Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332480 | XP_003596301.1 | 92.903 | 310 | 22 | 0 | 1 | 310 | 1 | 310 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332480 | sp|K4BIZ9|WRK70_SOLLC | 34.419 | 215 | 122 | 7 | 15 | 225 | 1 | 200 | 1.02e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0332480 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332480 | MtrunA17_Chr2g0315381 | 92.903 | 310 | 22 | 0 | 1 | 310 | 1 | 310 | 0.0 | 573 |
| Msa0332480 | MtrunA17_Chr2g0315361 | 77.778 | 306 | 61 | 6 | 1 | 299 | 1 | 306 | 1.67e-152 | 429 |
| Msa0332480 | MtrunA17_Chr2g0315371 | 69.156 | 308 | 78 | 5 | 1 | 299 | 1 | 300 | 1.67e-145 | 411 |
| Msa0332480 | MtrunA17_Chr7g0244981 | 41.107 | 253 | 121 | 4 | 7 | 259 | 6 | 230 | 2.08e-55 | 181 |
| Msa0332480 | MtrunA17_Chr7g0244971 | 42.544 | 228 | 100 | 5 | 10 | 233 | 10 | 210 | 3.91e-52 | 173 |
| Msa0332480 | MtrunA17_Chr8g0334541 | 41.333 | 225 | 88 | 6 | 13 | 233 | 4 | 188 | 7.18e-43 | 149 |
| Msa0332480 | MtrunA17_Chr8g0350621 | 37.917 | 240 | 106 | 9 | 10 | 240 | 3 | 208 | 1.60e-42 | 147 |
| Msa0332480 | MtrunA17_Chr2g0315401 | 47.761 | 134 | 62 | 4 | 173 | 305 | 20 | 146 | 1.85e-30 | 112 |
| Msa0332480 | MtrunA17_Chr3g0128671 | 38.554 | 166 | 88 | 3 | 60 | 217 | 49 | 208 | 2.87e-28 | 110 |
| Msa0332480 | MtrunA17_Chr2g0315341 | 47.581 | 124 | 60 | 4 | 180 | 301 | 1 | 121 | 7.48e-25 | 97.1 |
| Msa0332480 | MtrunA17_Chr5g0428351 | 29.954 | 217 | 107 | 5 | 12 | 224 | 88 | 263 | 1.84e-24 | 100 |
| Msa0332480 | MtrunA17_Chr8g0387981 | 32.500 | 200 | 100 | 5 | 17 | 203 | 14 | 191 | 3.40e-23 | 98.2 |
| Msa0332480 | MtrunA17_Chr7g0275531 | 47.674 | 86 | 35 | 2 | 127 | 203 | 93 | 177 | 6.82e-20 | 88.6 |
| Msa0332480 | MtrunA17_Chr8g0347251 | 34.177 | 158 | 88 | 4 | 125 | 274 | 110 | 259 | 1.19e-18 | 85.1 |
| Msa0332480 | MtrunA17_Chr8g0350631 | 51.250 | 80 | 34 | 2 | 163 | 240 | 3 | 79 | 3.28e-18 | 80.1 |
| Msa0332480 | MtrunA17_Chr3g0126391 | 43.182 | 88 | 42 | 1 | 124 | 203 | 105 | 192 | 3.66e-18 | 83.6 |
| Msa0332480 | MtrunA17_Chr2g0315351 | 41.129 | 124 | 58 | 7 | 8 | 129 | 6 | 116 | 2.70e-15 | 70.9 |
| Msa0332480 | MtrunA17_Chr2g0315391 | 41.129 | 124 | 58 | 7 | 8 | 129 | 6 | 116 | 3.38e-15 | 70.9 |
| Msa0332480 | MtrunA17_Chr7g0224801 | 47.561 | 82 | 39 | 2 | 137 | 218 | 86 | 163 | 1.53e-14 | 70.5 |
| Msa0332480 | MtrunA17_Chr8g0383351 | 51.667 | 60 | 26 | 1 | 142 | 201 | 158 | 214 | 9.69e-14 | 69.7 |
| Msa0332480 | MtrunA17_Chr8g0350641 | 35.652 | 115 | 52 | 3 | 56 | 164 | 41 | 139 | 1.61e-13 | 66.6 |
| Msa0332480 | MtrunA17_Chr3g0129361 | 50.820 | 61 | 27 | 1 | 142 | 202 | 142 | 199 | 2.54e-13 | 68.2 |
| Msa0332480 | MtrunA17_Chr7g0270191 | 41.111 | 90 | 45 | 2 | 113 | 202 | 119 | 200 | 2.57e-13 | 69.3 |
| Msa0332480 | MtrunA17_Chr7g0263531 | 29.143 | 175 | 104 | 5 | 56 | 215 | 260 | 429 | 1.21e-12 | 68.2 |
| Msa0332480 | MtrunA17_Chr4g0068541 | 47.458 | 59 | 28 | 1 | 143 | 201 | 207 | 262 | 1.80e-12 | 67.4 |
| Msa0332480 | MtrunA17_Chr5g0431811 | 45.312 | 64 | 35 | 0 | 144 | 207 | 672 | 735 | 1.97e-12 | 67.8 |
| Msa0332480 | MtrunA17_Chr5g0418781 | 39.326 | 89 | 48 | 2 | 143 | 228 | 123 | 208 | 3.07e-12 | 65.9 |
| Msa0332480 | MtrunA17_Chr4g0051881 | 37.000 | 100 | 57 | 2 | 137 | 233 | 171 | 267 | 3.81e-12 | 66.2 |
| Msa0332480 | MtrunA17_Chr1g0194481 | 39.773 | 88 | 50 | 1 | 115 | 202 | 129 | 213 | 5.14e-12 | 65.5 |
| Msa0332480 | MtrunA17_Chr5g0418191 | 39.815 | 108 | 54 | 4 | 142 | 242 | 318 | 421 | 6.95e-12 | 65.9 |
| Msa0332480 | MtrunA17_Chr5g0443131 | 49.153 | 59 | 27 | 1 | 143 | 201 | 156 | 211 | 7.14e-12 | 65.1 |
| Msa0332480 | MtrunA17_Chr8g0335811 | 50.000 | 60 | 27 | 1 | 142 | 201 | 152 | 208 | 7.89e-12 | 63.9 |
| Msa0332480 | MtrunA17_Chr2g0294231 | 41.892 | 74 | 40 | 1 | 143 | 216 | 202 | 272 | 1.03e-11 | 65.1 |
| Msa0332480 | MtrunA17_Chr7g0248721 | 42.667 | 75 | 37 | 3 | 137 | 209 | 134 | 204 | 2.40e-11 | 62.4 |
| Msa0332480 | MtrunA17_Chr7g0238921 | 51.667 | 60 | 26 | 1 | 142 | 201 | 122 | 178 | 4.55e-11 | 62.8 |
| Msa0332480 | MtrunA17_Chr7g0218081 | 46.667 | 60 | 29 | 1 | 142 | 201 | 408 | 464 | 5.95e-11 | 63.2 |
| Msa0332480 | MtrunA17_Chr4g0042831 | 34.783 | 138 | 72 | 5 | 104 | 233 | 235 | 362 | 7.06e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332480 | AT5G22570.1 | 34.545 | 165 | 84 | 5 | 55 | 217 | 37 | 179 | 5.49e-24 | 99.4 |
