Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333640 | XP_013464662.2 | 93.220 | 177 | 12 | 0 | 1 | 177 | 36 | 212 | 3.92e-104 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333640 | sp|Q38741|SBP1_ANTMA | 60.177 | 113 | 41 | 1 | 30 | 142 | 22 | 130 | 8.29e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0333640 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333640 | MtrunA17_Chr2g0317041 | 91.818 | 110 | 9 | 0 | 1 | 110 | 36 | 145 | 1.65e-56 | 175 |
| Msa0333640 | MtrunA17_Chr8g0360361 | 68.333 | 120 | 36 | 1 | 60 | 177 | 61 | 180 | 1.79e-51 | 163 |
| Msa0333640 | MtrunA17_Chr2g0317031 | 95.522 | 67 | 3 | 0 | 111 | 177 | 9 | 75 | 3.00e-42 | 136 |
| Msa0333640 | MtrunA17_Chr2g0282521 | 60.952 | 105 | 39 | 1 | 38 | 140 | 36 | 140 | 3.14e-38 | 128 |
| Msa0333640 | MtrunA17_Chr4g0046991 | 67.391 | 92 | 30 | 0 | 48 | 139 | 57 | 148 | 4.02e-38 | 128 |
| Msa0333640 | MtrunA17_Chr8g0334671 | 61.765 | 102 | 39 | 0 | 37 | 138 | 160 | 261 | 4.76e-36 | 127 |
| Msa0333640 | MtrunA17_Chr3g0122411 | 64.045 | 89 | 32 | 0 | 49 | 137 | 150 | 238 | 8.30e-36 | 129 |
| Msa0333640 | MtrunA17_Chr7g0258471 | 72.727 | 77 | 21 | 0 | 61 | 137 | 139 | 215 | 1.70e-34 | 125 |
| Msa0333640 | MtrunA17_Chr2g0302791 | 67.442 | 86 | 28 | 0 | 64 | 149 | 139 | 224 | 1.73e-34 | 128 |
| Msa0333640 | MtrunA17_Chr7g0270541 | 67.391 | 92 | 30 | 0 | 56 | 147 | 137 | 228 | 3.39e-34 | 127 |
| Msa0333640 | MtrunA17_Chr1g0194121 | 62.376 | 101 | 38 | 0 | 49 | 149 | 132 | 232 | 4.32e-34 | 127 |
| Msa0333640 | MtrunA17_Chr7g0231911 | 63.158 | 95 | 35 | 0 | 56 | 150 | 141 | 235 | 1.02e-33 | 121 |
| Msa0333640 | MtrunA17_Chr2g0308321 | 59.813 | 107 | 42 | 1 | 63 | 169 | 170 | 275 | 1.44e-33 | 124 |
| Msa0333640 | MtrunA17_Chr5g0420051 | 58.947 | 95 | 39 | 0 | 62 | 156 | 179 | 273 | 2.92e-32 | 119 |
| Msa0333640 | MtrunA17_Chr4g0061651 | 70.667 | 75 | 22 | 0 | 63 | 137 | 122 | 196 | 3.66e-32 | 119 |
| Msa0333640 | MtrunA17_Chr1g0162871 | 70.130 | 77 | 23 | 0 | 62 | 138 | 102 | 178 | 3.53e-31 | 118 |
| Msa0333640 | MtrunA17_Chr8g0377401 | 59.756 | 82 | 33 | 0 | 61 | 142 | 159 | 240 | 2.58e-30 | 111 |
| Msa0333640 | MtrunA17_Chr3g0132091 | 54.839 | 93 | 42 | 0 | 64 | 156 | 73 | 165 | 2.72e-30 | 113 |
| Msa0333640 | MtrunA17_Chr8g0377421 | 42.424 | 132 | 74 | 2 | 7 | 137 | 75 | 205 | 2.25e-29 | 109 |
| Msa0333640 | MtrunA17_Chr7g0224821 | 51.485 | 101 | 48 | 1 | 63 | 163 | 76 | 175 | 4.21e-29 | 110 |
| Msa0333640 | MtrunA17_Chr8g0386271 | 60.714 | 84 | 33 | 0 | 64 | 147 | 99 | 182 | 1.05e-28 | 109 |
| Msa0333640 | MtrunA17_Chr2g0286661 | 55.405 | 74 | 33 | 0 | 64 | 137 | 103 | 176 | 1.01e-23 | 97.1 |
| Msa0333640 | MtrunA17_Chr1g0175031 | 62.963 | 54 | 20 | 0 | 57 | 110 | 67 | 120 | 5.21e-17 | 73.6 |
| Msa0333640 | MtrunA17_Chr8g0377431 | 56.897 | 58 | 25 | 0 | 62 | 119 | 149 | 206 | 5.04e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333640 | AT1G53160.3 | 63.551 | 107 | 36 | 2 | 50 | 156 | 42 | 145 | 5.41e-39 | 131 |
