Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334580 | XP_039686096.1 | 84.472 | 322 | 17 | 11 | 1 | 312 | 1 | 299 | 1.32e-156 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0334580 | TF | NOZZLE |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334580 | MtrunA17_Chr2g0318721 | 84.472 | 322 | 17 | 11 | 1 | 312 | 1 | 299 | 1.21e-160 | 449 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTCACTGTTTCAGCTTA+TGG | 0.159665 | 2_4:+53008093 | Msa0334580:CDS |
| CACCAATTGTGGGAAATTTC+AGG | 0.195712 | 2_4:-53008050 | None:intergenic |
| TTATTCTGATTCTGATTGTT+AGG | 0.266258 | 2_4:-53006529 | None:intergenic |
| TGTGGGAAATTTCAGGTTCT+TGG | 0.268740 | 2_4:-53008043 | None:intergenic |
| GGTTGAGAGTGATGAAGATT+TGG | 0.342640 | 2_4:-53006655 | None:intergenic |
| GAAGGTTGAGGTTGAGGTTG+AGG | 0.345487 | 2_4:-53007492 | None:intergenic |
| AGAACAGAAGGTTGAGGTTG+AGG | 0.346254 | 2_4:-53007498 | None:intergenic |
| AGCTCTTTAGAAGGCTCAAA+AGG | 0.358727 | 2_4:-53006622 | None:intergenic |
| GGTGGTGGTAACTATGGATA+TGG | 0.361187 | 2_4:+53006568 | Msa0334580:CDS |
| AGTGTTATTGTTATTGTTGT+TGG | 0.365355 | 2_4:-53006437 | None:intergenic |
| AACCTGAAATTTCCCACAAT+TGG | 0.372059 | 2_4:+53008048 | Msa0334580:CDS |
| TCAACTCCTACACCTCTTAG+TGG | 0.420541 | 2_4:-53006238 | None:intergenic |
| ATCAGAATCAGAATAACAAC+AGG | 0.420921 | 2_4:+53006536 | Msa0334580:CDS |
| ATTGAAGAGAGCTCTTTAGA+AGG | 0.427011 | 2_4:-53006631 | None:intergenic |
| TGAGGTTGAGGTTGAGGTTG+AGG | 0.427504 | 2_4:-53007486 | None:intergenic |
| AGAAGCAGCTTCACCAATTG+TGG | 0.451010 | 2_4:-53008061 | None:intergenic |
| TCATGAACATGATGATGATT+AGG | 0.458805 | 2_4:-53007444 | None:intergenic |
| GTTGTTGGTGGTGGTAACTA+TGG | 0.459219 | 2_4:+53006562 | Msa0334580:CDS |
| GCTTGCTCAAACGTTGGTGC+TGG | 0.461104 | 2_4:+53006496 | Msa0334580:CDS |
| GAGAGGAGCTAGAAACCCTT+TGG | 0.463191 | 2_4:+53007413 | Msa0334580:CDS |
| AGGTTGTTGCTGTGCATAGG+AGG | 0.469491 | 2_4:+53007938 | Msa0334580:CDS |
| ACCTTGAGGCAAAGATCAAA+AGG | 0.476163 | 2_4:-53006676 | None:intergenic |
| GTTAGAGAAGCAGAGGATAG+AGG | 0.478278 | 2_4:+53006264 | Msa0334580:CDS |
| GAAGCAGAGGATAGAGGCAT+TGG | 0.478285 | 2_4:+53006270 | Msa0334580:CDS |
| GGTAACTATGGATATGGATC+TGG | 0.489747 | 2_4:+53006574 | Msa0334580:CDS |
| GTTGGAGCTTGCTCAAACGT+TGG | 0.497141 | 2_4:+53006490 | Msa0334580:CDS |
| TCAGAAAACACGTTTGAATG+AGG | 0.499550 | 2_4:+53007377 | Msa0334580:intron |
| AGGAGGGGAAGTTCTTCATC+AGG | 0.500625 | 2_4:+53007955 | Msa0334580:CDS |
| TCATCAAGATTGTGATGAGT+TGG | 0.506524 | 2_4:-53007531 | None:intergenic |
| AACAGGGTCGTTGTTGGTGG+TGG | 0.507033 | 2_4:+53006553 | Msa0334580:CDS |
| AATAACAACAGGGTCGTTGT+TGG | 0.507101 | 2_4:+53006547 | Msa0334580:CDS |
| TTTGAGCAAGCTCCAACAAA+AGG | 0.507919 | 2_4:-53006484 | None:intergenic |
| GCTCAAACGTTGGTGCTGGA+TGG | 0.518767 | 2_4:+53006500 | Msa0334580:CDS |
| CTAGAAACCCTTTGGAGGCA+TGG | 0.527762 | 2_4:+53007421 | Msa0334580:CDS |
| GAGGAGAGTAATGTAATGAG+AGG | 0.529842 | 2_4:+53007396 | Msa0334580:CDS |
