AlfalfaGEDB | Msa0332290

M. sativa cultivar zhongmu-4 / Msa0332290

KEGG: -
GO: -
PFAM: PF05687.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332290	XP_024631617.1	98.611	72	1	0	1	72	1	72	5.05e-44	155

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332290	sp\|Q5Z9E5\|BZR3_ORYSJ	86.765	68	9	0	5	72	17	84	2.09e-27	105

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0332290	TF	BES1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332290	MtrunA17_Chr2g0315201	98.611	72	1	0	1	72	1	72	4.65e-48	155
Msa0332290	MtrunA17_Chr1g0154651	66.667	81	26	1	6	86	14	93	4.57e-30	107
Msa0332290	MtrunA17_Chr2g0315211	94.444	72	4	0	1	72	1	72	2.05e-28	104
Msa0332290	MtrunA17_Chr3g0141401	77.143	70	16	0	3	72	12	81	1.39e-23	91.7
Msa0332290	MtrunA17_Chr5g0403631	74.157	89	22	1	3	91	6	93	1.51e-22	89.0
Msa0332290	MtrunA17_Chr5g0408851	61.404	57	22	0	17	73	61	117	1.45e-18	79.0

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332290	AT1G78700.1	91.667	72	6	1	72	1	72	4.68e-28	103
Msa0332290	AT4G18890.1	90.278	72	7	1	72	1	72	1.25e-26	99.4
Msa0332290	AT1G19350.5	73.973	73	19	6	78	22	94	8.25e-25	95.5
Msa0332290	AT1G19350.1	73.973	73	19	6	78	22	94	8.25e-25	95.5
Msa0332290	AT1G19350.6	73.973	73	19	6	78	22	94	8.25e-25	95.5
Msa0332290	AT1G19350.4	73.973	73	19	6	78	22	94	8.25e-25	95.5
Msa0332290	AT3G50750.1	83.582	67	11	6	72	14	80	1.44e-24	94.0
Msa0332290	AT1G19350.3	73.973	73	19	6	78	44	116	1.67e-24	94.7
Msa0332290	AT4G36780.1	81.159	69	13	6	74	16	84	1.86e-24	93.2
Msa0332290	AT1G75080.2	72.603	73	20	6	78	23	95	1.14e-22	89.7

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Find 40 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTCTTTGTAATGAAGC+TGG	0.472686	2_4:-49195153	Msa0332290:CDS
AAAGTGTGTAATGAAAATAA+AGG	0.508090	2_4:+49195502	None:intergenic
AAATGCAACCTTTGGATTGA+CGG	0.466530	2_4:-49194651	Msa0332290:CDS
AACTTTGAAGGAGAGAAAGA+GGG	0.529635	2_4:+49195379	None:intergenic
AAGAGAGAGAGAACAACAAG+AGG	0.597645	2_4:-49195278	Msa0332290:CDS
AATCCAAAGGTTGCATTTAG+TGG	0.362338	2_4:+49194656	None:intergenic
AGAAAAGAATTGAACTTTGA+AGG	0.412503	2_4:+49195367	None:intergenic
AGGAGAGAAAGAGGGAGGTG+TGG	0.492949	2_4:+49195387	None:intergenic
AGGTGGAGGGTGATCTTTGT+CGG	0.480030	2_4:+49195457	None:intergenic
AGGTGTGGAAGTAGAAGAAG+TGG	0.501319	2_4:+49195402	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAGAGTAACTCTCAAAA+GGG	+	chr2_4:49194809-49194828	None:intergenic	30.0%
GTTGATGTTAATGAGGATTA+TGG	-	chr2_4:49195510-49195529	Msa0332290:five_prime_UTR	30.0%
ATTGAGAGTAACTCTCAAAA+GGG	+	chr2_4:49194809-49194828	None:intergenic	30.0%
GTTGATGTTAATGAGGATTA+TGG	-	chr2_4:49195510-49195529	Msa0332290:five_prime_UTR	30.0%
AAAGGAAAGGGAAAAAGTGA+AGG	+	chr2_4:49194619-49194638	None:intergenic	35.0%
TGGGGTGTAGTTAGTATATT+TGG	+	chr2_4:49194717-49194736	None:intergenic	35.0%
CATTGAGAGTAACTCTCAAA+AGG	+	chr2_4:49194810-49194829	None:intergenic	35.0%
AAAGCTCTTTGTAATGAAGC+TGG	-	chr2_4:49194983-49195002	Msa0332290:intron	35.0%
TTACGATAAGTTGTTCCATC+AGG	+	chr2_4:49195022-49195041	None:intergenic	35.0%
TGATGGAACAACTTATCGTA+AGG	-	chr2_4:49195021-49195040	Msa0332290:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	49194616	49195542	49194616	ID=Msa0332290;Name=Msa0332290
chr2_4	mRNA	49194616	49195542	49194616	ID=Msa0332290-mRNA-1;Parent=Msa0332290;Name=Msa0332290-mRNA-1;_AED=0.52;_eAED=0.52;_QI=211\|0\|0.5\|0.5\|1\|1\|2\|0\|97
chr2_4	exon	49194616	49194693	49194616	ID=Msa0332290-mRNA-1:exon:14763;Parent=Msa0332290-mRNA-1
chr2_4	exon	49195116	49195542	49195116	ID=Msa0332290-mRNA-1:exon:14762;Parent=Msa0332290-mRNA-1
chr2_4	five_prime_UTR	49195332	49195542	49195332	ID=Msa0332290-mRNA-1:five_prime_utr;Parent=Msa0332290-mRNA-1
chr2_4	CDS	49195116	49195331	49195116	ID=Msa0332290-mRNA-1:cds;Parent=Msa0332290-mRNA-1
chr2_4	CDS	49194616	49194693	49194616	ID=Msa0332290-mRNA-1:cds;Parent=Msa0332290-mRNA-1

Gene Sequence	>Msa0332290 ATGACATCTGGTACAAGACTACCAACATGGAAAGAGAGAGAGAACAACAAGAGGAGAGAGAGAAGAAGAAGAGCTATAGCTGCTAAGATCTTCTCTGGTTTGAGAATGTATGGTAACTTTAGATTACCTAAACATTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTAATGAAGCTGGTTGGTCTGTTGAACCTGATGGAACAACTTATCGTAAGTGTTACAGTCAAATGCCACTAAATGCAACCTTTGGATTGACGGTAGTTGATGTTAATGAGGATTATGGTCGAATGTGA
Protein sequence	>Msa0332290 MTSGTRLPTWKERENNKRRERRRRAIAAKIFSGLRMYGNFRLPKHCDNNEVLKALCNEAGWSVEPDGTTYRKCYSQMPLNATFGLTVVDVNEDYGRM*