| Msa0333640 | AT1G53160.2 | 65.049 | 103 | 33 | 2 | 54 | 156 | 46 | 145 | 9.50e-39 | 130 |
| Msa0333640 | AT1G53160.1 | 65.049 | 103 | 33 | 2 | 54 | 156 | 46 | 145 | 9.50e-39 | 130 |
| Msa0333640 | AT3G15270.1 | 51.351 | 148 | 65 | 2 | 7 | 148 | 1 | 147 | 1.51e-38 | 130 |
| Msa0333640 | AT1G02065.1 | 61.321 | 106 | 37 | 2 | 50 | 151 | 171 | 276 | 9.16e-37 | 130 |
| Msa0333640 | AT2G33810.1 | 71.250 | 80 | 23 | 0 | 60 | 139 | 50 | 129 | 6.82e-36 | 122 |
| Msa0333640 | AT1G69170.1 | 56.731 | 104 | 45 | 0 | 34 | 137 | 94 | 197 | 2.99e-35 | 127 |
| Msa0333640 | AT3G60030.1 | 62.136 | 103 | 34 | 2 | 64 | 166 | 127 | 224 | 1.26e-34 | 129 |
| Msa0333640 | AT1G20980.1 | 60.784 | 102 | 38 | 1 | 54 | 155 | 112 | 211 | 8.57e-34 | 126 |
| Msa0333640 | AT2G42200.1 | 68.675 | 83 | 26 | 0 | 62 | 144 | 72 | 154 | 1.85e-33 | 122 |
| Msa0333640 | AT2G47070.1 | 55.963 | 109 | 46 | 1 | 64 | 172 | 106 | 212 | 8.68e-33 | 123 |
| Msa0333640 | AT5G43270.3 | 61.798 | 89 | 34 | 0 | 58 | 146 | 163 | 251 | 4.17e-32 | 119 |
| Msa0333640 | AT5G43270.1 | 61.798 | 89 | 34 | 0 | 58 | 146 | 163 | 251 | 4.17e-32 | 119 |
| Msa0333640 | AT5G43270.2 | 61.798 | 89 | 34 | 0 | 58 | 146 | 163 | 251 | 4.17e-32 | 119 |
| Msa0333640 | AT1G76580.1 | 54.717 | 106 | 47 | 1 | 62 | 167 | 112 | 216 | 9.92e-32 | 120 |
| Msa0333640 | AT1G76580.3 | 54.717 | 106 | 47 | 1 | 62 | 167 | 112 | 216 | 4.95e-31 | 118 |
| Msa0333640 | AT1G76580.2 | 54.717 | 106 | 47 | 1 | 62 | 167 | 112 | 216 | 5.70e-31 | 118 |
| Msa0333640 | AT3G57920.1 | 67.089 | 79 | 26 | 0 | 64 | 142 | 59 | 137 | 6.06e-31 | 115 |
| Msa0333640 | AT1G27370.6 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 3.89e-30 | 112 |
| Msa0333640 | AT1G27370.1 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0333640 | AT1G27370.5 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0333640 | AT1G27370.3 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0333640 | AT1G27370.2 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0333640 | AT1G27370.4 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0333640 | AT1G27370.7 | 57.143 | 91 | 39 | 0 | 47 | 137 | 159 | 249 | 1.11e-29 | 112 |
| Msa0333640 | AT5G50570.1 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa0333640 | AT5G50570.2 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa0333640 | AT5G50670.1 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa0333640 | AT5G50670.2 | 63.158 | 76 | 28 | 0 | 62 | 137 | 99 | 174 | 7.77e-29 | 109 |
| Msa0333640 | AT1G27360.2 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa0333640 | AT1G27360.1 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa0333640 | AT1G27360.3 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa0333640 | AT1G27360.4 | 60.976 | 82 | 32 | 0 | 56 | 137 | 167 | 248 | 9.01e-29 | 110 |
| Msa0333640 | AT5G18830.2 | 47.368 | 95 | 47 | 1 | 64 | 155 | 138 | 232 | 6.64e-22 | 92.4 |
