Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335460 | XP_013464830.1 | 97.857 | 140 | 3 | 0 | 1 | 140 | 1 | 140 | 9.10e-93 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335460 | sp|Q9LXT3|MBF1B_ARATH | 80.435 | 138 | 27 | 0 | 3 | 140 | 5 | 142 | 6.81e-80 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0335460 | TR | MBF1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335460 | MtrunA17_Chr2g0320211 | 97.857 | 140 | 3 | 0 | 1 | 140 | 1 | 140 | 8.37e-97 | 275 |
| Msa0335460 | MtrunA17_Chr4g0041301 | 92.029 | 138 | 11 | 0 | 3 | 140 | 5 | 142 | 2.08e-83 | 241 |
| Msa0335460 | MtrunA17_Chr6g0485281 | 50.000 | 114 | 57 | 0 | 3 | 116 | 10 | 123 | 5.69e-33 | 112 |
| Msa0335460 | MtrunA17_Chr6g0457491 | 90.909 | 55 | 5 | 0 | 86 | 140 | 1 | 55 | 4.21e-29 | 100 |
| Msa0335460 | MtrunA17_Chr7g0275831 | 95.000 | 40 | 2 | 0 | 90 | 129 | 1 | 40 | 1.61e-20 | 79.3 |
| Msa0335460 | MtrunA17_Chr4g0057871 | 54.545 | 77 | 22 | 1 | 30 | 93 | 9 | 85 | 2.17e-17 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335460 | AT3G58680.1 | 80.435 | 138 | 27 | 0 | 3 | 140 | 5 | 142 | 6.92e-81 | 234 |
| Msa0335460 | AT2G42680.1 | 81.884 | 138 | 25 | 0 | 3 | 140 | 5 | 142 | 1.49e-80 | 234 |
| Msa0335460 | AT3G24500.1 | 51.079 | 139 | 66 | 1 | 3 | 139 | 7 | 145 | 2.34e-43 | 140 |
| Msa0335460 | AT3G24500.2 | 43.820 | 89 | 48 | 1 | 3 | 89 | 7 | 95 | 2.46e-16 | 69.7 |
Find 60 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCAATGATCTGCTGATT+TGG | 0.246748 | 2_4:-54566655 | None:intergenic |
| TTTCTTCATGGTTTCGATAT+CGG | 0.259177 | 2_4:-54563366 | None:intergenic |
| ATCCTTCCTGGCAGCGGCGG+TGG | 0.288753 | 2_4:-54563309 | None:intergenic |
| TTGTTGCGTTGAGTCGGTAT+AGG | 0.295025 | 2_4:-54563201 | None:intergenic |
| ATGGTTGAATGGTTTGAATT+TGG | 0.300458 | 2_4:-54563233 | None:intergenic |
| GACAGCTTTGTCATCCTTCC+TGG | 0.316434 | 2_4:-54563321 | None:intergenic |
| TTTGAACAGGTGAAAGCTTC+AGG | 0.336840 | 2_4:-54566850 | None:intergenic |
| TCTGATAGAATCTTGAAATC+TGG | 0.358683 | 2_4:+54567015 | Msa0335460:three_prime_UTR |
| GCACTTCATTGAACATTAAG+AGG | 0.360745 | 2_4:+54564869 | Msa0335460:CDS |
| CAGGACCCGTTTCACAAGAT+TGG | 0.366530 | 2_4:+54563258 | Msa0335460:CDS |
| TGTTGCGTTGAGTCGGTATA+GGG | 0.383171 | 2_4:-54563200 | None:intergenic |
| GACTTGTTTGCGCAGATGAT+CGG | 0.384244 | 2_4:+54566410 | Msa0335460:intron |
| GTGATCCAGGAGTACGAGTC+AGG | 0.396136 | 2_4:+54566622 | Msa0335460:CDS |
| TCCTTCCTGGCAGCGGCGGT+GGG | 0.408929 | 2_4:-54563308 | None:intergenic |
