Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332520 | RHN68248.1 | 78.182 | 55 | 12 | 0 | 1 | 55 | 1 | 55 | 3.23e-18 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332520 | sp|Q9FKK2|AGL62_ARATH | 74.419 | 43 | 11 | 0 | 13 | 55 | 16 | 58 | 1.71e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0332520 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332520 | MtrunA17_Chr3g0111831 | 78.182 | 55 | 12 | 0 | 1 | 55 | 1 | 55 | 2.97e-22 | 84.7 |
| Msa0332520 | MtrunA17_Chr5g0419601 | 84.444 | 45 | 7 | 0 | 11 | 55 | 16 | 60 | 7.24e-21 | 85.1 |
| Msa0332520 | MtrunA17_Chr3g0111841 | 82.222 | 45 | 8 | 0 | 11 | 55 | 3 | 47 | 1.21e-20 | 80.1 |
| Msa0332520 | MtrunA17_Chr1g0206701 | 58.571 | 70 | 26 | 1 | 11 | 80 | 16 | 82 | 2.94e-20 | 83.6 |
| Msa0332520 | MtrunA17_Chr8g0355091 | 58.571 | 70 | 26 | 1 | 11 | 80 | 16 | 82 | 3.44e-20 | 83.2 |
| Msa0332520 | MtrunA17_Chr1g0149391 | 61.765 | 68 | 23 | 1 | 11 | 78 | 16 | 80 | 3.78e-20 | 83.2 |
| Msa0332520 | MtrunA17_Chr3g0099411 | 58.571 | 70 | 26 | 1 | 11 | 80 | 16 | 82 | 4.26e-20 | 82.8 |
| Msa0332520 | MtrunA17_Chr1g0206721 | 58.571 | 70 | 26 | 1 | 11 | 80 | 16 | 82 | 6.67e-20 | 82.4 |
| Msa0332520 | MtrunA17_Chr1g0206691 | 58.824 | 68 | 25 | 1 | 13 | 80 | 1 | 65 | 1.14e-19 | 81.6 |
| Msa0332520 | MtrunA17_Chr1g0187351 | 54.167 | 72 | 30 | 1 | 13 | 84 | 1 | 69 | 1.28e-19 | 77.4 |
| Msa0332520 | MtrunA17_Chr2g0317451 | 80.000 | 45 | 9 | 0 | 11 | 55 | 16 | 60 | 1.65e-19 | 81.6 |
| Msa0332520 | MtrunA17_Chr2g0317481 | 80.000 | 45 | 9 | 0 | 11 | 55 | 16 | 60 | 1.73e-19 | 81.3 |
| Msa0332520 | MtrunA17_Chr1g0187361 | 55.263 | 76 | 29 | 2 | 11 | 86 | 16 | 86 | 4.70e-19 | 80.1 |
| Msa0332520 | MtrunA17_Chr3g0099421 | 58.571 | 70 | 26 | 1 | 11 | 80 | 41 | 107 | 5.10e-19 | 80.5 |
| Msa0332520 | MtrunA17_Chr1g0188671 | 55.714 | 70 | 28 | 1 | 11 | 80 | 54 | 120 | 5.63e-19 | 80.9 |
| Msa0332520 | MtrunA17_Chr5g0422421 | 57.143 | 70 | 27 | 1 | 11 | 80 | 16 | 82 | 7.77e-19 | 79.7 |
| Msa0332520 | MtrunA17_Chr5g0422941 | 77.778 | 45 | 10 | 0 | 11 | 55 | 16 | 60 | 1.55e-18 | 79.0 |
| Msa0332520 | MtrunA17_Chr1g0206991 | 55.882 | 68 | 27 | 1 | 11 | 78 | 16 | 80 | 3.42e-18 | 77.0 |
| Msa0332520 | MtrunA17_Chr2g0292791 | 55.714 | 70 | 28 | 1 | 11 | 80 | 16 | 82 | 4.55e-18 | 77.8 |
| Msa0332520 | MtrunA17_Chr1g0208561 | 52.857 | 70 | 30 | 1 | 11 | 80 | 16 | 82 | 3.13e-16 | 72.8 |
| Msa0332520 | MtrunA17_Chr3g0089141 | 52.857 | 70 | 30 | 1 | 11 | 80 | 16 | 82 | 3.43e-16 | 72.4 |
| Msa0332520 | MtrunA17_Chr3g0111931 | 80.000 | 40 | 8 | 0 | 16 | 55 | 2 | 41 | 4.09e-15 | 67.0 |
| Msa0332520 | MtrunA17_Chr2g0300441 | 50.000 | 70 | 32 | 1 | 11 | 80 | 16 | 82 | 6.85e-15 | 69.3 |
| Msa0332520 | MtrunA17_Chr1g0208581 | 66.667 | 45 | 15 | 0 | 11 | 55 | 16 | 60 | 1.45e-14 | 68.2 |
| Msa0332520 | MtrunA17_Chr3g0089151 | 47.143 | 70 | 34 | 1 | 11 | 80 | 16 | 82 | 2.07e-14 | 65.9 |
| Msa0332520 | MtrunA17_Chr3g0085241 | 50.769 | 65 | 29 | 1 | 16 | 80 | 53 | 114 | 2.65e-14 | 67.8 |