| Msa0333640 | AT5G18830.1 | 47.368 | 95 | 47 | 1 | 64 | 155 | 138 | 232 | 6.75e-22 | 92.4 |
| Msa0333640 | AT5G18830.3 | 47.368 | 95 | 47 | 1 | 64 | 155 | 138 | 232 | 7.31e-22 | 92.0 |
| Msa0333640 | AT1G02065.2 | 60.811 | 74 | 24 | 2 | 50 | 118 | 171 | 244 | 1.39e-21 | 88.6 |
| Msa0333640 | AT2G47070.2 | 74.510 | 51 | 13 | 0 | 88 | 138 | 1 | 51 | 6.99e-20 | 86.7 |
Find 36 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTTCTACTTGACAAAA+AGG | 0.293853 | 2_4:-51588853 | None:intergenic |
| GCATCTGTTGTGGTGGTTGC+AGG | 0.368915 | 2_4:+51588943 | Msa0333640:CDS |
| AATGAACCTCACAAACCTTA+TGG | 0.389353 | 2_4:-51588915 | None:intergenic |
| AAACATCAGTTGAGAAGGTT+TGG | 0.391376 | 2_4:+51588701 | Msa0333640:CDS |
| GATCACACCTGCTACATTGT+TGG | 0.396569 | 2_4:-51588984 | None:intergenic |
| ATGAACATAACAAGTAGTTC+TGG | 0.412406 | 2_4:+51591479 | Msa0333640:CDS |
| AGCAAAATCATGATGGTGAT+TGG | 0.426111 | 2_4:+51591444 | Msa0333640:CDS |
| TGCACTGAAGGAAGCGGTAC+TGG | 0.443322 | 2_4:+51591419 | Msa0333640:CDS |
| AAGAAAGGTGTTTGTGTGAG+TGG | 0.453403 | 2_4:+51588793 | Msa0333640:CDS |
| AACCACCACAACAGATGCTT+TGG | 0.458273 | 2_4:-51588938 | None:intergenic |
| TTGTGGTGGTTGCAGGGATA+AGG | 0.463071 | 2_4:+51588950 | Msa0333640:CDS |
| CGGCGTCGTAAAAGCACTGC+TGG | 0.466987 | 2_4:+51591392 | Msa0333640:CDS |
| AGAAATAGAAGTTGAAGAAG+AGG | 0.475722 | 2_4:+51588741 | Msa0333640:CDS |
| GAAAATCTTCCACCTCTACT+TGG | 0.489950 | 2_4:-51588826 | None:intergenic |
| GAGATATCATCGTCGCCATA+AGG | 0.496552 | 2_4:+51588900 | Msa0333640:CDS |
| GGAAGCAAGGAATACAATAG+AGG | 0.502654 | 2_4:+51588672 | Msa0333640:CDS |
| GAAGCAAGGAATACAATAGA+GGG | 0.522960 | 2_4:+51588673 | Msa0333640:CDS |
| GTTGAAGAAGAGGAGGAAGG+TGG | 0.527678 | 2_4:+51588751 | Msa0333640:CDS |
| ACTGCTGGAACTTGCACTGA+AGG | 0.529046 | 2_4:+51591407 | Msa0333640:CDS |
| GAAGTTGAAGAAGAGGAGGA+AGG | 0.550030 | 2_4:+51588748 | Msa0333640:CDS |
| AATAGAAGTTGAAGAAGAGG+AGG | 0.552525 | 2_4:+51588744 | Msa0333640:CDS |
| AGAAAGGTGTTTGTGTGAGT+GGG | 0.554222 | 2_4:+51588794 | Msa0333640:CDS |
| TTCCAAAGCATCTGTTGTGG+TGG | 0.554775 | 2_4:+51588936 | Msa0333640:CDS |
| GAAGATGATGAGAAGAAGAA+AGG | 0.566806 | 2_4:+51588778 | Msa0333640:CDS |
| GAAGCAAACATCAGTTGAGA+AGG | 0.569996 | 2_4:+51588696 | Msa0333640:CDS |
| AGAAAAGAGCCAAGTAGAGG+TGG | 0.571945 | 2_4:+51588817 | Msa0333640:CDS |
| TGGTTGCAGGGATAAGGCAG+AGG | 0.586383 | 2_4:+51588956 | Msa0333640:CDS |
| GGAACTTGCACTGAAGGAAG+CGG | 0.610870 | 2_4:+51591413 | Msa0333640:CDS |
| CATCTGTTGTGGTGGTTGCA+GGG | 0.612833 | 2_4:+51588944 | Msa0333640:CDS |
| CATAGTACACAATGGAAGCA+AGG | 0.613876 | 2_4:+51588659 | None:intergenic |
| TCATTCCAAAGCATCTGTTG+TGG | 0.621345 | 2_4:+51588933 | Msa0333640:CDS |
| GGGAGAAAAGAGCCAAGTAG+AGG | 0.628005 | 2_4:+51588814 | Msa0333640:CDS |
| ACTGGCCAGCAAAATCATGA+TGG | 0.639807 | 2_4:+51591437 | Msa0333640:CDS |
| TCGTCGCCATAAGGTTTGTG+AGG | 0.640730 | 2_4:+51588909 | Msa0333640:CDS |