| CGGGTCCTGCCATGGTTGAA+TGG | 0.418153 | 2_4:-54563244 | None:intergenic |
| AGAAGCTCAACGTTTCTTCA+TGG | 0.430879 | 2_4:-54563378 | None:intergenic |
| TCATTTCTTCCCACGCAGTT+TGG | 0.431740 | 2_4:-54566698 | None:intergenic |
| AAATGAGAAAGCTAATTTGA+TGG | 0.438169 | 2_4:+54566715 | Msa0335460:exon |
| AGGACCCGTTTCACAAGATT+GGG | 0.440017 | 2_4:+54563259 | Msa0335460:CDS |
| GGCAAGTTGGAGAGAGCTCT+TGG | 0.442294 | 2_4:+54566673 | Msa0335460:CDS |
| AAGCTCCCACCGCCGCTGCC+AGG | 0.442991 | 2_4:+54563303 | Msa0335460:CDS |
| GTCAACGCCGCTCGTCGTGC+CGG | 0.452741 | 2_4:+54563341 | Msa0335460:CDS |
| AGTAAGCTTCTTGTCCATCC+TGG | 0.456590 | 2_4:-54566467 | None:intergenic |
| ACTTGTTTGCGCAGATGATC+GGG | 0.459972 | 2_4:+54566411 | Msa0335460:intron |
| CTTTCCCTGACTCGTACTCC+TGG | 0.461120 | 2_4:-54566627 | None:intergenic |
| TTGATGGCTGTGTATGTAGT+TGG | 0.462014 | 2_4:+54566731 | Msa0335460:three_prime_UTR |
| ATTCCAAATCAGCAGATCAT+TGG | 0.464427 | 2_4:+54566652 | Msa0335460:CDS |
| GGTTCCCAATCTTGTGAAAC+GGG | 0.465547 | 2_4:-54563263 | None:intergenic |
| GCTTTCTTGCGGAGGACGAC+GGG | 0.478528 | 2_4:-54563284 | None:intergenic |
| TGAACAGATGATGATAAAAG+TGG | 0.478868 | 2_4:-54563145 | None:intergenic |
| ATAGCTTTCTTGAGTTCAGT+TGG | 0.482895 | 2_4:-54566436 | None:intergenic |
| TAGCTTTCTTGAGTTCAGTT+GGG | 0.492776 | 2_4:-54566435 | None:intergenic |
| TGAGAAGCCTCAAGTGATCC+AGG | 0.497642 | 2_4:+54566609 | Msa0335460:CDS |
| TCAGCAGATCATTGGCAAGT+TGG | 0.510535 | 2_4:+54566660 | Msa0335460:CDS |
| GGGTTCCCAATCTTGTGAAA+CGG | 0.516848 | 2_4:-54563264 | None:intergenic |
| TCCCACCGCCGCTGCCAGGA+AGG | 0.517927 | 2_4:+54563307 | Msa0335460:CDS |
| TTGGGGTTGTTGCGTTGAGT+CGG | 0.518287 | 2_4:-54563207 | None:intergenic |
| TTTGTCATCCTTCCTGGCAG+CGG | 0.537196 | 2_4:-54563315 | None:intergenic |
| AGAAAGCTATAATGCAAGCC+AGG | 0.541759 | 2_4:+54566449 | Msa0335460:CDS |
| CACTGTTGAAGCTAATCTGA+CGG | 0.542129 | 2_4:+54566764 | Msa0335460:three_prime_UTR |
| AGCTTTCTTGCGGAGGACGA+CGG | 0.546703 | 2_4:-54563285 | None:intergenic |
| AATGATCTGCTGATTTGGAA+TGG | 0.551980 | 2_4:-54566650 | None:intergenic |
| AGCTATAATGCAAGCCAGGA+TGG | 0.555000 | 2_4:+54566453 | Msa0335460:CDS |
| CGGCGGTGGGAGCTTTCTTG+CGG | 0.555292 | 2_4:-54563295 | None:intergenic |
| CATGGTTTCGATATCGGCAC+CGG | 0.557535 | 2_4:-54563360 | None:intergenic |
| CTCTTGGTGCCAAACTGCGT+GGG | 0.558179 | 2_4:+54566689 | Msa0335460:CDS |
| TCAAACCATTCAACCATGGC+AGG | 0.558509 | 2_4:+54563239 | Msa0335460:exon |