| Msa0332520 | MtrunA17_Chr3g0119901 | 50.769 | 65 | 29 | 1 | 16 | 80 | 21 | 82 | 3.42e-14 | 66.6 |
| Msa0332520 | MtrunA17_Chr2g0325971 | 50.000 | 70 | 32 | 1 | 11 | 80 | 16 | 82 | 4.61e-14 | 66.6 |
| Msa0332520 | MtrunA17_Chr2g0300421 | 48.571 | 70 | 33 | 1 | 11 | 80 | 16 | 82 | 1.41e-13 | 64.7 |
| Msa0332520 | MtrunA17_Chr4g0018951 | 50.000 | 62 | 28 | 1 | 17 | 78 | 25 | 83 | 1.64e-13 | 64.3 |
| Msa0332520 | MtrunA17_Chr8g0379021 | 47.059 | 68 | 33 | 1 | 11 | 78 | 19 | 83 | 3.16e-13 | 63.5 |
| Msa0332520 | MtrunA17_Chr2g0333981 | 44.118 | 68 | 35 | 1 | 11 | 78 | 19 | 83 | 2.06e-12 | 61.6 |
| Msa0332520 | MtrunA17_Chr4g0071601 | 49.153 | 59 | 27 | 1 | 20 | 78 | 28 | 83 | 3.31e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332520 | AT5G60440.1 | 74.419 | 43 | 11 | 0 | 13 | 55 | 16 | 58 | 1.74e-16 | 74.7 |
| Msa0332520 | AT4G36590.1 | 68.889 | 45 | 14 | 0 | 11 | 55 | 14 | 58 | 7.67e-15 | 69.7 |
| Msa0332520 | AT1G01530.1 | 65.909 | 44 | 15 | 0 | 13 | 56 | 16 | 59 | 3.22e-14 | 67.8 |
| Msa0332520 | AT2G24840.1 | 62.791 | 43 | 16 | 0 | 13 | 55 | 72 | 114 | 2.26e-12 | 63.2 |
| Msa0332520 | AT1G65360.1 | 60.465 | 43 | 17 | 0 | 13 | 55 | 16 | 58 | 2.80e-12 | 62.4 |
Find 43 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGAGTCGGGGAGGGTT+GGG | 0.346214 | 2_4:-49646558 | None:intergenic |
| GGCGACGGCGGTTTGGAGTC+GGG | 0.377740 | 2_4:-49646568 | None:intergenic |
| GCTTCGAGAAAGTCACTTGC+AGG | 0.384026 | 2_4:-49644018 | None:intergenic |
| AATCTGTGGCGACGGCGGTT+TGG | 0.387005 | 2_4:-49646575 | None:intergenic |
| GCTTCGAGAAAGTCACTTGC+AGG | 0.392864 | 2_4:+49644604 | Msa0332520:CDS |
| GGTTTGGAGTCGGGGAGGGT+TGG | 0.395731 | 2_4:-49646559 | None:intergenic |
| CGGCGGGTCCGATCGTGAAT+TGG | 0.403243 | 2_4:-49646622 | None:intergenic |
| TGGCGACGGCGGTTTGGAGT+CGG | 0.404533 | 2_4:-49646569 | None:intergenic |
| TCGATTTATGGGATCTGGAT+TGG | 0.428022 | 2_4:-49646724 | None:intergenic |
| GTGCATGAAAGTGGCGATAA+CGG | 0.436192 | 2_4:-49646669 | None:intergenic |
| TGCATGAAAGTGGCGATAAC+GGG | 0.444816 | 2_4:-49646668 | None:intergenic |
| CGTGAATTGGTGGTGACGGC+GGG | 0.460221 | 2_4:-49646609 | None:intergenic |
| TTTATGGAGTTTCCTACATC+GGG | 0.461088 | 2_4:-49646695 | None:intergenic |
| ACGGCGGTTTGGAGTCGGGG+AGG | 0.472305 | 2_4:-49646564 | None:intergenic |
| CGGCGGTTTGGAGTCGGGGA+GGG | 0.501388 | 2_4:-49646563 | None:intergenic |
| GCGACGGCGGTTTGGAGTCG+GGG | 0.509753 | 2_4:-49646567 | None:intergenic |
| CTTTCTCGAAGCGCCGCAGT+GGG | 0.517223 | 2_4:+49644029 | Msa0332520:CDS |
| AGCAAGCTTTGCACCCTCTG+TGG | 0.545328 | 2_4:+49644067 | Msa0332520:CDS |
| TTCATGCACCTGCCCGATGT+AGG | 0.545754 | 2_4:+49646683 | Msa0332520:CDS |
| CGATCGTGAATTGGTGGTGA+CGG | 0.552313 | 2_4:-49646613 | None:intergenic |
| TGGAGTTTCCTACATCGGGC+AGG | 0.562189 | 2_4:-49646691 | None:intergenic |
| ACTTTCTCGAAGCGCCGCAG+TGG | 0.564118 | 2_4:+49644028 | Msa0332520:CDS |
| TATATTCTCACCTGGTGAGA+AGG | 0.565372 | 2_4:+49644108 | Msa0332520:CDS |
| ATCGGGCAGGTGCATGAAAG+TGG | 0.567111 | 2_4:-49646678 | None:intergenic |
