Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331960 | XP_004487998.1 | 91.566 | 83 | 7 | 0 | 1 | 83 | 1 | 83 | 4.43e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331960 | sp|Q700E3|BH027_ARATH | 71.951 | 82 | 21 | 1 | 1 | 80 | 1 | 82 | 1.45e-34 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0331960 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331960 | MtrunA17_Chr2g0298751 | 91.566 | 83 | 7 | 0 | 1 | 83 | 1 | 83 | 2.45e-51 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331960 | AT4G29930.4 | 71.951 | 82 | 21 | 1 | 1 | 80 | 1 | 82 | 3.36e-36 | 122 |
| Msa0331960 | AT4G29930.2 | 71.951 | 82 | 21 | 1 | 1 | 80 | 1 | 82 | 4.28e-36 | 122 |
| Msa0331960 | AT4G29930.6 | 71.951 | 82 | 21 | 1 | 1 | 80 | 1 | 82 | 5.03e-36 | 122 |
| Msa0331960 | AT4G29930.5 | 71.951 | 82 | 21 | 1 | 1 | 80 | 1 | 82 | 6.04e-36 | 122 |
| Msa0331960 | AT4G29930.1 | 71.951 | 82 | 21 | 1 | 1 | 80 | 1 | 82 | 9.95e-36 | 122 |
| Msa0331960 | AT4G29930.3 | 71.951 | 82 | 21 | 1 | 1 | 80 | 1 | 82 | 1.48e-35 | 122 |
| Msa0331960 | AT4G29930.7 | 71.951 | 82 | 21 | 1 | 1 | 80 | 1 | 82 | 1.48e-35 | 122 |
| Msa0331960 | AT5G57150.5 | 67.442 | 86 | 24 | 3 | 1 | 83 | 1 | 85 | 6.68e-30 | 107 |
| Msa0331960 | AT5G57150.1 | 67.442 | 86 | 24 | 3 | 1 | 83 | 1 | 85 | 1.47e-29 | 106 |
| Msa0331960 | AT5G57150.3 | 64.368 | 87 | 26 | 3 | 1 | 83 | 1 | 86 | 8.18e-29 | 103 |
| Msa0331960 | AT5G57150.2 | 64.368 | 87 | 26 | 3 | 1 | 83 | 1 | 86 | 9.50e-29 | 103 |
| Msa0331960 | AT5G57150.4 | 64.368 | 87 | 26 | 3 | 1 | 83 | 1 | 86 | 6.99e-28 | 102 |
Find 49 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAGGTGGTTGGTTTATT+TGG | 0.165944 | 2_4:-48222430 | None:intergenic |
| TAGCAAAACTCCTTAATAAT+TGG | 0.235419 | 2_4:-48223855 | None:intergenic |
| TGATGATTGAAAGAAGTTTA+AGG | 0.235606 | 2_4:-48222446 | None:intergenic |
| ACCTATCAAGCTCTTGGGTT+TGG | 0.289916 | 2_4:-48222572 | None:intergenic |
| GTGATGAGTACAAGCTTTAC+TGG | 0.315934 | 2_4:+48222532 | Msa0331960:CDS |
| GCATTTCATTAGATGCTCAT+AGG | 0.341879 | 2_4:-48223704 | None:intergenic |
| ATGTTTACCTTGCTAATGTT+TGG | 0.350291 | 2_4:-48222852 | None:intergenic |
| TGTTTACCTTGCTAATGTTT+GGG | 0.357210 | 2_4:-48222851 | None:intergenic |
| TGAGAGCTGCAACGGCTGTT+TGG | 0.367368 | 2_4:-48223667 | None:intergenic |
| ATAACATGTTAAGAAATAAA+TGG | 0.379183 | 2_4:-48223904 | None:intergenic |
| AGCCACTAGTATATAAGTAT+TGG | 0.383506 | 2_4:+48223749 | Msa0331960:three_prime_UTR |
| ATTGTTACCTATCAAGCTCT+TGG | 0.383647 | 2_4:-48222578 | None:intergenic |
| CCTGATGATGCTGCACCATC+GGG | 0.391505 | 2_4:-48222747 | None:intergenic |
| GCCACTAGTATATAAGTATT+GGG | 0.404265 | 2_4:+48223750 | Msa0331960:three_prime_UTR |
| TAGATGCTCATAGGGCTTAG+AGG | 0.411365 | 2_4:-48223695 | None:intergenic |
| TTGTGGTTGCAGCTGGGGAT+TGG | 0.412240 | 2_4:+48222689 | Msa0331960:intron |
| TTGTTACCTATCAAGCTCTT+GGG | 0.420680 | 2_4:-48222577 | None:intergenic |
| TCCTGATGATGCTGCACCAT+CGG | 0.430185 | 2_4:-48222748 | None:intergenic |
| TCCAAACCCAAGAGCTTGAT+AGG | 0.430262 | 2_4:+48222571 | Msa0331960:CDS |