| GCTTAGCGCGACACAATGAA+CGG | 0.657384 | 2_4:+51591372 | Msa0333640:CDS |
| AAGCAAGGAATACAATAGAG+GGG | 0.716459 | 2_4:+51588674 | Msa0333640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATATATATTTTA+TGG | - | chr2_4:51589507-51589526 | None:intergenic | 0.0% |
| !! | TTCAATATAATTATATTTGT+CGG | - | chr2_4:51589111-51589130 | None:intergenic | 10.0% |
| !!! | AATTTAAGTTTTAAAACAAT+GGG | - | chr2_4:51589309-51589328 | None:intergenic | 10.0% |
| !!! | AAATTTAAGTTTTAAAACAA+TGG | - | chr2_4:51589310-51589329 | None:intergenic | 10.0% |
| !! | TATTATAATCAAATAGTTTA+TGG | - | chr2_4:51589553-51589572 | None:intergenic | 10.0% |
| !! | ATAAACTATTTGATTATAAT+AGG | + | chr2_4:51589552-51589571 | Msa0333640:intron | 10.0% |
| !!! | ACTTATTATTTTTATAGTTT+AGG | + | chr2_4:51589674-51589693 | Msa0333640:intron | 10.0% |
| !!! | CTTATTATTTTTATAGTTTA+GGG | + | chr2_4:51589675-51589694 | Msa0333640:intron | 10.0% |
| !!! | TTTCAAATATTTTTTTTACA+GGG | - | chr2_4:51590410-51590429 | None:intergenic | 10.0% |
| !!! | ATTTCAAATATTTTTTTTAC+AGG | - | chr2_4:51590411-51590430 | None:intergenic | 10.0% |
| !!! | TTAAAACAATTTTTTTTACA+GGG | - | chr2_4:51590438-51590457 | None:intergenic | 10.0% |
| !!! | TTTAAAACAATTTTTTTTAC+AGG | - | chr2_4:51590439-51590458 | None:intergenic | 10.0% |
| !!! | TTAGTTTTTTTTTTAAAATC+TGG | + | chr2_4:51590720-51590739 | Msa0333640:intron | 10.0% |
| !!! | AAAAAAAATTTGTTTGAAAA+AGG | - | chr2_4:51591049-51591068 | None:intergenic | 10.0% |
| !!! | TTTCAAATTTTTATTTTTAC+AGG | + | chr2_4:51591080-51591099 | Msa0333640:intron | 10.0% |
| !!! | TTCAAATTTTTATTTTTACA+GGG | + | chr2_4:51591081-51591100 | Msa0333640:intron | 10.0% |
| !!! | AAAAATCTGTTTTATTAGTT+GGG | + | chr2_4:51589964-51589983 | Msa0333640:intron | 15.0% |
| !!! | AAAAAACGTTTTTTATTATG+TGG | - | chr2_4:51590559-51590578 | None:intergenic | 15.0% |
| !! | ATATGATCGAAAAAATTATT+TGG | - | chr2_4:51590657-51590676 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTTTAATTACG+TGG | + | chr2_4:51590960-51590979 | Msa0333640:intron | 15.0% |
| !!! | TTCAAACAAATTTTTTTTAC+AGG | + | chr2_4:51591051-51591070 | Msa0333640:intron | 15.0% |
| !!! | TCAAACAAATTTTTTTTACA+GGG | + | chr2_4:51591052-51591071 | Msa0333640:intron | 15.0% |
| !!! | ACTCTTTCTTTTATTTGAAT+AGG | + | chr2_4:51589219-51589238 | Msa0333640:intron | 20.0% |
| !! | ATGCTACTAATTTATATAGA+TGG | - | chr2_4:51589379-51589398 | None:intergenic | 20.0% |
| !! | GTCTTTAACATTTAATAGTA+TGG | + | chr2_4:51589617-51589636 | Msa0333640:intron | 20.0% |
| !!! | GAATATGCTCTTTTTATATT+TGG | + | chr2_4:51589755-51589774 | Msa0333640:intron | 20.0% |
| !!! | CAAAAATCTGTTTTATTAGT+TGG | + | chr2_4:51589963-51589982 | Msa0333640:intron | 20.0% |
| !!! | AAAATCTGTTTTATTAGTTG+GGG | + | chr2_4:51589965-51589984 | Msa0333640:intron | 20.0% |
| !!! | ACCATTATAAGTATATTTTC+GGG | - | chr2_4:51590082-51590101 | None:intergenic | 20.0% |