| ACTTTCTCGAAGCGTCGTAG+TGG | 0.570157 | 2_4:-49644594 | None:intergenic |
| CGTGAATCGATGGTGACGGC+GGG | 0.572719 | 2_4:-49646638 | None:intergenic |
| TCGTGAATTGGTGGTGACGG+CGG | 0.573692 | 2_4:-49646610 | None:intergenic |
| CGGGTCCGATCGTGAATTGG+TGG | 0.585010 | 2_4:-49646619 | None:intergenic |
| CCGACGAGAATCTGTGGCGA+CGG | 0.599068 | 2_4:-49646583 | None:intergenic |
| CGATCGTGAATCGATGGTGA+CGG | 0.599286 | 2_4:-49646642 | None:intergenic |
| TCGTGAATCGATGGTGACGG+CGG | 0.600651 | 2_4:-49646639 | None:intergenic |
| GGGTTCCGATCGTGAATCGA+TGG | 0.609187 | 2_4:-49646648 | None:intergenic |
| ACGAGAATCTGTGGCGACGG+CGG | 0.611204 | 2_4:-49646580 | None:intergenic |
| GGGTTTCCGACGAGAATCTG+TGG | 0.614564 | 2_4:-49646589 | None:intergenic |
| AATGAAAATACCTTCTCACC+AGG | 0.623617 | 2_4:-49644118 | None:intergenic |
| ACTCTAATTATATTCTCACC+TGG | 0.624315 | 2_4:+49644100 | Msa0332520:CDS |
| TATGGGATCGTGAAGAACAA+AGG | 0.628826 | 2_4:-49646755 | None:intergenic |
| CGTCACCACCAATTCACGAT+CGG | 0.629788 | 2_4:+49646614 | Msa0332520:CDS |
| CGTCACCATCGATTCACGAT+CGG | 0.641156 | 2_4:+49646643 | Msa0332520:CDS |
| AGTAACATATGCACCACAGA+GGG | 0.653696 | 2_4:-49644080 | None:intergenic |
| CCGTCGCCACAGATTCTCGT+CGG | 0.658539 | 2_4:+49646583 | Msa0332520:CDS |
| GAGTAACATATGCACCACAG+AGG | 0.748606 | 2_4:-49644081 | None:intergenic |
| CTTTCGTGAAGAGCCCACTG+CGG | 0.762759 | 2_4:-49644042 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | - | chr2_4:49644968-49644987 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr2_4:49644969-49644988 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr2_4:49644968-49644987 | Msa0332520:intron | 0.0% |
| !! | CTATACAAAAAAAAAAATTA+AGG | + | chr2_4:49645410-49645429 | Msa0332520:intron | 10.0% |
| !!! | AAACTAATTTTTTAATAACA+AGG | - | chr2_4:49645515-49645534 | None:intergenic | 10.0% |
| !! | TATATAAAAATTAATGAGTG+TGG | + | chr2_4:49645087-49645106 | Msa0332520:intron | 15.0% |
| !! | GAACTATATATTTGTAATTT+AGG | + | chr2_4:49645271-49645290 | Msa0332520:intron | 15.0% |
| !!! | ATTTTATAAAATTGACTACT+AGG | - | chr2_4:49645541-49645560 | None:intergenic | 15.0% |
| !!! | CATAATTTTAATTTATTGCA+TGG | - | chr2_4:49645580-49645599 | None:intergenic | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | + | chr2_4:49646134-49646153 | Msa0332520:intron | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | + | chr2_4:49646135-49646154 | Msa0332520:intron | 15.0% |
| !! | TTCTTGAATAATTCAAAAGT+TGG | + | chr2_4:49644319-49644338 | Msa0332520:intron | 20.0% |
| !! | AAGAAATTACACATTGTAAT+TGG | + | chr2_4:49644780-49644799 | Msa0332520:intron | 20.0% |
| !! | AGAAATTACACATTGTAATT+GGG | + | chr2_4:49644781-49644800 | Msa0332520:intron | 20.0% |
| !! | AATATTTCAATGTAACGAAA+AGG | - | chr2_4:49644860-49644879 | None:intergenic | 20.0% |
| !!! | TTGATACATTAAACACTTTT+TGG | + | chr2_4:49645341-49645360 | Msa0332520:intron | 20.0% |
| !!! | ACGGGTTAAAAATTATTTAT+TGG | - | chr2_4:49645696-49645715 | None:intergenic | 20.0% |