| GTCATCCTTCCTGGCAGCGG+CGG | 0.565962 | 2_4:-54563312 | None:intergenic |
| GCATGTTCAATCCCTTGTCA+CGG | 0.566045 | 2_4:-54566930 | None:intergenic |
| CGGTGGGAGCTTTCTTGCGG+AGG | 0.580235 | 2_4:-54563292 | None:intergenic |
| ATCTGACGGCTATTATGTAG+TGG | 0.581619 | 2_4:+54566778 | Msa0335460:three_prime_UTR |
| TTGTGAAACGGGTCCTGCCA+TGG | 0.588651 | 2_4:-54563252 | None:intergenic |
| ATCGGCACCGGCACGACGAG+CGG | 0.589916 | 2_4:-54563348 | None:intergenic |
| GCTCTTGGTGCCAAACTGCG+TGG | 0.608518 | 2_4:+54566688 | Msa0335460:CDS |
| GAACATTAAGAGGCTTGATG+AGG | 0.616822 | 2_4:+54564879 | Msa0335460:CDS |
| TGATCCAGGAGTACGAGTCA+GGG | 0.620671 | 2_4:+54566623 | Msa0335460:CDS |
| TCGTACTCCTGGATCACTTG+AGG | 0.629262 | 2_4:-54566616 | None:intergenic |
| CATGCAAAAGCAACCAACCA+AGG | 0.651424 | 2_4:-54566819 | None:intergenic |
| GATGGACAAGAAGCTTACTC+AGG | 0.656852 | 2_4:+54566471 | Msa0335460:CDS |
| AAATTCAAACCATTCAACCA+TGG | 0.668938 | 2_4:+54563235 | Msa0335460:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTATTTTAATAAACGA+AGG | - | chr2_4:54563474-54563493 | None:intergenic | 10.0% |
| !!! | AAATAATAAATGTTTTTTCT+TGG | + | chr2_4:54563630-54563649 | Msa0335460:intron | 10.0% |
| !! | TTGTTTCAATATTATAAAAT+GGG | - | chr2_4:54564957-54564976 | None:intergenic | 10.0% |
| !! | ATTGTTGATATTTCTTATTA+GGG | + | chr2_4:54563549-54563568 | Msa0335460:intron | 15.0% |
| !!! | GTTGTTTCAATATTATAAAA+TGG | - | chr2_4:54564958-54564977 | None:intergenic | 15.0% |
| !! | AAAATTCATATTCTTTATCT+GGG | + | chr2_4:54565560-54565579 | Msa0335460:intron | 15.0% |
| !! | TTGTAGAAAAATATTTGATT+AGG | - | chr2_4:54566021-54566040 | None:intergenic | 15.0% |
| !! | TTCTATTATAAATTATGAAG+AGG | + | chr2_4:54566074-54566093 | Msa0335460:intron | 15.0% |
| !! | GATTAAAGAAATGAAAGAAA+AGG | - | chr2_4:54563406-54563425 | None:intergenic | 20.0% |
| !!! | TAATTTGTTAAATCACTGTT+TGG | + | chr2_4:54563526-54563545 | Msa0335460:intron | 20.0% |
| !! | GATTGTTGATATTTCTTATT+AGG | + | chr2_4:54563548-54563567 | Msa0335460:intron | 20.0% |
| !! | CTATTAATATGATGTGTTTA+AGG | + | chr2_4:54563693-54563712 | Msa0335460:intron | 20.0% |
| !!! | TATGTTTTCATATGTTATCT+TGG | + | chr2_4:54563993-54564012 | Msa0335460:intron | 20.0% |
| !! | AAAAAAAATAGTAGAGTAAC+CGG | - | chr2_4:54564931-54564950 | None:intergenic | 20.0% |
| !! | ATATCTTCCATAATTAATTG+TGG | + | chr2_4:54565382-54565401 | Msa0335460:intron | 20.0% |
| !! | ATGAATTCCACAATTAATTA+TGG | - | chr2_4:54565392-54565411 | None:intergenic | 20.0% |