| GTTGTTAAAGTTGAAATTGA+AGG | 0.431964 | 2_4:-48222495 | None:intergenic |
| CATTTCATTAGATGCTCATA+GGG | 0.433690 | 2_4:-48223703 | None:intergenic |
| CCCGATGGTGCAGCATCATC+AGG | 0.443280 | 2_4:+48222747 | Msa0331960:CDS |
| TGAAAGAAGTTTAAGGTGGT+TGG | 0.451251 | 2_4:-48222439 | None:intergenic |
| TATCAAGCTCTTGGGTTTGG+AGG | 0.453409 | 2_4:-48222569 | None:intergenic |
| ACATTGTCTCTGAAAGGAAT+AGG | 0.453984 | 2_4:+48222784 | Msa0331960:CDS |
| AATTGAGTAGGAAGAAGAAA+GGG | 0.460818 | 2_4:-48223830 | None:intergenic |
| AAATTGAGTAGGAAGAAGAA+AGG | 0.501022 | 2_4:-48223831 | None:intergenic |
| TGATGAACTGCTATGAAAAT+CGG | 0.502899 | 2_4:-48223791 | None:intergenic |
| AGTATATAAGTATTGGGTTG+AGG | 0.521733 | 2_4:+48223756 | Msa0331960:three_prime_UTR |
| TTGGGTTTGGAGGAACATGT+TGG | 0.533281 | 2_4:-48222559 | None:intergenic |
| AATTTCAACTTTAACAACCA+TGG | 0.540733 | 2_4:+48222500 | Msa0331960:exon |
| CTAAGAACATTGTCTCTGAA+AGG | 0.544041 | 2_4:+48222778 | Msa0331960:CDS |
| CTCATCACCAATGTTCTCCA+TGG | 0.572679 | 2_4:-48222517 | None:intergenic |
| AGGGTCATTGAGAGCTGCAA+CGG | 0.580316 | 2_4:-48223675 | None:intergenic |
| AGATGCTCATAGGGCTTAGA+GGG | 0.580755 | 2_4:-48223694 | None:intergenic |
| TGATGATGCTGCACCATCGG+GGG | 0.580991 | 2_4:-48222745 | None:intergenic |
| TAATAATTGGAAAATTGAGT+AGG | 0.581054 | 2_4:-48223842 | None:intergenic |
| TGATGAGTACAAGCTTTACT+GGG | 0.584970 | 2_4:+48222533 | Msa0331960:CDS |
| TTAACAACCATGGAGAACAT+TGG | 0.592898 | 2_4:+48222510 | Msa0331960:exon |
| ACCCAATACTTATATACTAG+TGG | 0.593092 | 2_4:-48223751 | None:intergenic |
| ATTGAGTAGGAAGAAGAAAG+GGG | 0.596958 | 2_4:-48223829 | None:intergenic |
| TTGTCTCTGAAAGGAATAGG+AGG | 0.600641 | 2_4:+48222787 | Msa0331960:CDS |
| TTGAGTAGGAAGAAGAAAGG+GGG | 0.617979 | 2_4:-48223828 | None:intergenic |
| ACTCTTTGCACTTAGAGCAG+TGG | 0.626022 | 2_4:+48222827 | Msa0331960:CDS |
| CTATGAAAATCGGAAAGCCA+CGG | 0.645370 | 2_4:-48223781 | None:intergenic |
| CTGATGATGCTGCACCATCG+GGG | 0.660135 | 2_4:-48222746 | None:intergenic |
| AGTGGTCCCAAACATTAGCA+AGG | 0.661525 | 2_4:+48222845 | Msa0331960:CDS |
| AGTATTGGGTTGAGGAACCG+TGG | 0.669067 | 2_4:+48223764 | Msa0331960:three_prime_UTR |
| TGATTGAAAGAAGTTTAAGG+TGG | 0.686687 | 2_4:-48222443 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATTATAACTTATCA+TGG | + | chr2_4:48223300-48223319 | Msa0331960:intron | 10.0% |
| !! | AAAAAAAAGAAAAAAATGAA+AGG | + | chr2_4:48223533-48223552 | Msa0331960:intron | 10.0% |
| !! | AAAAATATTATAACTTATCA+TGG | + | chr2_4:48223300-48223319 | Msa0331960:intron | 10.0% |
| !! | AAAAAAAAGAAAAAAATGAA+AGG | + | chr2_4:48223533-48223552 | Msa0331960:intron | 10.0% |
| !!! | ATTTTATTTTTGGTTACAAT+TGG | - | chr2_4:48223041-48223060 | None:intergenic | 15.0% |
| !!! | TTAATTTTGAAATGTTGAAT+TGG | - | chr2_4:48223073-48223092 | None:intergenic | 15.0% |
| !! | ATAACATGTTAAGAAATAAA+TGG | - | chr2_4:48223907-48223926 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTTGGTTACAAT+TGG | - | chr2_4:48223041-48223060 | None:intergenic | 15.0% |
