-24 | 99.4 |
| Msa0331860 | MtrunA17_Chr4g0054621 | 30.000 | 180 | 114 | 2 | 100 | 278 | 165 | 333 | 5.31e-23 | 96.7 |
| Msa0331860 | MtrunA17_Chr5g0400641 | 36.478 | 159 | 98 | 1 | 110 | 268 | 1 | 156 | 6.71e-23 | 92.4 |
| Msa0331860 | MtrunA17_Chr4g0002851 | 36.646 | 161 | 80 | 3 | 118 | 278 | 54 | 192 | 1.47e-22 | 92.4 |
| Msa0331860 | MtrunA17_Chr7g0225901 | 35.897 | 156 | 95 | 3 | 108 | 262 | 89 | 240 | 1.08e-21 | 91.7 |
| Msa0331860 | MtrunA17_Chr4g0033281 | 32.749 | 171 | 108 | 1 | 108 | 278 | 154 | 317 | 1.11e-19 | 87.4 |
| Msa0331860 | MtrunA17_Chr6g0468461 | 32.143 | 224 | 124 | 7 | 43 | 262 | 112 | 311 | 2.93e-19 | 86.7 |
| Msa0331860 | MtrunA17_Chr8g0386921 | 28.977 | 176 | 98 | 4 | 108 | 258 | 407 | 580 | 1.36e-11 | 64.7 |
| Msa0331860 | MtrunA17_Chr1g0185621 | 29.054 | 148 | 82 | 3 | 108 | 241 | 476 | 614 | 3.53e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331860 | AT4G37850.2 | 34.872 | 195 | 124 | 3 | 87 | 281 | 133 | 324 | 2.42e-28 | 111 |
| Msa0331860 | AT4G37850.1 | 34.872 | 195 | 124 | 3 | 87 | 281 | 133 | 324 | 2.42e-28 | 111 |
| Msa0331860 | AT2G22760.1 | 36.316 | 190 | 110 | 4 | 99 | 282 | 111 | 295 | 4.94e-28 | 110 |
| Msa0331860 | AT2G22760.2 | 36.686 | 169 | 97 | 3 | 99 | 262 | 111 | 274 | 2.84e-24 | 99.8 |
| Msa0331860 | AT2G22770.1 | 32.240 | 183 | 112 | 2 | 108 | 278 | 133 | 315 | 9.34e-24 | 99.0 |
| Msa0331860 | AT2G22750.2 | 32.743 | 226 | 115 | 4 | 77 | 277 | 84 | 297 | 1.11e-23 | 98.6 |
| Msa0331860 | AT2G22750.3 | 32.743 | 226 | 115 | 4 | 77 | 277 | 112 | 325 | 1.83e-23 | 98.2 |
| Msa0331860 | AT2G22750.5 | 32.743 | 226 | 115 | 4 | 77 | 277 | 108 | 321 | 2.05e-23 | 98.2 |
| Msa0331860 | AT2G22750.1 | 32.743 | 226 | 114 | 5 | 77 | 277 | 84 | 296 | 3.11e-22 | 94.4 |
| Msa0331860 | AT2G22750.4 | 32.743 | 226 | 114 | 5 | 77 | 277 | 112 | 324 | 4.70e-22 | 94.4 |
| Msa0331860 | AT4G09820.1 | 31.472 | 197 | 97 | 7 | 98 | 286 | 351 | 517 | 1.33e-13 | 71.2 |
| Msa0331860 | AT1G63650.3 | 28.485 | 165 | 101 | 3 | 91 | 239 | 389 | 552 | 8.94e-11 | 62.8 |
| Msa0331860 | AT1G63650.1 | 28.485 | 165 | 101 | 3 | 91 | 239 | 389 | 552 | 8.94e-11 | 62.8 |
| Msa0331860 | AT1G63650.2 | 28.485 | 165 | 101 | 3 | 91 | 239 | 389 | 552 | 8.94e-11 | 62.8 |
Find 56 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTATTAATCTTCTCTTCTT+TGG | 0.221402 | 2_4:+47937567 | None:intergenic |
| TCCTTATTGAGAAGTATTAT+TGG | 0.225366 | 2_4:+47936820 | None:intergenic |
| TGCAATTCAACTCAAAATAT+TGG | 0.298651 | 2_4:-47936656 | Msa0331860:CDS |
| ACCAATAATACTTCTCAATA+AGG | 0.315967 | 2_4:-47936821 | Msa0331860:CDS |
| TGTTATACAGGACATGGATA+TGG | 0.346253 | 2_4:-47937854 | None:intergenic |
| ACAGGACATGGATATGGATA+TGG | 0.352507 | 2_4:-47937848 | None:intergenic |
| ACATCAGGAAGCAATTCATT+TGG | 0.411022 | 2_4:+47936736 | None:intergenic |
| TGATTCAAAGCTTATATTTG+AGG | 0.412613 | 2_4:+47937612 | None:intergenic |
| AATCTTCGTGGCAGCGGTGG+CGG | 0.416309 | 2_4:+47937744 | None:intergenic |
| AGCACCAGCGTATTGCCGTT+TGG | 0.418325 | 2_4:-47936601 | Msa0331860:CDS |
| CTTCCCTGGTATTGTGGCTA+TGG | 0.426831 | 2_4:+47937669 | None:intergenic |