| !! | GAAAATTCATATTCTTTATC+TGG | + | chr2_4:54565559-54565578 | Msa0335460:intron | 20.0% |
| !! | AAAAATATTTGATTAGGATG+GGG | - | chr2_4:54566015-54566034 | None:intergenic | 20.0% |
| !! | GAAAAATATTTGATTAGGAT+GGG | - | chr2_4:54566016-54566035 | None:intergenic | 20.0% |
| !! | AGAAAAATATTTGATTAGGA+TGG | - | chr2_4:54566017-54566036 | None:intergenic | 20.0% |
| !!! | TTTATATATTTTACTGTCCT+TGG | + | chr2_4:54566802-54566821 | Msa0335460:three_prime_UTR | 20.0% |
| !!! | ATGGTTTGAATTTGGTTTTT+GGG | - | chr2_4:54563228-54563247 | None:intergenic | 25.0% |
| !!! | AATGGTTTGAATTTGGTTTT+TGG | - | chr2_4:54563229-54563248 | None:intergenic | 25.0% |
| ! | TTTCAATAATCCAGAGTTTA+GGG | - | chr2_4:54564144-54564163 | None:intergenic | 25.0% |
| !! | TTTTCAATAATCCAGAGTTT+AGG | - | chr2_4:54564145-54564164 | None:intergenic | 25.0% |
| ! | TATAACACGAGATAAAAGAA+AGG | + | chr2_4:54564281-54564300 | Msa0335460:intron | 25.0% |
| !!! | GTTGTTTTCATAATCAATCT+TGG | + | chr2_4:54564468-54564487 | Msa0335460:intron | 25.0% |
| ! | CATTGAAGCATAACATAATT+TGG | + | chr2_4:54565225-54565244 | Msa0335460:intron | 25.0% |
| !! | TTCATATTCTTTTACTAGCT+TGG | + | chr2_4:54565407-54565426 | Msa0335460:intron | 25.0% |
| ! | TTTAATGTGGATATAACATG+TGG | + | chr2_4:54565431-54565450 | Msa0335460:intron | 25.0% |
| !! | ACAATATTCTTTTATTAGCC+TGG | + | chr2_4:54565460-54565479 | Msa0335460:intron | 25.0% |
| ! | TATAATAGAATTGCATTTGC+AGG | - | chr2_4:54566064-54566083 | None:intergenic | 25.0% |
| !! | ATGCATTTTTATAATTGCTG+TGG | - | chr2_4:54566115-54566134 | None:intergenic | 25.0% |
| ! | ACTTATGTATTTACAAAGAG+AGG | + | chr2_4:54566223-54566242 | Msa0335460:intron | 25.0% |
| ! | CTTATGTATTTACAAAGAGA+GGG | + | chr2_4:54566224-54566243 | Msa0335460:intron | 25.0% |
| ! | TTATGTATTTACAAAGAGAG+GGG | + | chr2_4:54566225-54566244 | Msa0335460:intron | 25.0% |
| ! | TCAAGACAAAAAAACATATG+TGG | - | chr2_4:54566533-54566552 | None:intergenic | 25.0% |
| ! | AAATGAGAAAGCTAATTTGA+TGG | + | chr2_4:54566715-54566734 | Msa0335460:exon | 25.0% |
| !! | TAGTTAGTAATTTTCATCTG+TGG | + | chr2_4:54566973-54566992 | Msa0335460:three_prime_UTR | 25.0% |
| TGAACAGATGATGATAAAAG+TGG | - | chr2_4:54563148-54563167 | None:intergenic | 30.0% | |
| !!! | TGGTTTGAATTTGGTTTTTG+GGG | - | chr2_4:54563227-54563246 | None:intergenic | 30.0% |
| ATGGTTGAATGGTTTGAATT+TGG | - | chr2_4:54563236-54563255 | None:intergenic | 30.0% | |