| !!! | CACCATTATAAGTATATTTT+CGG | - | chr2_4:51590083-51590102 | None:intergenic | 20.0% |
| ! | AGTTTAGATTCTACGAAATA+CGG | - | chr2_4:51589202-51589221 | None:intergenic | 25.0% |
| ! | AAAATCAAGTTTACCATCTA+TGG | - | chr2_4:51589277-51589296 | None:intergenic | 25.0% |
| ! | AAAAAAAAAACACACAAGCA+AGG | - | chr2_4:51589427-51589446 | None:intergenic | 25.0% |
| !! | TTTTAATACCATGAAGATGA+AGG | - | chr2_4:51589858-51589877 | None:intergenic | 25.0% |
| ! | TCCCGAAAATATACTTATAA+TGG | + | chr2_4:51590078-51590097 | Msa0333640:intron | 25.0% |
| ! | CGAAAATATACTTATAATGG+TGG | + | chr2_4:51590081-51590100 | Msa0333640:intron | 25.0% |
| !!! | ATCTCTAAAACTTAGAGTTT+TGG | - | chr2_4:51590148-51590167 | None:intergenic | 25.0% |
| ! | AGATATTCTAAATTGAGTCA+AGG | + | chr2_4:51590188-51590207 | Msa0333640:intron | 25.0% |
| ! | GATATTCTAAATTGAGTCAA+GGG | + | chr2_4:51590189-51590208 | Msa0333640:intron | 25.0% |
| ! | ATTTGTTTGAAAAAGGTCAT+TGG | - | chr2_4:51591042-51591061 | None:intergenic | 25.0% |
| ! | AAAACTAACCCAAATTACAA+AGG | + | chr2_4:51591113-51591132 | Msa0333640:intron | 25.0% |
| !! | ATTTTCGTCCTTTGTAATTT+GGG | - | chr2_4:51591124-51591143 | None:intergenic | 25.0% |
| !!! | CGTCTTTAGTTTTACTTTAA+AGG | - | chr2_4:51591157-51591176 | None:intergenic | 25.0% |
| !!! | TTGACCTTTTTCACTATATT+AGG | + | chr2_4:51591235-51591254 | Msa0333640:intron | 25.0% |
| !!! | ATGGAACATTTCTTTGTTTT+GGG | - | chr2_4:51591263-51591282 | None:intergenic | 25.0% |
| AGAAATAGAAGTTGAAGAAG+AGG | + | chr2_4:51588741-51588760 | Msa0333640:CDS | 30.0% | |
| CAACTTTCTACTTGACAAAA+AGG | - | chr2_4:51588856-51588875 | None:intergenic | 30.0% | |
| ! | TTTTGTCAAGTAGAAAGTTG+TGG | + | chr2_4:51588856-51588875 | Msa0333640:CDS | 30.0% |
| TTCATAAGTTTAGATGACAG+TGG | - | chr2_4:51589020-51589039 | None:intergenic | 30.0% | |
| TCATCTAAACTTATGAAGCA+CGG | + | chr2_4:51589023-51589042 | Msa0333640:intron | 30.0% | |
| ! | GGATCCAAGAATTTTGAATA+GGG | + | chr2_4:51589349-51589368 | Msa0333640:intron | 30.0% |
| ! | GATCCAAGAATTTTGAATAG+GGG | + | chr2_4:51589350-51589369 | Msa0333640:intron | 30.0% |
| ! | ATCCAAGAATTTTGAATAGG+GGG | + | chr2_4:51589351-51589370 | Msa0333640:intron | 30.0% |
| TTTGGAAAACCTTTCTTTGT+TGG | - | chr2_4:51589819-51589838 | None:intergenic | 30.0% | |
| !! | CTAAAACTTAGAGTTTTGGT+TGG | - | chr2_4:51590144-51590163 | None:intergenic | 30.0% |
| AAAAATTCTCTCTCATCCAT+AGG | + | chr2_4:51590299-51590318 | Msa0333640:intron | 30.0% | |
| ! | GATTTTCGTCCTTTGTAATT+TGG | - | chr2_4:51591125-51591144 | None:intergenic | 30.0% |
| !!! | TGGAACATTTCTTTGTTTTG+GGG | - | chr2_4:51591262-51591281 | None:intergenic | 30.0% |
| !! | CATGGAACATTTCTTTGTTT+TGG | - | chr2_4:51591264-51591283 | None:intergenic | 30.0% |
| TTTCAAATAAGGTGAATGCA+TGG | - | chr2_4:51591282-51591301 | None:intergenic | 30.0% | |
| CTCATCAAAGGTTTCAAATA+AGG | - | chr2_4:51591293-51591312 | None:intergenic | 30.0% | |