| TGATGTTGAGGAAACTGAAA+TGG | 0.535711 | 2_4:-53006385 | None:intergenic |
| CTCACTGTTTCAGCTTATGG+TGG | 0.545279 | 2_4:+53008096 | Msa0334580:CDS |
| AACAACAGGGTCGTTGTTGG+TGG | 0.551873 | 2_4:+53006550 | Msa0334580:CDS |
| AAGTTCTTCATCAGGAGGGA+AGG | 0.555848 | 2_4:+53007963 | Msa0334580:CDS |
| TTGAACAGTTAGAGAAGCAG+AGG | 0.558284 | 2_4:+53006257 | Msa0334580:CDS |
| GATTAGGCCATGCCTCCAAA+GGG | 0.558465 | 2_4:-53007428 | None:intergenic |
| GGATAAGCAGAAAGAACAGA+AGG | 0.566886 | 2_4:-53007510 | None:intergenic |
| GCTCTTTAGAAGGCTCAAAA+GGG | 0.569253 | 2_4:-53006621 | None:intergenic |
| TGATTAGGCCATGCCTCCAA+AGG | 0.575637 | 2_4:-53007429 | None:intergenic |
| GGTTGTTGCTGTGCATAGGA+GGG | 0.577962 | 2_4:+53007939 | Msa0334580:CDS |
| ATTTGCTGTTGATGATGTTG+AGG | 0.585953 | 2_4:-53006397 | None:intergenic |
| TTGGTGAGAAAAGCTGAAGC+TGG | 0.589265 | 2_4:+53006289 | Msa0334580:CDS |
| GTTGTTGATGAGGATGATCA+AGG | 0.590020 | 2_4:-53006324 | None:intergenic |
| TTGTGTTGTAAAGTGTGTGG+AGG | 0.590206 | 2_4:+53007918 | Msa0334580:intron |
| GCAGAAAGAACAGAAGGTTG+AGG | 0.592292 | 2_4:-53007504 | None:intergenic |
| AGGAGCTAGAAACCCTTTGG+AGG | 0.592534 | 2_4:+53007416 | Msa0334580:CDS |
| AAAAGCTGTTGTTGTTGATG+AGG | 0.593088 | 2_4:-53006334 | None:intergenic |
| TGGAGGTTGTTGCTGTGCAT+AGG | 0.593913 | 2_4:+53007935 | Msa0334580:CDS |
| GTTGTTGCTGTGCATAGGAG+GGG | 0.608997 | 2_4:+53007940 | Msa0334580:CDS |
| GAAGCAGCTTCACCAATTGT+GGG | 0.613866 | 2_4:-53008060 | None:intergenic |
| GGAAACTGAAATGGCCCAGT+TGG | 0.639292 | 2_4:-53006376 | None:intergenic |
| AACTCATCACAATCTTGATG+AGG | 0.642648 | 2_4:+53007533 | Msa0334580:CDS |
| AGGGGAAGTTCTTCATCAGG+AGG | 0.645014 | 2_4:+53007958 | Msa0334580:CDS |
| GGGGAAGTTCTTCATCAGGA+GGG | 0.656793 | 2_4:+53007959 | Msa0334580:CDS |
| TCAGAATCAGAATAACAACA+GGG | 0.760807 | 2_4:+53006537 | Msa0334580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATATATTATACCTTG+AGG | - | chr2_4:53006693-53006712 | None:intergenic | 15.0% |
| !!! | TGAATAATTTGATTTTTTCT+TGG | + | chr2_4:53007026-53007045 | Msa0334580:intron | 15.0% |
| !!! | TGCAATGTTTAATTTTTTTT+TGG | + | chr2_4:53007657-53007676 | Msa0334580:intron | 15.0% |
| !! | ATTAAATTAAACATTGTATC+TGG | - | chr2_4:53007798-53007817 | None:intergenic | 15.0% |
| !!! | TTTTCAATTTTTCTAAGTTT+AGG | + | chr2_4:53007850-53007869 | Msa0334580:intron | 15.0% |
| !!! | TTTCAATTTTTCTAAGTTTA+GGG | + | chr2_4:53007851-53007870 | Msa0334580:intron | 15.0% |
| !! | TTTCTGAATTTAAAAATTGA+TGG | + | chr2_4:53007884-53007903 | Msa0334580:intron | 15.0% |
| !! | TTCTGAATTTAAAAATTGAT+GGG | + | chr2_4:53007885-53007904 | Msa0334580:intron | 15.0% |
| !! | ATAAAATATATTATACCTTG+AGG | - | chr2_4:53006693-53006712 | None:intergenic | 15.0% |
| !!! | TGAATAATTTGATTTTTTCT+TGG | + | chr2_4:53007026-53007045 | Msa0334580:intron | 15.0% |
| !!! | TGCAATGTTTAATTTTTTTT+TGG | + | chr2_4:53007657-53007676 | Msa0334580:intron | 15.0% |