| Msa0332480 | AT5G01900.1 | 35.385 | 195 | 98 | 5 | 12 | 206 | 6 | 172 | 8.47e-24 | 98.2 |
| Msa0332480 | AT3G56400.1 | 31.776 | 214 | 98 | 7 | 7 | 205 | 1 | 181 | 1.12e-22 | 95.9 |
| Msa0332480 | AT1G66600.1 | 51.807 | 83 | 33 | 1 | 143 | 218 | 102 | 184 | 1.18e-22 | 94.7 |
| Msa0332480 | AT1G66560.1 | 44.643 | 112 | 42 | 3 | 144 | 253 | 103 | 196 | 1.62e-22 | 94.7 |
| Msa0332480 | AT1G66550.2 | 42.202 | 109 | 56 | 2 | 138 | 239 | 97 | 205 | 1.79e-22 | 94.4 |
| Msa0332480 | AT1G66550.1 | 42.202 | 109 | 56 | 2 | 138 | 239 | 102 | 210 | 2.41e-22 | 94.4 |
| Msa0332480 | AT2G40750.1 | 32.367 | 207 | 118 | 6 | 12 | 203 | 12 | 211 | 1.28e-20 | 91.3 |
| Msa0332480 | AT1G80590.1 | 41.748 | 103 | 51 | 2 | 145 | 247 | 86 | 179 | 3.29e-20 | 87.8 |
| Msa0332480 | AT2G46400.1 | 30.729 | 192 | 100 | 6 | 12 | 203 | 5 | 163 | 1.40e-19 | 87.4 |
| Msa0332480 | AT2G40740.1 | 27.861 | 201 | 118 | 5 | 17 | 203 | 45 | 232 | 2.75e-19 | 86.7 |
| Msa0332480 | AT2G40740.3 | 27.861 | 201 | 118 | 5 | 17 | 203 | 54 | 241 | 2.90e-19 | 86.7 |
| Msa0332480 | AT4G11070.1 | 26.291 | 213 | 134 | 4 | 1 | 203 | 1 | 200 | 2.31e-18 | 84.3 |
| Msa0332480 | AT4G11070.2 | 32.020 | 203 | 103 | 7 | 1 | 203 | 1 | 168 | 1.17e-17 | 81.6 |
| Msa0332480 | AT4G23810.1 | 36.170 | 141 | 72 | 4 | 106 | 235 | 127 | 260 | 3.05e-17 | 81.3 |
| Msa0332480 | AT5G24110.1 | 30.729 | 192 | 100 | 6 | 12 | 203 | 14 | 172 | 6.77e-17 | 80.1 |
| Msa0332480 | AT2G37260.1 | 38.793 | 116 | 58 | 4 | 94 | 201 | 293 | 403 | 4.03e-13 | 69.7 |
| Msa0332480 | AT5G49520.1 | 50.000 | 60 | 27 | 1 | 143 | 202 | 220 | 276 | 4.14e-13 | 69.7 |
| Msa0332480 | AT2G37260.3 | 38.793 | 116 | 58 | 4 | 94 | 201 | 213 | 323 | 4.92e-13 | 69.3 |
| Msa0332480 | AT2G37260.2 | 38.793 | 116 | 58 | 4 | 94 | 201 | 211 | 321 | 5.10e-13 | 69.3 |
| Msa0332480 | AT2G46130.1 | 50.000 | 66 | 28 | 2 | 137 | 201 | 23 | 84 | 1.52e-12 | 63.5 |
| Msa0332480 | AT2G44745.1 | 49.231 | 65 | 30 | 1 | 137 | 201 | 138 | 199 | 4.80e-12 | 64.7 |
| Msa0332480 | AT4G18170.1 | 41.584 | 101 | 52 | 3 | 102 | 201 | 132 | 226 | 6.32e-12 | 65.9 |
| Msa0332480 | AT1G64000.1 | 48.333 | 60 | 28 | 1 | 142 | 201 | 112 | 168 | 7.27e-12 | 63.9 |
| Msa0332480 | AT1G69310.4 | 44.444 | 63 | 32 | 1 | 143 | 205 | 146 | 205 | 8.23e-12 | 65.1 |
| Msa0332480 | AT1G69310.2 | 44.444 | 63 | 32 | 1 | 143 | 205 | 146 | 205 | 8.23e-12 | 65.1 |
| Msa0332480 | AT1G69310.1 | 44.444 | 63 | 32 | 1 | 143 | 205 | 146 | 205 | 8.23e-12 | 65.1 |
| Msa0332480 | AT1G29860.1 | 40.000 | 90 | 47 | 3 | 143 | 228 | 135 | 221 | 1.06e-11 | 64.7 |
| Msa0332480 | AT4G39410.1 | 48.333 | 60 | 28 | 1 | 142 | 201 | 221 | 277 | 1.82e-11 | 64.3 |
| Msa0332480 | AT2G47260.1 | 38.636 | 88 | 51 | 1 | 115 | 202 | 145 | 229 | 2.51e-11 | 63.9 |
| Msa0332480 | AT2G30590.1 | 33.858 | 127 | 78 | 4 | 79 | 201 | 244 | 368 | 3.23e-11 | 63.9 |
| Msa0332480 | AT1G13960.1 | 48.333 | 60 | 28 | 1 | 142 | 201 | 407 | 463 | 3.25e-11 | 64.3 |
| Msa0332480 | AT5G46350.1 | 47.458 | 59 | 28 | 1 | 143 | 201 | 182 | 237 | 4.18e-11 | 63.2 |
| Msa0332480 | AT5G41570.1 | 40.000 | 75 | 40 | 2 | 137 | 209 | 91 | 162 | 4.93e-11 | 61.2 |
| Msa0332480 | AT5G13080.1 | 47.541 | 61 | 29 | 1 | 142 | 202 | 65 | 122 | 5.35e-11 | 60.5 |
| Msa0332480 | AT2G03340.1 | 48.333 | 60 | 28 | 1 | 142 | 201 | 413 | 469 | 5.71e-11 | 63.5 |
Find 48 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAGATCTCCAGCAATTA+AGG | 0.180671 | 2_4:+49573489 | None:intergenic |
| TTTGCATTCAGATATAAATT+TGG | 0.220659 | 2_4:-49569750 | Msa0332480:CDS |
| TTTCTCTTGTTCGACCCTTT+TGG | 0.253829 | 2_4:+49573289 | None:intergenic |
| GAAACATCTCTAACAGTTAT+AGG | 0.262162 | 2_4:+49573391 | None:intergenic |
| ATTTATATCTGAATGCAAAT+AGG | 0.296186 | 2_4:+49569754 | None:intergenic |
| TTGTACAGGACTACATATTA+TGG | 0.332763 | 2_4:-49569794 | Msa0332480:CDS |
| ATTGCTTTCTTGCCATTTGT+TGG | 0.339828 | 2_4:+49573631 | None:intergenic |
| GAGAATGTTTATGACCAGTT+AGG | 0.367450 | 2_4:-49569464 | Msa0332480:CDS |
| AGAGTCATCTGATGACAAAA+TGG | 0.387666 | 2_4:+49569724 | None:intergenic |
| CCAGTGTTACCCTTAATTGC+TGG | 0.397995 | 2_4:-49573499 | Msa0332480:CDS |
| ATAACCATCAAAATCCTAAC+TGG | 0.409349 | 2_4:+49569450 | None:intergenic |
| ATCATCATGGATCTCTTCCT+TGG | 0.411162 | 2_4:+49569604 | None:intergenic |
| AAATAATGGAGAACCTGCTT+TGG | 0.412237 | 2_4:-49573657 | None:intergenic |
| CTGCTTTGGCTTCCAACAAA+TGG | 0.422018 | 2_4:-49573643 | Msa0332480:CDS |