| !!! | TTAATTTTGAAATGTTGAAT+TGG | - | chr2_4:48223073-48223092 | None:intergenic | 15.0% |
| !! | ATAACATGTTAAGAAATAAA+TGG | - | chr2_4:48223907-48223926 | None:intergenic | 15.0% |
| !!! | ATCTTGATAATTGAGATATA+TGG | + | chr2_4:48222666-48222685 | Msa0331960:intron | 20.0% |
| !! | TGATAATATCTTTATTAGCA+AGG | + | chr2_4:48222972-48222991 | Msa0331960:intron | 20.0% |
| !!! | GAGAGATAGAATTTTATTTT+TGG | - | chr2_4:48223051-48223070 | None:intergenic | 20.0% |
| !! | AGAATTTAGAAGGAATAAAA+AGG | - | chr2_4:48223156-48223175 | None:intergenic | 20.0% |
| !! | TTATTCCTTCTAAATTCTAA+TGG | + | chr2_4:48223158-48223177 | Msa0331960:intron | 20.0% |
| !! | ATAATCCATTAGAATTTAGA+AGG | - | chr2_4:48223166-48223185 | None:intergenic | 20.0% |
| !!! | CTAAATTCTAATGGATTATT+TGG | + | chr2_4:48223167-48223186 | Msa0331960:intron | 20.0% |
| !! | TTTAACTAAAAAATATGGAC+TGG | - | chr2_4:48223249-48223268 | None:intergenic | 20.0% |
| !!! | ATTATGAGGTACTTTTTATA+GGG | - | chr2_4:48223370-48223389 | None:intergenic | 20.0% |
| !!! | AATTATGAGGTACTTTTTAT+AGG | - | chr2_4:48223371-48223390 | None:intergenic | 20.0% |
| !! | TATTACAATGACAAATTATG+AGG | - | chr2_4:48223384-48223403 | None:intergenic | 20.0% |
| !!! | TTTTAATTCAAAATTAGGGA+AGG | + | chr2_4:48223490-48223509 | Msa0331960:intron | 20.0% |
| !! | TTTAATTCAAAATTAGGGAA+GGG | + | chr2_4:48223491-48223510 | Msa0331960:intron | 20.0% |
| !!! | TCCTTTTTTTTTTTTCTTTC+AGG | + | chr2_4:48223607-48223626 | Msa0331960:intron | 20.0% |
| !! | TAATAATTGGAAAATTGAGT+AGG | - | chr2_4:48223845-48223864 | None:intergenic | 20.0% |
| !!! | ACTCAATTTTCCAATTATTA+AGG | + | chr2_4:48223845-48223864 | Msa0331960:three_prime_UTR | 20.0% |
| !!! | ATCTTGATAATTGAGATATA+TGG | + | chr2_4:48222666-48222685 | Msa0331960:intron | 20.0% |
| !! | TGATAATATCTTTATTAGCA+AGG | + | chr2_4:48222972-48222991 | Msa0331960:intron | 20.0% |
| !!! | GAGAGATAGAATTTTATTTT+TGG | - | chr2_4:48223051-48223070 | None:intergenic | 20.0% |
| !! | AGAATTTAGAAGGAATAAAA+AGG | - | chr2_4:48223156-48223175 | None:intergenic | 20.0% |
| !! | TTATTCCTTCTAAATTCTAA+TGG | + | chr2_4:48223158-48223177 | Msa0331960:intron | 20.0% |
| !! | ATAATCCATTAGAATTTAGA+AGG | - | chr2_4:48223166-48223185 | None:intergenic | 20.0% |
| !!! | CTAAATTCTAATGGATTATT+TGG | + | chr2_4:48223167-48223186 | Msa0331960:intron | 20.0% |
| !! | TTTAACTAAAAAATATGGAC+TGG | - | chr2_4:48223249-48223268 | None:intergenic | 20.0% |
| !!! | ATTATGAGGTACTTTTTATA+GGG | - | chr2_4:48223370-48223389 | None:intergenic | 20.0% |
| !!! | AATTATGAGGTACTTTTTAT+AGG | - | chr2_4:48223371-48223390 | None:intergenic | 20.0% |
| !! | TATTACAATGACAAATTATG+AGG | - | chr2_4:48223384-48223403 | None:intergenic | 20.0% |
| !!! | TTTTAATTCAAAATTAGGGA+AGG | + | chr2_4:48223490-48223509 | Msa0331960:intron | 20.0% |
| !! | TTTAATTCAAAATTAGGGAA+GGG | + | chr2_4:48223491-48223510 | Msa0331960:intron | 20.0% |
| !!! | TCCTTTTTTTTTTTTCTTTC+AGG | + | chr2_4:48223607-48223626 | Msa0331960:intron | 20.0% |
