Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335440 | XP_013464832.1 | 90.411 | 365 | 28 | 2 | 4 | 367 | 6 | 364 | 0.0 | 651 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335440 | sp|A3AWH5|MOF1_ORYSJ | 69.014 | 71 | 22 | 0 | 86 | 156 | 13 | 83 | 1.56e-27 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0335440 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335440 | MtrunA17_Chr2g0320231 | 90.411 | 365 | 28 | 2 | 4 | 367 | 6 | 364 | 0.0 | 651 |
| Msa0335440 | MtrunA17_Chr8g0379121 | 61.111 | 144 | 48 | 3 | 30 | 171 | 48 | 185 | 1.26e-43 | 156 |
| Msa0335440 | MtrunA17_Chr7g0243081 | 58.015 | 131 | 46 | 2 | 30 | 160 | 15 | 136 | 6.34e-41 | 147 |
| Msa0335440 | MtrunA17_Chr2g0283951 | 57.971 | 138 | 42 | 4 | 33 | 165 | 37 | 163 | 4.21e-38 | 140 |
| Msa0335440 | MtrunA17_Chr1g0162931 | 63.636 | 88 | 27 | 1 | 82 | 169 | 5 | 87 | 1.58e-31 | 120 |
| Msa0335440 | MtrunA17_Chr1g0210911 | 59.783 | 92 | 34 | 2 | 81 | 169 | 8 | 99 | 3.70e-30 | 118 |
| Msa0335440 | MtrunA17_Chr2g0288601 | 64.474 | 76 | 27 | 0 | 71 | 146 | 47 | 122 | 4.45e-30 | 112 |
| Msa0335440 | MtrunA17_Chr3g0095611 | 55.696 | 79 | 29 | 1 | 73 | 151 | 3 | 75 | 6.64e-23 | 95.5 |
| Msa0335440 | MtrunA17_Chr1g0154261 | 64.789 | 71 | 22 | 2 | 87 | 156 | 120 | 188 | 3.06e-21 | 92.8 |
| Msa0335440 | MtrunA17_Chr6g0479431 | 68.966 | 58 | 18 | 0 | 94 | 151 | 201 | 258 | 2.42e-20 | 91.3 |
| Msa0335440 | MtrunA17_Chr5g0410741 | 56.962 | 79 | 29 | 1 | 94 | 167 | 218 | 296 | 4.25e-20 | 90.9 |
| Msa0335440 | MtrunA17_Chr3g0109981 | 68.966 | 58 | 18 | 0 | 94 | 151 | 273 | 330 | 7.39e-20 | 90.9 |
| Msa0335440 | MtrunA17_Chr8g0366281 | 55.696 | 79 | 30 | 1 | 94 | 167 | 172 | 250 | 8.43e-20 | 89.7 |
| Msa0335440 | MtrunA17_Chr7g0261911 | 67.857 | 56 | 18 | 0 | 96 | 151 | 263 | 318 | 2.97e-19 | 89.0 |
| Msa0335440 | MtrunA17_Chr1g0190301 | 61.194 | 67 | 25 | 1 | 85 | 151 | 166 | 231 | 8.13e-19 | 87.0 |
| Msa0335440 | MtrunA17_Chr7g0274471 | 66.071 | 56 | 19 | 0 | 96 | 151 | 219 | 274 | 9.72e-19 | 87.4 |
| Msa0335440 | MtrunA17_Chr7g0258551 | 56.164 | 73 | 31 | 1 | 91 | 162 | 208 | 280 | 2.40e-17 | 82.8 |
| Msa0335440 | MtrunA17_Chr2g0321461 | 53.333 | 75 | 33 | 2 | 96 | 168 | 46 | 120 | 2.96e-17 | 82.4 |
| Msa0335440 | MtrunA17_Chr6g0461641 | 62.264 | 53 | 20 | 0 | 96 | 148 | 43 | 95 | 8.44e-17 | 81.3 |
| Msa0335440 | MtrunA17_Chr5g0409731 | 60.345 | 58 | 23 | 0 | 91 | 148 | 21 | 78 | 9.14e-17 | 80.1 |
| Msa0335440 | MtrunA17_Chr1g0175091 | 58.209 | 67 | 27 | 1 | 97 | 162 | 260 | 326 | 1.86e-16 | 80.5 |
| Msa0335440 | MtrunA17_Chr7g0254981 | 65.000 | 60 | 20 | 1 | 97 | 155 | 52 | 111 | 2.20e-16 | 78.6 |
| Msa0335440 | MtrunA17_Chr1g0175081 | 54.839 | 62 | 27 | 1 | 97 | 157 | 24 | 85 | 4.77e-16 | 73.2 |
| Msa0335440 | MtrunA17_Chr1g0197171 | 60.714 | 56 | 22 | 0 | 96 | 151 | 45 | 100 | 6.58e-16 | 77.4 |
| Msa0335440 | MtrunA17_Chr2g0290991 | 60.714 | 56 | 22 | 0 | 96 | 151 | 40 | 95 | 1.04e-15 | 77.0 |
| Msa0335440 | MtrunA17_Chr2g0291021 | 65.455 | 55 | 19 | 0 | 97 | 151 | 51 | 105 | 1.91e-15 | 76.6 |
| Msa0335440 | MtrunA17_Chr5g0417521 | 52.830 | 53 | 25 | 0 | 96 | 148 | 16 | 68 | 4.41e-15 | 75.9 |
| Msa0335440 | MtrunA17_Chr8g0356501 | 55.357 | 56 | 25 | 0 | 96 | 151 | 38 | 93 | 1.41e-14 | 74.3 |
| Msa0335440 | MtrunA17_Chr2g0310011 | 55.357 | 56 | 25 | 0 | 96 | 151 | 36 | 91 | 3.53e-14 | 73.2 |
| Msa0335440 | MtrunA17_Chr4g0042451 | 51.786 | 56 | 27 | 0 | 96 | 151 | 18 | 73 | 1.58e-13 | 70.9 |
| Msa0335440 | MtrunA17_Chr1g0175071 | 58.491 | 53 | 22 | 0 | 97 | 149 | 179 | 231 | 1.82e-13 | 70.5 |
| Msa0335440 | MtrunA17_Chr7g0242521 | 61.017 | 59 | 20 | 1 | 97 | 152 | 15 | 73 | 2.46e-13 | 68.9 |
| Msa0335440 | MtrunA17_Chr7g0258531 | 58.491 | 53 | 22 | 0 | 97 | 149 | 215 | 267 | 8.91e-12 | 65.9 |
| Msa0335440 | MtrunA17_Chr4g0009901 | 43.243 | 74 | 38 | 2 | 78 | 148 | 148 | 220 | 1.21e-11 | 64.7 |
| Msa0335440 | MtrunA17_Chr4g0062921 | 39.130 | 92 | 48 | 1 | 65 | 148 | 197 | 288 | 3.72e-11 | 64.3 |
| Msa0335440 | MtrunA17_Chr2g0304841 | 52.727 | 55 | 25 | 1 | 94 | 148 | 212 | 265 | 3.86e-11 | 64.7 |
| Msa0335440 | MtrunA17_Chr4g0031961 | 53.125 | 64 | 29 | 1 | 85 | 148 | 121 | 183 | 4.08e-11 | 63.5 |
| Msa0335440 | MtrunA17_Chr4g0045361 | 45.455 | 66 | 36 | 0 | 83 | 148 | 262 | 327 | 4.15e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335440 | AT2G38300.1 | 73.256 | 86 | 23 | 0 | 75 | 160 | 34 | 119 | 1.56e-37 | 138 |
| Msa0335440 | AT2G42660.1 | 68.182 | 88 | 28 | 0 | 87 | 174 | 42 | 129 | 1.90e-34 | 128 |
| Msa0335440 | AT2G40260.1 | 75.325 | 77 | 19 | 0 | 78 | 154 | 65 | 141 | 7.36e-33 | 127 |
| Msa0335440 | AT4G04605.1 | 76.056 | 71 | 17 | 0 | 87 | 157 | 6 | 76 | 6.23e-31 | 117 |
| Msa0335440 | AT2G02060.2 | 69.231 | 78 | 22 | 1 | 71 | 148 | 7 | 82 | 1.16e-28 | 112 |
| Msa0335440 | AT2G02060.1 | 69.231 | 78 | 22 | 1 | 71 | 148 | 7 | 82 | 1.16e-28 | 112 |
| Msa0335440 | AT1G14600.1 | 67.606 | 71 | 23 | 0 | 87 | 157 | 15 | 85 | 1.61e-27 | 109 |
| Msa0335440 | AT4G04555.1 | 61.644 | 73 | 28 | 0 | 83 | 155 | 2 | 74 | 9.29e-25 | 97.8 |
| Msa0335440 | AT4G04580.1 | 60.870 | 69 | 27 | 0 | 87 | 155 | 6 | 74 | 2.21e-23 | 95.9 |
| Msa0335440 | AT5G42630.2 | 65.079 | 63 | 22 | 0 | 94 | 156 | 104 | 166 | 1.01e-21 | 92.8 |
| Msa0335440 | AT5G42630.1 | 65.079 | 63 | 22 | 0 | 94 | 156 | 104 | 166 | 1.72e-21 | 93.6 |
| Msa0335440 | AT1G32240.2 | 56.962 | 79 | 29 | 1 | 94 | 167 | 212 | 290 | 2.78e-20 | 91.7 |
| Msa0335440 | AT1G32240.1 | 56.962 | 79 | 29 | 1 | 94 | 167 | 212 | 290 | 3.83e-20 | 91.3 |
| Msa0335440 | AT4G17695.1 | 62.319 | 69 | 24 | 1 | 86 | 154 | 157 | 223 | 4.90e-20 | 90.1 |
| Msa0335440 | AT5G16560.1 | 68.966 | 58 | 18 | 0 | 94 | 151 | 218 | 275 | 7.43e-20 | 90.9 |
| Msa0335440 | AT5G29000.4 | 53.947 | 76 | 33 | 1 | 76 | 151 | 214 | 287 | 1.41e-17 | 83.2 |
| Msa0335440 | AT4G28610.1 | 48.276 | 87 | 42 | 2 | 97 | 180 | 227 | 313 | 1.45e-17 | 84.0 |
| Msa0335440 | AT5G29000.1 | 65.455 | 55 | 19 | 0 | 97 | 151 | 190 | 244 | 2.01e-17 | 83.2 |
| Msa0335440 | AT5G29000.3 | 65.455 | 55 | 19 | 0 | 97 | 151 | 190 | 244 | 2.01e-17 | 83.2 |
| Msa0335440 | AT3G04450.3 | 61.818 | 55 | 21 | 0 | 97 | 151 | 240 | 294 | 2.07e-17 | 82.4 |
| Msa0335440 | AT5G29000.2 | 53.947 | 76 | 33 | 1 | 76 | 151 | 214 | 287 | 2.48e-17 | 83.2 |
| Msa0335440 | AT5G45580.1 | 60.345 | 58 | 23 | 0 | 91 | 148 | 3 | 60 | 3.21e-17 | 81.3 |
| Msa0335440 | AT3G04450.4 | 61.818 | 55 | 21 | 0 | 97 | 151 | 200 | 254 | 3.32e-17 | 82.8 |
| Msa0335440 | AT3G04450.2 | 61.818 | 55 | 21 | 0 | 97 | 151 | 200 | 254 | 3.32e-17 | 82.8 |
| Msa0335440 | AT3G04450.1 | 61.818 | 55 | 21 | 0 | 97 | 151 | 240 | 294 | 3.53e-17 | 83.2 |
| Msa0335440 | AT5G45580.2 | 60.345 | 58 | 23 | 0 | 91 | 148 | 19 | 76 | 3.89e-17 | 81.3 |
| Msa0335440 | AT5G18240.2 | 48.276 | 87 | 42 | 2 | 80 | 165 | 30 | 114 | 8.60e-17 | 81.6 |
| Msa0335440 | AT5G18240.3 | 48.276 | 87 | 42 | 2 | 80 | 165 | 30 | 114 | 8.60e-17 | 81.6 |
| Msa0335440 | AT5G18240.5 | 48.276 | 87 | 42 | 2 | 80 | 165 | 30 | 114 | 1.20e-16 | 81.3 |
| Msa0335440 | AT5G18240.1 | 48.276 | 87 | 42 | 2 | 80 | 165 | 30 | 114 | 1.21e-16 | 81.3 |
| Msa0335440 | AT5G18240.4 | 48.276 | 87 | 42 | 2 | 80 | 165 | 30 | 114 | 1.21e-16 | 81.3 |