| GCGGCTCCGGCTACTATAGA+TGG | 0.428100 | 2_4:+47937763 | None:intergenic |
| CGTGGCAGCGGTGGCGGCTC+CGG | 0.438466 | 2_4:+47937750 | None:intergenic |
| GACACTTTCACTTTGACATC+AGG | 0.450201 | 2_4:+47936721 | None:intergenic |
| TTTCATTACTATCATCGCTC+AGG | 0.462850 | 2_4:-47936566 | Msa0331860:intron |
| CTCAATAAGGAAAATTCTTG+TGG | 0.478392 | 2_4:-47936808 | Msa0331860:CDS |
| CGCCAAGGAATTCACCATCT+TGG | 0.480758 | 2_4:+47937803 | None:intergenic |
| GACAAGGCCTCTATAGTTCA+AGG | 0.488754 | 2_4:-47936919 | Msa0331860:CDS |
| CGGCGAGCTTGCAATCTTCG+TGG | 0.489491 | 2_4:+47937732 | None:intergenic |
| GCTTGCAATCTTCGTGGCAG+CGG | 0.490965 | 2_4:+47937738 | None:intergenic |
| TTTGGACTTCCCTGGTATTG+TGG | 0.495026 | 2_4:+47937663 | None:intergenic |
| CACCAAGATGGTGAATTCCT+TGG | 0.497019 | 2_4:-47937805 | Msa0331860:CDS |
| TGGATCTAGCGGATAACATA+AGG | 0.501788 | 2_4:-47935695 | Msa0331860:CDS |
| CACGAAGATTGCAAGCTCGC+CGG | 0.503233 | 2_4:-47937731 | Msa0331860:CDS |
| AATTCCATAGCCACAATACC+AGG | 0.516400 | 2_4:-47937673 | Msa0331860:CDS |
| TGAATTCCTTGGCGACTACA+TGG | 0.522050 | 2_4:-47937794 | Msa0331860:CDS |
| ACACACTGGCAGAGAGGAGA+AGG | 0.529594 | 2_4:-47937519 | Msa0331860:CDS |
| GAAGAGAGAATGCTAGTGCT+AGG | 0.534839 | 2_4:+47937700 | None:intergenic |
| CAAGGAATTCACCATCTTGG+TGG | 0.540396 | 2_4:+47937806 | None:intergenic |
| AAAGGTGGTTTGGACTTCCC+TGG | 0.544519 | 2_4:+47937655 | None:intergenic |
| ACATGGATATGGATATGGAT+TGG | 0.544854 | 2_4:-47937843 | Msa0331860:CDS |
| GATAGCGCCTTGAACTATAG+AGG | 0.545601 | 2_4:+47936912 | None:intergenic |
| TGTAGATGGGTGATGCATAC+AGG | 0.548489 | 2_4:-47935728 | Msa0331860:intron |
| AAGATTCATTTCACTAGATG+TGG | 0.551691 | 2_4:+47936774 | None:intergenic |
| AAACGGCAATACGCTGGTGC+TGG | 0.555816 | 2_4:+47936603 | None:intergenic |
| TGCAATCTTCGTGGCAGCGG+TGG | 0.556907 | 2_4:+47937741 | None:intergenic |
| CTAGTGCTAGGAAGCAGCTC+CGG | 0.573968 | 2_4:+47937712 | None:intergenic |
| CAACAACCATCTATAGTAGC+CGG | 0.584716 | 2_4:-47937769 | Msa0331860:CDS |
| AAAAGAGTTGAATTGCCAAA+CGG | 0.586159 | 2_4:+47936586 | None:intergenic |
| TTTATTACCTTCGTTGAGCG+AGG | 0.586963 | 2_4:+47937451 | None:intergenic |
| GAATCGATGTGCCACCAAGA+TGG | 0.596035 | 2_4:-47937817 | Msa0331860:CDS |
| CATTTACATCAATTGTGAGA+AGG | 0.601314 | 2_4:-47936683 | Msa0331860:CDS |
| GAATCAAAAGCAAATGACAA+AGG | 0.608381 | 2_4:-47937595 | Msa0331860:CDS |
| GGATAACATAAGGAAACTGT+TGG | 0.609049 | 2_4:-47935685 | Msa0331860:CDS |
| TATAATTCCTCGCTCAACGA+AGG | 0.620367 | 2_4:-47937458 | Msa0331860:intron |
| GAAGTACAACAAAACAAGAG+AGG | 0.639060 | 2_4:-47936850 | Msa0331860:CDS |
| TGCATACAGGATGACGATGA+TGG | 0.639126 | 2_4:-47935715 | Msa0331860:CDS |
| AAAGACTCTATTTCACACAC+TGG | 0.641330 | 2_4:-47937533 | Msa0331860:CDS |
| GTTGTGCCATGTAGTCGCCA+AGG | 0.642754 | 2_4:+47937788 | None:intergenic |
| ATAAGGAAACTGTTGGTGAG+TGG | 0.643646 | 2_4:-47935678 | Msa0331860:CDS |
| ATTGCCAAACGGCAATACGC+TGG | 0.648172 | 2_4:+47936597 | None:intergenic |
| TGATGTCAAAGTGAAAGTGT+CGG | 0.659461 | 2_4:-47936719 | Msa0331860:CDS |