| !! | TAATAATTGGAAAATTGAGT+AGG | - | chr2_4:48223845-48223864 | None:intergenic | 20.0% |
| !!! | ACTCAATTTTCCAATTATTA+AGG | + | chr2_4:48223845-48223864 | Msa0331960:three_prime_UTR | 20.0% |
| ! | TGATGATTGAAAGAAGTTTA+AGG | - | chr2_4:48222449-48222468 | None:intergenic | 25.0% |
| ! | GTTGTTAAAGTTGAAATTGA+AGG | - | chr2_4:48222498-48222517 | None:intergenic | 25.0% |
| ! | AATTTCAACTTTAACAACCA+TGG | + | chr2_4:48222500-48222519 | Msa0331960:exon | 25.0% |
| ! | ATAATTGAGATATATGGTTG+TGG | + | chr2_4:48222672-48222691 | Msa0331960:intron | 25.0% |
| ! | CCTTGCTAATAATTATTAGA+GGG | - | chr2_4:48222908-48222927 | None:intergenic | 25.0% |
| ! | ACCTTGCTAATAATTATTAG+AGG | - | chr2_4:48222909-48222928 | None:intergenic | 25.0% |
| !! | TTTTTATAGGGTACATAATG+AGG | - | chr2_4:48223358-48223377 | None:intergenic | 25.0% |
| ! | TTAATTCAAAATTAGGGAAG+GGG | + | chr2_4:48223492-48223511 | Msa0331960:intron | 25.0% |
| ! | GCCTGAAAGAAAAAAAAAAA+AGG | - | chr2_4:48223611-48223630 | None:intergenic | 25.0% |
| ! | TAGCAAAACTCCTTAATAAT+TGG | - | chr2_4:48223858-48223877 | None:intergenic | 25.0% |
| ! | TGATGATTGAAAGAAGTTTA+AGG | - | chr2_4:48222449-48222468 | None:intergenic | 25.0% |
| ! | GTTGTTAAAGTTGAAATTGA+AGG | - | chr2_4:48222498-48222517 | None:intergenic | 25.0% |
| ! | AATTTCAACTTTAACAACCA+TGG | + | chr2_4:48222500-48222519 | Msa0331960:exon | 25.0% |
| ! | ATAATTGAGATATATGGTTG+TGG | + | chr2_4:48222672-48222691 | Msa0331960:intron | 25.0% |
| ! | CCTTGCTAATAATTATTAGA+GGG | - | chr2_4:48222908-48222927 | None:intergenic | 25.0% |
| ! | ACCTTGCTAATAATTATTAG+AGG | - | chr2_4:48222909-48222928 | None:intergenic | 25.0% |
| !! | TTTTTATAGGGTACATAATG+AGG | - | chr2_4:48223358-48223377 | None:intergenic | 25.0% |
| ! | TTAATTCAAAATTAGGGAAG+GGG | + | chr2_4:48223492-48223511 | Msa0331960:intron | 25.0% |
| ! | GCCTGAAAGAAAAAAAAAAA+AGG | - | chr2_4:48223611-48223630 | None:intergenic | 25.0% |
| ! | TAGCAAAACTCCTTAATAAT+TGG | - | chr2_4:48223858-48223877 | None:intergenic | 25.0% |
| !! | TTTAAGGTGGTTGGTTTATT+TGG | - | chr2_4:48222433-48222452 | None:intergenic | 30.0% |
| TGATTGAAAGAAGTTTAAGG+TGG | - | chr2_4:48222446-48222465 | None:intergenic | 30.0% | |
| TCACTTTGATTCAAGTATGA+AGG | + | chr2_4:48222611-48222630 | Msa0331960:intron | 30.0% | |
| TGTTTACCTTGCTAATGTTT+GGG | - | chr2_4:48222854-48222873 | None:intergenic | 30.0% | |
| ATGTTTACCTTGCTAATGTT+TGG | - | chr2_4:48222855-48222874 | None:intergenic | 30.0% | |
| CCCTCTAATAATTATTAGCA+AGG | + | chr2_4:48222905-48222924 | Msa0331960:intron | 30.0% | |
| TAAATTAGTCCCAAAAGAGA+GGG | + | chr2_4:48223099-48223118 | Msa0331960:intron | 30.0% | |
| ! | TTTACTAAACCCTCTCTTTT+GGG | - | chr2_4:48223111-48223130 | None:intergenic | 30.0% |
| ! | TTTTACTAAACCCTCTCTTT+TGG | - | chr2_4:48223112-48223131 | None:intergenic | 30.0% |
| !! | CTAATGGATTATTTGGTTCA+AGG | + | chr2_4:48223174-48223193 | Msa0331960:intron | 30.0% |
| TAGCTAGAAAACAAAGAAAC+AGG | + | chr2_4:48223330-48223349 | Msa0331960:intron | 30.0% | |
| ! | AAAATATATCTAGCTTGACG+TGG | + | chr2_4:48223447-48223466 | Msa0331960:intron | 30.0% |