| GGTCATACTTGGAGAAAGTA+TGG | 0.428672 | 2_4:-49570307 | Msa0332480:CDS |
| TAAGGTCAATTTCACCAACT+TGG | 0.438783 | 2_4:-49570360 | Msa0332480:intron |
| TATAGGAACATCCACATCAT+TGG | 0.441266 | 2_4:+49573408 | None:intergenic |
| CTTCAAAGTTACATGATATG+AGG | 0.441570 | 2_4:+49569546 | None:intergenic |
| TGATTGATGACGGTCATACT+TGG | 0.450773 | 2_4:-49570318 | Msa0332480:CDS |
| ACAAGATCTCCAGCAATTAA+GGG | 0.474137 | 2_4:+49573490 | None:intergenic |
| AAGGTCAATTTCACCAACTT+GGG | 0.485800 | 2_4:-49570359 | Msa0332480:CDS |
| ATGTATGCAGGAGCTACTAT+AGG | 0.489699 | 2_4:-49569886 | Msa0332480:intron |
| TTTGAAAAGAATAATCATCA+TGG | 0.491104 | 2_4:+49569591 | None:intergenic |
| TCATCATGGATCTCTTCCTT+GGG | 0.495757 | 2_4:+49569605 | None:intergenic |
| CATTTGTTGGAAGCCAAAGC+AGG | 0.496540 | 2_4:+49573644 | None:intergenic |
| ACGAATTGCAACAAGCTTGA+GGG | 0.504079 | 2_4:-49573361 | Msa0332480:CDS |
| ATGGAAGATGAGCTTATAAG+AGG | 0.512066 | 2_4:-49573610 | Msa0332480:CDS |
| ATTGCTTGCATCTATAAAAG+AGG | 0.517270 | 2_4:-49569630 | Msa0332480:CDS |
| AACGAATTGCAACAAGCTTG+AGG | 0.548964 | 2_4:-49573362 | Msa0332480:CDS |
| AGTCAAATATAGAAGTGAAA+GGG | 0.551702 | 2_4:-49573540 | Msa0332480:CDS |
| AAGTCAAATATAGAAGTGAA+AGG | 0.557104 | 2_4:-49573541 | Msa0332480:CDS |
| AAGAGAACCCTCCATTGTAC+AGG | 0.557218 | 2_4:-49569808 | Msa0332480:CDS |
| TCGCAAATACGAAATACTAC+AGG | 0.562971 | 2_4:-49570273 | Msa0332480:intron |
| ATCTATAAAAGAGGATCCCA+AGG | 0.564513 | 2_4:-49569621 | Msa0332480:CDS |
| ATGTAGTCCTGTACAATGGA+GGG | 0.572139 | 2_4:+49569801 | None:intergenic |
| CGAATTGCAACAAGCTTGAG+GGG | 0.577754 | 2_4:-49573360 | Msa0332480:CDS |
| ACTTCAATATTGATTGATGA+CGG | 0.580045 | 2_4:-49570328 | Msa0332480:CDS |
| TGGCAAAGATTCCAATGATG+TGG | 0.594161 | 2_4:-49573419 | Msa0332480:CDS |
| TATGTAGTCCTGTACAATGG+AGG | 0.600837 | 2_4:+49569800 | None:intergenic |
| AACAAATGGCAAGAAAGCAA+TGG | 0.602679 | 2_4:-49573629 | Msa0332480:CDS |
| CCAGCAATTAAGGGTAACAC+TGG | 0.604701 | 2_4:+49573499 | None:intergenic |
| GCAAGCAATGGCAATGGTGA+TGG | 0.605380 | 2_4:+49569644 | None:intergenic |
| TTCAATCGATGATAGCATAG+TGG | 0.608625 | 2_4:+49569499 | None:intergenic |
| ATAGATGCAAGCAATGGCAA+TGG | 0.611452 | 2_4:+49569638 | None:intergenic |
| GCTTATAAGAGGACGTGACA+TGG | 0.614104 | 2_4:-49573599 | Msa0332480:CDS |
| TAATATGTAGTCCTGTACAA+TGG | 0.635454 | 2_4:+49569797 | None:intergenic |
| TGCTGGAGATCTTGTGCGTG+AGG | 0.644187 | 2_4:-49573482 | Msa0332480:CDS |
| GAATTGCAACAAGCTTGAGG+GGG | 0.677451 | 2_4:-49573359 | Msa0332480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAACTTTTTTTTTTTTAAC+TGG | + | chr2_4:49569934-49569953 | None:intergenic | 10.0% |
| !! | CTAAAAATAAAGTTAAATTA+GGG | + | chr2_4:49571834-49571853 | None:intergenic | 10.0% |
| !! | AATATACAAGTATAAAATAA+TGG | + | chr2_4:49572324-49572343 | None:intergenic | 10.0% |
| !!! | AAGAACACTAATTTAATTTT+AGG | + | chr2_4:49570111-49570130 | None:intergenic | 15.0% |
| !! | TTTAAACATTTGTTTATAAG+TGG | + | chr2_4:49570483-49570502 | None:intergenic | 15.0% |
| !! | AAAATATATGATATGTAAGT+TGG | - | chr2_4:49570894-49570913 | Msa0332480:intron | 15.0% |
| !! | CCTAAAAATAAAGTTAAATT+AGG | + | chr2_4:49571835-49571854 | None:intergenic | 15.0% |
| !!! | CCTAATTTAACTTTATTTTT+AGG | - | chr2_4:49571832-49571851 | Msa0332480:intron | 15.0% |
| !!! | GTAGTTTTTATAAAAAAAAG+TGG | - | chr2_4:49571927-49571946 | Msa0332480:intron | 15.0% |
| !! | TTTAAATAAAAACTTGAGTT+TGG | - | chr2_4:49572270-49572289 | Msa0332480:intron | 15.0% |
| !! | AAAACTATAAAAGAATGAAA+AGG | + | chr2_4:49572373-49572392 | None:intergenic | 15.0% |
| !! | ATAGTTTATTTATATTCTTC+TGG | - | chr2_4:49572639-49572658 | Msa0332480:intron | 15.0% |
| !!! | TACATGTTTATAGATATTTT+TGG | - | chr2_4:49572662-49572681 | Msa0332480:intron | 15.0% |
| !! | ATAAGTATAAAATTATCACA+AGG | + | chr2_4:49573019-49573038 | None:intergenic | 15.0% |
| !! | CTTCAAAACTAATAATTAAT+TGG | - | chr2_4:49573196-49573215 | Msa0332480:intron | 15.0% |
| !!! | TTATTCTTTTCAAAATCAAT+TGG | - | chr2_4:49573527-49573546 | Msa0332480:CDS | 15.0% |
| !! | TAAAATCTTAACTAGATGAT+AGG | + | chr2_4:49569999-49570018 | None:intergenic | 20.0% |
| !! | AAAATGAGTTACTTATGAAA+GGG | + | chr2_4:49570205-49570224 | None:intergenic | 20.0% |
| !! | TTCTTATTGGTCAAAAATAA+TGG | + | chr2_4:49571181-49571200 | None:intergenic | 20.0% |
| !! | ATTTGTAGTTTATTTGTGAT+TGG | + | chr2_4:49571275-49571294 | None:intergenic | 20.0% |