| Msa0335440 | AT3G13040.3 | 67.273 | 55 | 18 | 0 | 97 | 151 | 243 | 297 | 1.74e-16 | 80.9 |
| Msa0335440 | AT3G13040.1 | 67.273 | 55 | 18 | 0 | 97 | 151 | 243 | 297 | 1.74e-16 | 80.9 |
| Msa0335440 | AT3G13040.2 | 67.273 | 55 | 18 | 0 | 97 | 151 | 243 | 297 | 1.74e-16 | 80.9 |
| Msa0335440 | AT2G06020.1 | 42.708 | 96 | 52 | 1 | 78 | 170 | 66 | 161 | 3.08e-16 | 79.0 |
| Msa0335440 | AT3G12730.1 | 38.017 | 121 | 65 | 3 | 96 | 216 | 24 | 134 | 6.14e-16 | 77.0 |
| Msa0335440 | AT3G04030.1 | 55.932 | 59 | 25 | 1 | 96 | 153 | 46 | 104 | 7.14e-16 | 79.0 |
| Msa0335440 | AT3G04030.3 | 55.932 | 59 | 25 | 1 | 96 | 153 | 46 | 104 | 8.33e-16 | 78.6 |
| Msa0335440 | AT2G01060.1 | 46.939 | 98 | 39 | 2 | 97 | 181 | 17 | 114 | 9.88e-16 | 77.4 |
| Msa0335440 | AT5G06800.3 | 58.333 | 60 | 24 | 1 | 97 | 155 | 194 | 253 | 4.86e-15 | 75.1 |
| Msa0335440 | AT2G20400.2 | 63.636 | 55 | 20 | 0 | 97 | 151 | 233 | 287 | 5.33e-15 | 76.3 |
| Msa0335440 | AT2G20400.1 | 63.636 | 55 | 20 | 0 | 97 | 151 | 233 | 287 | 5.46e-15 | 76.3 |
| Msa0335440 | AT4G13640.1 | 56.604 | 53 | 23 | 0 | 96 | 148 | 38 | 90 | 1.45e-14 | 73.9 |
| Msa0335440 | AT4G13640.2 | 56.604 | 53 | 23 | 0 | 96 | 148 | 38 | 90 | 1.46e-14 | 73.9 |
| Msa0335440 | AT3G24120.1 | 56.604 | 53 | 23 | 0 | 96 | 148 | 42 | 94 | 1.50e-14 | 73.9 |
| Msa0335440 | AT3G24120.2 | 56.604 | 53 | 23 | 0 | 96 | 148 | 42 | 94 | 1.52e-14 | 73.9 |
| Msa0335440 | AT5G06800.1 | 58.333 | 60 | 24 | 1 | 97 | 155 | 194 | 253 | 2.35e-14 | 74.3 |
| Msa0335440 | AT5G06800.2 | 58.333 | 60 | 24 | 1 | 97 | 155 | 194 | 253 | 2.37e-14 | 74.3 |
| Msa0335440 | AT1G79430.2 | 55.357 | 56 | 25 | 0 | 96 | 151 | 35 | 90 | 2.48e-14 | 73.9 |
| Msa0335440 | AT1G69580.1 | 54.717 | 53 | 24 | 0 | 96 | 148 | 35 | 87 | 1.25e-13 | 71.6 |
| Msa0335440 | AT1G69580.2 | 54.717 | 53 | 24 | 0 | 96 | 148 | 35 | 87 | 1.33e-13 | 71.6 |
| Msa0335440 | AT3G04030.2 | 54.237 | 59 | 25 | 2 | 96 | 153 | 46 | 103 | 2.09e-13 | 71.2 |
| Msa0335440 | AT5G59570.2 | 57.143 | 56 | 23 | 1 | 93 | 148 | 139 | 193 | 1.81e-11 | 64.7 |
| Msa0335440 | AT5G59570.1 | 57.143 | 56 | 23 | 1 | 93 | 148 | 139 | 193 | 1.81e-11 | 64.7 |
| Msa0335440 | AT2G03500.1 | 50.746 | 67 | 31 | 1 | 82 | 148 | 222 | 286 | 4.55e-11 | 64.3 |
| Msa0335440 | AT3G62670.1 | 50.000 | 60 | 26 | 1 | 93 | 148 | 209 | 268 | 5.82e-11 | 63.9 |
| Msa0335440 | AT5G05090.1 | 52.000 | 75 | 33 | 3 | 75 | 148 | 61 | 133 | 9.56e-11 | 62.4 |
Find 83 sgRNAs with CRISPR-Local
Find 438 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATGTTAGTTAAATATT+TGG | 0.122537 | 2_4:+54536714 | None:intergenic |
| TTCACTGAGTACACAATATT+TGG | 0.169202 | 2_4:-54534173 | Msa0335440:CDS |
| GCACAAGGTTTAATAAATTT+TGG | 0.175400 | 2_4:-54536812 | Msa0335440:five_prime_UTR |
| TTTATAAACAAGTATCTTCT+AGG | 0.205989 | 2_4:-54536911 | Msa0335440:five_prime_UTR |
| AATATTTAACTAACATTTCT+TGG | 0.211443 | 2_4:-54536711 | Msa0335440:five_prime_UTR |
| GAAATTTGAACATAAATTAA+TGG | 0.244268 | 2_4:-54536600 | Msa0335440:exon |
| CTTACTTGGCTAGACCTAAT+AGG | 0.308735 | 2_4:+54534314 | None:intergenic |
| AAATTTGAACATAAATTAAT+GGG | 0.309507 | 2_4:-54536599 | Msa0335440:exon |
| GAAATGTTAGTTAAATATTT+GGG | 0.310512 | 2_4:+54536715 | None:intergenic |
| GATACTTGTTTATAAAAGTA+AGG | 0.348817 | 2_4:+54536918 | None:intergenic |
| GCAAGGAACGCATCACATTA+TGG | 0.355879 | 2_4:-54535047 | Msa0335440:CDS |
| CGGGTAGTAATTGACTTACT+TGG | 0.374141 | 2_4:+54534300 | None:intergenic |
| TTCACATCTATTTGATGTAA+AGG | 0.385780 | 2_4:-54534363 | Msa0335440:CDS |
| TCAAAGCTCATGACACTTCA+AGG | 0.388453 | 2_4:-54534925 | Msa0335440:intron |
| TATGATGGTTGTTTCAATAG+AGG | 0.404012 | 2_4:+54534956 | None:intergenic |
| TTGTGCTCGTTCCTAGGTCT+TGG | 0.409808 | 2_4:+54536829 | None:intergenic |
| GTCCTCTCACATTCATCAAC+TGG | 0.411306 | 2_4:+54535521 | None:intergenic |
| ACATGTGAAGAGTCATTTGC+AGG | 0.413814 | 2_4:-54535488 | Msa0335440:intron |
| GAAATAATATTGCACCTATT+AGG | 0.414171 | 2_4:-54534328 | Msa0335440:CDS |
| CATCAACTGGAGAACCAACT+TGG | 0.425229 | 2_4:+54535534 | None:intergenic |
| TGAAAGAGAAAGTATCGTAT+TGG | 0.437322 | 2_4:+54532924 | None:intergenic |
| AATAATAATTCTAGTGAAGA+AGG | 0.443311 | 2_4:-54536365 | Msa0335440:CDS |
| TTATCTCAAGGGGATGATAA+TGG | 0.444178 | 2_4:-54534266 | Msa0335440:CDS |
| CATCACATTATGGATATGTA+TGG | 0.453888 | 2_4:-54535037 | Msa0335440:CDS |
| GTGCATGCTGTTGAGAGGCT+TGG | 0.454830 | 2_4:-54536257 | Msa0335440:CDS |
| AAACCGGCCTCTTGGCAGAT+TGG | 0.455960 | 2_4:-54536524 | Msa0335440:CDS |
| TAAACCTTGTGCTCGTTCCT+AGG | 0.457719 | 2_4:+54536823 | None:intergenic |
| ACAAAAGATAAATGAAGATC+AGG | 0.462114 | 2_4:+54536278 | None:intergenic |
| TCGGAGAGAAACCGGCCTCT+TGG | 0.463390 | 2_4:-54536532 | Msa0335440:CDS |
| TTTCAACACCAAAGTGTCCT+TGG | 0.465491 | 2_4:+54535002 | None:intergenic |
| TAGCGGCATCGGAGAGAAAC+CGG | 0.466371 | 2_4:-54536540 | Msa0335440:CDS |
| AGTGAAAGTAGTAGCGGCAT+CGG | 0.474860 | 2_4:-54536551 | Msa0335440:CDS |
| AATTCTAGTGAAGAAGGAAA+AGG | 0.475804 | 2_4:-54536359 | Msa0335440:CDS |
| TTTGTAGATTTCATGAGAGT+GGG | 0.483163 | 2_4:-54534442 | Msa0335440:intron |
| CTTCCAATCTGCCAAGAGGC+CGG | 0.484626 | 2_4:+54536521 | None:intergenic |
| AATTTCTTCTTCTAATTACT+CGG | 0.485942 | 2_4:+54536617 | None:intergenic |
| CTCGACTTAGCTTTAGCTCT+AGG | 0.486541 | 2_4:+54532968 | None:intergenic |
| TTCAATGTCCAAGGACACTT+TGG | 0.487141 | 2_4:-54535010 | Msa0335440:CDS |
| CATGCTGTTGAGAGGCTTGG+AGG | 0.487742 | 2_4:-54536254 | Msa0335440:CDS |
| AATGAAGATGCCGTGGATGA+TGG | 0.491306 | 2_4:-54536476 | Msa0335440:CDS |
| CGAAAATGCCTAGGCTTCGT+TGG | 0.491348 | 2_4:-54536304 | Msa0335440:CDS |
| GAAGAGTTACAAACTTATGT+TGG | 0.491960 | 2_4:-54536668 | Msa0335440:five_prime_UTR |
| TGATACTTGAGTTTGATGTA+TGG | 0.492822 | 2_4:+54533053 | None:intergenic |
| TTCAAATTGTAGGTTTACAT+AGG | 0.495705 | 2_4:-54536861 | Msa0335440:five_prime_UTR |
| CATCACAAGAAGGGAATTTG+AGG | 0.500720 | 2_4:-54536391 | Msa0335440:CDS |
| ATAATTGATAGAACTAGAAA+AGG | 0.502223 | 2_4:+54534220 | None:intergenic |
| ATTCTAGTGAAGAAGGAAAA+GGG | 0.515576 | 2_4:-54536358 | Msa0335440:CDS |
| AGGAAAAGGGCGTGGAAGTA+CGG | 0.529396 | 2_4:-54536345 | Msa0335440:CDS |
| ATTGTGTACTCAGTGAAGAT+AGG | 0.533099 | 2_4:+54534179 | None:intergenic |
| ATACTTGTTTATAAAAGTAA+GGG | 0.547519 | 2_4:+54536919 | None:intergenic |
| GAACTAGAAAAGGTGCTCCA+TGG | 0.547694 | 2_4:+54534230 | None:intergenic |
| TCACTCTTGACATCTTTGCT+AGG | 0.549974 | 2_4:+54536569 | None:intergenic |
| GCTTTGATTTCATTATATGA+TGG | 0.554601 | 2_4:+54534941 | None:intergenic |
| TCAGGAGTCCAACGAAGCCT+AGG | 0.559435 | 2_4:+54536296 | None:intergenic |
| AATGAGATATCATCACAAGA+AGG | 0.560760 | 2_4:-54536401 | Msa0335440:CDS |
| GTACACAATATTTGGTTCTG+AGG | 0.563826 | 2_4:-54534165 | Msa0335440:intron |
| TCTTCAATAAAATTATCGTA+TGG | 0.568635 | 2_4:+54536686 | None:intergenic |
| ATTGTAGGTTTACATAGGTG+TGG | 0.574644 | 2_4:-54536856 | Msa0335440:five_prime_UTR |
| AATTTGAACATAAATTAATG+GGG | 0.579574 | 2_4:-54536598 | Msa0335440:exon |
| TATGGAAGATTCAATGTCCA+AGG | 0.583731 | 2_4:-54535019 | Msa0335440:CDS |
| TGTAGGAGCAACACCCAAGT+TGG | 0.585790 | 2_4:-54535548 | Msa0335440:intron |
| ATGAGATATCATCACAAGAA+GGG | 0.586610 | 2_4:-54536400 | Msa0335440:CDS |
| AGTGAAGAAGGAAAAGGGCG+TGG | 0.587852 | 2_4:-54536353 | Msa0335440:CDS |