| !! | ATTAAATTAAACATTGTATC+TGG | - | chr2_4:53007798-53007817 | None:intergenic | 15.0% |
| !!! | TTTTCAATTTTTCTAAGTTT+AGG | + | chr2_4:53007850-53007869 | Msa0334580:intron | 15.0% |
| !!! | TTTCAATTTTTCTAAGTTTA+GGG | + | chr2_4:53007851-53007870 | Msa0334580:intron | 15.0% |
| !! | TTTCTGAATTTAAAAATTGA+TGG | + | chr2_4:53007884-53007903 | Msa0334580:intron | 15.0% |
| !! | TTCTGAATTTAAAAATTGAT+GGG | + | chr2_4:53007885-53007904 | Msa0334580:intron | 15.0% |
| !! | ACATAAATAACAAAAAGTAG+AGG | - | chr2_4:53006998-53007017 | None:intergenic | 20.0% |
| !! | TTAACATTAATACCAACAAA+AGG | - | chr2_4:53007135-53007154 | None:intergenic | 20.0% |
| !! | TCAAAAAAAAAATCCACAAA+AGG | - | chr2_4:53007234-53007253 | None:intergenic | 20.0% |
| !! | TTAACACTAATATCAACAAA+AGG | - | chr2_4:53007265-53007284 | None:intergenic | 20.0% |
| !! | TTAGAAAAATTGAAAACACT+TGG | - | chr2_4:53007846-53007865 | None:intergenic | 20.0% |
| !! | TCTGAATTTAAAAATTGATG+GGG | + | chr2_4:53007886-53007905 | Msa0334580:intron | 20.0% |
| !!! | GATTTTTTTCATGAAAAAGA+TGG | + | chr2_4:53008006-53008025 | Msa0334580:CDS | 20.0% |
| !! | ACATAAATAACAAAAAGTAG+AGG | - | chr2_4:53006998-53007017 | None:intergenic | 20.0% |
| !! | TTAACATTAATACCAACAAA+AGG | - | chr2_4:53007135-53007154 | None:intergenic | 20.0% |
| !! | TCAAAAAAAAAATCCACAAA+AGG | - | chr2_4:53007234-53007253 | None:intergenic | 20.0% |
| !! | TTAACACTAATATCAACAAA+AGG | - | chr2_4:53007265-53007284 | None:intergenic | 20.0% |
| !! | TTAGAAAAATTGAAAACACT+TGG | - | chr2_4:53007846-53007865 | None:intergenic | 20.0% |
| !! | TCTGAATTTAAAAATTGATG+GGG | + | chr2_4:53007886-53007905 | Msa0334580:intron | 20.0% |
| !!! | GATTTTTTTCATGAAAAAGA+TGG | + | chr2_4:53008006-53008025 | Msa0334580:CDS | 20.0% |
| ! | AAAACCAAGCAAAAAACAAA+GGG | + | chr2_4:53006188-53006207 | Msa0334580:CDS | 25.0% |
| ! | AAAAACAAAGGGAGAAAAAA+TGG | + | chr2_4:53006199-53006218 | Msa0334580:CDS | 25.0% |
| !! | AGTGTTATTGTTATTGTTGT+TGG | - | chr2_4:53006440-53006459 | None:intergenic | 25.0% |
| !!! | AACAATAACACTGTTTTTGT+TGG | + | chr2_4:53006448-53006467 | Msa0334580:CDS | 25.0% |
| ! | TTATTCTGATTCTGATTGTT+AGG | - | chr2_4:53006532-53006551 | None:intergenic | 25.0% |
| ! | ACATTGATATGATTAGATGA+TGG | + | chr2_4:53006776-53006795 | Msa0334580:intron | 25.0% |
| !! | AATGTTCTTATACCTTTTGT+TGG | + | chr2_4:53007120-53007139 | Msa0334580:intron | 25.0% |
| ! | AAAACCAAGCAAAAAACAAA+GGG | + | chr2_4:53006188-53006207 | Msa0334580:CDS | 25.0% |
| ! | AAAAACAAAGGGAGAAAAAA+TGG | + | chr2_4:53006199-53006218 | Msa0334580:CDS | 25.0% |
| !! | AGTGTTATTGTTATTGTTGT+TGG | - | chr2_4:53006440-53006459 | None:intergenic | 25.0% |
| !!! | AACAATAACACTGTTTTTGT+TGG | + | chr2_4:53006448-53006467 | Msa0334580:CDS | 25.0% |
| ! | TTATTCTGATTCTGATTGTT+AGG | - | chr2_4:53006532-53006551 | None:intergenic | 25.0% |
| ! | ACATTGATATGATTAGATGA+TGG | + | chr2_4:53006776-53006795 | Msa0334580:intron | 25.0% |
| !! | AATGTTCTTATACCTTTTGT+TGG | + | chr2_4:53007120-53007139 | Msa0334580:intron | 25.0% |