| TAATTCAAAATTAGGGAAGG+GGG | + | chr2_4:48223493-48223512 | Msa0331960:intron | 30.0% | |
| !!! | TTTTTTCTTTCAGGCAAATG+AGG | + | chr2_4:48223616-48223635 | Msa0331960:intron | 30.0% |
| CATTTCATTAGATGCTCATA+GGG | - | chr2_4:48223706-48223725 | None:intergenic | 30.0% | |
| AGCCACTAGTATATAAGTAT+TGG | + | chr2_4:48223749-48223768 | Msa0331960:three_prime_UTR | 30.0% | |
| GCCACTAGTATATAAGTATT+GGG | + | chr2_4:48223750-48223769 | Msa0331960:three_prime_UTR | 30.0% | |
| ACCCAATACTTATATACTAG+TGG | - | chr2_4:48223754-48223773 | None:intergenic | 30.0% | |
| !! | AGTATATAAGTATTGGGTTG+AGG | + | chr2_4:48223756-48223775 | Msa0331960:three_prime_UTR | 30.0% |
| TGATGAACTGCTATGAAAAT+CGG | - | chr2_4:48223794-48223813 | None:intergenic | 30.0% | |
| AATTGAGTAGGAAGAAGAAA+GGG | - | chr2_4:48223833-48223852 | None:intergenic | 30.0% | |
| AAATTGAGTAGGAAGAAGAA+AGG | - | chr2_4:48223834-48223853 | None:intergenic | 30.0% | |
| !! | TTTAAGGTGGTTGGTTTATT+TGG | - | chr2_4:48222433-48222452 | None:intergenic | 30.0% |
| TGATTGAAAGAAGTTTAAGG+TGG | - | chr2_4:48222446-48222465 | None:intergenic | 30.0% | |
| TCACTTTGATTCAAGTATGA+AGG | + | chr2_4:48222611-48222630 | Msa0331960:intron | 30.0% | |
| TGTTTACCTTGCTAATGTTT+GGG | - | chr2_4:48222854-48222873 | None:intergenic | 30.0% | |
| ATGTTTACCTTGCTAATGTT+TGG | - | chr2_4:48222855-48222874 | None:intergenic | 30.0% | |
| CCCTCTAATAATTATTAGCA+AGG | + | chr2_4:48222905-48222924 | Msa0331960:intron | 30.0% | |
| TAAATTAGTCCCAAAAGAGA+GGG | + | chr2_4:48223099-48223118 | Msa0331960:intron | 30.0% | |
| ! | TTTACTAAACCCTCTCTTTT+GGG | - | chr2_4:48223111-48223130 | None:intergenic | 30.0% |
| ! | TTTTACTAAACCCTCTCTTT+TGG | - | chr2_4:48223112-48223131 | None:intergenic | 30.0% |
| !! | CTAATGGATTATTTGGTTCA+AGG | + | chr2_4:48223174-48223193 | Msa0331960:intron | 30.0% |
| TAGCTAGAAAACAAAGAAAC+AGG | + | chr2_4:48223330-48223349 | Msa0331960:intron | 30.0% | |
| ! | AAAATATATCTAGCTTGACG+TGG | + | chr2_4:48223447-48223466 | Msa0331960:intron | 30.0% |
| TAATTCAAAATTAGGGAAGG+GGG | + | chr2_4:48223493-48223512 | Msa0331960:intron | 30.0% | |
| !!! | TTTTTTCTTTCAGGCAAATG+AGG | + | chr2_4:48223616-48223635 | Msa0331960:intron | 30.0% |
| CATTTCATTAGATGCTCATA+GGG | - | chr2_4:48223706-48223725 | None:intergenic | 30.0% | |
| AGCCACTAGTATATAAGTAT+TGG | + | chr2_4:48223749-48223768 | Msa0331960:three_prime_UTR | 30.0% | |
| GCCACTAGTATATAAGTATT+GGG | + | chr2_4:48223750-48223769 | Msa0331960:three_prime_UTR | 30.0% | |
| ACCCAATACTTATATACTAG+TGG | - | chr2_4:48223754-48223773 | None:intergenic | 30.0% | |
| !! | AGTATATAAGTATTGGGTTG+AGG | + | chr2_4:48223756-48223775 | Msa0331960:three_prime_UTR | 30.0% |
| TGATGAACTGCTATGAAAAT+CGG | - | chr2_4:48223794-48223813 | None:intergenic | 30.0% | |
| AATTGAGTAGGAAGAAGAAA+GGG | - | chr2_4:48223833-48223852 | None:intergenic | 30.0% | |
| AAATTGAGTAGGAAGAAGAA+AGG | - | chr2_4:48223834-48223853 | None:intergenic | 30.0% | |
| ! | TGAAAGAAGTTTAAGGTGGT+TGG | - | chr2_4:48222442-48222461 | None:intergenic | 35.0% |