| ATTTGAACATAAATTAATGG+GGG | 0.590190 | 2_4:-54536597 | Msa0335440:exon |
| CGATTTAAATGAAGATGCCG+TGG | 0.592934 | 2_4:-54536483 | Msa0335440:CDS |
| ATCAACTGGAGAACCAACTT+GGG | 0.599898 | 2_4:+54535535 | None:intergenic |
| CTTCAGATCAAGTTCAGTGT+GGG | 0.604465 | 2_4:-54534396 | Msa0335440:CDS |
| ATGTGAGGTCGAAAATGCCT+AGG | 0.605149 | 2_4:-54536313 | Msa0335440:CDS |
| TTGTTGCTTATTTCACCACA+AGG | 0.610333 | 2_4:+54536422 | None:intergenic |
| ATGCTGTTGAGAGGCTTGGA+GGG | 0.612873 | 2_4:-54536253 | Msa0335440:CDS |
| GTCAAGAGTGAAAGTAGTAG+CGG | 0.620238 | 2_4:-54536557 | Msa0335440:CDS |
| CTCCAGTTGATGAATGTGAG+AGG | 0.629384 | 2_4:-54535523 | Msa0335440:CDS |
| AAGACCTAGGAACGAGCACA+AGG | 0.631549 | 2_4:-54536827 | Msa0335440:five_prime_UTR |
| ATGATCATCTCCATCATCCA+CGG | 0.631691 | 2_4:+54536466 | None:intergenic |
| AAGCTTGATGAGTCTGGCCA+AGG | 0.633707 | 2_4:-54535189 | Msa0335440:intron |
| CTGATAAGTGAAGGCCCTTG+TGG | 0.637131 | 2_4:-54536437 | Msa0335440:CDS |
| TGTTTCAATAGAGGAGACGA+TGG | 0.646679 | 2_4:+54534965 | None:intergenic |
| GTTTCAATAGAGGAGACGAT+GGG | 0.648257 | 2_4:+54534966 | None:intergenic |
| TGTTGCTTATTTCACCACAA+GGG | 0.657001 | 2_4:+54536423 | None:intergenic |
| GGTGTGGAATTCCAAGACCT+AGG | 0.668324 | 2_4:-54536840 | Msa0335440:five_prime_UTR |
| TCTTCAGATCAAGTTCAGTG+TGG | 0.702689 | 2_4:-54534397 | Msa0335440:CDS |
| CATGTGATACTGATAAGTGA+AGG | 0.715293 | 2_4:-54536446 | Msa0335440:CDS |
| GTACGGTTAGACAATATGTG+AGG | 0.731117 | 2_4:-54536328 | Msa0335440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTGAACATAAATTAAT+GGG | - | chr2_4:54533274-54533293 | Msa0335440:intron | 10.0% |
| !!! | TTTTATTTTCAATTCATTTT+TGG | - | chr2_4:54534522-54534541 | Msa0335440:intron | 10.0% |
| !! | TATAAAAGAAAAATATGTAA+TGG | + | chr2_4:54535326-54535345 | None:intergenic | 10.0% |
| !! | TTAAAAAAAATTAGATAACT+TGG | + | chr2_4:54536312-54536331 | None:intergenic | 10.0% |
| !!! | GTTATCTAATTTTTTTTAAA+AGG | - | chr2_4:54536313-54536332 | Msa0335440:CDS | 10.0% |
| !! | TCATATATACTTAATTATAT+AGG | - | chr2_4:54536390-54536409 | Msa0335440:CDS | 10.0% |
| !! | CATATATACTTAATTATATA+GGG | - | chr2_4:54536391-54536410 | Msa0335440:CDS | 10.0% |
| !! | AAATTTGAACATAAATTAAT+GGG | - | chr2_4:54533274-54533293 | Msa0335440:intron | 10.0% |
| !!! | TTTTATTTTCAATTCATTTT+TGG | - | chr2_4:54534522-54534541 | Msa0335440:intron | 10.0% |
| !! | TATAAAAGAAAAATATGTAA+TGG | + | chr2_4:54535326-54535345 | None:intergenic | 10.0% |
| !! | TTAAAAAAAATTAGATAACT+TGG | + | chr2_4:54536312-54536331 | None:intergenic | 10.0% |
| !!! | GTTATCTAATTTTTTTTAAA+AGG | - | chr2_4:54536313-54536332 | Msa0335440:CDS | 10.0% |
| !! | TCATATATACTTAATTATAT+AGG | - | chr2_4:54536390-54536409 | Msa0335440:CDS | 10.0% |
| !! | CATATATACTTAATTATATA+GGG | - | chr2_4:54536391-54536410 | Msa0335440:CDS | 10.0% |
| !! | ATACTTGTTTATAAAAGTAA+GGG | + | chr2_4:54532957-54532976 | None:intergenic | 15.0% |
| !! | GAAATGTTAGTTAAATATTT+GGG | + | chr2_4:54533161-54533180 | None:intergenic | 15.0% |
| !! | AGAAATGTTAGTTAAATATT+TGG | + | chr2_4:54533162-54533181 | None:intergenic | 15.0% |
| !! | AATATTTAACTAACATTTCT+TGG | - | chr2_4:54533162-54533181 | Msa0335440:intron | 15.0% |
| !! | GAAATTTGAACATAAATTAA+TGG | - | chr2_4:54533273-54533292 | Msa0335440:intron | 15.0% |
| !! | AATTTGAACATAAATTAATG+GGG | - | chr2_4:54533275-54533294 | Msa0335440:intron | 15.0% |
| !!! | CTTATATAACGTTTTAATTA+TGG | - | chr2_4:54534629-54534648 | Msa0335440:intron | 15.0% |
| !! | ACATTAAATAATTAAGTGTT+GGG | + | chr2_4:54535147-54535166 | None:intergenic | 15.0% |
| !!! | AAATAGAAACATTTAAAACA+TGG | - | chr2_4:54535371-54535390 | Msa0335440:intron | 15.0% |
| !! | AAATTTCACTTAAAAACTTA+AGG | + | chr2_4:54535739-54535758 | None:intergenic | 15.0% |
| !!! | TTCATTTATTTAGTTTAGTT+AGG | + | chr2_4:54535836-54535855 | None:intergenic | 15.0% |
| !!! | GATAAAACATTTTTTTAGAA+GGG | + | chr2_4:54536019-54536038 | None:intergenic | 15.0% |
| !!! | TCAAAAGATAACATATTTTA+GGG | + | chr2_4:54536041-54536060 | None:intergenic | 15.0% |
| !!! | TTCAAAAGATAACATATTTT+AGG | + | chr2_4:54536042-54536061 | None:intergenic | 15.0% |
| !! | AAAAATGAGATATATTAACA+CGG | - | chr2_4:54536105-54536124 | Msa0335440:intron | 15.0% |
| !! | AATTTCGTTTAAAAACTTAT+AGG | + | chr2_4:54536370-54536389 | None:intergenic | 15.0% |
| !! | ATACTTGTTTATAAAAGTAA+GGG | + | chr2_4:54532957-54532976 | None:intergenic | 15.0% |
| !! | GAAATGTTAGTTAAATATTT+GGG | + | chr2_4:54533161-54533180 | None:intergenic | 15.0% |
| !! | AGAAATGTTAGTTAAATATT+TGG | + | chr2_4:54533162-54533181 | None:intergenic | 15.0% |
| !! | AATATTTAACTAACATTTCT+TGG | - | chr2_4:54533162-54533181 | Msa0335440:intron | 15.0% |
| !! | GAAATTTGAACATAAATTAA+TGG | - | chr2_4:54533273-54533292 | Msa0335440:intron | 15.0% |
| !! | AATTTGAACATAAATTAATG+GGG | - | chr2_4:54533275-54533294 | Msa0335440:intron | 15.0% |
| !!! | CTTATATAACGTTTTAATTA+TGG | - | chr2_4:54534629-54534648 | Msa0335440:intron | 15.0% |
| !! | ACATTAAATAATTAAGTGTT+GGG | + | chr2_4:54535147-54535166 | None:intergenic | 15.0% |
| !!! | AAATAGAAACATTTAAAACA+TGG | - | chr2_4:54535371-54535390 | Msa0335440:intron | 15.0% |
| !! | AAATTTCACTTAAAAACTTA+AGG | + | chr2_4:54535739-54535758 | None:intergenic | 15.0% |
| !!! | TTCATTTATTTAGTTTAGTT+AGG | + | chr2_4:54535836-54535855 | None:intergenic | 15.0% |
| !!! | GATAAAACATTTTTTTAGAA+GGG | + | chr2_4:54536019-54536038 | None:intergenic | 15.0% |
| !!! | TCAAAAGATAACATATTTTA+GGG | + | chr2_4:54536041-54536060 | None:intergenic | 15.0% |
| !!! | TTCAAAAGATAACATATTTT+AGG | + | chr2_4:54536042-54536061 | None:intergenic | 15.0% |
| !! | AAAAATGAGATATATTAACA+CGG | - | chr2_4:54536105-54536124 | Msa0335440:intron | 15.0% |
| !! | AATTTCGTTTAAAAACTTAT+AGG | + | chr2_4:54536370-54536389 | None:intergenic | 15.0% |
| !! | GATACTTGTTTATAAAAGTA+AGG | + | chr2_4:54532958-54532977 | None:intergenic | 20.0% |
| !! | TTTATAAACAAGTATCTTCT+AGG | - | chr2_4:54532962-54532981 | Msa0335440:CDS | 20.0% |
| !! | TCTTCAATAAAATTATCGTA+TGG | + | chr2_4:54533190-54533209 | None:intergenic | 20.0% |
| !! | AATTTCTTCTTCTAATTACT+CGG | + | chr2_4:54533259-54533278 | None:intergenic | 20.0% |
| !! | ATTTGAACATAAATTAATGG+GGG | - | chr2_4:54533276-54533295 | Msa0335440:intron | 20.0% |
| !! | AATAATAATTCTAGTGAAGA+AGG | - | chr2_4:54533508-54533527 | Msa0335440:intron | 20.0% |
| !! | TTATCTAATTTCATTACCTT+TGG | - | chr2_4:54533707-54533726 | Msa0335440:intron | 20.0% |
| !!! | TTTTTATAGACAAATGTTAG+TGG | - | chr2_4:54534014-54534033 | Msa0335440:intron | 20.0% |
| !!! | TTAGTGGATAATTTCTTAAT+AGG | - | chr2_4:54534030-54534049 | Msa0335440:intron | 20.0% |
| !! | TTTGGTCATCATATTATTAT+AGG | + | chr2_4:54534165-54534184 | None:intergenic | 20.0% |
| !! | AAAAATGAAAAAACAGTTGA+AGG | + | chr2_4:54534193-54534212 | None:intergenic | 20.0% |
| !! | ACAAATAGATCAAAGAATAA+GGG | + | chr2_4:54534272-54534291 | None:intergenic | 20.0% |
| !! | AACAAATAGATCAAAGAATA+AGG | + | chr2_4:54534273-54534292 | None:intergenic | 20.0% |
| !! | TAACAATATTGGATATATGT+AGG | - | chr2_4:54534308-54534327 | Msa0335440:CDS | 20.0% |
| !!! | CGTTTTAATTATGGTTTTTT+TGG | - | chr2_4:54534638-54534657 | Msa0335440:intron | 20.0% |