| !! | TCACAAATAAACTACAAATA+AGG | - | chr2_4:49571276-49571295 | Msa0332480:intron | 20.0% |
| !!! | TTTGGAAAAAGCATATTTTA+TGG | - | chr2_4:49572195-49572214 | Msa0332480:intron | 20.0% |
| !!! | AGTATACTTTTGTTTTGTTA+GGG | + | chr2_4:49572407-49572426 | None:intergenic | 20.0% |
| !!! | AAGTATACTTTTGTTTTGTT+AGG | + | chr2_4:49572408-49572427 | None:intergenic | 20.0% |
| !!! | ATGTATGTATCCTTTTATTT+TGG | - | chr2_4:49572454-49572473 | Msa0332480:intron | 20.0% |
| !!! | TGTATGTATCCTTTTATTTT+GGG | - | chr2_4:49572455-49572474 | Msa0332480:intron | 20.0% |
| !! | TTGTGTTTAAGAAAATTGAT+TGG | + | chr2_4:49573106-49573125 | None:intergenic | 20.0% |
| !! | ATTTATATCTGAATGCAAAT+AGG | + | chr2_4:49573358-49573377 | None:intergenic | 20.0% |
| !! | TTTGCATTCAGATATAAATT+TGG | - | chr2_4:49573359-49573378 | Msa0332480:CDS | 20.0% |
| !!! | AACGAATTTTCTTCTTTAAT+TGG | + | chr2_4:49573441-49573460 | None:intergenic | 20.0% |
| !! | TTTGAAAAGAATAATCATCA+TGG | + | chr2_4:49573521-49573540 | None:intergenic | 20.0% |
| ! | AAGTCAAATATAGAAGTGAA+AGG | - | chr2_4:49569568-49569587 | Msa0332480:CDS | 25.0% |
| ! | AGTCAAATATAGAAGTGAAA+GGG | - | chr2_4:49569569-49569588 | Msa0332480:CDS | 25.0% |
| ! | AAGAAACTTCGTATAAAACA+TGG | + | chr2_4:49569860-49569879 | None:intergenic | 25.0% |
| !!! | ATCTAGTTAAGATTTTAGAG+AGG | - | chr2_4:49570002-49570021 | Msa0332480:intron | 25.0% |
| ! | ATTGGAAAACTTAGAAATGA+TGG | - | chr2_4:49570059-49570078 | Msa0332480:intron | 25.0% |
| ! | GAAAATGAGTTACTTATGAA+AGG | + | chr2_4:49570206-49570225 | None:intergenic | 25.0% |
| ! | ATGTGATCTAACAGATTATA+TGG | - | chr2_4:49570377-49570396 | Msa0332480:intron | 25.0% |
| ! | TACTATATTGGACTTTAGAT+CGG | - | chr2_4:49570411-49570430 | Msa0332480:intron | 25.0% |
| !!! | AAAGCAAGTTTTATAAGGTA+GGG | + | chr2_4:49570443-49570462 | None:intergenic | 25.0% |
| !!! | TAAAGCAAGTTTTATAAGGT+AGG | + | chr2_4:49570444-49570463 | None:intergenic | 25.0% |
| !!! | CCTTTAAAGCAAGTTTTATA+AGG | + | chr2_4:49570448-49570467 | None:intergenic | 25.0% |
| !! | CCTTATAAAACTTGCTTTAA+AGG | - | chr2_4:49570445-49570464 | Msa0332480:intron | 25.0% |
| ! | TTATACAATAAACGCAAAAC+AGG | + | chr2_4:49570579-49570598 | None:intergenic | 25.0% |
| ! | CGTTTATTGTATAAGTGATT+AGG | - | chr2_4:49570585-49570604 | Msa0332480:intron | 25.0% |
| ! | CTGATGAATAAGTAAAATGT+TGG | - | chr2_4:49570618-49570637 | Msa0332480:intron | 25.0% |
| ! | GCATTATACTTTATGTCTTA+AGG | - | chr2_4:49570660-49570679 | Msa0332480:intron | 25.0% |
| !! | TACTTTATGTCTTAAGGTTT+TGG | - | chr2_4:49570666-49570685 | Msa0332480:intron | 25.0% |
| !! | ACTTTATGTCTTAAGGTTTT+GGG | - | chr2_4:49570667-49570686 | Msa0332480:intron | 25.0% |
| !! | CATATATTTTACCCACTTAT+AGG | + | chr2_4:49570884-49570903 | None:intergenic | 25.0% |
| !! | TCTACAAGTCTTTTATTAGA+GGG | + | chr2_4:49570989-49571008 | None:intergenic | 25.0% |
| !! | TTCTACAAGTCTTTTATTAG+AGG | + | chr2_4:49570990-49571009 | None:intergenic | 25.0% |
| ! | ATAAAAGACTTGTAGAAAAG+AGG | - | chr2_4:49570993-49571012 | Msa0332480:intron | 25.0% |
| ! | TAAAAGACTTGTAGAAAAGA+GGG | - | chr2_4:49570994-49571013 | Msa0332480:intron | 25.0% |
| ! | GAGTTCAGAGATTAAAAATA+AGG | + | chr2_4:49571050-49571069 | None:intergenic | 25.0% |
| !! | TCATTTTACTCTCTTCTTAT+TGG | + | chr2_4:49571194-49571213 | None:intergenic | 25.0% |
| ! | AATAAGAAGAGAGTAAAATG+AGG | - | chr2_4:49571193-49571212 | Msa0332480:intron | 25.0% |
| ! | AACATATAATAGCATATAGG+TGG | + | chr2_4:49571565-49571584 | None:intergenic | 25.0% |
| ! | GCAAACATATAATAGCATAT+AGG | + | chr2_4:49571568-49571587 | None:intergenic | 25.0% |
| ! | ATACGATCATCAATATATAG+TGG | - | chr2_4:49571667-49571686 | Msa0332480:intron | 25.0% |
| ! | TATAGTGGCATTAAGTTATA+AGG | - | chr2_4:49571682-49571701 | Msa0332480:intron | 25.0% |
| ! | ATAGTGGCATTAAGTTATAA+GGG | - | chr2_4:49571683-49571702 | Msa0332480:intron | 25.0% |
| !!! | GGTTTATAACTTTTTTTGAG+GGG | + | chr2_4:49571782-49571801 | None:intergenic | 25.0% |
| !!! | GGGTTTATAACTTTTTTTGA+GGG | + | chr2_4:49571783-49571802 | None:intergenic | 25.0% |
| !!! | AGGGTTTATAACTTTTTTTG+AGG | + | chr2_4:49571784-49571803 | None:intergenic | 25.0% |
| ! | CACTGTCTTAACAATAATTA+GGG | + | chr2_4:49571803-49571822 | None:intergenic | 25.0% |
| ! | TCACTGTCTTAACAATAATT+AGG | + | chr2_4:49571804-49571823 | None:intergenic | 25.0% |