| AAATTCAAACCATTCAACCA+TGG | + | chr2_4:54563235-54563254 | Msa0335460:exon | 30.0% | |
| TTTCTTCATGGTTTCGATAT+CGG | - | chr2_4:54563369-54563388 | None:intergenic | 30.0% | |
| ! | TTCTTGGTGATAATCTTTCA+TGG | + | chr2_4:54563646-54563665 | Msa0335460:intron | 30.0% |
| ! | AATATGATGTGTTTAAGGCA+CGG | + | chr2_4:54563698-54563717 | Msa0335460:intron | 30.0% |
| TTGAATGTAATCACATACGA+CGG | + | chr2_4:54563849-54563868 | Msa0335460:intron | 30.0% | |
| AAAGTCCTACGTCAAATTTA+GGG | - | chr2_4:54564620-54564639 | None:intergenic | 30.0% | |
| ! | AAACAACATTTTGCAACTCT+TGG | + | chr2_4:54564971-54564990 | Msa0335460:intron | 30.0% |
| ! | AACAACATTTTGCAACTCTT+GGG | + | chr2_4:54564972-54564991 | Msa0335460:intron | 30.0% |
| ACCAACAAGATATATACACA+GGG | - | chr2_4:54565048-54565067 | None:intergenic | 30.0% | |
| AACCAACAAGATATATACAC+AGG | - | chr2_4:54565049-54565068 | None:intergenic | 30.0% | |
| ! | TTCTAAGTGTTGTCAAATAG+TGG | + | chr2_4:54565185-54565204 | Msa0335460:intron | 30.0% |
| ! | AAAAAGTTTTACTTCCACCA+AGG | - | chr2_4:54565273-54565292 | None:intergenic | 30.0% |
| TTACCTATAGGTGTATTACT+AGG | + | chr2_4:54565304-54565323 | Msa0335460:intron | 30.0% | |
| ! | TATTACTAGGTGCTAACTTT+TGG | + | chr2_4:54565317-54565336 | Msa0335460:intron | 30.0% |
| TGGAATATCATAAGACTGTT+TGG | + | chr2_4:54565344-54565363 | Msa0335460:intron | 30.0% | |
| ! | TTACTAGCTTGGATTTAATG+TGG | + | chr2_4:54565418-54565437 | Msa0335460:intron | 30.0% |
| AAATTGAGCAAAGTAAATCC+AGG | - | chr2_4:54565481-54565500 | None:intergenic | 30.0% | |
| ! | GGATTTACTTTGCTCAATTT+TGG | + | chr2_4:54565481-54565500 | Msa0335460:intron | 30.0% |
| GAATATCGTATGAAAGTTCA+TGG | + | chr2_4:54565503-54565522 | Msa0335460:intron | 30.0% | |
| ! | CCAAACTATGAAGACATTTT+TGG | - | chr2_4:54565693-54565712 | None:intergenic | 30.0% |
| CCAAAAATGTCTTCATAGTT+TGG | + | chr2_4:54565690-54565709 | Msa0335460:intron | 30.0% | |
| AATGTCCACCAATTATCAAA+GGG | - | chr2_4:54565762-54565781 | None:intergenic | 30.0% | |
| TAATGTCCACCAATTATCAA+AGG | - | chr2_4:54565763-54565782 | None:intergenic | 30.0% | |
| TGTTGTTAAAGGGAATACAT+GGG | - | chr2_4:54565928-54565947 | None:intergenic | 30.0% | |
| ! | TCTGAATCAGTGTTGTTAAA+GGG | - | chr2_4:54565938-54565957 | None:intergenic | 30.0% |
| AATGGATCAAAACCTAAAAC+TGG | - | chr2_4:54566295-54566314 | None:intergenic | 30.0% | |
| !! | ATCCTGACTAGAATTTTTAG+TGG | + | chr2_4:54566321-54566340 | Msa0335460:intron | 30.0% |
| TTCCACTAAAAATTCTAGTC+AGG | - | chr2_4:54566326-54566345 | None:intergenic | 30.0% | |