| ATGAACATAACAAGTAGTTC+TGG | + | chr2_4:51591479-51591498 | Msa0333640:CDS | 30.0% | |
| GAAGCAAGGAATACAATAGA+GGG | + | chr2_4:51588673-51588692 | Msa0333640:CDS | 35.0% | |
| AAGCAAGGAATACAATAGAG+GGG | + | chr2_4:51588674-51588693 | Msa0333640:CDS | 35.0% | |
| AAACATCAGTTGAGAAGGTT+TGG | + | chr2_4:51588701-51588720 | Msa0333640:CDS | 35.0% | |
| AATAGAAGTTGAAGAAGAGG+AGG | + | chr2_4:51588744-51588763 | Msa0333640:CDS | 35.0% | |
| GAAGATGATGAGAAGAAGAA+AGG | + | chr2_4:51588778-51588797 | Msa0333640:CDS | 35.0% | |
| CTTTCTACTTGACAAAAAGG+TGG | - | chr2_4:51588853-51588872 | None:intergenic | 35.0% | |
| AATGAACCTCACAAACCTTA+TGG | - | chr2_4:51588918-51588937 | None:intergenic | 35.0% | |
| ATAAGTTTAGATGACAGTGG+AGG | - | chr2_4:51589017-51589036 | None:intergenic | 35.0% | |
| GATTCTACGAAATACGGATA+CGG | - | chr2_4:51589196-51589215 | None:intergenic | 35.0% | |
| CATCTATGGTATTCTACTAG+TGG | - | chr2_4:51589263-51589282 | None:intergenic | 35.0% | |
| CACTAGTAGAATACCATAGA+TGG | + | chr2_4:51589261-51589280 | Msa0333640:intron | 35.0% | |
| TTGAATCTTGTTGCCACTAA+CGG | + | chr2_4:51589328-51589347 | Msa0333640:intron | 35.0% | |
| AAAATTCTTGGATCCGTTAG+TGG | - | chr2_4:51589344-51589363 | None:intergenic | 35.0% | |
| ! | CGGATCCAAGAATTTTGAAT+AGG | + | chr2_4:51589348-51589367 | Msa0333640:intron | 35.0% |
| TTAGTTGAGCCAACAAAGAA+AGG | + | chr2_4:51589807-51589826 | Msa0333640:intron | 35.0% | |
| !! | AACTTGACTCGACTTTTCAT+TGG | - | chr2_4:51589929-51589948 | None:intergenic | 35.0% |
| !!! | AGTCGAGTCAAGTTAGTTTT+AGG | + | chr2_4:51589935-51589954 | Msa0333640:intron | 35.0% |
| AGACATATCATCTCAACTCT+TGG | - | chr2_4:51590057-51590076 | None:intergenic | 35.0% | |
| CGTTACAAAATCAACTTGCA+AGG | - | chr2_4:51590116-51590135 | None:intergenic | 35.0% | |
| TGCTGAATAATCCTTACCTA+TGG | - | chr2_4:51590318-51590337 | None:intergenic | 35.0% | |
| TGATAATCGTCCCTGTAATT+TGG | + | chr2_4:51590366-51590385 | Msa0333640:intron | 35.0% | |
| CAAAACTGGACCAAATTACA+GGG | - | chr2_4:51590379-51590398 | None:intergenic | 35.0% | |
| TCAAAACTGGACCAAATTAC+AGG | - | chr2_4:51590380-51590399 | None:intergenic | 35.0% | |
| AATCATCACAAAAGTGGCTA+GGG | - | chr2_4:51590467-51590486 | None:intergenic | 35.0% | |
| AAATCATCACAAAAGTGGCT+AGG | - | chr2_4:51590468-51590487 | None:intergenic | 35.0% | |
| !!! | TAGCCACTTTTGTGATGATT+TGG | + | chr2_4:51590467-51590486 | Msa0333640:intron | 35.0% |
| ATGCCAAATCATCACAAAAG+TGG | - | chr2_4:51590473-51590492 | None:intergenic | 35.0% | |
| !!! | GGAACATTTCTTTGTTTTGG+GGG | - | chr2_4:51591261-51591280 | None:intergenic | 35.0% |
| ! | AATCACCATCATGATTTTGC+TGG | - | chr2_4:51591445-51591464 | None:intergenic | 35.0% |
| ! | AGCAAAATCATGATGGTGAT+TGG | + | chr2_4:51591444-51591463 | Msa0333640:CDS | 35.0% |
| GGAAGCAAGGAATACAATAG+AGG | + | chr2_4:51588672-51588691 | Msa0333640:CDS | 40.0% | |
| GAAGCAAACATCAGTTGAGA+AGG | + | chr2_4:51588696-51588715 | Msa0333640:CDS | 40.0% | |