| !!! | CGAACAGGTTTTTTATTTTA+TGG | - | chr2_4:49571856-49571875 | Msa0332480:intron | 25.0% |
| ! | ATATATAGCACATCTCTAAA+TGG | - | chr2_4:49572127-49572146 | Msa0332480:intron | 25.0% |
| ! | TTCATTAGACTTACTCAAAT+TGG | - | chr2_4:49572229-49572248 | Msa0332480:intron | 25.0% |
| !!! | GTATACTTTTGTTTTGTTAG+GGG | + | chr2_4:49572406-49572425 | None:intergenic | 25.0% |
| !!! | GTATGTATCCTTTTATTTTG+GGG | - | chr2_4:49572456-49572475 | Msa0332480:intron | 25.0% |
| ! | GATTATCATTGCATACTTAA+TGG | - | chr2_4:49572590-49572609 | Msa0332480:intron | 25.0% |
| ! | CTTAAGTATGAAGACAAAAA+AGG | + | chr2_4:49572733-49572752 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTCTTCATACTTA+AGG | - | chr2_4:49572731-49572750 | Msa0332480:intron | 25.0% |
| !! | ACTTCAATATTGATTGATGA+CGG | - | chr2_4:49572781-49572800 | Msa0332480:intron | 25.0% |
| ! | CTTATATAGAAAATTACACG+TGG | - | chr2_4:49573034-49573053 | Msa0332480:intron | 25.0% |
| !! | TTAATTGGTAATATGTATGC+AGG | - | chr2_4:49573211-49573230 | Msa0332480:intron | 25.0% |
| GAAACATCTCTAACAGTTAT+AGG | + | chr2_4:49569721-49569740 | None:intergenic | 30.0% | |
| TCAACACCAAAAATCCAAAA+GGG | - | chr2_4:49569806-49569825 | Msa0332480:CDS | 30.0% | |
| AACTTAGAAATGATGGTTGA+AGG | - | chr2_4:49570066-49570085 | Msa0332480:intron | 30.0% | |
| ACTTAGAAATGATGGTTGAA+GGG | - | chr2_4:49570067-49570086 | Msa0332480:intron | 30.0% | |
| TATGTCAAAAACGACTTGTA+TGG | - | chr2_4:49570285-49570304 | Msa0332480:CDS | 30.0% | |
| GATAGACTCTGATACTATAT+TGG | - | chr2_4:49570399-49570418 | Msa0332480:intron | 30.0% | |
| ACTATATTGGACTTTAGATC+GGG | - | chr2_4:49570412-49570431 | Msa0332480:intron | 30.0% | |
| ATCTCACATTTGATGAAGTA+AGG | + | chr2_4:49570506-49570525 | None:intergenic | 30.0% | |
| TACTTATTCATCAGTGATGT+GGG | + | chr2_4:49570612-49570631 | None:intergenic | 30.0% | |
| TTACTTATTCATCAGTGATG+TGG | + | chr2_4:49570613-49570632 | None:intergenic | 30.0% | |
| !!! | CTAACTTAGTTTTACCAAAC+CGG | - | chr2_4:49570917-49570936 | Msa0332480:intron | 30.0% |
| !! | TTTTGGGTAGAATTTGGATT+AGG | - | chr2_4:49570940-49570959 | Msa0332480:intron | 30.0% |
| ! | CTACAAGTCTTTTATTAGAG+GGG | + | chr2_4:49570988-49571007 | None:intergenic | 30.0% |
| AAGATGAAGTTGTCACAAAA+AGG | + | chr2_4:49571114-49571133 | None:intergenic | 30.0% | |
| ! | TTACATAACTGACTCTAGTA+AGG | + | chr2_4:49571330-49571349 | None:intergenic | 30.0% |
| TTACTAGAGTCAGTTATGTA+AGG | - | chr2_4:49571329-49571348 | Msa0332480:intron | 30.0% | |
| !! | GTGGTGAAAGTATTGTAATT+TGG | + | chr2_4:49571370-49571389 | None:intergenic | 30.0% |
| TGAAAGGAAAATCAAAGAGA+TGG | + | chr2_4:49571533-49571552 | None:intergenic | 30.0% | |
| TAGGTAAAAAGAACACGAAA+GGG | + | chr2_4:49571590-49571609 | None:intergenic | 30.0% | |
| TTAGGTAAAAAGAACACGAA+AGG | + | chr2_4:49571591-49571610 | None:intergenic | 30.0% | |
| AATCATCTTGCTGAAGATTT+AGG | + | chr2_4:49571609-49571628 | None:intergenic | 30.0% | |
| !!! | TTATAACTTTTTTTGAGGGG+AGG | + | chr2_4:49571779-49571798 | None:intergenic | 30.0% |
| !!! | ACTTTATTTTTAGGACGAAC+AGG | - | chr2_4:49571841-49571860 | Msa0332480:intron | 30.0% |
| ! | AATGCTAATGAGTGTCTTTT+GGG | - | chr2_4:49571881-49571900 | Msa0332480:intron | 30.0% |
| CAAGACAAAGTTTCTACTAA+TGG | - | chr2_4:49571989-49572008 | Msa0332480:intron | 30.0% | |
| ! | TGTTATGTAGTTGATGTAGT+GGG | + | chr2_4:49572068-49572087 | None:intergenic | 30.0% |
| ! | ATGTTATGTAGTTGATGTAG+TGG | + | chr2_4:49572069-49572088 | None:intergenic | 30.0% |
| !!! | TCTTTCGGTGTCAATTTTAA+TGG | + | chr2_4:49572160-49572179 | None:intergenic | 30.0% |
| !!! | TATGCTTTTTCCAAAGTCAT+TGG | + | chr2_4:49572190-49572209 | None:intergenic | 30.0% |
| TTGAGTAAGTCTAATGAAGT+TGG | + | chr2_4:49572227-49572246 | None:intergenic | 30.0% | |
| TTGAGTTTGGATAATTCATG+TGG | - | chr2_4:49572283-49572302 | Msa0332480:intron | 30.0% | |
| TGAGTTTGGATAATTCATGT+GGG | - | chr2_4:49572284-49572303 | Msa0332480:intron | 30.0% | |
| CTATAAAAGAATGAAAAGGC+TGG | + | chr2_4:49572369-49572388 | None:intergenic | 30.0% | |
| ACATATATTCCCTAACGAAA+GGG | + | chr2_4:49572438-49572457 | None:intergenic | 30.0% | |
| TACATATATTCCCTAACGAA+AGG | + | chr2_4:49572439-49572458 | None:intergenic | 30.0% | |
| CAATGATAATCATGTATGTC+TGG | + | chr2_4:49572581-49572600 | None:intergenic | 30.0% | |
| TAATATGTAGTCCTGTACAA+TGG | + | chr2_4:49573315-49573334 | None:intergenic | 30.0% | |