| TTAACAACCATGGAGAACAT+TGG | + | chr2_4:48222510-48222529 | Msa0331960:exon | 35.0% | |
| TGATGAGTACAAGCTTTACT+GGG | + | chr2_4:48222533-48222552 | Msa0331960:CDS | 35.0% | |
| TTGTTACCTATCAAGCTCTT+GGG | - | chr2_4:48222580-48222599 | None:intergenic | 35.0% | |
| ATTGTTACCTATCAAGCTCT+TGG | - | chr2_4:48222581-48222600 | None:intergenic | 35.0% | |
| CTAAGAACATTGTCTCTGAA+AGG | + | chr2_4:48222778-48222797 | Msa0331960:CDS | 35.0% | |
| ! | ACATTGTCTCTGAAAGGAAT+AGG | + | chr2_4:48222784-48222803 | Msa0331960:CDS | 35.0% |
| CTAAATTAGTCCCAAAAGAG+AGG | + | chr2_4:48223098-48223117 | Msa0331960:intron | 35.0% | |
| ! | TATTTGGTTCAAGGATTCAG+AGG | + | chr2_4:48223183-48223202 | Msa0331960:intron | 35.0% |
| ATTCAGAGGCTAAGTAATTG+TGG | + | chr2_4:48223197-48223216 | Msa0331960:intron | 35.0% | |
| GCATTTCATTAGATGCTCAT+AGG | - | chr2_4:48223707-48223726 | None:intergenic | 35.0% | |
| ATTGAGTAGGAAGAAGAAAG+GGG | - | chr2_4:48223832-48223851 | None:intergenic | 35.0% | |
| ! | TGAAAGAAGTTTAAGGTGGT+TGG | - | chr2_4:48222442-48222461 | None:intergenic | 35.0% |
| TTAACAACCATGGAGAACAT+TGG | + | chr2_4:48222510-48222529 | Msa0331960:exon | 35.0% | |
| TGATGAGTACAAGCTTTACT+GGG | + | chr2_4:48222533-48222552 | Msa0331960:CDS | 35.0% | |
| TTGTTACCTATCAAGCTCTT+GGG | - | chr2_4:48222580-48222599 | None:intergenic | 35.0% | |
| ATTGTTACCTATCAAGCTCT+TGG | - | chr2_4:48222581-48222600 | None:intergenic | 35.0% | |
| CTAAGAACATTGTCTCTGAA+AGG | + | chr2_4:48222778-48222797 | Msa0331960:CDS | 35.0% | |
| ! | ACATTGTCTCTGAAAGGAAT+AGG | + | chr2_4:48222784-48222803 | Msa0331960:CDS | 35.0% |
| CTAAATTAGTCCCAAAAGAG+AGG | + | chr2_4:48223098-48223117 | Msa0331960:intron | 35.0% | |
| ! | TATTTGGTTCAAGGATTCAG+AGG | + | chr2_4:48223183-48223202 | Msa0331960:intron | 35.0% |
| ATTCAGAGGCTAAGTAATTG+TGG | + | chr2_4:48223197-48223216 | Msa0331960:intron | 35.0% | |
| GCATTTCATTAGATGCTCAT+AGG | - | chr2_4:48223707-48223726 | None:intergenic | 35.0% | |
| ATTGAGTAGGAAGAAGAAAG+GGG | - | chr2_4:48223832-48223851 | None:intergenic | 35.0% | |
| GTGATGAGTACAAGCTTTAC+TGG | + | chr2_4:48222532-48222551 | Msa0331960:CDS | 40.0% | |
| !! | GGATTGGATGAAGCTTTTTC+AGG | + | chr2_4:48222705-48222724 | Msa0331960:CDS | 40.0% |
| ! | TTGTCTCTGAAAGGAATAGG+AGG | + | chr2_4:48222787-48222806 | Msa0331960:CDS | 40.0% |
| CTATGAAAATCGGAAAGCCA+CGG | - | chr2_4:48223784-48223803 | None:intergenic | 40.0% | |
| TTGAGTAGGAAGAAGAAAGG+GGG | - | chr2_4:48223831-48223850 | None:intergenic | 40.0% | |
| GTGATGAGTACAAGCTTTAC+TGG | + | chr2_4:48222532-48222551 | Msa0331960:CDS | 40.0% | |
| !! | GGATTGGATGAAGCTTTTTC+AGG | + | chr2_4:48222705-48222724 | Msa0331960:CDS | 40.0% |
| ! | TTGTCTCTGAAAGGAATAGG+AGG | + | chr2_4:48222787-48222806 | Msa0331960:CDS | 40.0% |
| CTATGAAAATCGGAAAGCCA+CGG | - | chr2_4:48223784-48223803 | None:intergenic | 40.0% | |
| TTGAGTAGGAAGAAGAAAGG+GGG | - | chr2_4:48223831-48223850 | None:intergenic | 40.0% | |
| CTCATCACCAATGTTCTCCA+TGG | - | chr2_4:48222520-48222539 | None:intergenic | 45.0% | |