| !! | TAAACAGATATGAATGAAAT+TGG | + | chr2_4:49645759-49645778 | Msa0332520:intron | 20.0% |
| !!! | TTTTTTAGATGGAATTTGTT+AGG | + | chr2_4:49645794-49645813 | Msa0332520:intron | 20.0% |
| !! | CGTAACAACATTAATAAATA+AGG | + | chr2_4:49645880-49645899 | Msa0332520:intron | 20.0% |
| !! | TACATACATACATACATATA+CGG | + | chr2_4:49645967-49645986 | Msa0332520:intron | 20.0% |
| !! | AAAGTTTAATAGAGACAAAA+GGG | - | chr2_4:49646071-49646090 | None:intergenic | 20.0% |
| !! | TAAAGTTTAATAGAGACAAA+AGG | - | chr2_4:49646072-49646091 | None:intergenic | 20.0% |
| ! | ATCATATTCATCATACCAAT+GGG | + | chr2_4:49644342-49644361 | Msa0332520:intron | 25.0% |
| ! | TTTATGACTGTTTCAACATT+TGG | + | chr2_4:49644473-49644492 | Msa0332520:intron | 25.0% |
| !!! | TCTTTTTCATCACAATCTTT+TGG | + | chr2_4:49644643-49644662 | Msa0332520:intron | 25.0% |
| ! | CGTTACATTGAAATATTTAC+TGG | + | chr2_4:49644863-49644882 | Msa0332520:intron | 25.0% |
| !! | TCATCAAATCTCTTTTAACA+TGG | + | chr2_4:49644898-49644917 | Msa0332520:intron | 25.0% |
| ! | CCAAATACAATTTATCAAAC+AGG | - | chr2_4:49645023-49645042 | None:intergenic | 25.0% |
| ! | CCTGTTTGATAAATTGTATT+TGG | + | chr2_4:49645020-49645039 | Msa0332520:intron | 25.0% |
| ! | TTCTTTAAACTCTGTCAAAA+AGG | - | chr2_4:49645375-49645394 | None:intergenic | 25.0% |
| ! | ACATACATACATACATATAC+GGG | + | chr2_4:49645968-49645987 | Msa0332520:intron | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | - | chr2_4:49646048-49646067 | None:intergenic | 25.0% |
| !!! | TGTTTTGGTAAATAACTAGT+AGG | + | chr2_4:49646158-49646177 | Msa0332520:intron | 25.0% |
| ! | AACCATCTATTTAATATCCA+AGG | - | chr2_4:49646408-49646427 | None:intergenic | 25.0% |
| ACTCTAATTATATTCTCACC+TGG | + | chr2_4:49644100-49644119 | Msa0332520:CDS | 30.0% | |
| GATCATATTCATCATACCAA+TGG | + | chr2_4:49644341-49644360 | Msa0332520:intron | 30.0% | |
| ! | CTCTTTTAACATGGCTTATA+TGG | + | chr2_4:49644907-49644926 | Msa0332520:intron | 30.0% |
| TCCTTTACAAACAATGTAGT+AGG | + | chr2_4:49645128-49645147 | Msa0332520:intron | 30.0% | |
| ACCTACTACATTGTTTGTAA+AGG | - | chr2_4:49645132-49645151 | None:intergenic | 30.0% | |
| !! | GGTTTATTACTCACTTTTGT+AGG | + | chr2_4:49645149-49645168 | Msa0332520:intron | 30.0% |
| CAACGACATTGTAAATCAAT+TGG | - | chr2_4:49645249-49645268 | None:intergenic | 30.0% | |
| TACCATATCAATGATCTTAC+GGG | - | chr2_4:49645714-49645733 | None:intergenic | 30.0% | |
| CTACCATATCAATGATCTTA+CGG | - | chr2_4:49645715-49645734 | None:intergenic | 30.0% | |
| !!! | GTGCAATGCATTTTTTTAGA+TGG | + | chr2_4:49645783-49645802 | Msa0332520:intron | 30.0% |
| AACCTAATAAAGCAAATGAG+CGG | + | chr2_4:49645830-49645849 | Msa0332520:intron | 30.0% | |
| CATACATACATACATATACG+GGG | + | chr2_4:49645969-49645988 | Msa0332520:intron | 30.0% | |
| ATACATACATACATATACGG+GGG | + | chr2_4:49645970-49645989 | Msa0332520:intron | 30.0% | |
| ! | ATAGAAAAACATGGGTGTTT+TGG | + | chr2_4:49646143-49646162 | Msa0332520:intron | 30.0% |