| GATGACGATGATGGATCTAG+CGG | 0.664627 | 2_4:-47935706 | Msa0331860:CDS |
| TATTTCACACACTGGCAGAG+AGG | 0.667005 | 2_4:-47937525 | Msa0331860:CDS |
| ATTCCATAGCCACAATACCA+GGG | 0.679504 | 2_4:-47937672 | Msa0331860:CDS |
| TCAAGGCGCTATCAATTACG+TGG | 0.680617 | 2_4:-47936902 | Msa0331860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTATTAATTAATGCAA+GGG | + | chr2_4:47936107-47936126 | None:intergenic | 15.0% |
| !! | TATAATATGATATATAGACA+TGG | - | chr2_4:47937146-47937165 | Msa0331860:intron | 15.0% |
| !!! | AATTTTATCACAATGAATTT+TGG | + | chr2_4:47937459-47937478 | None:intergenic | 15.0% |
| !!! | ATTTTTTTATCATATCTAAC+TGG | - | chr2_4:47937589-47937608 | Msa0331860:CDS | 15.0% |
| !! | CTAGAAAAATAAAAAATCAT+TGG | - | chr2_4:47937615-47937634 | Msa0331860:CDS | 15.0% |
| !! | AAATGTATTAATTAATGCAA+GGG | + | chr2_4:47936107-47936126 | None:intergenic | 15.0% |
| !! | TATAATATGATATATAGACA+TGG | - | chr2_4:47937146-47937165 | Msa0331860:intron | 15.0% |
| !!! | AATTTTATCACAATGAATTT+TGG | + | chr2_4:47937459-47937478 | None:intergenic | 15.0% |
| !!! | ATTTTTTTATCATATCTAAC+TGG | - | chr2_4:47937589-47937608 | Msa0331860:CDS | 15.0% |
| !! | CTAGAAAAATAAAAAATCAT+TGG | - | chr2_4:47937615-47937634 | Msa0331860:CDS | 15.0% |
| !! | AATGTATTAATTAATGCAAG+GGG | + | chr2_4:47936106-47936125 | None:intergenic | 20.0% |
| !! | GAAATGTATTAATTAATGCA+AGG | + | chr2_4:47936108-47936127 | None:intergenic | 20.0% |
| !!! | TACTCCTATATTAACTTTTT+AGG | - | chr2_4:47936279-47936298 | Msa0331860:intron | 20.0% |
| !!! | ACTCCTATATTAACTTTTTA+GGG | - | chr2_4:47936280-47936299 | Msa0331860:intron | 20.0% |
| !! | TTTCCCTAAAAAGTTAATAT+AGG | + | chr2_4:47936286-47936305 | None:intergenic | 20.0% |
| !! | AATGTATTAATTAATGCAAG+GGG | + | chr2_4:47936106-47936125 | None:intergenic | 20.0% |
| !! | GAAATGTATTAATTAATGCA+AGG | + | chr2_4:47936108-47936127 | None:intergenic | 20.0% |
| !!! | TACTCCTATATTAACTTTTT+AGG | - | chr2_4:47936279-47936298 | Msa0331860:intron | 20.0% |
| !!! | ACTCCTATATTAACTTTTTA+GGG | - | chr2_4:47936280-47936299 | Msa0331860:intron | 20.0% |
| !! | TTTCCCTAAAAAGTTAATAT+AGG | + | chr2_4:47936286-47936305 | None:intergenic | 20.0% |
| ! | TGATTCAAAGCTTATATTTG+AGG | + | chr2_4:47935891-47935910 | None:intergenic | 25.0% |
| ! | AGTATTAATCTTCTCTTCTT+TGG | + | chr2_4:47935936-47935955 | None:intergenic | 25.0% |
| ! | ATGTATTAATTAATGCAAGG+GGG | + | chr2_4:47936105-47936124 | None:intergenic | 25.0% |
| !!! | GGGAAAAAAAGAGAATTTTT+TGG | - | chr2_4:47936300-47936319 | Msa0331860:intron | 25.0% |
| ! | AAGATTCATTGAATCATAGA+TGG | + | chr2_4:47936395-47936414 | None:intergenic | 25.0% |
| !!! | TGTTATTGACTCGAATTTAA+TGG | - | chr2_4:47936526-47936545 | Msa0331860:intron | 25.0% |
| ! | AAAACTTCAAAAAAGAGTGA+TGG | - | chr2_4:47936622-47936641 | Msa0331860:CDS | 25.0% |
| ! | ACCAATAATACTTCTCAATA+AGG | - | chr2_4:47936679-47936698 | Msa0331860:CDS | 25.0% |
| !!! | TCCTTATTGAGAAGTATTAT+TGG | + | chr2_4:47936683-47936702 | None:intergenic | 25.0% |
| ! | TGCAATTCAACTCAAAATAT+TGG | - | chr2_4:47936844-47936863 | Msa0331860:CDS | 25.0% |