| GAAAACCAAGCAAAAAACAA+AGG | + | chr2_4:53006187-53006206 | Msa0334580:CDS | 30.0% | |
| ATCAGAATCAGAATAACAAC+AGG | + | chr2_4:53006536-53006555 | Msa0334580:CDS | 30.0% | |
| TCAGAATCAGAATAACAACA+GGG | + | chr2_4:53006537-53006556 | Msa0334580:CDS | 30.0% | |
| AAAAAATCCACAAAAGGTAG+AGG | - | chr2_4:53007228-53007247 | None:intergenic | 30.0% | |
| ! | TCATGAACATGATGATGATT+AGG | - | chr2_4:53007447-53007466 | None:intergenic | 30.0% |
| ! | CATCATGTTCATGATTTTCT+TGG | + | chr2_4:53007453-53007472 | Msa0334580:CDS | 30.0% |
| ! | TTTTTGTGTTGTAAAGTGTG+TGG | + | chr2_4:53007915-53007934 | Msa0334580:intron | 30.0% |
| GAAAACCAAGCAAAAAACAA+AGG | + | chr2_4:53006187-53006206 | Msa0334580:CDS | 30.0% | |
| ATCAGAATCAGAATAACAAC+AGG | + | chr2_4:53006536-53006555 | Msa0334580:CDS | 30.0% | |
| TCAGAATCAGAATAACAACA+GGG | + | chr2_4:53006537-53006556 | Msa0334580:CDS | 30.0% | |
| AAAAAATCCACAAAAGGTAG+AGG | - | chr2_4:53007228-53007247 | None:intergenic | 30.0% | |
| ! | TCATGAACATGATGATGATT+AGG | - | chr2_4:53007447-53007466 | None:intergenic | 30.0% |
| ! | CATCATGTTCATGATTTTCT+TGG | + | chr2_4:53007453-53007472 | Msa0334580:CDS | 30.0% |
| ! | TTTTTGTGTTGTAAAGTGTG+TGG | + | chr2_4:53007915-53007934 | Msa0334580:intron | 30.0% |
| !!! | GTTTTTTGCTTGGTTTTCAG+AGG | - | chr2_4:53006185-53006204 | None:intergenic | 35.0% |
| !!! | TTCTCCCTTTGTTTTTTGCT+TGG | - | chr2_4:53006195-53006214 | None:intergenic | 35.0% |
| !!! | ACACCTCTTAGTGGTTTTTT+TGG | - | chr2_4:53006232-53006251 | None:intergenic | 35.0% |
| ! | AAAAAACCACTAAGAGGTGT+AGG | + | chr2_4:53006232-53006251 | Msa0334580:CDS | 35.0% |
| ! | AAAAGCTGTTGTTGTTGATG+AGG | - | chr2_4:53006337-53006356 | None:intergenic | 35.0% |
| !!! | CAACAACAGCTTTTGAAGTA+TGG | + | chr2_4:53006343-53006362 | Msa0334580:CDS | 35.0% |
| TGATGTTGAGGAAACTGAAA+TGG | - | chr2_4:53006388-53006407 | None:intergenic | 35.0% | |
| !! | ATTTGCTGTTGATGATGTTG+AGG | - | chr2_4:53006400-53006419 | None:intergenic | 35.0% |
| !!! | AACACTGTTTTTGTTGGTTC+TGG | + | chr2_4:53006454-53006473 | Msa0334580:CDS | 35.0% |
| ! | TCTGGTTATGTTCCTTTTGT+TGG | + | chr2_4:53006472-53006491 | Msa0334580:CDS | 35.0% |
| ATTGAAGAGAGCTCTTTAGA+AGG | - | chr2_4:53006634-53006653 | None:intergenic | 35.0% | |
| ! | TAATGTTCCTCTACCTTTTG+TGG | + | chr2_4:53007218-53007237 | Msa0334580:intron | 35.0% |
| TCAGAAAACACGTTTGAATG+AGG | + | chr2_4:53007377-53007396 | Msa0334580:intron | 35.0% | |
| ! | CATGTTCATGATTTTCTTGG+AGG | + | chr2_4:53007456-53007475 | Msa0334580:CDS | 35.0% |
| TCATCAAGATTGTGATGAGT+TGG | - | chr2_4:53007534-53007553 | None:intergenic | 35.0% | |
| AACTCATCACAATCTTGATG+AGG | + | chr2_4:53007533-53007552 | Msa0334580:CDS | 35.0% | |
| AACCTGAAATTTCCCACAAT+TGG | + | chr2_4:53008048-53008067 | Msa0334580:CDS | 35.0% | |
| !!! | GTTTTTTGCTTGGTTTTCAG+AGG | - | chr2_4:53006185-53006204 | None:intergenic | 35.0% |
| !!! | TTCTCCCTTTGTTTTTTGCT+TGG | - | chr2_4:53006195-53006214 | None:intergenic | 35.0% |