| ! | ATGACTTTTGTATGTGAGAA+TGG | + | chr2_4:49646366-49646385 | Msa0332520:intron | 30.0% |
| AGAATGGTGAGAACAATTAT+AGG | + | chr2_4:49646382-49646401 | Msa0332520:intron | 30.0% | |
| ! | TTTTATGGAGTTTCCTACAT+CGG | - | chr2_4:49646699-49646718 | None:intergenic | 30.0% |
| !!! | TCTGGATTGGTTTCTTTTTA+TGG | - | chr2_4:49646714-49646733 | None:intergenic | 30.0% |
| AATGAAAATACCTTCTCACC+AGG | - | chr2_4:49644121-49644140 | None:intergenic | 35.0% | |
| !!! | GGTGAGAAGGTATTTTCATT+TGG | + | chr2_4:49644121-49644140 | Msa0332520:intron | 35.0% |
| TATATGACCGTTTCAACACT+TGG | - | chr2_4:49644151-49644170 | None:intergenic | 35.0% | |
| ATCATATTCGACCCATCAAT+GGG | - | chr2_4:49644276-49644295 | None:intergenic | 35.0% | |
| ! | TTTTTGTAGACTCTTCCCAT+TGG | - | chr2_4:49644360-49644379 | None:intergenic | 35.0% |
| ATGCAATTCATTGAGGCATA+CGG | - | chr2_4:49644211-49644230 | None:intergenic | 35.0% | |
| ! | TTGCATCATGCCATTGTTTT+AGG | + | chr2_4:49644427-49644446 | Msa0332520:intron | 35.0% |
| !! | TGCATCATGCCATTGTTTTA+GGG | + | chr2_4:49644428-49644447 | Msa0332520:intron | 35.0% |
| CATAAATCGTTATCTCTCTC+AGG | - | chr2_4:49644459-49644478 | None:intergenic | 35.0% | |
| GGTGAGAAGGTAATTTCATT+TGG | - | chr2_4:49644503-49644522 | None:intergenic | 35.0% | |
| AATGAAATTACCTTCTCACC+AGG | + | chr2_4:49644503-49644522 | Msa0332520:intron | 35.0% | |
| GCTCTAATTATATTCTCACC+TGG | - | chr2_4:49644524-49644543 | None:intergenic | 35.0% | |
| AGCAACATATGCACCATAAA+AGG | + | chr2_4:49644541-49644560 | Msa0332520:intron | 35.0% | |
| GCAACATATGCACCATAAAA+GGG | + | chr2_4:49644542-49644561 | Msa0332520:intron | 35.0% | |
| AGAGAGAGAGAGAGAAATAT+GGG | + | chr2_4:49644734-49644753 | Msa0332520:intron | 35.0% | |
| ACATTGTAATTGGGTGTGAA+GGG | + | chr2_4:49644790-49644809 | Msa0332520:intron | 35.0% | |
| !! | ATAAATCCTAGTCTTGAGAG+CGG | - | chr2_4:49645185-49645204 | None:intergenic | 35.0% |
| CTCTCAAGACTAGGATTTAT+AGG | + | chr2_4:49645185-49645204 | Msa0332520:intron | 35.0% | |
| ATATTGCAACCATCTCATAG+TGG | - | chr2_4:49645452-49645471 | None:intergenic | 35.0% | |
| AACCCGTAAGATCATTGATA+TGG | + | chr2_4:49645709-49645728 | Msa0332520:intron | 35.0% | |
| ACCTAATAAAGCAAATGAGC+GGG | + | chr2_4:49645831-49645850 | Msa0332520:intron | 35.0% | |
| CAAATGAGCGGGAAAAAATT+AGG | + | chr2_4:49645842-49645861 | Msa0332520:intron | 35.0% | |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr2_4:49646193-49646212 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr2_4:49646193-49646212 | Msa0332520:intron | 35.0% |
| GGCCTTGGATATTAAATAGA+TGG | + | chr2_4:49646403-49646422 | Msa0332520:intron | 35.0% | |
| TTTATGGAGTTTCCTACATC+GGG | - | chr2_4:49646698-49646717 | None:intergenic | 35.0% | |
| ! | AGTTTTCGATTTATGGGATC+TGG | - | chr2_4:49646732-49646751 | None:intergenic | 35.0% |
| ! | AGGAGCAGTTTTCGATTTAT+GGG | - | chr2_4:49646738-49646757 | None:intergenic | 35.0% |
| ! | AAGGAGCAGTTTTCGATTTA+TGG | - | chr2_4:49646739-49646758 | None:intergenic | 35.0% |
| AGTAACATATGCACCACAGA+GGG | - | chr2_4:49644083-49644102 | None:intergenic | 40.0% | |