| ! | AAATGAAAAAGCTATCTTTG+TGG | - | chr2_4:47937287-47937306 | Msa0331860:intron | 25.0% |
| !!! | TTGGCTCTTTTAAATTCTAT+TGG | + | chr2_4:47937440-47937459 | None:intergenic | 25.0% |
| ! | TGATTCAAAGCTTATATTTG+AGG | + | chr2_4:47935891-47935910 | None:intergenic | 25.0% |
| ! | AGTATTAATCTTCTCTTCTT+TGG | + | chr2_4:47935936-47935955 | None:intergenic | 25.0% |
| ! | ATGTATTAATTAATGCAAGG+GGG | + | chr2_4:47936105-47936124 | None:intergenic | 25.0% |
| !!! | GGGAAAAAAAGAGAATTTTT+TGG | - | chr2_4:47936300-47936319 | Msa0331860:intron | 25.0% |
| ! | AAGATTCATTGAATCATAGA+TGG | + | chr2_4:47936395-47936414 | None:intergenic | 25.0% |
| !!! | TGTTATTGACTCGAATTTAA+TGG | - | chr2_4:47936526-47936545 | Msa0331860:intron | 25.0% |
| ! | AAAACTTCAAAAAAGAGTGA+TGG | - | chr2_4:47936622-47936641 | Msa0331860:CDS | 25.0% |
| ! | ACCAATAATACTTCTCAATA+AGG | - | chr2_4:47936679-47936698 | Msa0331860:CDS | 25.0% |
| !!! | TCCTTATTGAGAAGTATTAT+TGG | + | chr2_4:47936683-47936702 | None:intergenic | 25.0% |
| ! | TGCAATTCAACTCAAAATAT+TGG | - | chr2_4:47936844-47936863 | Msa0331860:CDS | 25.0% |
| ! | AAATGAAAAAGCTATCTTTG+TGG | - | chr2_4:47937287-47937306 | Msa0331860:intron | 25.0% |
| !!! | TTGGCTCTTTTAAATTCTAT+TGG | + | chr2_4:47937440-47937459 | None:intergenic | 25.0% |
| GAATCAAAAGCAAATGACAA+AGG | - | chr2_4:47935905-47935924 | Msa0331860:intron | 30.0% | |
| TGTATTAATTAATGCAAGGG+GGG | + | chr2_4:47936104-47936123 | None:intergenic | 30.0% | |
| TTCATTGAATCATAGATGGA+CGG | + | chr2_4:47936391-47936410 | None:intergenic | 30.0% | |
| TTAATACACAATCCAGATCT+CGG | - | chr2_4:47936413-47936432 | Msa0331860:intron | 30.0% | |
| TTCGAGTCAATAACACAATT+TGG | + | chr2_4:47936521-47936540 | None:intergenic | 30.0% | |
| CTCAATAAGGAAAATTCTTG+TGG | - | chr2_4:47936692-47936711 | Msa0331860:CDS | 30.0% | |
| AAGATTCATTTCACTAGATG+TGG | + | chr2_4:47936729-47936748 | None:intergenic | 30.0% | |
| CATTTACATCAATTGTGAGA+AGG | - | chr2_4:47936817-47936836 | Msa0331860:CDS | 30.0% | |
| AAAAGAGTTGAATTGCCAAA+CGG | + | chr2_4:47936917-47936936 | None:intergenic | 30.0% | |
| CATAAAGTCATCCATATTAG+AGG | - | chr2_4:47937678-47937697 | Msa0331860:CDS | 30.0% | |
| GAATCAAAAGCAAATGACAA+AGG | - | chr2_4:47935905-47935924 | Msa0331860:intron | 30.0% | |
| TGTATTAATTAATGCAAGGG+GGG | + | chr2_4:47936104-47936123 | None:intergenic | 30.0% | |
| TTCATTGAATCATAGATGGA+CGG | + | chr2_4:47936391-47936410 | None:intergenic | 30.0% | |
| TTAATACACAATCCAGATCT+CGG | - | chr2_4:47936413-47936432 | Msa0331860:intron | 30.0% | |
| TTCGAGTCAATAACACAATT+TGG | + | chr2_4:47936521-47936540 | None:intergenic | 30.0% | |
| CTCAATAAGGAAAATTCTTG+TGG | - | chr2_4:47936692-47936711 | Msa0331860:CDS | 30.0% | |
| AAGATTCATTTCACTAGATG+TGG | + | chr2_4:47936729-47936748 | None:intergenic | 30.0% | |
| CATTTACATCAATTGTGAGA+AGG | - | chr2_4:47936817-47936836 | Msa0331860:CDS | 30.0% | |
| AAAAGAGTTGAATTGCCAAA+CGG | + | chr2_4:47936917-47936936 | None:intergenic | 30.0% | |
| CATAAAGTCATCCATATTAG+AGG | - | chr2_4:47937678-47937697 | Msa0331860:CDS | 30.0% | |