| !!! | ACACCTCTTAGTGGTTTTTT+TGG | - | chr2_4:53006232-53006251 | None:intergenic | 35.0% |
| ! | AAAAAACCACTAAGAGGTGT+AGG | + | chr2_4:53006232-53006251 | Msa0334580:CDS | 35.0% |
| ! | AAAAGCTGTTGTTGTTGATG+AGG | - | chr2_4:53006337-53006356 | None:intergenic | 35.0% |
| !!! | CAACAACAGCTTTTGAAGTA+TGG | + | chr2_4:53006343-53006362 | Msa0334580:CDS | 35.0% |
| TGATGTTGAGGAAACTGAAA+TGG | - | chr2_4:53006388-53006407 | None:intergenic | 35.0% | |
| !! | ATTTGCTGTTGATGATGTTG+AGG | - | chr2_4:53006400-53006419 | None:intergenic | 35.0% |
| !!! | AACACTGTTTTTGTTGGTTC+TGG | + | chr2_4:53006454-53006473 | Msa0334580:CDS | 35.0% |
| ! | TCTGGTTATGTTCCTTTTGT+TGG | + | chr2_4:53006472-53006491 | Msa0334580:CDS | 35.0% |
| ATTGAAGAGAGCTCTTTAGA+AGG | - | chr2_4:53006634-53006653 | None:intergenic | 35.0% | |
| ! | TAATGTTCCTCTACCTTTTG+TGG | + | chr2_4:53007218-53007237 | Msa0334580:intron | 35.0% |
| TCAGAAAACACGTTTGAATG+AGG | + | chr2_4:53007377-53007396 | Msa0334580:intron | 35.0% | |
| ! | CATGTTCATGATTTTCTTGG+AGG | + | chr2_4:53007456-53007475 | Msa0334580:CDS | 35.0% |
| TCATCAAGATTGTGATGAGT+TGG | - | chr2_4:53007534-53007553 | None:intergenic | 35.0% | |
| AACTCATCACAATCTTGATG+AGG | + | chr2_4:53007533-53007552 | Msa0334580:CDS | 35.0% | |
| AACCTGAAATTTCCCACAAT+TGG | + | chr2_4:53008048-53008067 | Msa0334580:CDS | 35.0% | |
| GCACCAAAAAAACCACTAAG+AGG | + | chr2_4:53006226-53006245 | Msa0334580:CDS | 40.0% | |
| TTGAACAGTTAGAGAAGCAG+AGG | + | chr2_4:53006257-53006276 | Msa0334580:CDS | 40.0% | |
| ! | GTTGTTGATGAGGATGATCA+AGG | - | chr2_4:53006327-53006346 | None:intergenic | 40.0% |
| ! | TATGGTGCATTTTCACCAAC+TGG | + | chr2_4:53006361-53006380 | Msa0334580:CDS | 40.0% |
| ! | ATGGTGCATTTTCACCAACT+GGG | + | chr2_4:53006362-53006381 | Msa0334580:CDS | 40.0% |
| TTTGAGCAAGCTCCAACAAA+AGG | - | chr2_4:53006487-53006506 | None:intergenic | 40.0% | |
| AATAACAACAGGGTCGTTGT+TGG | + | chr2_4:53006547-53006566 | Msa0334580:CDS | 40.0% | |
| GGTAACTATGGATATGGATC+TGG | + | chr2_4:53006574-53006593 | Msa0334580:CDS | 40.0% | |
| ! | GCTCTTTAGAAGGCTCAAAA+GGG | - | chr2_4:53006624-53006643 | None:intergenic | 40.0% |
| ! | AGCTCTTTAGAAGGCTCAAA+AGG | - | chr2_4:53006625-53006644 | None:intergenic | 40.0% |
| GGTTGAGAGTGATGAAGATT+TGG | - | chr2_4:53006658-53006677 | None:intergenic | 40.0% | |
| ! | ACCTTTTGATCTTTGCCTCA+AGG | + | chr2_4:53006675-53006694 | Msa0334580:CDS | 40.0% |
| ACCTTGAGGCAAAGATCAAA+AGG | - | chr2_4:53006679-53006698 | None:intergenic | 40.0% | |
| GAGGAGAGTAATGTAATGAG+AGG | + | chr2_4:53007396-53007415 | Msa0334580:CDS | 40.0% | |
| GGATAAGCAGAAAGAACAGA+AGG | - | chr2_4:53007513-53007532 | None:intergenic | 40.0% | |
| TTGTGTTGTAAAGTGTGTGG+AGG | + | chr2_4:53007918-53007937 | Msa0334580:intron | 40.0% | |
| ! | AGGGAAGGACAAAGTTTTCA+TGG | + | chr2_4:53007978-53007997 | Msa0334580:CDS | 40.0% |
| !! | TGTGGGAAATTTCAGGTTCT+TGG | - | chr2_4:53008046-53008065 | None:intergenic | 40.0% |