| TTGTACAGGACTACATATTA+TGG | - | chr2_4:49573315-49573334 | Msa0332480:CDS | 30.0% | |
| ! | TCTTTTATAGATGCAAGCAA+TGG | + | chr2_4:49573480-49573499 | None:intergenic | 30.0% |
| ATTGCTTGCATCTATAAAAG+AGG | - | chr2_4:49573479-49573498 | Msa0332480:CDS | 30.0% | |
| CTTCAAAGTTACATGATATG+AGG | + | chr2_4:49573566-49573585 | None:intergenic | 30.0% | |
| ! | ATTGCTTTCTTGCCATTTGT+TGG | + | chr2_4:49569481-49569500 | None:intergenic | 35.0% |
| AACAAATGGCAAGAAAGCAA+TGG | - | chr2_4:49569480-49569499 | Msa0332480:CDS | 35.0% | |
| ATGGAAGATGAGCTTATAAG+AGG | - | chr2_4:49569499-49569518 | Msa0332480:CDS | 35.0% | |
| ACAAGATCTCCAGCAATTAA+GGG | + | chr2_4:49569622-49569641 | None:intergenic | 35.0% | |
| ! | ACACTTTTGCTCTTGAACAA+TGG | - | chr2_4:49569670-49569689 | Msa0332480:CDS | 35.0% |
| TATAGGAACATCCACATCAT+TGG | + | chr2_4:49569704-49569723 | None:intergenic | 35.0% | |
| CTCAACACCAAAAATCCAAA+AGG | - | chr2_4:49569805-49569824 | Msa0332480:CDS | 35.0% | |
| TTAATTAACATACCCCCTCA+CGG | - | chr2_4:49570528-49570547 | Msa0332480:intron | 35.0% | |
| !!! | TTATGTCTTAAGGTTTTGGG+TGG | - | chr2_4:49570670-49570689 | Msa0332480:intron | 35.0% |
| GAAGTGAAAACTCACACTTA+GGG | - | chr2_4:49570814-49570833 | Msa0332480:intron | 35.0% | |
| AAGTGAAAACTCACACTTAG+GGG | - | chr2_4:49570815-49570834 | Msa0332480:intron | 35.0% | |
| !! | TAGTTTTACCAAACCGGTTT+TGG | - | chr2_4:49570923-49570942 | Msa0332480:intron | 35.0% |
| !! | AGTTTTACCAAACCGGTTTT+GGG | - | chr2_4:49570924-49570943 | Msa0332480:intron | 35.0% |
| ATCCAAATTCTACCCAAAAC+CGG | + | chr2_4:49570939-49570958 | None:intergenic | 35.0% | |
| AAAAATGAGTGAAGGGTTGT+GGG | + | chr2_4:49571417-49571436 | None:intergenic | 35.0% | |
| CTGTGACAAAAATGAGTGAA+GGG | + | chr2_4:49571424-49571443 | None:intergenic | 35.0% | |
| TCTGTGACAAAAATGAGTGA+AGG | + | chr2_4:49571425-49571444 | None:intergenic | 35.0% | |
| ! | TCTTCAAGGTTTTCTCATTC+GGG | + | chr2_4:49571494-49571513 | None:intergenic | 35.0% |
| ! | CTCTTCAAGGTTTTCTCATT+CGG | + | chr2_4:49571495-49571514 | None:intergenic | 35.0% |
| !! | TAGGTGGAAAAGTGTTTGAA+AGG | + | chr2_4:49571549-49571568 | None:intergenic | 35.0% |
| TTAGCTAGAGCTATGATGAA+GGG | + | chr2_4:49571741-49571760 | None:intergenic | 35.0% | |
| ! | GAATGCTAATGAGTGTCTTT+TGG | - | chr2_4:49571880-49571899 | Msa0332480:intron | 35.0% |
| CTTAACAATCAGTACCCTAA+GGG | + | chr2_4:49572026-49572045 | None:intergenic | 35.0% | |
| !! | GTCATTGGTTCGATTTCTTT+CGG | + | chr2_4:49572175-49572194 | None:intergenic | 35.0% |
| AGAAATCGAACCAATGACTT+TGG | - | chr2_4:49572177-49572196 | Msa0332480:intron | 35.0% | |
| TTGGATAATTCATGTGGGAT+TGG | - | chr2_4:49572289-49572308 | Msa0332480:intron | 35.0% | |
| TGGATAATTCATGTGGGATT+GGG | - | chr2_4:49572290-49572309 | Msa0332480:intron | 35.0% | |
| !!! | ACTTTTGTTTTGTTAGGGGA+GGG | + | chr2_4:49572402-49572421 | None:intergenic | 35.0% |
| !!! | TACTTTTGTTTTGTTAGGGG+AGG | + | chr2_4:49572403-49572422 | None:intergenic | 35.0% |
| AAAGGATCAAATTCTACTCG+AGG | + | chr2_4:49572534-49572553 | None:intergenic | 35.0% | |
| TAAGGTCAATTTCACCAACT+TGG | - | chr2_4:49572749-49572768 | Msa0332480:intron | 35.0% | |
| AAGGTCAATTTCACCAACTT+GGG | - | chr2_4:49572750-49572769 | Msa0332480:intron | 35.0% | |
| TCGCAAATACGAAATACTAC+AGG | - | chr2_4:49572836-49572855 | Msa0332480:intron | 35.0% | |
| GTCCACTTAAAAAGACTTAG+CGG | + | chr2_4:49573084-49573103 | None:intergenic | 35.0% | |
| ! | AATAGGTTTTGCAAGTGTGA+TGG | + | chr2_4:49573341-49573360 | None:intergenic | 35.0% |
| AGAGTCATCTGATGACAAAA+TGG | + | chr2_4:49573388-49573407 | None:intergenic | 35.0% | |
| ATCTATAAAAGAGGATCCCA+AGG | - | chr2_4:49573488-49573507 | Msa0332480:CDS | 35.0% | |
| TTCAATCGATGATAGCATAG+TGG | + | chr2_4:49573613-49573632 | None:intergenic | 35.0% | |
| GAGAATGTTTATGACCAGTT+AGG | - | chr2_4:49573645-49573664 | Msa0332480:CDS | 35.0% | |
| CACAAGATCTCCAGCAATTA+AGG | + | chr2_4:49569623-49569642 | None:intergenic | 40.0% | |
| TGGCAAAGATTCCAATGATG+TGG | - | chr2_4:49569690-49569709 | Msa0332480:CDS | 40.0% | |
| AACGAATTGCAACAAGCTTG+AGG | - | chr2_4:49569747-49569766 | Msa0332480:CDS | 40.0% | |
| ACGAATTGCAACAAGCTTGA+GGG | - | chr2_4:49569748-49569767 | Msa0332480:CDS | 40.0% | |
| ! | GTTCGACCCTTTTGGATTTT+TGG | + | chr2_4:49569815-49569834 | None:intergenic | 40.0% |
| ! | TTTCTCTTGTTCGACCCTTT+TGG | + | chr2_4:49569823-49569842 | None:intergenic | 40.0% |