| !!! | TTTAATTATGGTTTTTTTGG+AGG | - | chr2_4:54534641-54534660 | Msa0335440:intron | 20.0% |
| !!! | TGATTTTGCTAACAATATTA+AGG | + | chr2_4:54534722-54534741 | None:intergenic | 20.0% |
| !! | GACATTAAATAATTAAGTGT+TGG | + | chr2_4:54535148-54535167 | None:intergenic | 20.0% |
| !! | AGTAATAATGCAGAAATATT+TGG | + | chr2_4:54535276-54535295 | None:intergenic | 20.0% |
| !! | ATAATTGATAGAACTAGAAA+AGG | + | chr2_4:54535656-54535675 | None:intergenic | 20.0% |
| !! | ATAGATATACTTGACTATAT+AGG | - | chr2_4:54535766-54535785 | Msa0335440:intron | 20.0% |
| !! | TAGATATACTTGACTATATA+GGG | - | chr2_4:54535767-54535786 | Msa0335440:intron | 20.0% |
| !!! | GGATAAAACATTTTTTTAGA+AGG | + | chr2_4:54536020-54536039 | None:intergenic | 20.0% |
| !! | AAACTTGTGCAAAATATATA+AGG | + | chr2_4:54536221-54536240 | None:intergenic | 20.0% |
| !! | TTGCAATATGTACAAATAAT+TGG | - | chr2_4:54536476-54536495 | Msa0335440:CDS | 20.0% |
| !!! | GTTTGTTTCTTTTGAATTTT+AGG | - | chr2_4:54536767-54536786 | Msa0335440:five_prime_UTR | 20.0% |
| !!! | CTCATTCAACTTTTTTAATT+GGG | + | chr2_4:54536865-54536884 | None:intergenic | 20.0% |
| !!! | TCTCATTCAACTTTTTTAAT+TGG | + | chr2_4:54536866-54536885 | None:intergenic | 20.0% |
| !! | GATACTTGTTTATAAAAGTA+AGG | + | chr2_4:54532958-54532977 | None:intergenic | 20.0% |
| !! | TTTATAAACAAGTATCTTCT+AGG | - | chr2_4:54532962-54532981 | Msa0335440:CDS | 20.0% |
| !! | TCTTCAATAAAATTATCGTA+TGG | + | chr2_4:54533190-54533209 | None:intergenic | 20.0% |
| !! | AATTTCTTCTTCTAATTACT+CGG | + | chr2_4:54533259-54533278 | None:intergenic | 20.0% |
| !! | ATTTGAACATAAATTAATGG+GGG | - | chr2_4:54533276-54533295 | Msa0335440:intron | 20.0% |
| !! | AATAATAATTCTAGTGAAGA+AGG | - | chr2_4:54533508-54533527 | Msa0335440:intron | 20.0% |
| !! | TTATCTAATTTCATTACCTT+TGG | - | chr2_4:54533707-54533726 | Msa0335440:intron | 20.0% |
| !!! | TTTTTATAGACAAATGTTAG+TGG | - | chr2_4:54534014-54534033 | Msa0335440:intron | 20.0% |
| !!! | TTAGTGGATAATTTCTTAAT+AGG | - | chr2_4:54534030-54534049 | Msa0335440:intron | 20.0% |
| !! | TTTGGTCATCATATTATTAT+AGG | + | chr2_4:54534165-54534184 | None:intergenic | 20.0% |
| !! | AAAAATGAAAAAACAGTTGA+AGG | + | chr2_4:54534193-54534212 | None:intergenic | 20.0% |
| !! | ACAAATAGATCAAAGAATAA+GGG | + | chr2_4:54534272-54534291 | None:intergenic | 20.0% |
| !! | AACAAATAGATCAAAGAATA+AGG | + | chr2_4:54534273-54534292 | None:intergenic | 20.0% |
| !! | TAACAATATTGGATATATGT+AGG | - | chr2_4:54534308-54534327 | Msa0335440:CDS | 20.0% |
| !!! | CGTTTTAATTATGGTTTTTT+TGG | - | chr2_4:54534638-54534657 | Msa0335440:intron | 20.0% |
| !!! | TTTAATTATGGTTTTTTTGG+AGG | - | chr2_4:54534641-54534660 | Msa0335440:intron | 20.0% |
| !!! | TGATTTTGCTAACAATATTA+AGG | + | chr2_4:54534722-54534741 | None:intergenic | 20.0% |
| !! | GACATTAAATAATTAAGTGT+TGG | + | chr2_4:54535148-54535167 | None:intergenic | 20.0% |
| !! | AGTAATAATGCAGAAATATT+TGG | + | chr2_4:54535276-54535295 | None:intergenic | 20.0% |
| !! | ATAATTGATAGAACTAGAAA+AGG | + | chr2_4:54535656-54535675 | None:intergenic | 20.0% |
| !! | ATAGATATACTTGACTATAT+AGG | - | chr2_4:54535766-54535785 | Msa0335440:intron | 20.0% |
| !! | TAGATATACTTGACTATATA+GGG | - | chr2_4:54535767-54535786 | Msa0335440:intron | 20.0% |
| !!! | GGATAAAACATTTTTTTAGA+AGG | + | chr2_4:54536020-54536039 | None:intergenic | 20.0% |
| !! | AAACTTGTGCAAAATATATA+AGG | + | chr2_4:54536221-54536240 | None:intergenic | 20.0% |
| !! | TTGCAATATGTACAAATAAT+TGG | - | chr2_4:54536476-54536495 | Msa0335440:CDS | 20.0% |
| !!! | GTTTGTTTCTTTTGAATTTT+AGG | - | chr2_4:54536767-54536786 | Msa0335440:five_prime_UTR | 20.0% |
| !!! | CTCATTCAACTTTTTTAATT+GGG | + | chr2_4:54536865-54536884 | None:intergenic | 20.0% |
| !!! | TCTCATTCAACTTTTTTAAT+TGG | + | chr2_4:54536866-54536885 | None:intergenic | 20.0% |
| !! | CGTAACAATTTTCAAATTGT+AGG | - | chr2_4:54533002-54533021 | Msa0335440:CDS | 25.0% |
| ! | TTCAAATTGTAGGTTTACAT+AGG | - | chr2_4:54533012-54533031 | Msa0335440:CDS | 25.0% |
| !! | GCACAAGGTTTAATAAATTT+TGG | - | chr2_4:54533061-54533080 | Msa0335440:CDS | 25.0% |
| ! | ACAAAAGATAAATGAAGATC+AGG | + | chr2_4:54533598-54533617 | None:intergenic | 25.0% |
| ! | TAAATTTGCATAGTGTAATG+TGG | - | chr2_4:54533681-54533700 | Msa0335440:intron | 25.0% |
| ! | CAAACATCAAATATGCTAAA+TGG | - | chr2_4:54533789-54533808 | Msa0335440:intron | 25.0% |
| ! | TTATAGGTATGATCCAAAAA+TGG | + | chr2_4:54534149-54534168 | None:intergenic | 25.0% |
| ! | CAAATAGATCAAAGAATAAG+GGG | + | chr2_4:54534271-54534290 | None:intergenic | 25.0% |
| !!! | TCTTTGATCTATTTGTTTTG+AGG | - | chr2_4:54534276-54534295 | Msa0335440:CDS | 25.0% |
| !!! | CTTTGATCTATTTGTTTTGA+GGG | - | chr2_4:54534277-54534296 | Msa0335440:CDS | 25.0% |
| !! | AAGAAAAAGTACATTCCAAA+AGG | + | chr2_4:54534583-54534602 | None:intergenic | 25.0% |
| !! | GCTTTGATTTCATTATATGA+TGG | + | chr2_4:54534935-54534954 | None:intergenic | 25.0% |
| !! | AATTTTACCTTCAACAATAC+CGG | - | chr2_4:54535217-54535236 | Msa0335440:intron | 25.0% |
| ! | TTCACATCTATTTGATGTAA+AGG | - | chr2_4:54535510-54535529 | Msa0335440:CDS | 25.0% |
| ! | GAAATAATATTGCACCTATT+AGG | - | chr2_4:54535545-54535564 | Msa0335440:CDS | 25.0% |
| !!! | TTGAGATAAGCTTTTTGATT+CGG | + | chr2_4:54535596-54535615 | None:intergenic | 25.0% |
| ! | AATCAAAAAGCTTATCTCAA+GGG | - | chr2_4:54535596-54535615 | Msa0335440:intron | 25.0% |
| ! | TTCATGTCATATTTACTGTA+GGG | - | chr2_4:54535949-54535968 | Msa0335440:intron | 25.0% |
| !!! | GATTTGGTTGTAATTTTGTT+TGG | + | chr2_4:54536187-54536206 | None:intergenic | 25.0% |
| !! | TAAGGTAATATTGACTGATT+TGG | + | chr2_4:54536203-54536222 | None:intergenic | 25.0% |
| ! | TTTAAAAACTTATAGGAGGA+AGG | + | chr2_4:54536363-54536382 | None:intergenic | 25.0% |
| ! | TTCGTTTAAAAACTTATAGG+AGG | + | chr2_4:54536367-54536386 | None:intergenic | 25.0% |
| ! | TCCTCTCTCATTAAAAAAAA+AGG | - | chr2_4:54536443-54536462 | Msa0335440:CDS | 25.0% |
| !!! | TCCTTTTTTTTTAATGAGAG+AGG | + | chr2_4:54536447-54536466 | None:intergenic | 25.0% |
| ! | AGATAAAACCATCTTTAGTA+GGG | + | chr2_4:54536691-54536710 | None:intergenic | 25.0% |
| !! | CGTAACAATTTTCAAATTGT+AGG | - | chr2_4:54533002-54533021 | Msa0335440:CDS | 25.0% |
| ! | TTCAAATTGTAGGTTTACAT+AGG | - | chr2_4:54533012-54533031 | Msa0335440:CDS | 25.0% |
| !! | GCACAAGGTTTAATAAATTT+TGG | - | chr2_4:54533061-54533080 | Msa0335440:CDS | 25.0% |
| ! | ACAAAAGATAAATGAAGATC+AGG | + | chr2_4:54533598-54533617 | None:intergenic | 25.0% |
| ! | TAAATTTGCATAGTGTAATG+TGG | - | chr2_4:54533681-54533700 | Msa0335440:intron | 25.0% |
| ! | CAAACATCAAATATGCTAAA+TGG | - | chr2_4:54533789-54533808 | Msa0335440:intron | 25.0% |
| ! | TTATAGGTATGATCCAAAAA+TGG | + | chr2_4:54534149-54534168 | None:intergenic | 25.0% |
| ! | CAAATAGATCAAAGAATAAG+GGG | + | chr2_4:54534271-54534290 | None:intergenic | 25.0% |
| !!! | TCTTTGATCTATTTGTTTTG+AGG | - | chr2_4:54534276-54534295 | Msa0335440:CDS | 25.0% |
| !!! | CTTTGATCTATTTGTTTTGA+GGG | - | chr2_4:54534277-54534296 | Msa0335440:CDS | 25.0% |
| !! | AAGAAAAAGTACATTCCAAA+AGG | + | chr2_4:54534583-54534602 | None:intergenic | 25.0% |
| !! | GCTTTGATTTCATTATATGA+TGG | + | chr2_4:54534935-54534954 | None:intergenic | 25.0% |