| GGTATGGCTCTTATATAAAA+GGG | - | chr2_4:54566357-54566376 | None:intergenic | 30.0% | |
| AGGTATGGCTCTTATATAAA+AGG | - | chr2_4:54566358-54566377 | None:intergenic | 30.0% | |
| !! | ATAAGCATTCAAGTTGAAAG+AGG | - | chr2_4:54566378-54566397 | None:intergenic | 30.0% |
| ! | TATATTTTACTGTCCTTGGT+TGG | + | chr2_4:54566806-54566825 | Msa0335460:three_prime_UTR | 30.0% |
| TCTGATAGAATCTTGAAATC+TGG | + | chr2_4:54567015-54567034 | Msa0335460:three_prime_UTR | 30.0% | |
| ! | TTCTAAGTATCGTTAACCCT+AGG | + | chr2_4:54563433-54563452 | Msa0335460:intron | 35.0% |
| GAACGAATTTCGAAATCCTA+GGG | - | chr2_4:54563452-54563471 | None:intergenic | 35.0% | |
| AAGCACTAGTCAGACTATTA+AGG | - | chr2_4:54564082-54564101 | None:intergenic | 35.0% | |
| TTGAATGTAACCACATGTGT+TGG | + | chr2_4:54564175-54564194 | Msa0335460:intron | 35.0% | |
| !!! | GCTGTTTTTGTAAGCTATCT+TGG | + | chr2_4:54564332-54564351 | Msa0335460:intron | 35.0% |
| AAGCACTTGTATGACTATGA+AGG | - | chr2_4:54564558-54564577 | None:intergenic | 35.0% | |
| ! | AATTTAGGGCATGTTTGGAT+TGG | - | chr2_4:54564606-54564625 | None:intergenic | 35.0% |
| CAAAGTCCTACGTCAAATTT+AGG | - | chr2_4:54564621-54564640 | None:intergenic | 35.0% | |
| CTAAATTTGACGTAGGACTT+TGG | + | chr2_4:54564619-54564638 | Msa0335460:intron | 35.0% | |
| GCACTTCATTGAACATTAAG+AGG | + | chr2_4:54564869-54564888 | Msa0335460:CDS | 35.0% | |
| ! | ACAACATTTTGCAACTCTTG+GGG | + | chr2_4:54564973-54564992 | Msa0335460:intron | 35.0% |
| TGTATGTATTCCTAATGTCC+TGG | + | chr2_4:54565017-54565036 | Msa0335460:intron | 35.0% | |
| TCCCTGTGTATATATCTTGT+TGG | + | chr2_4:54565044-54565063 | Msa0335460:intron | 35.0% | |
| ! | AGGTTAGTGCTGTTAAATAG+CGG | + | chr2_4:54565090-54565109 | Msa0335460:intron | 35.0% |
| !!! | AACTTACTGTTGTCGTTTTG+TGG | + | chr2_4:54565150-54565169 | Msa0335460:intron | 35.0% |
| ! | CTACTATTTTCTGCAATCCT+TGG | + | chr2_4:54565253-54565272 | Msa0335460:intron | 35.0% |
| TCACCATAGAAGTTACCTAT+AGG | + | chr2_4:54565292-54565311 | Msa0335460:intron | 35.0% | |
| ACACCTATAGGTAACTTCTA+TGG | - | chr2_4:54565298-54565317 | None:intergenic | 35.0% | |
| !!! | AGGTGCTAACTTTTGGAATT+TGG | + | chr2_4:54565324-54565343 | Msa0335460:intron | 35.0% |
| TCATATTCTTTATCTGGGCT+TGG | + | chr2_4:54565565-54565584 | Msa0335460:intron | 35.0% | |
| CATATTCTTTATCTGGGCTT+GGG | + | chr2_4:54565566-54565585 | Msa0335460:intron | 35.0% | |
| ATGTCCACCAATTATCAAAG+GGG | - | chr2_4:54565761-54565780 | None:intergenic | 35.0% | |