| TATATTCTCACCTGGTGAGA+AGG | + | chr2_4:49644108-49644127 | Msa0332520:CDS | 40.0% | |
| !! | TGGTCAACCAAGTGTTGAAA+CGG | + | chr2_4:49644141-49644160 | Msa0332520:intron | 40.0% |
| CAGTTTCCACCCTAAAACAA+TGG | + | chr2_4:49644184-49644203 | Msa0332520:intron | 40.0% | |
| !! | TGCATCACGCCATTGTTTTA+GGG | - | chr2_4:49644196-49644215 | None:intergenic | 40.0% |
| ! | TTGCATCACGCCATTGTTTT+AGG | - | chr2_4:49644197-49644216 | None:intergenic | 40.0% |
| AAAAATGAGCTTGCGCACTT+TGG | - | chr2_4:49644242-49644261 | None:intergenic | 40.0% | |
| ! | AAAGTGCGCAAGCTCATTTT+TGG | + | chr2_4:49644241-49644260 | Msa0332520:intron | 40.0% |
| GATCATATTCGACCCATCAA+TGG | - | chr2_4:49644277-49644296 | None:intergenic | 40.0% | |
| ! | GAATTGAGCTTGCACACTTT+TGG | + | chr2_4:49644382-49644401 | Msa0332520:intron | 40.0% |
| TGGCATGATGCAATTCATTG+AGG | - | chr2_4:49644420-49644439 | None:intergenic | 40.0% | |
| !!! | ATCATGCCATTGTTTTAGGG+TGG | + | chr2_4:49644431-49644450 | Msa0332520:intron | 40.0% |
| TATATTCTCACCTGGTGAGA+AGG | - | chr2_4:49644108-49644127 | None:intergenic | 40.0% | |
| ! | AGTTTTCTTTCCACTCGACA+TGG | + | chr2_4:49644674-49644693 | Msa0332520:intron | 40.0% |
| GAGAGAGAGAGAGAGAAATA+TGG | + | chr2_4:49644733-49644752 | Msa0332520:intron | 40.0% | |
| AGAGAGAGAGAAATATGGGT+GGG | + | chr2_4:49644738-49644757 | Msa0332520:intron | 40.0% | |
| CACATTGTAATTGGGTGTGA+AGG | + | chr2_4:49644789-49644808 | Msa0332520:intron | 40.0% | |
| CATTGTAATTGGGTGTGAAG+GGG | + | chr2_4:49644791-49644810 | Msa0332520:intron | 40.0% | |
| TGTTCGAATCCACTATGAGA+TGG | + | chr2_4:49645440-49645459 | Msa0332520:intron | 40.0% | |
| ! | TCCCGCTCATTTGCTTTATT+AGG | - | chr2_4:49645835-49645854 | None:intergenic | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr2_4:49646197-49646216 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr2_4:49646196-49646215 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr2_4:49646196-49646215 | Msa0332520:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr2_4:49646197-49646216 | Msa0332520:intron | 40.0% |
| GTGAGAACAATTATAGGCCT+TGG | + | chr2_4:49646388-49646407 | Msa0332520:intron | 40.0% | |
| CAACACGTGATGTTGAGATA+AGG | - | chr2_4:49646487-49646506 | None:intergenic | 40.0% | |
| AGAAGAAACAACAGCCTTGA+AGG | - | chr2_4:49646522-49646541 | None:intergenic | 40.0% | |
| TCGATTTATGGGATCTGGAT+TGG | - | chr2_4:49646727-49646746 | None:intergenic | 40.0% | |
| TATGGGATCGTGAAGAACAA+AGG | - | chr2_4:49646758-49646777 | None:intergenic | 40.0% | |
| GAGTAACATATGCACCACAG+AGG | - | chr2_4:49644084-49644103 | None:intergenic | 45.0% | |
| !!! | ATCACGCCATTGTTTTAGGG+TGG | - | chr2_4:49644193-49644212 | None:intergenic | 45.0% |
| TGGCGTGATGCAATTCATTG+AGG | + | chr2_4:49644204-49644223 | Msa0332520:intron | 45.0% | |
| CAGGTTCCACCCTAAAACAA+TGG | - | chr2_4:49644440-49644459 | None:intergenic | 45.0% | |