| !! | AATTTTACCTTCAACAATAC+CGG | - | chr2_4:54535217-54535236 | Msa0335440:intron | 25.0% |
| ! | TTCACATCTATTTGATGTAA+AGG | - | chr2_4:54535510-54535529 | Msa0335440:CDS | 25.0% |
| ! | GAAATAATATTGCACCTATT+AGG | - | chr2_4:54535545-54535564 | Msa0335440:CDS | 25.0% |
| !!! | TTGAGATAAGCTTTTTGATT+CGG | + | chr2_4:54535596-54535615 | None:intergenic | 25.0% |
| ! | AATCAAAAAGCTTATCTCAA+GGG | - | chr2_4:54535596-54535615 | Msa0335440:intron | 25.0% |
| ! | TTCATGTCATATTTACTGTA+GGG | - | chr2_4:54535949-54535968 | Msa0335440:intron | 25.0% |
| !!! | GATTTGGTTGTAATTTTGTT+TGG | + | chr2_4:54536187-54536206 | None:intergenic | 25.0% |
| !! | TAAGGTAATATTGACTGATT+TGG | + | chr2_4:54536203-54536222 | None:intergenic | 25.0% |
| ! | TTTAAAAACTTATAGGAGGA+AGG | + | chr2_4:54536363-54536382 | None:intergenic | 25.0% |
| ! | TTCGTTTAAAAACTTATAGG+AGG | + | chr2_4:54536367-54536386 | None:intergenic | 25.0% |
| ! | TCCTCTCTCATTAAAAAAAA+AGG | - | chr2_4:54536443-54536462 | Msa0335440:CDS | 25.0% |
| !!! | TCCTTTTTTTTTAATGAGAG+AGG | + | chr2_4:54536447-54536466 | None:intergenic | 25.0% |
| ! | AGATAAAACCATCTTTAGTA+GGG | + | chr2_4:54536691-54536710 | None:intergenic | 25.0% |
| GAAGAGTTACAAACTTATGT+TGG | - | chr2_4:54533205-54533224 | Msa0335440:intron | 30.0% | |
| !!! | GCTCAATTTTTTTGTCTACT+AGG | - | chr2_4:54533227-54533246 | Msa0335440:intron | 30.0% |
| AATGAGATATCATCACAAGA+AGG | - | chr2_4:54533472-54533491 | Msa0335440:intron | 30.0% | |
| ATGAGATATCATCACAAGAA+GGG | - | chr2_4:54533473-54533492 | Msa0335440:intron | 30.0% | |
| AATTCTAGTGAAGAAGGAAA+AGG | - | chr2_4:54533514-54533533 | Msa0335440:intron | 30.0% | |
| ATTCTAGTGAAGAAGGAAAA+GGG | - | chr2_4:54533515-54533534 | Msa0335440:intron | 30.0% | |
| !! | CAACTCATAACTTGTTTCAT+TGG | + | chr2_4:54533736-54533755 | None:intergenic | 30.0% |
| GTTATGAGTTGTGTATTTGT+TGG | - | chr2_4:54533745-54533764 | Msa0335440:intron | 30.0% | |
| !! | ACTCAAAATCTAAAGGTGTT+AGG | + | chr2_4:54533838-54533857 | None:intergenic | 30.0% |
| ! | TAACACCTTTAGATTTTGAG+TGG | - | chr2_4:54533837-54533856 | Msa0335440:intron | 30.0% |
| GTAGTTCATAGGTATGATTT+GGG | + | chr2_4:54534117-54534136 | None:intergenic | 30.0% | |
| TGTAGTTCATAGGTATGATT+TGG | + | chr2_4:54534118-54534137 | None:intergenic | 30.0% | |
| ! | CTACATCTTCAAACCATTTT+TGG | - | chr2_4:54534133-54534152 | Msa0335440:intron | 30.0% |
| ! | AAACAGTTGAAGGTATGATT+TGG | + | chr2_4:54534183-54534202 | None:intergenic | 30.0% |
| !!! | CTATTTGTTTTGAGGGTTTT+TGG | - | chr2_4:54534284-54534303 | Msa0335440:CDS | 30.0% |
| !!! | GGGTTTTTGGTTAACAATAT+TGG | - | chr2_4:54534297-54534316 | Msa0335440:CDS | 30.0% |
| ! | ATTGCGTGTGTAATTTGTAA+TGG | - | chr2_4:54534477-54534496 | Msa0335440:intron | 30.0% |
| ! | TTGCGTGTGTAATTTGTAAT+GGG | - | chr2_4:54534478-54534497 | Msa0335440:intron | 30.0% |
| !! | TAAGGTTCTGAAATATACCT+TGG | + | chr2_4:54534704-54534723 | None:intergenic | 30.0% |
| ! | AGCAAAATCATGTTTTTCCA+AGG | - | chr2_4:54534732-54534751 | Msa0335440:intron | 30.0% |
| ! | GCAAAATCATGTTTTTCCAA+GGG | - | chr2_4:54534733-54534752 | Msa0335440:intron | 30.0% |
| CATCACATTATGGATATGTA+TGG | - | chr2_4:54534836-54534855 | Msa0335440:intron | 30.0% | |
| ! | TATGATGGTTGTTTCAATAG+AGG | + | chr2_4:54534920-54534939 | None:intergenic | 30.0% |
| ! | TTTTGTAGATTTCATGAGAG+TGG | - | chr2_4:54535430-54535449 | Msa0335440:intron | 30.0% |
| TTTGTAGATTTCATGAGAGT+GGG | - | chr2_4:54535431-54535450 | Msa0335440:intron | 30.0% | |
| !! | TGAGATAAGCTTTTTGATTC+GGG | + | chr2_4:54535595-54535614 | None:intergenic | 30.0% |
| GAATCAAAAAGCTTATCTCA+AGG | - | chr2_4:54535595-54535614 | Msa0335440:intron | 30.0% | |
| ATCAAAAAGCTTATCTCAAG+GGG | - | chr2_4:54535597-54535616 | Msa0335440:intron | 30.0% | |
| TTCACTGAGTACACAATATT+TGG | - | chr2_4:54535700-54535719 | Msa0335440:intron | 30.0% | |
| GCATAAGCTTTCTTAATCAT+TGG | + | chr2_4:54535879-54535898 | None:intergenic | 30.0% | |
| CATTTGACAAAACCTAACTA+TGG | - | chr2_4:54535926-54535945 | Msa0335440:intron | 30.0% | |
| ATATGACATGAACCATAGTT+AGG | + | chr2_4:54535941-54535960 | None:intergenic | 30.0% | |
| GTTCATGTCATATTTACTGT+AGG | - | chr2_4:54535948-54535967 | Msa0335440:intron | 30.0% | |
| ATCTTGTGCTGTAACAATTA+CGG | + | chr2_4:54536134-54536153 | None:intergenic | 30.0% | |
| ! | TGACATTTTCGTGATTGTTT+TGG | + | chr2_4:54536160-54536179 | None:intergenic | 30.0% |
| GTTCGTGCATATTTATTGTA+AGG | - | chr2_4:54536622-54536641 | Msa0335440:five_prime_UTR | 30.0% | |
| GAGATAAAACCATCTTTAGT+AGG | + | chr2_4:54536692-54536711 | None:intergenic | 30.0% | |
| TGATACTTGAGTTTGATGTA+TGG | + | chr2_4:54536823-54536842 | None:intergenic | 30.0% | |
| !! | TGAAAGAGAAAGTATCGTAT+TGG | + | chr2_4:54536952-54536971 | None:intergenic | 30.0% |
| GAAGAGTTACAAACTTATGT+TGG | - | chr2_4:54533205-54533224 | Msa0335440:intron | 30.0% | |
| !!! | GCTCAATTTTTTTGTCTACT+AGG | - | chr2_4:54533227-54533246 | Msa0335440:intron | 30.0% |
| AATGAGATATCATCACAAGA+AGG | - | chr2_4:54533472-54533491 | Msa0335440:intron | 30.0% | |
| ATGAGATATCATCACAAGAA+GGG | - | chr2_4:54533473-54533492 | Msa0335440:intron | 30.0% | |
| AATTCTAGTGAAGAAGGAAA+AGG | - | chr2_4:54533514-54533533 | Msa0335440:intron | 30.0% | |
| ATTCTAGTGAAGAAGGAAAA+GGG | - | chr2_4:54533515-54533534 | Msa0335440:intron | 30.0% | |
| !! | CAACTCATAACTTGTTTCAT+TGG | + | chr2_4:54533736-54533755 | None:intergenic | 30.0% |
| GTTATGAGTTGTGTATTTGT+TGG | - | chr2_4:54533745-54533764 | Msa0335440:intron | 30.0% | |
| !! | ACTCAAAATCTAAAGGTGTT+AGG | + | chr2_4:54533838-54533857 | None:intergenic | 30.0% |
| ! | TAACACCTTTAGATTTTGAG+TGG | - | chr2_4:54533837-54533856 | Msa0335440:intron | 30.0% |
| GTAGTTCATAGGTATGATTT+GGG | + | chr2_4:54534117-54534136 | None:intergenic | 30.0% | |
| TGTAGTTCATAGGTATGATT+TGG | + | chr2_4:54534118-54534137 | None:intergenic | 30.0% | |
| ! | CTACATCTTCAAACCATTTT+TGG | - | chr2_4:54534133-54534152 | Msa0335440:intron | 30.0% |
| ! | AAACAGTTGAAGGTATGATT+TGG | + | chr2_4:54534183-54534202 | None:intergenic | 30.0% |
| !!! | CTATTTGTTTTGAGGGTTTT+TGG | - | chr2_4:54534284-54534303 | Msa0335440:CDS | 30.0% |
| !!! | GGGTTTTTGGTTAACAATAT+TGG | - | chr2_4:54534297-54534316 | Msa0335440:CDS | 30.0% |
| ! | ATTGCGTGTGTAATTTGTAA+TGG | - | chr2_4:54534477-54534496 | Msa0335440:intron | 30.0% |
| ! | TTGCGTGTGTAATTTGTAAT+GGG | - | chr2_4:54534478-54534497 | Msa0335440:intron | 30.0% |
| !! | TAAGGTTCTGAAATATACCT+TGG | + | chr2_4:54534704-54534723 | None:intergenic | 30.0% |
| ! | AGCAAAATCATGTTTTTCCA+AGG | - | chr2_4:54534732-54534751 | Msa0335440:intron | 30.0% |
| ! | GCAAAATCATGTTTTTCCAA+GGG | - | chr2_4:54534733-54534752 | Msa0335440:intron | 30.0% |
| CATCACATTATGGATATGTA+TGG | - | chr2_4:54534836-54534855 | Msa0335440:intron | 30.0% | |
| ! | TATGATGGTTGTTTCAATAG+AGG | + | chr2_4:54534920-54534939 | None:intergenic | 30.0% |
| ! | TTTTGTAGATTTCATGAGAG+TGG | - | chr2_4:54535430-54535449 | Msa0335440:intron | 30.0% |
| TTTGTAGATTTCATGAGAGT+GGG | - | chr2_4:54535431-54535450 | Msa0335440:intron | 30.0% | |
| !! | TGAGATAAGCTTTTTGATTC+GGG | + | chr2_4:54535595-54535614 | None:intergenic | 30.0% |
| GAATCAAAAAGCTTATCTCA+AGG | - | chr2_4:54535595-54535614 | Msa0335440:intron | 30.0% | |