| CACCAATTGTGGGAAATTTC+AGG | - | chr2_4:53008053-53008072 | None:intergenic | 40.0% | |
| TCTCTCACTGTTTCAGCTTA+TGG | + | chr2_4:53008093-53008112 | Msa0334580:CDS | 40.0% | |
| GCACCAAAAAAACCACTAAG+AGG | + | chr2_4:53006226-53006245 | Msa0334580:CDS | 40.0% | |
| TTGAACAGTTAGAGAAGCAG+AGG | + | chr2_4:53006257-53006276 | Msa0334580:CDS | 40.0% | |
| ! | GTTGTTGATGAGGATGATCA+AGG | - | chr2_4:53006327-53006346 | None:intergenic | 40.0% |
| ! | TATGGTGCATTTTCACCAAC+TGG | + | chr2_4:53006361-53006380 | Msa0334580:CDS | 40.0% |
| ! | ATGGTGCATTTTCACCAACT+GGG | + | chr2_4:53006362-53006381 | Msa0334580:CDS | 40.0% |
| TTTGAGCAAGCTCCAACAAA+AGG | - | chr2_4:53006487-53006506 | None:intergenic | 40.0% | |
| AATAACAACAGGGTCGTTGT+TGG | + | chr2_4:53006547-53006566 | Msa0334580:CDS | 40.0% | |
| GGTAACTATGGATATGGATC+TGG | + | chr2_4:53006574-53006593 | Msa0334580:CDS | 40.0% | |
| ! | GCTCTTTAGAAGGCTCAAAA+GGG | - | chr2_4:53006624-53006643 | None:intergenic | 40.0% |
| ! | AGCTCTTTAGAAGGCTCAAA+AGG | - | chr2_4:53006625-53006644 | None:intergenic | 40.0% |
| GGTTGAGAGTGATGAAGATT+TGG | - | chr2_4:53006658-53006677 | None:intergenic | 40.0% | |
| ! | ACCTTTTGATCTTTGCCTCA+AGG | + | chr2_4:53006675-53006694 | Msa0334580:CDS | 40.0% |
| ACCTTGAGGCAAAGATCAAA+AGG | - | chr2_4:53006679-53006698 | None:intergenic | 40.0% | |
| GAGGAGAGTAATGTAATGAG+AGG | + | chr2_4:53007396-53007415 | Msa0334580:CDS | 40.0% | |
| GGATAAGCAGAAAGAACAGA+AGG | - | chr2_4:53007513-53007532 | None:intergenic | 40.0% | |
| TTGTGTTGTAAAGTGTGTGG+AGG | + | chr2_4:53007918-53007937 | Msa0334580:intron | 40.0% | |
| ! | AGGGAAGGACAAAGTTTTCA+TGG | + | chr2_4:53007978-53007997 | Msa0334580:CDS | 40.0% |
| !! | TGTGGGAAATTTCAGGTTCT+TGG | - | chr2_4:53008046-53008065 | None:intergenic | 40.0% |
| CACCAATTGTGGGAAATTTC+AGG | - | chr2_4:53008053-53008072 | None:intergenic | 40.0% | |
| TCTCTCACTGTTTCAGCTTA+TGG | + | chr2_4:53008093-53008112 | Msa0334580:CDS | 40.0% | |
| TCAACTCCTACACCTCTTAG+TGG | - | chr2_4:53006241-53006260 | None:intergenic | 45.0% | |
| GTTAGAGAAGCAGAGGATAG+AGG | + | chr2_4:53006264-53006283 | Msa0334580:CDS | 45.0% | |
| TTGGTGAGAAAAGCTGAAGC+TGG | + | chr2_4:53006289-53006308 | Msa0334580:CDS | 45.0% | |
| !! | GTTGTTGGTGGTGGTAACTA+TGG | + | chr2_4:53006562-53006581 | Msa0334580:CDS | 45.0% |
| ! | GGTGGTGGTAACTATGGATA+TGG | + | chr2_4:53006568-53006587 | Msa0334580:CDS | 45.0% |
| AGAACAGAAGGTTGAGGTTG+AGG | - | chr2_4:53007501-53007520 | None:intergenic | 45.0% | |
| GCAGAAAGAACAGAAGGTTG+AGG | - | chr2_4:53007507-53007526 | None:intergenic | 45.0% | |
| AAGTTCTTCATCAGGAGGGA+AGG | + | chr2_4:53007963-53007982 | Msa0334580:CDS | 45.0% | |
| GAAGCAGCTTCACCAATTGT+GGG | - | chr2_4:53008063-53008082 | None:intergenic | 45.0% | |
| AGAAGCAGCTTCACCAATTG+TGG | - | chr2_4:53008064-53008083 | None:intergenic | 45.0% | |
| CTCACTGTTTCAGCTTATGG+TGG | + | chr2_4:53008096-53008115 | Msa0334580:CDS | 45.0% | |
| TCAACTCCTACACCTCTTAG+TGG | - | chr2_4:53006241-53006260 | None:intergenic | 45.0% | |