| CGCTTCAGGTGTTTATAAGT+AGG | + | chr2_4:49570322-49570341 | None:intergenic | 40.0% | |
| GGAAGTGAAAACTCACACTT+AGG | - | chr2_4:49570813-49570832 | Msa0332480:intron | 40.0% | |
| AGTGAAAACTCACACTTAGG+GGG | - | chr2_4:49570816-49570835 | Msa0332480:intron | 40.0% | |
| AATTCTACCCAAAACCGGTT+TGG | + | chr2_4:49570934-49570953 | None:intergenic | 40.0% | |
| !!! | AACCGGTTTTGGGTAGAATT+TGG | - | chr2_4:49570934-49570953 | Msa0332480:intron | 40.0% |
| !! | GTGATAAGAGCGTTAACTAG+TGG | + | chr2_4:49571389-49571408 | None:intergenic | 40.0% |
| CAAAAATGAGTGAAGGGTTG+TGG | + | chr2_4:49571418-49571437 | None:intergenic | 40.0% | |
| GTTAGCTAGAGCTATGATGA+AGG | + | chr2_4:49571742-49571761 | None:intergenic | 40.0% | |
| ATGGATTCTTCAATGCCCTT+AGG | - | chr2_4:49572008-49572027 | Msa0332480:intron | 40.0% | |
| TGGATTCTTCAATGCCCTTA+GGG | - | chr2_4:49572009-49572028 | Msa0332480:intron | 40.0% | |
| GCTTAACAATCAGTACCCTA+AGG | + | chr2_4:49572027-49572046 | None:intergenic | 40.0% | |
| !!! | TTTTGTTTTGTTAGGGGAGG+GGG | + | chr2_4:49572400-49572419 | None:intergenic | 40.0% |
| !!! | CTTTTGTTTTGTTAGGGGAG+GGG | + | chr2_4:49572401-49572420 | None:intergenic | 40.0% |
| CAGCACATCCCCAAAATAAA+AGG | + | chr2_4:49572467-49572486 | None:intergenic | 40.0% | |
| GGGATGTGCTGTATACTTAA+AGG | - | chr2_4:49572476-49572495 | Msa0332480:intron | 40.0% | |
| AGCAGTGTCTGCAGATTAAA+AGG | + | chr2_4:49572552-49572571 | None:intergenic | 40.0% | |
| !! | TGATTGATGACGGTCATACT+TGG | - | chr2_4:49572791-49572810 | Msa0332480:intron | 40.0% |
| GGTCATACTTGGAGAAAGTA+TGG | - | chr2_4:49572802-49572821 | Msa0332480:intron | 40.0% | |
| ATGTATGCAGGAGCTACTAT+AGG | - | chr2_4:49573223-49573242 | Msa0332480:intron | 40.0% | |
| ATGTAGTCCTGTACAATGGA+GGG | + | chr2_4:49573311-49573330 | None:intergenic | 40.0% | |
| TATGTAGTCCTGTACAATGG+AGG | + | chr2_4:49573312-49573331 | None:intergenic | 40.0% | |
| ATAGATGCAAGCAATGGCAA+TGG | + | chr2_4:49573474-49573493 | None:intergenic | 40.0% | |
| TCATCATGGATCTCTTCCTT+GGG | + | chr2_4:49573507-49573526 | None:intergenic | 40.0% | |
| ATCATCATGGATCTCTTCCT+TGG | + | chr2_4:49573508-49573527 | None:intergenic | 40.0% | |
| ! | CATTTGTTGGAAGCCAAAGC+AGG | + | chr2_4:49569468-49569487 | None:intergenic | 45.0% |
| ! | CTGCTTTGGCTTCCAACAAA+TGG | - | chr2_4:49569466-49569485 | Msa0332480:CDS | 45.0% |
| GCTTATAAGAGGACGTGACA+TGG | - | chr2_4:49569510-49569529 | Msa0332480:CDS | 45.0% | |
| CCAGCAATTAAGGGTAACAC+TGG | + | chr2_4:49569613-49569632 | None:intergenic | 45.0% | |
| CCAGTGTTACCCTTAATTGC+TGG | - | chr2_4:49569610-49569629 | Msa0332480:CDS | 45.0% | |
| CGAATTGCAACAAGCTTGAG+GGG | - | chr2_4:49569749-49569768 | Msa0332480:CDS | 45.0% | |
| GAATTGCAACAAGCTTGAGG+GGG | - | chr2_4:49569750-49569769 | Msa0332480:CDS | 45.0% | |
| ! | AAGCTTGAGGGGGATTTTGA+TGG | - | chr2_4:49569760-49569779 | Msa0332480:CDS | 45.0% |
| TTTCCGCTATCGAACGACTT+GGG | + | chr2_4:49570348-49570367 | None:intergenic | 45.0% | |
| ATTTCCGCTATCGAACGACT+TGG | + | chr2_4:49570349-49570368 | None:intergenic | 45.0% | |
| TGTGATGTCTTCGTCTCTTG+TGG | - | chr2_4:49570696-49570715 | Msa0332480:intron | 45.0% | |
| CTCTTGTGGTACTTGAGCAT+TGG | - | chr2_4:49570710-49570729 | Msa0332480:intron | 45.0% | |
| AATACCCTTGTTGGGGAGTT+TGG | + | chr2_4:49570739-49570758 | None:intergenic | 45.0% | |
| ! | AAACTCCCCAACAAGGGTAT+TGG | - | chr2_4:49570738-49570757 | Msa0332480:intron | 45.0% |
| !! | AACTCCCCAACAAGGGTATT+GGG | - | chr2_4:49570739-49570758 | Msa0332480:intron | 45.0% |
| ATAGCCCCAATACCCTTGTT+GGG | + | chr2_4:49570747-49570766 | None:intergenic | 45.0% | |
| ATTGGGGCTATGCTACGATT+TGG | - | chr2_4:49570756-49570775 | Msa0332480:intron | 45.0% | |
| ! | GTGGATCCTGGTATTGGATT+AGG | - | chr2_4:49570786-49570805 | Msa0332480:intron | 45.0% |
| CCTACACCTAATCCAATACC+AGG | + | chr2_4:49570795-49570814 | None:intergenic | 45.0% | |
| ! | CCTGGTATTGGATTAGGTGT+AGG | - | chr2_4:49570792-49570811 | Msa0332480:intron | 45.0% |
| ACACTTAGGGGGACATTGTT+GGG | - | chr2_4:49570827-49570846 | Msa0332480:intron | 45.0% | |
| TGTTGGGCTTCAAGTGTGAT+CGG | - | chr2_4:49570843-49570862 | Msa0332480:intron | 45.0% | |
| AGTTCCACATCGCCTATAAG+TGG | - | chr2_4:49570869-49570888 | Msa0332480:intron | 45.0% | |
| GTTCCACATCGCCTATAAGT+GGG | - | chr2_4:49570870-49570889 | Msa0332480:intron | 45.0% | |