| ATCAAAAAGCTTATCTCAAG+GGG | - | chr2_4:54535597-54535616 | Msa0335440:intron | 30.0% | |
| TTCACTGAGTACACAATATT+TGG | - | chr2_4:54535700-54535719 | Msa0335440:intron | 30.0% | |
| GCATAAGCTTTCTTAATCAT+TGG | + | chr2_4:54535879-54535898 | None:intergenic | 30.0% | |
| CATTTGACAAAACCTAACTA+TGG | - | chr2_4:54535926-54535945 | Msa0335440:intron | 30.0% | |
| ATATGACATGAACCATAGTT+AGG | + | chr2_4:54535941-54535960 | None:intergenic | 30.0% | |
| GTTCATGTCATATTTACTGT+AGG | - | chr2_4:54535948-54535967 | Msa0335440:intron | 30.0% | |
| ATCTTGTGCTGTAACAATTA+CGG | + | chr2_4:54536134-54536153 | None:intergenic | 30.0% | |
| ! | TGACATTTTCGTGATTGTTT+TGG | + | chr2_4:54536160-54536179 | None:intergenic | 30.0% |
| GTTCGTGCATATTTATTGTA+AGG | - | chr2_4:54536622-54536641 | Msa0335440:five_prime_UTR | 30.0% | |
| GAGATAAAACCATCTTTAGT+AGG | + | chr2_4:54536692-54536711 | None:intergenic | 30.0% | |
| TGATACTTGAGTTTGATGTA+TGG | + | chr2_4:54536823-54536842 | None:intergenic | 30.0% | |
| !! | TGAAAGAGAAAGTATCGTAT+TGG | + | chr2_4:54536952-54536971 | None:intergenic | 30.0% |
| ATTGTAGGTTTACATAGGTG+TGG | - | chr2_4:54533017-54533036 | Msa0335440:CDS | 35.0% | |
| !!! | ACACGATGTTGAGTTTTAGA+AGG | + | chr2_4:54533110-54533129 | None:intergenic | 35.0% |
| CATGTGATACTGATAAGTGA+AGG | - | chr2_4:54533427-54533446 | Msa0335440:intron | 35.0% | |
| ! | TGTTGCTTATTTCACCACAA+GGG | + | chr2_4:54533453-54533472 | None:intergenic | 35.0% |
| ! | TTGTTGCTTATTTCACCACA+AGG | + | chr2_4:54533454-54533473 | None:intergenic | 35.0% |
| ACACTCCACTCAAAATCTAA+AGG | + | chr2_4:54533845-54533864 | None:intergenic | 35.0% | |
| !! | TTTAGATTTTGAGTGGAGTG+TGG | - | chr2_4:54533844-54533863 | Msa0335440:intron | 35.0% |
| GTATCTCTGTCTTGTAATCT+TGG | - | chr2_4:54533874-54533893 | Msa0335440:intron | 35.0% | |
| TTCAGAGATCAATATTGTCG+AGG | + | chr2_4:54533939-54533958 | None:intergenic | 35.0% | |
| CTCTGAATTCTATCGTGATT+AGG | - | chr2_4:54533952-54533971 | Msa0335440:intron | 35.0% | |
| GATTAGGAAGTAGTTCTTTC+CGG | - | chr2_4:54533968-54533987 | Msa0335440:intron | 35.0% | |
| !! | GTTGAAGGAGTATCAAGAAT+AGG | + | chr2_4:54534092-54534111 | None:intergenic | 35.0% |
| GGTTTGAAGATGTAGTTCAT+AGG | + | chr2_4:54534128-54534147 | None:intergenic | 35.0% | |
| ! | AGTTCAGAAACATGTCCTTT+TGG | - | chr2_4:54534565-54534584 | Msa0335440:intron | 35.0% |
| ! | ACTCATCAAGCTTTTTACTC+CGG | + | chr2_4:54534677-54534696 | None:intergenic | 35.0% |
| AGTAAAAAGCTTGATGAGTC+TGG | - | chr2_4:54534678-54534697 | Msa0335440:intron | 35.0% | |
| CATGTGATGTATAAAACCCT+TGG | + | chr2_4:54534752-54534771 | None:intergenic | 35.0% | |
| !!! | TCCTTGCGTTCTATTTTTGT+GGG | + | chr2_4:54534813-54534832 | None:intergenic | 35.0% |
| !!! | TTCCTTGCGTTCTATTTTTG+TGG | + | chr2_4:54534814-54534833 | None:intergenic | 35.0% |
| TATGGAAGATTCAATGTCCA+AGG | - | chr2_4:54534854-54534873 | Msa0335440:intron | 35.0% | |
| !! | TCCTAACCCTAAAGTTTTGT+TGG | - | chr2_4:54535110-54535129 | Msa0335440:intron | 35.0% |
| !!! | CCTAACCCTAAAGTTTTGTT+GGG | - | chr2_4:54535111-54535130 | Msa0335440:intron | 35.0% |
| !! | TTTGTACCCTACAGTTTTGT+AGG | + | chr2_4:54535246-54535265 | None:intergenic | 35.0% |
| TTATCTCAAGGGGATGATAA+TGG | - | chr2_4:54535607-54535626 | Msa0335440:intron | 35.0% | |
| ! | ATGGTGCAAAACATTTTCCA+TGG | - | chr2_4:54535626-54535645 | Msa0335440:intron | 35.0% |
| ATTGTGTACTCAGTGAAGAT+AGG | + | chr2_4:54535697-54535716 | None:intergenic | 35.0% | |
| !! | GTACACAATATTTGGTTCTG+AGG | - | chr2_4:54535708-54535727 | Msa0335440:intron | 35.0% |
| AGTTTGATTGCACAAGTAAG+TGG | - | chr2_4:54536236-54536255 | Msa0335440:intron | 35.0% | |
| AAAACCATCTTTAGTAGGGA+TGG | + | chr2_4:54536687-54536706 | None:intergenic | 35.0% | |
| ATTGTAGGTTTACATAGGTG+TGG | - | chr2_4:54533017-54533036 | Msa0335440:CDS | 35.0% | |
| !!! | ACACGATGTTGAGTTTTAGA+AGG | + | chr2_4:54533110-54533129 | None:intergenic | 35.0% |
| CATGTGATACTGATAAGTGA+AGG | - | chr2_4:54533427-54533446 | Msa0335440:intron | 35.0% | |
| ! | TGTTGCTTATTTCACCACAA+GGG | + | chr2_4:54533453-54533472 | None:intergenic | 35.0% |
| ! | TTGTTGCTTATTTCACCACA+AGG | + | chr2_4:54533454-54533473 | None:intergenic | 35.0% |
| ACACTCCACTCAAAATCTAA+AGG | + | chr2_4:54533845-54533864 | None:intergenic | 35.0% | |
| !! | TTTAGATTTTGAGTGGAGTG+TGG | - | chr2_4:54533844-54533863 | Msa0335440:intron | 35.0% |
| GTATCTCTGTCTTGTAATCT+TGG | - | chr2_4:54533874-54533893 | Msa0335440:intron | 35.0% | |
| TTCAGAGATCAATATTGTCG+AGG | + | chr2_4:54533939-54533958 | None:intergenic | 35.0% | |
| CTCTGAATTCTATCGTGATT+AGG | - | chr2_4:54533952-54533971 | Msa0335440:intron | 35.0% | |
| GATTAGGAAGTAGTTCTTTC+CGG | - | chr2_4:54533968-54533987 | Msa0335440:intron | 35.0% | |
| !! | GTTGAAGGAGTATCAAGAAT+AGG | + | chr2_4:54534092-54534111 | None:intergenic | 35.0% |
| GGTTTGAAGATGTAGTTCAT+AGG | + | chr2_4:54534128-54534147 | None:intergenic | 35.0% | |
| ! | AGTTCAGAAACATGTCCTTT+TGG | - | chr2_4:54534565-54534584 | Msa0335440:intron | 35.0% |
| ! | ACTCATCAAGCTTTTTACTC+CGG | + | chr2_4:54534677-54534696 | None:intergenic | 35.0% |
| AGTAAAAAGCTTGATGAGTC+TGG | - | chr2_4:54534678-54534697 | Msa0335440:intron | 35.0% | |
| CATGTGATGTATAAAACCCT+TGG | + | chr2_4:54534752-54534771 | None:intergenic | 35.0% | |
| !!! | TCCTTGCGTTCTATTTTTGT+GGG | + | chr2_4:54534813-54534832 | None:intergenic | 35.0% |
| !!! | TTCCTTGCGTTCTATTTTTG+TGG | + | chr2_4:54534814-54534833 | None:intergenic | 35.0% |
| TATGGAAGATTCAATGTCCA+AGG | - | chr2_4:54534854-54534873 | Msa0335440:intron | 35.0% | |
| !! | TCCTAACCCTAAAGTTTTGT+TGG | - | chr2_4:54535110-54535129 | Msa0335440:intron | 35.0% |
| !!! | CCTAACCCTAAAGTTTTGTT+GGG | - | chr2_4:54535111-54535130 | Msa0335440:intron | 35.0% |
| !! | TTTGTACCCTACAGTTTTGT+AGG | + | chr2_4:54535246-54535265 | None:intergenic | 35.0% |
| TTATCTCAAGGGGATGATAA+TGG | - | chr2_4:54535607-54535626 | Msa0335440:intron | 35.0% | |
| ! | ATGGTGCAAAACATTTTCCA+TGG | - | chr2_4:54535626-54535645 | Msa0335440:intron | 35.0% |
| ATTGTGTACTCAGTGAAGAT+AGG | + | chr2_4:54535697-54535716 | None:intergenic | 35.0% | |
| !! | GTACACAATATTTGGTTCTG+AGG | - | chr2_4:54535708-54535727 | Msa0335440:intron | 35.0% |
| AGTTTGATTGCACAAGTAAG+TGG | - | chr2_4:54536236-54536255 | Msa0335440:intron | 35.0% | |
| AAAACCATCTTTAGTAGGGA+TGG | + | chr2_4:54536687-54536706 | None:intergenic | 35.0% | |
| TCACTCTTGACATCTTTGCT+AGG | + | chr2_4:54533307-54533326 | None:intergenic | 40.0% | |
| GTCAAGAGTGAAAGTAGTAG+CGG | - | chr2_4:54533316-54533335 | Msa0335440:intron | 40.0% | |
| ! | TTTTCTTCCAATCTGCCAAG+AGG | + | chr2_4:54533359-54533378 | None:intergenic | 40.0% |
| CGATTTAAATGAAGATGCCG+TGG | - | chr2_4:54533390-54533409 | Msa0335440:intron | 40.0% | |
| ATGATCATCTCCATCATCCA+CGG | + | chr2_4:54533410-54533429 | None:intergenic | 40.0% | |
| CATCACAAGAAGGGAATTTG+AGG | - | chr2_4:54533482-54533501 | Msa0335440:intron | 40.0% | |
| GTACGGTTAGACAATATGTG+AGG | - | chr2_4:54533545-54533564 | Msa0335440:intron | 40.0% | |
| TTGTCGAGGAGTTCAGTAAA+GGG | + | chr2_4:54533925-54533944 | None:intergenic | 40.0% | |
| ATTGTCGAGGAGTTCAGTAA+AGG | + | chr2_4:54533926-54533945 | None:intergenic | 40.0% | |