| TTGGGTTTGGAGGAACATGT+TGG | - | chr2_4:48222562-48222581 | None:intergenic | 45.0% | |
| TATCAAGCTCTTGGGTTTGG+AGG | - | chr2_4:48222572-48222591 | None:intergenic | 45.0% | |
| TCCAAACCCAAGAGCTTGAT+AGG | + | chr2_4:48222571-48222590 | Msa0331960:CDS | 45.0% | |
| ACCTATCAAGCTCTTGGGTT+TGG | - | chr2_4:48222575-48222594 | None:intergenic | 45.0% | |
| TATATGGTTGTGGTTGCAGC+TGG | + | chr2_4:48222682-48222701 | Msa0331960:intron | 45.0% | |
| ATATGGTTGTGGTTGCAGCT+GGG | + | chr2_4:48222683-48222702 | Msa0331960:intron | 45.0% | |
| ACTCTTTGCACTTAGAGCAG+TGG | + | chr2_4:48222827-48222846 | Msa0331960:CDS | 45.0% | |
| AGTGGTCCCAAACATTAGCA+AGG | + | chr2_4:48222845-48222864 | Msa0331960:CDS | 45.0% | |
| TAAGTAATTGTGGCTGCTGC+AGG | + | chr2_4:48223207-48223226 | Msa0331960:intron | 45.0% | |
| AGATGCTCATAGGGCTTAGA+GGG | - | chr2_4:48223697-48223716 | None:intergenic | 45.0% | |
| TAGATGCTCATAGGGCTTAG+AGG | - | chr2_4:48223698-48223717 | None:intergenic | 45.0% | |
| CTCATCACCAATGTTCTCCA+TGG | - | chr2_4:48222520-48222539 | None:intergenic | 45.0% | |
| TTGGGTTTGGAGGAACATGT+TGG | - | chr2_4:48222562-48222581 | None:intergenic | 45.0% | |
| TATCAAGCTCTTGGGTTTGG+AGG | - | chr2_4:48222572-48222591 | None:intergenic | 45.0% | |
| TCCAAACCCAAGAGCTTGAT+AGG | + | chr2_4:48222571-48222590 | Msa0331960:CDS | 45.0% | |
| ACCTATCAAGCTCTTGGGTT+TGG | - | chr2_4:48222575-48222594 | None:intergenic | 45.0% | |
| TATATGGTTGTGGTTGCAGC+TGG | + | chr2_4:48222682-48222701 | Msa0331960:intron | 45.0% | |
| ATATGGTTGTGGTTGCAGCT+GGG | + | chr2_4:48222683-48222702 | Msa0331960:intron | 45.0% | |
| ACTCTTTGCACTTAGAGCAG+TGG | + | chr2_4:48222827-48222846 | Msa0331960:CDS | 45.0% | |
| AGTGGTCCCAAACATTAGCA+AGG | + | chr2_4:48222845-48222864 | Msa0331960:CDS | 45.0% | |
| TAAGTAATTGTGGCTGCTGC+AGG | + | chr2_4:48223207-48223226 | Msa0331960:intron | 45.0% | |
| AGATGCTCATAGGGCTTAGA+GGG | - | chr2_4:48223697-48223716 | None:intergenic | 45.0% | |
| TAGATGCTCATAGGGCTTAG+AGG | - | chr2_4:48223698-48223717 | None:intergenic | 45.0% | |
| !!! | TTTTATTTAACTAAAAAATA+TGG | - | chr2_4:48223254-48223273 | None:intergenic | 5.0% |
| !!! | AGTTATAATATTTTTTTTTT+TGG | - | chr2_4:48223295-48223314 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTAATTCAAAATT+AGG | + | chr2_4:48223485-48223504 | Msa0331960:intron | 5.0% |
| !!! | TTTTTTTTAATTCAAAATTA+GGG | + | chr2_4:48223486-48223505 | Msa0331960:intron | 5.0% |
| !!! | TTTTATTTAACTAAAAAATA+TGG | - | chr2_4:48223254-48223273 | None:intergenic | 5.0% |
| !!! | AGTTATAATATTTTTTTTTT+TGG | - | chr2_4:48223295-48223314 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTAATTCAAAATT+AGG | + | chr2_4:48223485-48223504 | Msa0331960:intron | 5.0% |
| !!! | TTTTTTTTAATTCAAAATTA+GGG | + | chr2_4:48223486-48223505 | Msa0331960:intron | 5.0% |
| TATGGTTGTGGTTGCAGCTG+GGG | + | chr2_4:48222684-48222703 | Msa0331960:intron | 50.0% | |
| TATGATTCAAGCTCCCCCGA+TGG | + | chr2_4:48222732-48222751 | Msa0331960:CDS | 50.0% | |