| ! | TTTAGGGTAAAAAGGTGGTT+TGG | + | chr2_4:47935858-47935877 | None:intergenic | 35.0% |
| !!! | CTCTTTTTAGGGTAAAAAGG+TGG | + | chr2_4:47935863-47935882 | None:intergenic | 35.0% |
| ! | CACCTTTTTACCCTAAAAAG+AGG | - | chr2_4:47935861-47935880 | Msa0331860:intron | 35.0% |
| !!! | GTCCTCTTTTTAGGGTAAAA+AGG | + | chr2_4:47935866-47935885 | None:intergenic | 35.0% |
| ! | TTGAGGAAGTCCTCTTTTTA+GGG | + | chr2_4:47935874-47935893 | None:intergenic | 35.0% |
| ! | TTTGAGGAAGTCCTCTTTTT+AGG | + | chr2_4:47935875-47935894 | None:intergenic | 35.0% |
| AAAGACTCTATTTCACACAC+TGG | - | chr2_4:47935967-47935986 | Msa0331860:intron | 35.0% | |
| TTAACTCATGAGTTAGTACG+TGG | + | chr2_4:47936496-47936515 | None:intergenic | 35.0% | |
| GAAGTACAACAAAACAAGAG+AGG | - | chr2_4:47936650-47936669 | Msa0331860:CDS | 35.0% | |
| ACATCAGGAAGCAATTCATT+TGG | + | chr2_4:47936767-47936786 | None:intergenic | 35.0% | |
| ! | TGATGTCAAAGTGAAAGTGT+CGG | - | chr2_4:47936781-47936800 | Msa0331860:CDS | 35.0% |
| TTTCATTACTATCATCGCTC+AGG | - | chr2_4:47936934-47936953 | Msa0331860:intron | 35.0% | |
| GGGTTTATCTACCTCTAATA+TGG | + | chr2_4:47937692-47937711 | None:intergenic | 35.0% | |
| TGAGTATGTGTATGTGTAGA+TGG | - | chr2_4:47937758-47937777 | Msa0331860:CDS | 35.0% | |
| GAGTATGTGTATGTGTAGAT+GGG | - | chr2_4:47937759-47937778 | Msa0331860:CDS | 35.0% | |
| GGATAACATAAGGAAACTGT+TGG | - | chr2_4:47937815-47937834 | Msa0331860:CDS | 35.0% | |
| ! | TTTAGGGTAAAAAGGTGGTT+TGG | + | chr2_4:47935858-47935877 | None:intergenic | 35.0% |
| !!! | CTCTTTTTAGGGTAAAAAGG+TGG | + | chr2_4:47935863-47935882 | None:intergenic | 35.0% |
| ! | CACCTTTTTACCCTAAAAAG+AGG | - | chr2_4:47935861-47935880 | Msa0331860:intron | 35.0% |
| !!! | GTCCTCTTTTTAGGGTAAAA+AGG | + | chr2_4:47935866-47935885 | None:intergenic | 35.0% |
| ! | TTGAGGAAGTCCTCTTTTTA+GGG | + | chr2_4:47935874-47935893 | None:intergenic | 35.0% |
| ! | TTTGAGGAAGTCCTCTTTTT+AGG | + | chr2_4:47935875-47935894 | None:intergenic | 35.0% |
| AAAGACTCTATTTCACACAC+TGG | - | chr2_4:47935967-47935986 | Msa0331860:intron | 35.0% | |
| TTAACTCATGAGTTAGTACG+TGG | + | chr2_4:47936496-47936515 | None:intergenic | 35.0% | |
| GAAGTACAACAAAACAAGAG+AGG | - | chr2_4:47936650-47936669 | Msa0331860:CDS | 35.0% | |
| ACATCAGGAAGCAATTCATT+TGG | + | chr2_4:47936767-47936786 | None:intergenic | 35.0% | |
| ! | TGATGTCAAAGTGAAAGTGT+CGG | - | chr2_4:47936781-47936800 | Msa0331860:CDS | 35.0% |
| TTTCATTACTATCATCGCTC+AGG | - | chr2_4:47936934-47936953 | Msa0331860:intron | 35.0% | |
| GGGTTTATCTACCTCTAATA+TGG | + | chr2_4:47937692-47937711 | None:intergenic | 35.0% | |
| TGAGTATGTGTATGTGTAGA+TGG | - | chr2_4:47937758-47937777 | Msa0331860:CDS | 35.0% | |
| GAGTATGTGTATGTGTAGAT+GGG | - | chr2_4:47937759-47937778 | Msa0331860:CDS | 35.0% | |
| GGATAACATAAGGAAACTGT+TGG | - | chr2_4:47937815-47937834 | Msa0331860:CDS | 35.0% | |
| CAACAACCATCTATAGTAGC+CGG | - | chr2_4:47935731-47935750 | Msa0331860:intron | 40.0% | |
| AATTCCATAGCCACAATACC+AGG | - | chr2_4:47935827-47935846 | Msa0331860:intron | 40.0% | |