| GAGTATCAAGAATAGGTCAG+GGG | + | chr2_4:54534085-54534104 | None:intergenic | 40.0% | |
| ! | GGAGTATCAAGAATAGGTCA+GGG | + | chr2_4:54534086-54534105 | None:intergenic | 40.0% |
| !! | AGGAGTATCAAGAATAGGTC+AGG | + | chr2_4:54534087-54534106 | None:intergenic | 40.0% |
| ATCAACTGGAGAACCAACTT+GGG | + | chr2_4:54534341-54534360 | None:intergenic | 40.0% | |
| ACATGTGAAGAGTCATTTGC+AGG | - | chr2_4:54534385-54534404 | Msa0335440:CDS | 40.0% | |
| !! | TTTTGGAGGTTCAGATGTAC+CGG | - | chr2_4:54534655-54534674 | Msa0335440:intron | 40.0% |
| TCCCACAAAAATAGAACGCA+AGG | - | chr2_4:54534809-54534828 | Msa0335440:intron | 40.0% | |
| TTCAATGTCCAAGGACACTT+TGG | - | chr2_4:54534863-54534882 | Msa0335440:intron | 40.0% | |
| ! | TTTCAACACCAAAGTGTCCT+TGG | + | chr2_4:54534874-54534893 | None:intergenic | 40.0% |
| GTTTCAATAGAGGAGACGAT+GGG | + | chr2_4:54534910-54534929 | None:intergenic | 40.0% | |
| TGTTTCAATAGAGGAGACGA+TGG | + | chr2_4:54534911-54534930 | None:intergenic | 40.0% | |
| TCAAAGCTCATGACACTTCA+AGG | - | chr2_4:54534948-54534967 | Msa0335440:CDS | 40.0% | |
| !! | CCCAACAAAACTTTAGGGTT+AGG | + | chr2_4:54535114-54535133 | None:intergenic | 40.0% |
| CTACGCCCAACAAAACTTTA+GGG | + | chr2_4:54535119-54535138 | None:intergenic | 40.0% | |
| TCTTCAGATCAAGTTCAGTG+TGG | - | chr2_4:54535476-54535495 | Msa0335440:intron | 40.0% | |
| CTTCAGATCAAGTTCAGTGT+GGG | - | chr2_4:54535477-54535496 | Msa0335440:intron | 40.0% | |
| CTTACTTGGCTAGACCTAAT+AGG | + | chr2_4:54535562-54535581 | None:intergenic | 40.0% | |
| ! | CGGGTAGTAATTGACTTACT+TGG | + | chr2_4:54535576-54535595 | None:intergenic | 40.0% |
| ACTATATAGGGCCAACTCTA+TGG | - | chr2_4:54535779-54535798 | Msa0335440:intron | 40.0% | |
| ATCCTTGTGTACCATAGAGT+TGG | + | chr2_4:54535793-54535812 | None:intergenic | 40.0% | |
| CTTTCCATCCCTACTAAAGA+TGG | - | chr2_4:54536680-54536699 | Msa0335440:five_prime_UTR | 40.0% | |
| TCACTCTTGACATCTTTGCT+AGG | + | chr2_4:54533307-54533326 | None:intergenic | 40.0% | |
| GTCAAGAGTGAAAGTAGTAG+CGG | - | chr2_4:54533316-54533335 | Msa0335440:intron | 40.0% | |
| ! | TTTTCTTCCAATCTGCCAAG+AGG | + | chr2_4:54533359-54533378 | None:intergenic | 40.0% |
| CGATTTAAATGAAGATGCCG+TGG | - | chr2_4:54533390-54533409 | Msa0335440:intron | 40.0% | |
| ATGATCATCTCCATCATCCA+CGG | + | chr2_4:54533410-54533429 | None:intergenic | 40.0% | |
| CATCACAAGAAGGGAATTTG+AGG | - | chr2_4:54533482-54533501 | Msa0335440:intron | 40.0% | |
| GTACGGTTAGACAATATGTG+AGG | - | chr2_4:54533545-54533564 | Msa0335440:intron | 40.0% | |
| TTGTCGAGGAGTTCAGTAAA+GGG | + | chr2_4:54533925-54533944 | None:intergenic | 40.0% | |
| ATTGTCGAGGAGTTCAGTAA+AGG | + | chr2_4:54533926-54533945 | None:intergenic | 40.0% | |
| GAGTATCAAGAATAGGTCAG+GGG | + | chr2_4:54534085-54534104 | None:intergenic | 40.0% | |
| ! | GGAGTATCAAGAATAGGTCA+GGG | + | chr2_4:54534086-54534105 | None:intergenic | 40.0% |
| !! | AGGAGTATCAAGAATAGGTC+AGG | + | chr2_4:54534087-54534106 | None:intergenic | 40.0% |
| ATCAACTGGAGAACCAACTT+GGG | + | chr2_4:54534341-54534360 | None:intergenic | 40.0% | |
| ACATGTGAAGAGTCATTTGC+AGG | - | chr2_4:54534385-54534404 | Msa0335440:CDS | 40.0% | |
| !! | TTTTGGAGGTTCAGATGTAC+CGG | - | chr2_4:54534655-54534674 | Msa0335440:intron | 40.0% |
| TCCCACAAAAATAGAACGCA+AGG | - | chr2_4:54534809-54534828 | Msa0335440:intron | 40.0% | |
| TTCAATGTCCAAGGACACTT+TGG | - | chr2_4:54534863-54534882 | Msa0335440:intron | 40.0% | |
| ! | TTTCAACACCAAAGTGTCCT+TGG | + | chr2_4:54534874-54534893 | None:intergenic | 40.0% |
| GTTTCAATAGAGGAGACGAT+GGG | + | chr2_4:54534910-54534929 | None:intergenic | 40.0% | |
| TGTTTCAATAGAGGAGACGA+TGG | + | chr2_4:54534911-54534930 | None:intergenic | 40.0% | |
| TCAAAGCTCATGACACTTCA+AGG | - | chr2_4:54534948-54534967 | Msa0335440:CDS | 40.0% | |
| !! | CCCAACAAAACTTTAGGGTT+AGG | + | chr2_4:54535114-54535133 | None:intergenic | 40.0% |
| CTACGCCCAACAAAACTTTA+GGG | + | chr2_4:54535119-54535138 | None:intergenic | 40.0% | |
| TCTTCAGATCAAGTTCAGTG+TGG | - | chr2_4:54535476-54535495 | Msa0335440:intron | 40.0% | |
| CTTCAGATCAAGTTCAGTGT+GGG | - | chr2_4:54535477-54535496 | Msa0335440:intron | 40.0% | |
| CTTACTTGGCTAGACCTAAT+AGG | + | chr2_4:54535562-54535581 | None:intergenic | 40.0% | |
| ! | CGGGTAGTAATTGACTTACT+TGG | + | chr2_4:54535576-54535595 | None:intergenic | 40.0% |
| ACTATATAGGGCCAACTCTA+TGG | - | chr2_4:54535779-54535798 | Msa0335440:intron | 40.0% | |
| ATCCTTGTGTACCATAGAGT+TGG | + | chr2_4:54535793-54535812 | None:intergenic | 40.0% | |
| CTTTCCATCCCTACTAAAGA+TGG | - | chr2_4:54536680-54536699 | Msa0335440:five_prime_UTR | 40.0% | |
| TAAACCTTGTGCTCGTTCCT+AGG | + | chr2_4:54533053-54533072 | None:intergenic | 45.0% | |
| AGTGAAAGTAGTAGCGGCAT+CGG | - | chr2_4:54533322-54533341 | Msa0335440:intron | 45.0% | |
| AATGAAGATGCCGTGGATGA+TGG | - | chr2_4:54533397-54533416 | Msa0335440:intron | 45.0% | |
| ATGTGAGGTCGAAAATGCCT+AGG | - | chr2_4:54533560-54533579 | Msa0335440:intron | 45.0% | |
| ! | CTTTTGTGCATGCTGTTGAG+AGG | - | chr2_4:54533611-54533630 | Msa0335440:intron | 45.0% |
| TTGGAGGGCAAGAAAGTAAG+TGG | - | chr2_4:54533635-54533654 | Msa0335440:intron | 45.0% | |
| TGGAGGGCAAGAAAGTAAGT+GGG | - | chr2_4:54533636-54533655 | Msa0335440:intron | 45.0% | |
| CTTGTTTCATTGGTCGCCAA+AGG | + | chr2_4:54533726-54533745 | None:intergenic | 45.0% | |
| ! | GGTATGATTTGGGACGTTGA+AGG | + | chr2_4:54534107-54534126 | None:intergenic | 45.0% |
| CATCAACTGGAGAACCAACT+TGG | + | chr2_4:54534342-54534361 | None:intergenic | 45.0% | |
| !! | CTCCAGTTGATGAATGTGAG+AGG | - | chr2_4:54534350-54534369 | Msa0335440:CDS | 45.0% |
| GTCCTCTCACATTCATCAAC+TGG | + | chr2_4:54534355-54534374 | None:intergenic | 45.0% | |
| GCAAGGAACGCATCACATTA+TGG | - | chr2_4:54534826-54534845 | Msa0335440:intron | 45.0% | |
| TCCATGTACGTTGAGTGATG+TGG | - | chr2_4:54535041-54535060 | Msa0335440:CDS | 45.0% | |
| CCATGTACGTTGAGTGATGT+GGG | - | chr2_4:54535042-54535061 | Msa0335440:CDS | 45.0% | |
| CCTACGCCCAACAAAACTTT+AGG | + | chr2_4:54535120-54535139 | None:intergenic | 45.0% | |
| !!! | CCTAAAGTTTTGTTGGGCGT+AGG | - | chr2_4:54535117-54535136 | Msa0335440:intron | 45.0% |
| TAGGACACCGGTATTGTTGA+AGG | + | chr2_4:54535227-54535246 | None:intergenic | 45.0% | |
| !! | CCTACAGTTTTGTAGGACAC+CGG | + | chr2_4:54535239-54535258 | None:intergenic | 45.0% |
| CGGTGTCCTACAAAACTGTA+GGG | - | chr2_4:54535237-54535256 | Msa0335440:intron | 45.0% | |
| !! | GAACTAGAAAAGGTGCTCCA+TGG | + | chr2_4:54535646-54535665 | None:intergenic | 45.0% |
| GGACAACTCAATAGTGCACA+AGG | - | chr2_4:54536412-54536431 | Msa0335440:CDS | 45.0% | |
| !! | CTCGACTTAGCTTTAGCTCT+AGG | + | chr2_4:54536908-54536927 | None:intergenic | 45.0% |
| TAAACCTTGTGCTCGTTCCT+AGG | + | chr2_4:54533053-54533072 | None:intergenic | 45.0% | |
| AGTGAAAGTAGTAGCGGCAT+CGG | - | chr2_4:54533322-54533341 | Msa0335440:intron | 45.0% | |
| AATGAAGATGCCGTGGATGA+TGG | - | chr2_4:54533397-54533416 | Msa0335440:intron | 45.0% | |
| ATGTGAGGTCGAAAATGCCT+AGG | - | chr2_4:54533560-54533579 | Msa0335440:intron | 45.0% | |
| ! | CTTTTGTGCATGCTGTTGAG+AGG | - | chr2_4:54533611-54533630 | Msa0335440:intron | 45.0% |
| TTGGAGGGCAAGAAAGTAAG+TGG | - | chr2_4:54533635-54533654 | Msa0335440:intron | 45.0% | |