| TTACCCACTTATAGGCGATG+TGG | + | chr2_4:49570876-49570895 | None:intergenic | 45.0% | |
| AGGTCTAACTCAACAGTGAG+CGG | - | chr2_4:49570960-49570979 | Msa0332480:intron | 45.0% | |
| CTTCAGTAGACTTGAGTGTG+AGG | - | chr2_4:49571077-49571096 | Msa0332480:intron | 45.0% | |
| CACTAGTCGTACACTCTTCA+AGG | + | chr2_4:49571508-49571527 | None:intergenic | 45.0% | |
| TTGTCAGCACCCTTTCGTTA+GGG | - | chr2_4:49572426-49572445 | Msa0332480:intron | 45.0% | |
| !! | GAAGTGCTCTTTTCCCAAGT+TGG | + | chr2_4:49572766-49572785 | None:intergenic | 45.0% |
| !! | CGCCGCTAAGTCTTTTTAAG+TGG | - | chr2_4:49573079-49573098 | Msa0332480:intron | 45.0% |
| AAGAGAACCCTCCATTGTAC+AGG | - | chr2_4:49573301-49573320 | Msa0332480:CDS | 45.0% | |
| !!! | TATTTTATTTAATTGTTTAT+TGG | - | chr2_4:49570041-49570060 | Msa0332480:intron | 5.0% |
| !!! | TTATATATTTCTAATAAAAA+GGG | + | chr2_4:49570245-49570264 | None:intergenic | 5.0% |
| !!! | ATTATATATTTCTAATAAAA+AGG | + | chr2_4:49570246-49570265 | None:intergenic | 5.0% |
| !!! | AAGTTTTTATTTAAAAAAAA+AGG | + | chr2_4:49572265-49572284 | None:intergenic | 5.0% |
| !! | TATATTAAAATTACAAAAAT+TGG | + | chr2_4:49572925-49572944 | None:intergenic | 5.0% |
| !!! | ATAATTATTTAAATTTTGAA+AGG | + | chr2_4:49573168-49573187 | None:intergenic | 5.0% |
| CAACCCAAGTCGTTCGATAG+CGG | - | chr2_4:49570342-49570361 | Msa0332480:CDS | 50.0% | |
| ATGTCTGGACTTGACCGTGA+GGG | + | chr2_4:49570545-49570564 | None:intergenic | 50.0% | |
| GTCTCCAAACTCCCCAACAA+GGG | - | chr2_4:49570732-49570751 | Msa0332480:intron | 50.0% | |
| !! | ACTCCCCAACAAGGGTATTG+GGG | - | chr2_4:49570740-49570759 | Msa0332480:intron | 50.0% |
| TAGCCCCAATACCCTTGTTG+GGG | + | chr2_4:49570746-49570765 | None:intergenic | 50.0% | |
| CATAGCCCCAATACCCTTGT+TGG | + | chr2_4:49570748-49570767 | None:intergenic | 50.0% | |
| !! | GCTATGCTACGATTTGGTGG+AGG | - | chr2_4:49570762-49570781 | Msa0332480:intron | 50.0% |
| CACACTTAGGGGGACATTGT+TGG | - | chr2_4:49570826-49570845 | Msa0332480:intron | 50.0% | |
| CTTGTCAGCACCCTTTCGTT+AGG | - | chr2_4:49572425-49572444 | Msa0332480:intron | 50.0% | |
| GCAAGCAATGGCAATGGTGA+TGG | + | chr2_4:49573468-49573487 | None:intergenic | 50.0% | |
| TGCTGGAGATCTTGTGCGTG+AGG | - | chr2_4:49569627-49569646 | Msa0332480:CDS | 55.0% | |
| ! | AACGACTTGGGTTGCGCTTC+AGG | + | chr2_4:49570336-49570355 | None:intergenic | 55.0% |
| TGTCTGGACTTGACCGTGAG+GGG | + | chr2_4:49570544-49570563 | None:intergenic | 55.0% | |
| GATGTCTGGACTTGACCGTG+AGG | + | chr2_4:49570546-49570565 | None:intergenic | 55.0% | |
| CACGGTCAAGTCCAGACATC+TGG | - | chr2_4:49570546-49570565 | Msa0332480:intron | 55.0% | |
| ! | AAGTCCAGACATCTGGAGCG+TGG | - | chr2_4:49570553-49570572 | Msa0332480:intron | 55.0% |
| GGTCTCCAAACTCCCCAACA+AGG | - | chr2_4:49570731-49570750 | Msa0332480:intron | 55.0% | |
| ! | GGGGCTATGCTACGATTTGG+TGG | - | chr2_4:49570759-49570778 | Msa0332480:intron | 55.0% |
| !! | GCTACGATTTGGTGGAGGAG+TGG | - | chr2_4:49570767-49570786 | Msa0332480:intron | 55.0% |
| TTTGGTGGAGGAGTGGATCC+TGG | - | chr2_4:49570774-49570793 | Msa0332480:intron | 55.0% | |
| GGAGGAGTGGATCCTGGTAT+TGG | - | chr2_4:49570780-49570799 | Msa0332480:intron | 55.0% | |
| ! | GAGTGAAGGGTTGTGGGCTA+CGG | + | chr2_4:49571411-49571430 | None:intergenic | 55.0% |
| GTCTGGACTTGACCGTGAGG+GGG | + | chr2_4:49570543-49570562 | None:intergenic | 60.0% | |
| CAGGCCACGCTCCAGATGTC+TGG | + | chr2_4:49570560-49570579 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 49569457 | 49573674 | 49569457 | ID=Msa0332480;Name=Msa0332480 |
| chr2_4 | mRNA | 49569457 | 49573674 | 49569457 | ID=Msa0332480-mRNA-1;Parent=Msa0332480;Name=Msa0332480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.33|1|1|1|3|0|310 |
| chr2_4 | exon | 49573289 | 49573674 | 49573289 | ID=Msa0332480-mRNA-1:exon:14809;Parent=Msa0332480-mRNA-1 |
| chr2_4 | exon | 49570274 | 49570378 | 49570274 | ID=Msa0332480-mRNA-1:exon:14808;Parent=Msa0332480-mRNA-1 |
| chr2_4 | exon | 49569457 | 49569898 | 49569457 | ID=Msa0332480-mRNA-1:exon:14807;Parent=Msa0332480-mRNA-1 |
| chr2_4 | CDS | 49573289 | 49573674 | 49573289 | ID=Msa0332480-mRNA-1:cds;Parent=Msa0332480-mRNA-1 |
| chr2_4 | CDS | 49570274 | 49570378 | 49570274 | ID=Msa0332480-mRNA-1:cds;Parent=Msa0332480-mRNA-1 |
| chr2_4 | CDS | 49569457 | 49569898 | 49569457 | ID=Msa0332480-mRNA-1:cds;Parent=Msa0332480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