| !! | AAGAAAGGTGTTTGTGTGAG+TGG | + | chr2_4:51588793-51588812 | Msa0333640:CDS | 40.0% |
| !! | AGAAAGGTGTTTGTGTGAGT+GGG | + | chr2_4:51588794-51588813 | Msa0333640:CDS | 40.0% |
| GAAAATCTTCCACCTCTACT+TGG | - | chr2_4:51588829-51588848 | None:intergenic | 40.0% | |
| ! | TCATTCCAAAGCATCTGTTG+TGG | + | chr2_4:51588933-51588952 | Msa0333640:CDS | 40.0% |
| AACGACACATGTTTGACATC+AGG | - | chr2_4:51589071-51589090 | None:intergenic | 40.0% | |
| !! | CTACTAGTGGAAAGTGCTTA+GGG | - | chr2_4:51589250-51589269 | None:intergenic | 40.0% |
| !! | TCTACTAGTGGAAAGTGCTT+AGG | - | chr2_4:51589251-51589270 | None:intergenic | 40.0% |
| TGCCCCCTATTCAAAATTCT+TGG | - | chr2_4:51589356-51589375 | None:intergenic | 40.0% | |
| ! | TCGACTTTTCATTGGTGTGA+AGG | - | chr2_4:51589921-51589940 | None:intergenic | 40.0% |
| GAAGTCACTCATGTCACTAT+GGG | + | chr2_4:51589987-51590006 | Msa0333640:intron | 40.0% | |
| TTCTCTCTCATCCATAGGTA+AGG | + | chr2_4:51590304-51590323 | Msa0333640:intron | 40.0% | |
| ACAGGGACGAAAATCAAAAC+TGG | - | chr2_4:51591098-51591117 | None:intergenic | 40.0% | |
| !! | ACTTCTGATCTGATTTGGCA+TGG | - | chr2_4:51591015-51591034 | None:intergenic | 40.0% |
| ATGCCAAATCAGATCAGAAG+TGG | + | chr2_4:51591014-51591033 | Msa0333640:intron | 40.0% | |
| TGCCAAATCAGATCAGAAGT+GGG | + | chr2_4:51591015-51591034 | Msa0333640:intron | 40.0% | |
| GGGGCCTAATATAGTGAAAA+AGG | - | chr2_4:51591242-51591261 | None:intergenic | 40.0% | |
| GAAGTTGAAGAAGAGGAGGA+AGG | + | chr2_4:51588748-51588767 | Msa0333640:CDS | 45.0% | |
| AGAAAAGAGCCAAGTAGAGG+TGG | + | chr2_4:51588817-51588836 | Msa0333640:CDS | 45.0% | |
| GAGATATCATCGTCGCCATA+AGG | + | chr2_4:51588900-51588919 | Msa0333640:CDS | 45.0% | |
| ! | TTCCAAAGCATCTGTTGTGG+TGG | + | chr2_4:51588936-51588955 | Msa0333640:CDS | 45.0% |
| AACCACCACAACAGATGCTT+TGG | - | chr2_4:51588941-51588960 | None:intergenic | 45.0% | |
| ! | GGTTTTGCCAACAATGTAGC+AGG | + | chr2_4:51588977-51588996 | Msa0333640:CDS | 45.0% |
| GATCACACCTGCTACATTGT+TGG | - | chr2_4:51588987-51589006 | None:intergenic | 45.0% | |
| GCACGGACACTTATCGAATT+AGG | + | chr2_4:51589040-51589059 | Msa0333640:intron | 45.0% | |
| ! | TTTCCAAAGAGTGTGAGAGC+AGG | + | chr2_4:51589831-51589850 | Msa0333640:intron | 45.0% |
| GGAAGTCACTCATGTCACTA+TGG | + | chr2_4:51589986-51590005 | Msa0333640:intron | 45.0% | |
| ! | AGTTGCTGACTGTGCAACTT+TGG | + | chr2_4:51590510-51590529 | Msa0333640:intron | 45.0% |
| GCCAAATCAGATCAGAAGTG+GGG | + | chr2_4:51591016-51591035 | Msa0333640:intron | 45.0% | |
| ACTGGCCAGCAAAATCATGA+TGG | + | chr2_4:51591437-51591456 | Msa0333640:CDS | 45.0% | |
| !!! | TAAAAAAAATTGTTTTAAAA+TGG | + | chr2_4:51590440-51590459 | Msa0333640:intron | 5.0% |
| GTTGAAGAAGAGGAGGAAGG+TGG | + | chr2_4:51588751-51588770 | Msa0333640:CDS | 50.0% | |
| GGGAGAAAAGAGCCAAGTAG+AGG | + | chr2_4:51588814-51588833 | Msa0333640:CDS | 50.0% | |