| GTTAGAGAAGCAGAGGATAG+AGG | + | chr2_4:53006264-53006283 | Msa0334580:CDS | 45.0% | |
| TTGGTGAGAAAAGCTGAAGC+TGG | + | chr2_4:53006289-53006308 | Msa0334580:CDS | 45.0% | |
| !! | GTTGTTGGTGGTGGTAACTA+TGG | + | chr2_4:53006562-53006581 | Msa0334580:CDS | 45.0% |
| ! | GGTGGTGGTAACTATGGATA+TGG | + | chr2_4:53006568-53006587 | Msa0334580:CDS | 45.0% |
| AGAACAGAAGGTTGAGGTTG+AGG | - | chr2_4:53007501-53007520 | None:intergenic | 45.0% | |
| GCAGAAAGAACAGAAGGTTG+AGG | - | chr2_4:53007507-53007526 | None:intergenic | 45.0% | |
| AAGTTCTTCATCAGGAGGGA+AGG | + | chr2_4:53007963-53007982 | Msa0334580:CDS | 45.0% | |
| GAAGCAGCTTCACCAATTGT+GGG | - | chr2_4:53008063-53008082 | None:intergenic | 45.0% | |
| AGAAGCAGCTTCACCAATTG+TGG | - | chr2_4:53008064-53008083 | None:intergenic | 45.0% | |
| CTCACTGTTTCAGCTTATGG+TGG | + | chr2_4:53008096-53008115 | Msa0334580:CDS | 45.0% | |
| !! | TTAAATTAAATAATTAGATA+TGG | - | chr2_4:53007721-53007740 | None:intergenic | 5.0% |
| !! | TTAAATTAAATAATTAGATA+TGG | - | chr2_4:53007721-53007740 | None:intergenic | 5.0% |
| !! | TGCTTGGTTTTCAGAGGCAG+AGG | - | chr2_4:53006179-53006198 | None:intergenic | 50.0% |
| ! | GAAGCAGAGGATAGAGGCAT+TGG | + | chr2_4:53006270-53006289 | Msa0334580:CDS | 50.0% |
| GGAAACTGAAATGGCCCAGT+TGG | - | chr2_4:53006379-53006398 | None:intergenic | 50.0% | |
| ! | GTTGGAGCTTGCTCAAACGT+TGG | + | chr2_4:53006490-53006509 | Msa0334580:CDS | 50.0% |
| AACAACAGGGTCGTTGTTGG+TGG | + | chr2_4:53006550-53006569 | Msa0334580:CDS | 50.0% | |
| GAGAGGAGCTAGAAACCCTT+TGG | + | chr2_4:53007413-53007432 | Msa0334580:CDS | 50.0% | |
| AGGAGCTAGAAACCCTTTGG+AGG | + | chr2_4:53007416-53007435 | Msa0334580:CDS | 50.0% | |
| ! | CTAGAAACCCTTTGGAGGCA+TGG | + | chr2_4:53007421-53007440 | Msa0334580:CDS | 50.0% |
| GATTAGGCCATGCCTCCAAA+GGG | - | chr2_4:53007431-53007450 | None:intergenic | 50.0% | |
| TGATTAGGCCATGCCTCCAA+AGG | - | chr2_4:53007432-53007451 | None:intergenic | 50.0% | |
| TGAGGTTGAGGTTGAGGTTG+AGG | - | chr2_4:53007489-53007508 | None:intergenic | 50.0% | |
| GAAGGTTGAGGTTGAGGTTG+AGG | - | chr2_4:53007495-53007514 | None:intergenic | 50.0% | |
| TGGAGGTTGTTGCTGTGCAT+AGG | + | chr2_4:53007935-53007954 | Msa0334580:CDS | 50.0% | |
| AGGTTGTTGCTGTGCATAGG+AGG | + | chr2_4:53007938-53007957 | Msa0334580:CDS | 50.0% | |
| GGTTGTTGCTGTGCATAGGA+GGG | + | chr2_4:53007939-53007958 | Msa0334580:CDS | 50.0% | |
| GTTGTTGCTGTGCATAGGAG+GGG | + | chr2_4:53007940-53007959 | Msa0334580:CDS | 50.0% | |
| AGGAGGGGAAGTTCTTCATC+AGG | + | chr2_4:53007955-53007974 | Msa0334580:CDS | 50.0% | |
| AGGGGAAGTTCTTCATCAGG+AGG | + | chr2_4:53007958-53007977 | Msa0334580:CDS | 50.0% | |
| GGGGAAGTTCTTCATCAGGA+GGG | + | chr2_4:53007959-53007978 | Msa0334580:CDS | 50.0% | |
| !! | TGCTTGGTTTTCAGAGGCAG+AGG | - | chr2_4:53006179-53006198 | None:intergenic | 50.0% |
| ! | GAAGCAGAGGATAGAGGCAT+TGG | + | chr2_4:53006270-53006289 | Msa0334580:CDS | 50.0% |