| TGGAGGGCAAGAAAGTAAGT+GGG | - | chr2_4:54533636-54533655 | Msa0335440:intron | 45.0% | |
| CTTGTTTCATTGGTCGCCAA+AGG | + | chr2_4:54533726-54533745 | None:intergenic | 45.0% | |
| ! | GGTATGATTTGGGACGTTGA+AGG | + | chr2_4:54534107-54534126 | None:intergenic | 45.0% |
| CATCAACTGGAGAACCAACT+TGG | + | chr2_4:54534342-54534361 | None:intergenic | 45.0% | |
| !! | CTCCAGTTGATGAATGTGAG+AGG | - | chr2_4:54534350-54534369 | Msa0335440:CDS | 45.0% |
| GTCCTCTCACATTCATCAAC+TGG | + | chr2_4:54534355-54534374 | None:intergenic | 45.0% | |
| GCAAGGAACGCATCACATTA+TGG | - | chr2_4:54534826-54534845 | Msa0335440:intron | 45.0% | |
| TCCATGTACGTTGAGTGATG+TGG | - | chr2_4:54535041-54535060 | Msa0335440:CDS | 45.0% | |
| CCATGTACGTTGAGTGATGT+GGG | - | chr2_4:54535042-54535061 | Msa0335440:CDS | 45.0% | |
| CCTACGCCCAACAAAACTTT+AGG | + | chr2_4:54535120-54535139 | None:intergenic | 45.0% | |
| !!! | CCTAAAGTTTTGTTGGGCGT+AGG | - | chr2_4:54535117-54535136 | Msa0335440:intron | 45.0% |
| TAGGACACCGGTATTGTTGA+AGG | + | chr2_4:54535227-54535246 | None:intergenic | 45.0% | |
| !! | CCTACAGTTTTGTAGGACAC+CGG | + | chr2_4:54535239-54535258 | None:intergenic | 45.0% |
| CGGTGTCCTACAAAACTGTA+GGG | - | chr2_4:54535237-54535256 | Msa0335440:intron | 45.0% | |
| !! | GAACTAGAAAAGGTGCTCCA+TGG | + | chr2_4:54535646-54535665 | None:intergenic | 45.0% |
| GGACAACTCAATAGTGCACA+AGG | - | chr2_4:54536412-54536431 | Msa0335440:CDS | 45.0% | |
| !! | CTCGACTTAGCTTTAGCTCT+AGG | + | chr2_4:54536908-54536927 | None:intergenic | 45.0% |
| GGTGTGGAATTCCAAGACCT+AGG | - | chr2_4:54533033-54533052 | Msa0335440:CDS | 50.0% | |
| TTGTGCTCGTTCCTAGGTCT+TGG | + | chr2_4:54533047-54533066 | None:intergenic | 50.0% | |
| AAGACCTAGGAACGAGCACA+AGG | - | chr2_4:54533046-54533065 | Msa0335440:CDS | 50.0% | |
| CTGATAAGTGAAGGCCCTTG+TGG | - | chr2_4:54533436-54533455 | Msa0335440:intron | 50.0% | |
| AGTGAAGAAGGAAAAGGGCG+TGG | - | chr2_4:54533520-54533539 | Msa0335440:intron | 50.0% | |
| ! | AGGAAAAGGGCGTGGAAGTA+CGG | - | chr2_4:54533528-54533547 | Msa0335440:intron | 50.0% |
| CGAAAATGCCTAGGCTTCGT+TGG | - | chr2_4:54533569-54533588 | Msa0335440:intron | 50.0% | |
| ATGCTGTTGAGAGGCTTGGA+GGG | - | chr2_4:54533620-54533639 | Msa0335440:intron | 50.0% | |
| ! | AGTAGTTCTTTCCGGTGTCG+TGG | - | chr2_4:54533976-54533995 | Msa0335440:intron | 50.0% |
| TGTAGGAGCAACACCCAAGT+TGG | - | chr2_4:54534325-54534344 | Msa0335440:CDS | 50.0% | |
| AAGCTTGATGAGTCTGGCCA+AGG | - | chr2_4:54534684-54534703 | Msa0335440:intron | 50.0% | |
| CCCACATCACTCAACGTACA+TGG | + | chr2_4:54535045-54535064 | None:intergenic | 50.0% | |
| CCGGTGTCCTACAAAACTGT+AGG | - | chr2_4:54535236-54535255 | Msa0335440:intron | 50.0% | |
| GGCCAACTCTATGGTACACA+AGG | - | chr2_4:54535788-54535807 | Msa0335440:intron | 50.0% | |
| GGTGTGGAATTCCAAGACCT+AGG | - | chr2_4:54533033-54533052 | Msa0335440:CDS | 50.0% | |
| TTGTGCTCGTTCCTAGGTCT+TGG | + | chr2_4:54533047-54533066 | None:intergenic | 50.0% | |
| AAGACCTAGGAACGAGCACA+AGG | - | chr2_4:54533046-54533065 | Msa0335440:CDS | 50.0% | |
| CTGATAAGTGAAGGCCCTTG+TGG | - | chr2_4:54533436-54533455 | Msa0335440:intron | 50.0% | |
| AGTGAAGAAGGAAAAGGGCG+TGG | - | chr2_4:54533520-54533539 | Msa0335440:intron | 50.0% | |
| ! | AGGAAAAGGGCGTGGAAGTA+CGG | - | chr2_4:54533528-54533547 | Msa0335440:intron | 50.0% |
| CGAAAATGCCTAGGCTTCGT+TGG | - | chr2_4:54533569-54533588 | Msa0335440:intron | 50.0% | |
| ATGCTGTTGAGAGGCTTGGA+GGG | - | chr2_4:54533620-54533639 | Msa0335440:intron | 50.0% | |
| ! | AGTAGTTCTTTCCGGTGTCG+TGG | - | chr2_4:54533976-54533995 | Msa0335440:intron | 50.0% |
| TGTAGGAGCAACACCCAAGT+TGG | - | chr2_4:54534325-54534344 | Msa0335440:CDS | 50.0% | |
| AAGCTTGATGAGTCTGGCCA+AGG | - | chr2_4:54534684-54534703 | Msa0335440:intron | 50.0% | |
| CCCACATCACTCAACGTACA+TGG | + | chr2_4:54535045-54535064 | None:intergenic | 50.0% | |
| CCGGTGTCCTACAAAACTGT+AGG | - | chr2_4:54535236-54535255 | Msa0335440:intron | 50.0% | |
| GGCCAACTCTATGGTACACA+AGG | - | chr2_4:54535788-54535807 | Msa0335440:intron | 50.0% | |
| ! | TAGCGGCATCGGAGAGAAAC+CGG | - | chr2_4:54533333-54533352 | Msa0335440:intron | 55.0% |
| AAACCGGCCTCTTGGCAGAT+TGG | - | chr2_4:54533349-54533368 | Msa0335440:intron | 55.0% | |
| CTTCCAATCTGCCAAGAGGC+CGG | + | chr2_4:54533355-54533374 | None:intergenic | 55.0% | |
| TCAGGAGTCCAACGAAGCCT+AGG | + | chr2_4:54533580-54533599 | None:intergenic | 55.0% | |
| GTGCATGCTGTTGAGAGGCT+TGG | - | chr2_4:54533616-54533635 | Msa0335440:intron | 55.0% | |
| CATGCTGTTGAGAGGCTTGG+AGG | - | chr2_4:54533619-54533638 | Msa0335440:intron | 55.0% | |
| ACGCACACAAACCACGACAC+CGG | + | chr2_4:54533990-54534009 | None:intergenic | 55.0% | |
| ! | TAGCGGCATCGGAGAGAAAC+CGG | - | chr2_4:54533333-54533352 | Msa0335440:intron | 55.0% |
| AAACCGGCCTCTTGGCAGAT+TGG | - | chr2_4:54533349-54533368 | Msa0335440:intron | 55.0% | |
| CTTCCAATCTGCCAAGAGGC+CGG | + | chr2_4:54533355-54533374 | None:intergenic | 55.0% | |
| TCAGGAGTCCAACGAAGCCT+AGG | + | chr2_4:54533580-54533599 | None:intergenic | 55.0% | |
| GTGCATGCTGTTGAGAGGCT+TGG | - | chr2_4:54533616-54533635 | Msa0335440:intron | 55.0% | |
| CATGCTGTTGAGAGGCTTGG+AGG | - | chr2_4:54533619-54533638 | Msa0335440:intron | 55.0% | |
| ACGCACACAAACCACGACAC+CGG | + | chr2_4:54533990-54534009 | None:intergenic | 55.0% | |
| TCGGAGAGAAACCGGCCTCT+TGG | - | chr2_4:54533341-54533360 | Msa0335440:intron | 60.0% | |
| TCGGAGAGAAACCGGCCTCT+TGG | - | chr2_4:54533341-54533360 | Msa0335440:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 54532906 | 54536989 | 54532906 | ID=Msa0335440;Name=Msa0335440 |
| chr2_4 | mRNA | 54532906 | 54536989 | 54532906 | ID=Msa0335440-mRNA-1;Parent=Msa0335440;Name=Msa0335440-mRNA-1;_AED=0.07;_eAED=0.07;_QI=386|1|0.66|1|1|1|6|0|376 |
| chr2_4 | exon | 54532906 | 54533106 | 54532906 | ID=Msa0335440-mRNA-1:exon:16491;Parent=Msa0335440-mRNA-1 |
| chr2_4 | exon | 54534166 | 54534457 | 54534166 | ID=Msa0335440-mRNA-1:exon:16490;Parent=Msa0335440-mRNA-1 |
| chr2_4 | exon | 54534926 | 54535091 | 54534926 | ID=Msa0335440-mRNA-1:exon:16489;Parent=Msa0335440-mRNA-1 |
| chr2_4 | exon | 54535190 | 54535226 | 54535190 | ID=Msa0335440-mRNA-1:exon:16488;Parent=Msa0335440-mRNA-1 |
| chr2_4 | exon | 54535489 | 54535565 | 54535489 | ID=Msa0335440-mRNA-1:exon:16487;Parent=Msa0335440-mRNA-1 |
| chr2_4 | exon | 54536246 | 54536989 | 54536246 | ID=Msa0335440-mRNA-1:exon:16486;Parent=Msa0335440-mRNA-1 |
| chr2_4 | five_prime_UTR | 54536604 | 54536989 | 54536604 | ID=Msa0335440-mRNA-1:five_prime_utr;Parent=Msa0335440-mRNA-1 |
| chr2_4 | CDS | 54536246 | 54536603 | 54536246 | ID=Msa0335440-mRNA-1:cds;Parent=Msa0335440-mRNA-1 |
| chr2_4 | CDS | 54535489 | 54535565 | 54535489 | ID=Msa0335440-mRNA-1:cds;Parent=Msa0335440-mRNA-1 |
| chr2_4 | CDS | 54535190 | 54535226 | 54535190 | ID=Msa0335440-mRNA-1:cds;Parent=Msa0335440-mRNA-1 |
| chr2_4 | CDS | 54534926 | 54535091 | 54534926 | ID=Msa0335440-mRNA-1:cds;Parent=Msa0335440-mRNA-1 |
| chr2_4 | CDS | 54534166 | 54534457 | 54534166 | ID=Msa0335440-mRNA-1:cds;Parent=Msa0335440-mRNA-1 |
| chr2_4 | CDS | 54532906 | 54533106 | 54532906 | ID=Msa0335440-mRNA-1:cds;Parent=Msa0335440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