| ! | TCCTGATGATGCTGCACCAT+CGG | - | chr2_4:48222751-48222770 | None:intergenic | 50.0% |
| AGGGTCATTGAGAGCTGCAA+CGG | - | chr2_4:48223678-48223697 | None:intergenic | 50.0% | |
| !! | AGTATTGGGTTGAGGAACCG+TGG | + | chr2_4:48223764-48223783 | Msa0331960:three_prime_UTR | 50.0% |
| TATGGTTGTGGTTGCAGCTG+GGG | + | chr2_4:48222684-48222703 | Msa0331960:intron | 50.0% | |
| TATGATTCAAGCTCCCCCGA+TGG | + | chr2_4:48222732-48222751 | Msa0331960:CDS | 50.0% | |
| ! | TCCTGATGATGCTGCACCAT+CGG | - | chr2_4:48222751-48222770 | None:intergenic | 50.0% |
| AGGGTCATTGAGAGCTGCAA+CGG | - | chr2_4:48223678-48223697 | None:intergenic | 50.0% | |
| !! | AGTATTGGGTTGAGGAACCG+TGG | + | chr2_4:48223764-48223783 | Msa0331960:three_prime_UTR | 50.0% |
| TTGTGGTTGCAGCTGGGGAT+TGG | + | chr2_4:48222689-48222708 | Msa0331960:intron | 55.0% | |
| ! | TGATGATGCTGCACCATCGG+GGG | - | chr2_4:48222748-48222767 | None:intergenic | 55.0% |
| ! | CTGATGATGCTGCACCATCG+GGG | - | chr2_4:48222749-48222768 | None:intergenic | 55.0% |
| ! | CCTGATGATGCTGCACCATC+GGG | - | chr2_4:48222750-48222769 | None:intergenic | 55.0% |
| TGAGAGCTGCAACGGCTGTT+TGG | - | chr2_4:48223670-48223689 | None:intergenic | 55.0% | |
| TTGTGGTTGCAGCTGGGGAT+TGG | + | chr2_4:48222689-48222708 | Msa0331960:intron | 55.0% | |
| ! | TGATGATGCTGCACCATCGG+GGG | - | chr2_4:48222748-48222767 | None:intergenic | 55.0% |
| ! | CTGATGATGCTGCACCATCG+GGG | - | chr2_4:48222749-48222768 | None:intergenic | 55.0% |
| ! | CCTGATGATGCTGCACCATC+GGG | - | chr2_4:48222750-48222769 | None:intergenic | 55.0% |
| TGAGAGCTGCAACGGCTGTT+TGG | - | chr2_4:48223670-48223689 | None:intergenic | 55.0% | |
| CCCGATGGTGCAGCATCATC+AGG | + | chr2_4:48222747-48222766 | Msa0331960:CDS | 60.0% | |
| CCCGATGGTGCAGCATCATC+AGG | + | chr2_4:48222747-48222766 | Msa0331960:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 48222399 | 48223955 | 48222399 | ID=Msa0331960;Name=Msa0331960 |
| chr2_4 | mRNA | 48222399 | 48223955 | 48222399 | ID=Msa0331960-mRNA-1;Parent=Msa0331960;Name=Msa0331960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=120|1|1|1|1|1|3|237|109 |
| chr2_4 | exon | 48222399 | 48222592 | 48222399 | ID=Msa0331960-mRNA-1:exon:14521;Parent=Msa0331960-mRNA-1 |
| chr2_4 | exon | 48222701 | 48222866 | 48222701 | ID=Msa0331960-mRNA-1:exon:14522;Parent=Msa0331960-mRNA-1 |
| chr2_4 | exon | 48223629 | 48223955 | 48223629 | ID=Msa0331960-mRNA-1:exon:14523;Parent=Msa0331960-mRNA-1 |
| chr2_4 | five_prime_UTR | 48222399 | 48222518 | 48222399 | ID=Msa0331960-mRNA-1:five_prime_utr;Parent=Msa0331960-mRNA-1 |
| chr2_4 | CDS | 48222519 | 48222592 | 48222519 | ID=Msa0331960-mRNA-1:cds;Parent=Msa0331960-mRNA-1 |
| chr2_4 | CDS | 48222701 | 48222866 | 48222701 | ID=Msa0331960-mRNA-1:cds;Parent=Msa0331960-mRNA-1 |
| chr2_4 | CDS | 48223629 | 48223718 | 48223629 | ID=Msa0331960-mRNA-1:cds;Parent=Msa0331960-mRNA-1 |
| chr2_4 | three_prime_UTR | 48223719 | 48223955 | 48223719 | ID=Msa0331960-mRNA-1:three_prime_utr;Parent=Msa0331960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