| TCGAGTGGAAAGAAAACTCG+AGG | - | chr2_4:49644672-49644691 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAAATATGGG+TGG | + | chr2_4:49644737-49644756 | Msa0332520:intron | 45.0% | |
| AATTCACCGCTCTCAAGACT+AGG | + | chr2_4:49645176-49645195 | Msa0332520:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | + | chr2_4:49646003-49646022 | Msa0332520:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | - | chr2_4:49646003-49646022 | None:intergenic | 45.0% | |
| TGACTCTTCTTCCTCCTTCA+AGG | + | chr2_4:49646505-49646524 | Msa0332520:intron | 45.0% | |
| AGAAACAACAGCCTTGAAGG+AGG | - | chr2_4:49646519-49646538 | None:intergenic | 45.0% | |
| TGCATGAAAGTGGCGATAAC+GGG | - | chr2_4:49646671-49646690 | None:intergenic | 45.0% | |
| GTGCATGAAAGTGGCGATAA+CGG | - | chr2_4:49646672-49646691 | None:intergenic | 45.0% | |
| !!! | AAATATTTTCTTAAAAAAAA+AGG | + | chr2_4:49645736-49645755 | Msa0332520:intron | 5.0% |
| !!! | TAAACTTTATTTTAATTAAA+AGG | + | chr2_4:49646083-49646102 | Msa0332520:intron | 5.0% |
| GCTTCGAGAAAGTCACTTGC+AGG | - | chr2_4:49644604-49644623 | None:intergenic | 50.0% | |
| !! | GTGCGCAAGCTCATTTTTGG+TGG | + | chr2_4:49644244-49644263 | Msa0332520:intron | 50.0% |
| TGGTGGAGTTGTCCCATTGA+TGG | + | chr2_4:49644261-49644280 | Msa0332520:intron | 50.0% | |
| GGTGGAGTTGTCCCATTGAT+GGG | + | chr2_4:49644262-49644281 | Msa0332520:intron | 50.0% | |
| ! | GCGAGCTTTGCACCCTTTTA+TGG | - | chr2_4:49644557-49644576 | None:intergenic | 50.0% |
| !! | ACTTTCTCGAAGCGTCGTAG+TGG | - | chr2_4:49644597-49644616 | None:intergenic | 50.0% |
| GCTTCGAGAAAGTCACTTGC+AGG | + | chr2_4:49644604-49644623 | Msa0332520:CDS | 50.0% | |
| !! | CGATCGTGAATTGGTGGTGA+CGG | - | chr2_4:49646616-49646635 | None:intergenic | 50.0% |
| CGTCACCACCAATTCACGAT+CGG | + | chr2_4:49646614-49646633 | Msa0332520:CDS | 50.0% | |
| CGATCGTGAATCGATGGTGA+CGG | - | chr2_4:49646645-49646664 | None:intergenic | 50.0% | |
| !! | CGTCACCATCGATTCACGAT+CGG | + | chr2_4:49646643-49646662 | Msa0332520:CDS | 50.0% |
| CTTTCGTGAAGAGCCCACTG+CGG | - | chr2_4:49644045-49644064 | None:intergenic | 55.0% | |
| AGCAAGCTTTGCACCCTCTG+TGG | + | chr2_4:49644067-49644086 | Msa0332520:CDS | 55.0% | |
| TGTGCTTCAGCCATGTCGAG+TGG | - | chr2_4:49644687-49644706 | None:intergenic | 55.0% | |
| AGGGTTGGGTTCGCTAAGGA+GGG | - | chr2_4:49646547-49646566 | None:intergenic | 55.0% | |
| GGGTTTCCGACGAGAATCTG+TGG | - | chr2_4:49646592-49646611 | None:intergenic | 55.0% | |
| !! | TCGTGAATTGGTGGTGACGG+CGG | - | chr2_4:49646613-49646632 | None:intergenic | 55.0% |
| !! | TCGTGAATCGATGGTGACGG+CGG | - | chr2_4:49646642-49646661 | None:intergenic | 55.0% |
| GGGTTCCGATCGTGAATCGA+TGG | - | chr2_4:49646651-49646670 | None:intergenic | 55.0% | |
| ATCGGGCAGGTGCATGAAAG+TGG | - | chr2_4:49646681-49646700 | None:intergenic | 55.0% | |
| TTCATGCACCTGCCCGATGT+AGG | + | chr2_4:49646683-49646702 | Msa0332520:CDS | 55.0% | |
| TGGAGTTTCCTACATCGGGC+AGG | - | chr2_4:49646694-49646713 | None:intergenic | 55.0% | |
| !! | ACTTTCTCGAAGCGCCGCAG+TGG | + | chr2_4:49644028-49644047 | Msa0332520:CDS | 60.0% |