| GGAAACTGAAATGGCCCAGT+TGG | - | chr2_4:53006379-53006398 | None:intergenic | 50.0% | |
| ! | GTTGGAGCTTGCTCAAACGT+TGG | + | chr2_4:53006490-53006509 | Msa0334580:CDS | 50.0% |
| AACAACAGGGTCGTTGTTGG+TGG | + | chr2_4:53006550-53006569 | Msa0334580:CDS | 50.0% | |
| GAGAGGAGCTAGAAACCCTT+TGG | + | chr2_4:53007413-53007432 | Msa0334580:CDS | 50.0% | |
| AGGAGCTAGAAACCCTTTGG+AGG | + | chr2_4:53007416-53007435 | Msa0334580:CDS | 50.0% | |
| ! | CTAGAAACCCTTTGGAGGCA+TGG | + | chr2_4:53007421-53007440 | Msa0334580:CDS | 50.0% |
| GATTAGGCCATGCCTCCAAA+GGG | - | chr2_4:53007431-53007450 | None:intergenic | 50.0% | |
| TGATTAGGCCATGCCTCCAA+AGG | - | chr2_4:53007432-53007451 | None:intergenic | 50.0% | |
| TGAGGTTGAGGTTGAGGTTG+AGG | - | chr2_4:53007489-53007508 | None:intergenic | 50.0% | |
| GAAGGTTGAGGTTGAGGTTG+AGG | - | chr2_4:53007495-53007514 | None:intergenic | 50.0% | |
| TGGAGGTTGTTGCTGTGCAT+AGG | + | chr2_4:53007935-53007954 | Msa0334580:CDS | 50.0% | |
| AGGTTGTTGCTGTGCATAGG+AGG | + | chr2_4:53007938-53007957 | Msa0334580:CDS | 50.0% | |
| GGTTGTTGCTGTGCATAGGA+GGG | + | chr2_4:53007939-53007958 | Msa0334580:CDS | 50.0% | |
| GTTGTTGCTGTGCATAGGAG+GGG | + | chr2_4:53007940-53007959 | Msa0334580:CDS | 50.0% | |
| AGGAGGGGAAGTTCTTCATC+AGG | + | chr2_4:53007955-53007974 | Msa0334580:CDS | 50.0% | |
| AGGGGAAGTTCTTCATCAGG+AGG | + | chr2_4:53007958-53007977 | Msa0334580:CDS | 50.0% | |
| GGGGAAGTTCTTCATCAGGA+GGG | + | chr2_4:53007959-53007978 | Msa0334580:CDS | 50.0% | |
| GCTTGCTCAAACGTTGGTGC+TGG | + | chr2_4:53006496-53006515 | Msa0334580:CDS | 55.0% | |
| !! | GCTCAAACGTTGGTGCTGGA+TGG | + | chr2_4:53006500-53006519 | Msa0334580:CDS | 55.0% |
| ! | AACAGGGTCGTTGTTGGTGG+TGG | + | chr2_4:53006553-53006572 | Msa0334580:CDS | 55.0% |
| GCTTGCTCAAACGTTGGTGC+TGG | + | chr2_4:53006496-53006515 | Msa0334580:CDS | 55.0% | |
| !! | GCTCAAACGTTGGTGCTGGA+TGG | + | chr2_4:53006500-53006519 | Msa0334580:CDS | 55.0% |
| ! | AACAGGGTCGTTGTTGGTGG+TGG | + | chr2_4:53006553-53006572 | Msa0334580:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 53006172 | 53008170 | 53006172 | ID=Msa0334580;Name=Msa0334580 |
| chr2_4 | mRNA | 53006172 | 53008170 | 53006172 | ID=Msa0334580-mRNA-1;Parent=Msa0334580;Name=Msa0334580-mRNA-1;_AED=0.01;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|312 |
| chr2_4 | exon | 53006172 | 53006696 | 53006172 | ID=Msa0334580-mRNA-1:exon:16069;Parent=Msa0334580-mRNA-1 |
| chr2_4 | exon | 53007381 | 53007554 | 53007381 | ID=Msa0334580-mRNA-1:exon:16070;Parent=Msa0334580-mRNA-1 |
| chr2_4 | exon | 53007931 | 53008170 | 53007931 | ID=Msa0334580-mRNA-1:exon:16071;Parent=Msa0334580-mRNA-1 |
| chr2_4 | CDS | 53006172 | 53006696 | 53006172 | ID=Msa0334580-mRNA-1:cds;Parent=Msa0334580-mRNA-1 |
| chr2_4 | CDS | 53007381 | 53007554 | 53007381 | ID=Msa0334580-mRNA-1:cds;Parent=Msa0334580-mRNA-1 |
| chr2_4 | CDS | 53007931 | 53008170 | 53007931 | ID=Msa0334580-mRNA-1:cds;Parent=Msa0334580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