| ATTCCATAGCCACAATACCA+GGG | - | chr2_4:47935828-47935847 | Msa0331860:intron | 40.0% | |
| TATAATTCCTCGCTCAACGA+AGG | - | chr2_4:47936042-47936061 | Msa0331860:intron | 40.0% | |
| TTTATTACCTTCGTTGAGCG+AGG | + | chr2_4:47936052-47936071 | None:intergenic | 40.0% | |
| GACACTTTCACTTTGACATC+AGG | + | chr2_4:47936782-47936801 | None:intergenic | 40.0% | |
| TGTCAGCACTCAACTTTGTA+CGG | + | chr2_4:47937714-47937733 | None:intergenic | 40.0% | |
| !! | AAAGTTGAGTGCTGACACAA+CGG | - | chr2_4:47937717-47937736 | Msa0331860:CDS | 40.0% |
| ! | TGGATCTAGCGGATAACATA+AGG | - | chr2_4:47937805-47937824 | Msa0331860:CDS | 40.0% |
| ! | ATAAGGAAACTGTTGGTGAG+TGG | - | chr2_4:47937822-47937841 | Msa0331860:CDS | 40.0% |
| CAACAACCATCTATAGTAGC+CGG | - | chr2_4:47935731-47935750 | Msa0331860:intron | 40.0% | |
| AATTCCATAGCCACAATACC+AGG | - | chr2_4:47935827-47935846 | Msa0331860:intron | 40.0% | |
| ATTCCATAGCCACAATACCA+GGG | - | chr2_4:47935828-47935847 | Msa0331860:intron | 40.0% | |
| TATAATTCCTCGCTCAACGA+AGG | - | chr2_4:47936042-47936061 | Msa0331860:intron | 40.0% | |
| TTTATTACCTTCGTTGAGCG+AGG | + | chr2_4:47936052-47936071 | None:intergenic | 40.0% | |
| GACACTTTCACTTTGACATC+AGG | + | chr2_4:47936782-47936801 | None:intergenic | 40.0% | |
| TGTCAGCACTCAACTTTGTA+CGG | + | chr2_4:47937714-47937733 | None:intergenic | 40.0% | |
| !! | AAAGTTGAGTGCTGACACAA+CGG | - | chr2_4:47937717-47937736 | Msa0331860:CDS | 40.0% |
| ! | TGGATCTAGCGGATAACATA+AGG | - | chr2_4:47937805-47937824 | Msa0331860:CDS | 40.0% |
| ! | ATAAGGAAACTGTTGGTGAG+TGG | - | chr2_4:47937822-47937841 | Msa0331860:CDS | 40.0% |
| CAAGGAATTCACCATCTTGG+TGG | + | chr2_4:47935697-47935716 | None:intergenic | 45.0% | |
| CACCAAGATGGTGAATTCCT+TGG | - | chr2_4:47935695-47935714 | Msa0331860:CDS | 45.0% | |
| TGAATTCCTTGGCGACTACA+TGG | - | chr2_4:47935706-47935725 | Msa0331860:CDS | 45.0% | |
| GAAGAGAGAATGCTAGTGCT+AGG | + | chr2_4:47935803-47935822 | None:intergenic | 45.0% | |
| TTTGGACTTCCCTGGTATTG+TGG | + | chr2_4:47935840-47935859 | None:intergenic | 45.0% | |
| TATTTCACACACTGGCAGAG+AGG | - | chr2_4:47935975-47935994 | Msa0331860:intron | 45.0% | |
| TGTGTGAAACTACCGAGATC+TGG | + | chr2_4:47936428-47936447 | None:intergenic | 45.0% | |
| TTAGTACGTGGACGCAGTTA+CGG | + | chr2_4:47936484-47936503 | None:intergenic | 45.0% | |
| ! | TCCTTTTCGACAGACAGACA+AGG | - | chr2_4:47936565-47936584 | Msa0331860:intron | 45.0% |
| GACAAGGCCTCTATAGTTCA+AGG | - | chr2_4:47936581-47936600 | Msa0331860:CDS | 45.0% | |
| GATAGCGCCTTGAACTATAG+AGG | + | chr2_4:47936591-47936610 | None:intergenic | 45.0% | |
| ! | TCAAGGCGCTATCAATTACG+TGG | - | chr2_4:47936598-47936617 | Msa0331860:CDS | 45.0% |
| TCAGCACTCAACTTTGTACG+GGG | + | chr2_4:47937712-47937731 | None:intergenic | 45.0% | |
| GTCAGCACTCAACTTTGTAC+GGG | + | chr2_4:47937713-47937732 | None:intergenic | 45.0% | |
| TGTAGATGGGTGATGCATAC+AGG | - | chr2_4:47937772-47937791 | Msa0331860:CDS | 45.0% | |
| TGCATACAGGATGACGATGA+TGG | - | chr2_4:47937785-47937804 | Msa0331860:CDS | 45.0% | |