| !! | CTTTCTCGAAGCGCCGCAGT+GGG | + | chr2_4:49644029-49644048 | Msa0332520:CDS | 60.0% |
| ! | CTTTTGACCCGTGCGTCGCA+CGG | + | chr2_4:49645648-49645667 | Msa0332520:intron | 60.0% |
| ! | TTTTGACCCGTGCGTCGCAC+GGG | + | chr2_4:49645649-49645668 | Msa0332520:intron | 60.0% |
| AGAAAACCCGTGCGACGCAC+GGG | - | chr2_4:49645658-49645677 | None:intergenic | 60.0% | |
| GAGAAAACCCGTGCGACGCA+CGG | - | chr2_4:49645659-49645678 | None:intergenic | 60.0% | |
| GGGTTGGGTTCGCTAAGGAG+GGG | - | chr2_4:49646546-49646565 | None:intergenic | 60.0% | |
| GAGGGTTGGGTTCGCTAAGG+AGG | - | chr2_4:49646548-49646567 | None:intergenic | 60.0% | |
| ! | GTTTGGAGTCGGGGAGGGTT+GGG | - | chr2_4:49646561-49646580 | None:intergenic | 60.0% |
| AATCTGTGGCGACGGCGGTT+TGG | - | chr2_4:49646578-49646597 | None:intergenic | 60.0% | |
| ACGAGAATCTGTGGCGACGG+CGG | - | chr2_4:49646583-49646602 | None:intergenic | 60.0% | |
| CCGACGAGAATCTGTGGCGA+CGG | - | chr2_4:49646586-49646605 | None:intergenic | 60.0% | |
| CCGTCGCCACAGATTCTCGT+CGG | + | chr2_4:49646583-49646602 | Msa0332520:CDS | 60.0% | |
| !! | CGTGAATTGGTGGTGACGGC+GGG | - | chr2_4:49646612-49646631 | None:intergenic | 60.0% |
| CGGGTCCGATCGTGAATTGG+TGG | - | chr2_4:49646622-49646641 | None:intergenic | 60.0% | |
| !! | CGTGAATCGATGGTGACGGC+GGG | - | chr2_4:49646641-49646660 | None:intergenic | 60.0% |
| GGGGAGGGTTGGGTTCGCTA+AGG | - | chr2_4:49646551-49646570 | None:intergenic | 65.0% | |
| ! | GGTTTGGAGTCGGGGAGGGT+TGG | - | chr2_4:49646562-49646581 | None:intergenic | 65.0% |
| ! | TGGCGACGGCGGTTTGGAGT+CGG | - | chr2_4:49646572-49646591 | None:intergenic | 65.0% |
| CGGCGGGTCCGATCGTGAAT+TGG | - | chr2_4:49646625-49646644 | None:intergenic | 65.0% | |
| ! | CGGCGGTTTGGAGTCGGGGA+GGG | - | chr2_4:49646566-49646585 | None:intergenic | 70.0% |
| ! | ACGGCGGTTTGGAGTCGGGG+AGG | - | chr2_4:49646567-49646586 | None:intergenic | 70.0% |
| ! | GCGACGGCGGTTTGGAGTCG+GGG | - | chr2_4:49646570-49646589 | None:intergenic | 70.0% |
| ! | GGCGACGGCGGTTTGGAGTC+GGG | - | chr2_4:49646571-49646590 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 49643965 | 49646778 | 49643965 | ID=Msa0332520;Name=Msa0332520 |
| chr2_4 | mRNA | 49643965 | 49646778 | 49643965 | ID=Msa0332520-mRNA-1;Parent=Msa0332520;Name=Msa0332520-mRNA-1;_AED=0.72;_eAED=0.72;_QI=0|0|0|0.33|1|1|3|0|150 |
| chr2_4 | exon | 49643965 | 49644129 | 49643965 | ID=Msa0332520-mRNA-1:exon:14879;Parent=Msa0332520-mRNA-1 |
| chr2_4 | exon | 49644563 | 49644625 | 49644563 | ID=Msa0332520-mRNA-1:exon:14880;Parent=Msa0332520-mRNA-1 |
| chr2_4 | exon | 49646554 | 49646778 | 49646554 | ID=Msa0332520-mRNA-1:exon:14881;Parent=Msa0332520-mRNA-1 |
| chr2_4 | CDS | 49643965 | 49644129 | 49643965 | ID=Msa0332520-mRNA-1:cds;Parent=Msa0332520-mRNA-1 |
| chr2_4 | CDS | 49644563 | 49644625 | 49644563 | ID=Msa0332520-mRNA-1:cds;Parent=Msa0332520-mRNA-1 |
| chr2_4 | CDS | 49646554 | 49646778 | 49646554 | ID=Msa0332520-mRNA-1:cds;Parent=Msa0332520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