| TCGTCGCCATAAGGTTTGTG+AGG | + | chr2_4:51588909-51588928 | Msa0333640:CDS | 50.0% | |
| CATCTGTTGTGGTGGTTGCA+GGG | + | chr2_4:51588944-51588963 | Msa0333640:CDS | 50.0% | |
| TTGTGGTGGTTGCAGGGATA+AGG | + | chr2_4:51588950-51588969 | Msa0333640:CDS | 50.0% | |
| ATCAGTGTCTGTGTCGTGTC+CGG | + | chr2_4:51589167-51589186 | Msa0333640:intron | 50.0% | |
| CGAAATACGGATACGGACAC+CGG | - | chr2_4:51589189-51589208 | None:intergenic | 50.0% | |
| GAGCAGGTCCTTCATCTTCA+TGG | + | chr2_4:51589847-51589866 | Msa0333640:intron | 50.0% | |
| TTGGCATGTTTCTTGCCACG+TGG | + | chr2_4:51590486-51590505 | Msa0333640:intron | 50.0% | |
| ACTGTGCAACTTTGGCCATG+TGG | + | chr2_4:51590518-51590537 | Msa0333640:intron | 50.0% | |
| GCCCCACTTCTGATCTGATT+TGG | - | chr2_4:51591020-51591039 | None:intergenic | 50.0% | |
| AACCTTTGATGAGTGTGCGC+AGG | + | chr2_4:51591300-51591319 | Msa0333640:intron | 50.0% | |
| AACCTGCGCACACTCATCAA+AGG | - | chr2_4:51591305-51591324 | None:intergenic | 50.0% | |
| GCTTAGCGCGACACAATGAA+CGG | + | chr2_4:51591372-51591391 | Msa0333640:CDS | 50.0% | |
| ACTGCTGGAACTTGCACTGA+AGG | + | chr2_4:51591407-51591426 | Msa0333640:CDS | 50.0% | |
| GGAACTTGCACTGAAGGAAG+CGG | + | chr2_4:51591413-51591432 | Msa0333640:CDS | 50.0% | |
| GCATCTGTTGTGGTGGTTGC+AGG | + | chr2_4:51588943-51588962 | Msa0333640:CDS | 55.0% | |
| TGGTTGCAGGGATAAGGCAG+AGG | + | chr2_4:51588956-51588975 | Msa0333640:CDS | 55.0% | |
| GGACCTGCTCTCACACTCTT+TGG | - | chr2_4:51589837-51589856 | None:intergenic | 55.0% | |
| TTGGCATGGTTCTTGCCACG+TGG | - | chr2_4:51591001-51591020 | None:intergenic | 55.0% | |
| TGCACTGAAGGAAGCGGTAC+TGG | + | chr2_4:51591419-51591438 | Msa0333640:CDS | 55.0% | |
| CACAGTCAGCAACTGCCACG+TGG | - | chr2_4:51590504-51590523 | None:intergenic | 60.0% | |
| TTGGCCATGTGGCGATGACG+TGG | + | chr2_4:51590529-51590548 | Msa0333640:intron | 60.0% | |
| CATGCCACGTCATCGCCACA+TGG | - | chr2_4:51590536-51590555 | None:intergenic | 60.0% | |
| !! | CGGCGTCGTAAAAGCACTGC+TGG | + | chr2_4:51591392-51591411 | Msa0333640:CDS | 60.0% |
| ACTGCCATGTCAGCGCCACG+TGG | + | chr2_4:51590983-51591002 | Msa0333640:intron | 65.0% | |
| !! | CTTGCCACGTGGCGCTGACA+TGG | - | chr2_4:51590990-51591009 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 51588670 | 51591526 | 51588670 | ID=Msa0333640;Name=Msa0333640 |
| chr2_4 | mRNA | 51588670 | 51591526 | 51588670 | ID=Msa0333640-mRNA-1;Parent=Msa0333640;Name=Msa0333640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|177 |
| chr2_4 | exon | 51588670 | 51588998 | 51588670 | ID=Msa0333640-mRNA-1:exon:15415;Parent=Msa0333640-mRNA-1 |
| chr2_4 | exon | 51591322 | 51591526 | 51591322 | ID=Msa0333640-mRNA-1:exon:15416;Parent=Msa0333640-mRNA-1 |
| chr2_4 | CDS | 51588670 | 51588998 | 51588670 | ID=Msa0333640-mRNA-1:cds;Parent=Msa0333640-mRNA-1 |
| chr2_4 | CDS | 51591322 | 51591526 | 51591322 | ID=Msa0333640-mRNA-1:cds;Parent=Msa0333640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