| !! | GATGACGATGATGGATCTAG+CGG | - | chr2_4:47937794-47937813 | Msa0331860:CDS | 45.0% |
| CAAGGAATTCACCATCTTGG+TGG | + | chr2_4:47935697-47935716 | None:intergenic | 45.0% | |
| CACCAAGATGGTGAATTCCT+TGG | - | chr2_4:47935695-47935714 | Msa0331860:CDS | 45.0% | |
| TGAATTCCTTGGCGACTACA+TGG | - | chr2_4:47935706-47935725 | Msa0331860:CDS | 45.0% | |
| GAAGAGAGAATGCTAGTGCT+AGG | + | chr2_4:47935803-47935822 | None:intergenic | 45.0% | |
| TTTGGACTTCCCTGGTATTG+TGG | + | chr2_4:47935840-47935859 | None:intergenic | 45.0% | |
| TATTTCACACACTGGCAGAG+AGG | - | chr2_4:47935975-47935994 | Msa0331860:intron | 45.0% | |
| TGTGTGAAACTACCGAGATC+TGG | + | chr2_4:47936428-47936447 | None:intergenic | 45.0% | |
| TTAGTACGTGGACGCAGTTA+CGG | + | chr2_4:47936484-47936503 | None:intergenic | 45.0% | |
| ! | TCCTTTTCGACAGACAGACA+AGG | - | chr2_4:47936565-47936584 | Msa0331860:intron | 45.0% |
| GACAAGGCCTCTATAGTTCA+AGG | - | chr2_4:47936581-47936600 | Msa0331860:CDS | 45.0% | |
| GATAGCGCCTTGAACTATAG+AGG | + | chr2_4:47936591-47936610 | None:intergenic | 45.0% | |
| ! | TCAAGGCGCTATCAATTACG+TGG | - | chr2_4:47936598-47936617 | Msa0331860:CDS | 45.0% |
| TCAGCACTCAACTTTGTACG+GGG | + | chr2_4:47937712-47937731 | None:intergenic | 45.0% | |
| GTCAGCACTCAACTTTGTAC+GGG | + | chr2_4:47937713-47937732 | None:intergenic | 45.0% | |
| TGTAGATGGGTGATGCATAC+AGG | - | chr2_4:47937772-47937791 | Msa0331860:CDS | 45.0% | |
| TGCATACAGGATGACGATGA+TGG | - | chr2_4:47937785-47937804 | Msa0331860:CDS | 45.0% | |
| !! | GATGACGATGATGGATCTAG+CGG | - | chr2_4:47937794-47937813 | Msa0331860:CDS | 45.0% |
| !! | AATATGAATATATAATTTAT+AGG | - | chr2_4:47937486-47937505 | Msa0331860:CDS | 5.0% |
| !! | AATATGAATATATAATTTAT+AGG | - | chr2_4:47937486-47937505 | Msa0331860:CDS | 5.0% |
| GAATCGATGTGCCACCAAGA+TGG | - | chr2_4:47935683-47935702 | Msa0331860:CDS | 50.0% | |
| CGCCAAGGAATTCACCATCT+TGG | + | chr2_4:47935700-47935719 | None:intergenic | 50.0% | |
| CTTCCCTGGTATTGTGGCTA+TGG | + | chr2_4:47935834-47935853 | None:intergenic | 50.0% | |
| ! | AAAGGTGGTTTGGACTTCCC+TGG | + | chr2_4:47935848-47935867 | None:intergenic | 50.0% |
| GCCTTGTCTGTCTGTCGAAA+AGG | + | chr2_4:47936569-47936588 | None:intergenic | 50.0% | |
| ATTGCCAAACGGCAATACGC+TGG | + | chr2_4:47936906-47936925 | None:intergenic | 50.0% | |
| !! | TTGAGTGCTGACACAACGGT+AGG | - | chr2_4:47937721-47937740 | Msa0331860:CDS | 50.0% |
| GAATCGATGTGCCACCAAGA+TGG | - | chr2_4:47935683-47935702 | Msa0331860:CDS | 50.0% | |
| CGCCAAGGAATTCACCATCT+TGG | + | chr2_4:47935700-47935719 | None:intergenic | 50.0% | |
| CTTCCCTGGTATTGTGGCTA+TGG | + | chr2_4:47935834-47935853 | None:intergenic | 50.0% | |
| ! | AAAGGTGGTTTGGACTTCCC+TGG | + | chr2_4:47935848-47935867 | None:intergenic | 50.0% |
| GCCTTGTCTGTCTGTCGAAA+AGG | + | chr2_4:47936569-47936588 | None:intergenic | 50.0% | |
| ATTGCCAAACGGCAATACGC+TGG | + | chr2_4:47936906-47936925 | None:intergenic | 50.0% | |
| !! | TTGAGTGCTGACACAACGGT+AGG | - | chr2_4:47937721-47937740 | Msa0331860:CDS | 50.0% |
| GTTGTGCCATGTAGTCGCCA+AGG | + | chr2_4:47935715-47935734 | None:intergenic | 55.0% | |
| GCTTGCAATCTTCGTGGCAG+CGG | + | chr2_4:47935765-47935784 | None:intergenic | 55.0% | |
| CACGAAGATTGCAAGCTCGC+CGG | - | chr2_4:47935769-47935788 | Msa0331860:intron | 55.0% | |
| CTAGTGCTAGGAAGCAGCTC+CGG | + | chr2_4:47935791-47935810 | None:intergenic | 55.0% | |
| ACACACTGGCAGAGAGGAGA+AGG | - | chr2_4:47935981-47936000 | Msa0331860:intron | 55.0% | |
| AAACGGCAATACGCTGGTGC+TGG | + | chr2_4:47936900-47936919 | None:intergenic | 55.0% | |
| AGCACCAGCGTATTGCCGTT+TGG | - | chr2_4:47936899-47936918 | Msa0331860:CDS | 55.0% | |
| GTTGTGCCATGTAGTCGCCA+AGG | + | chr2_4:47935715-47935734 | None:intergenic | 55.0% | |
| GCTTGCAATCTTCGTGGCAG+CGG | + | chr2_4:47935765-47935784 | None:intergenic | 55.0% | |
| CACGAAGATTGCAAGCTCGC+CGG | - | chr2_4:47935769-47935788 | Msa0331860:intron | 55.0% | |
| CTAGTGCTAGGAAGCAGCTC+CGG | + | chr2_4:47935791-47935810 | None:intergenic | 55.0% | |
| ACACACTGGCAGAGAGGAGA+AGG | - | chr2_4:47935981-47936000 | Msa0331860:intron | 55.0% | |
| AAACGGCAATACGCTGGTGC+TGG | + | chr2_4:47936900-47936919 | None:intergenic | 55.0% | |
| AGCACCAGCGTATTGCCGTT+TGG | - | chr2_4:47936899-47936918 | Msa0331860:CDS | 55.0% | |
| GCGGCTCCGGCTACTATAGA+TGG | + | chr2_4:47935740-47935759 | None:intergenic | 60.0% | |
| AATCTTCGTGGCAGCGGTGG+CGG | + | chr2_4:47935759-47935778 | None:intergenic | 60.0% | |
| TGCAATCTTCGTGGCAGCGG+TGG | + | chr2_4:47935762-47935781 | None:intergenic | 60.0% | |
| CGGCGAGCTTGCAATCTTCG+TGG | + | chr2_4:47935771-47935790 | None:intergenic | 60.0% | |
| GCGGCTCCGGCTACTATAGA+TGG | + | chr2_4:47935740-47935759 | None:intergenic | 60.0% | |
| AATCTTCGTGGCAGCGGTGG+CGG | + | chr2_4:47935759-47935778 | None:intergenic | 60.0% | |
| TGCAATCTTCGTGGCAGCGG+TGG | + | chr2_4:47935762-47935781 | None:intergenic | 60.0% | |
| CGGCGAGCTTGCAATCTTCG+TGG | + | chr2_4:47935771-47935790 | None:intergenic | 60.0% | |
| !! | CGTGGCAGCGGTGGCGGCTC+CGG | + | chr2_4:47935753-47935772 | None:intergenic | 80.0% |
| !! | CGTGGCAGCGGTGGCGGCTC+CGG | + | chr2_4:47935753-47935772 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 47935659 | 47937863 | 47935659 | ID=Msa0331860;Name=Msa0331860 |
| chr2_4 | mRNA | 47935659 | 47937863 | 47935659 | ID=Msa0331860-mRNA-1;Parent=Msa0331860;Name=Msa0331860-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0.5|0|1|1|1|3|0|289 |
| chr2_4 | exon | 47937459 | 47937863 | 47937459 | ID=Msa0331860-mRNA-1:exon:14492;Parent=Msa0331860-mRNA-1 |
| chr2_4 | exon | 47936567 | 47936944 | 47936567 | ID=Msa0331860-mRNA-1:exon:14491;Parent=Msa0331860-mRNA-1 |
| chr2_4 | exon | 47935659 | 47935745 | 47935659 | ID=Msa0331860-mRNA-1:exon:14490;Parent=Msa0331860-mRNA-1 |
| chr2_4 | CDS | 47937459 | 47937863 | 47937459 | ID=Msa0331860-mRNA-1:cds;Parent=Msa0331860-mRNA-1 |
| chr2_4 | CDS | 47936567 | 47936944 | 47936567 | ID=Msa0331860-mRNA-1:cds;Parent=Msa0331860-mRNA-1 |
| chr2_4 | CDS | 47935659 | 47935745 | 47935659 | ID=Msa0331860-mRNA-1:cds;Parent=Msa0331860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