| !!! | GAAATTTTTTTGACAGCCTC+CGG | - | chr2_4:54565894-54565913 | None:intergenic | 35.0% |
| GTTGTTAAAGGGAATACATG+GGG | - | chr2_4:54565927-54565946 | None:intergenic | 35.0% | |
| ! | GTGTTGTTAAAGGGAATACA+TGG | - | chr2_4:54565929-54565948 | None:intergenic | 35.0% |
| ! | CTCTGAATCAGTGTTGTTAA+AGG | - | chr2_4:54565939-54565958 | None:intergenic | 35.0% |
| ATTATGAAGAGGTAGTAGTG+TGG | + | chr2_4:54566085-54566104 | Msa0335460:intron | 35.0% | |
| ! | TCTGCTGTTATACCAGTTTT+AGG | + | chr2_4:54566280-54566299 | Msa0335460:intron | 35.0% |
| TCTAGTCAGGATAGAGAAAA+TGG | - | chr2_4:54566313-54566332 | None:intergenic | 35.0% | |
| !! | CATTCAAGTTGAAAGAGGTA+TGG | - | chr2_4:54566373-54566392 | None:intergenic | 35.0% |
| GAATGCTTATACCTAGTAAC+TGG | + | chr2_4:54566388-54566407 | Msa0335460:intron | 35.0% | |
| TAGCTTTCTTGAGTTCAGTT+GGG | - | chr2_4:54566438-54566457 | None:intergenic | 35.0% | |
| ATAGCTTTCTTGAGTTCAGT+TGG | - | chr2_4:54566439-54566458 | None:intergenic | 35.0% | |
| !! | AATGATCTGCTGATTTGGAA+TGG | - | chr2_4:54566653-54566672 | None:intergenic | 35.0% |
| ATTCCAAATCAGCAGATCAT+TGG | + | chr2_4:54566652-54566671 | Msa0335460:CDS | 35.0% | |
| !!! | TGCAGCATTAAGTTTTGAAC+AGG | - | chr2_4:54566866-54566885 | None:intergenic | 35.0% |
| !! | CTTACTTTTAACCGTGACAA+GGG | + | chr2_4:54566919-54566938 | Msa0335460:three_prime_UTR | 35.0% |
| AGAAGCTCAACGTTTCTTCA+TGG | - | chr2_4:54563381-54563400 | None:intergenic | 40.0% | |
| GGAACGAATTTCGAAATCCT+AGG | - | chr2_4:54563453-54563472 | None:intergenic | 40.0% | |
| ! | AGTTTAGGGCATGATTGGAT+TGG | - | chr2_4:54564130-54564149 | None:intergenic | 40.0% |
| GTGTCAGTGCTAGAAAATGT+TGG | + | chr2_4:54564201-54564220 | Msa0335460:intron | 40.0% | |
| ! | TTATGATCGAAGGCATGTCT+GGG | - | chr2_4:54564229-54564248 | None:intergenic | 40.0% |
| ATGCCTTCGATCATAAGTGT+TGG | + | chr2_4:54564233-54564252 | Msa0335460:intron | 40.0% | |
| ! | CGTCAAATTTAGGGCATGTT+TGG | - | chr2_4:54564611-54564630 | None:intergenic | 40.0% |
| ACATGCCCTAAATTTGACGT+AGG | + | chr2_4:54564612-54564631 | Msa0335460:intron | 40.0% | |
| GACGTAGGACTTTGGATTAT+TGG | + | chr2_4:54564627-54564646 | Msa0335460:intron | 40.0% | |
| GAACATTAAGAGGCTTGATG+AGG | + | chr2_4:54564879-54564898 | Msa0335460:CDS | 40.0% | |
| ! | CAACATTTTGCAACTCTTGG+GGG | + | chr2_4:54564974-54564993 | Msa0335460:intron | 40.0% |
| ! | AACATTTTGCAACTCTTGGG+GGG | + | chr2_4:54564975-54564994 | Msa0335460:intron | 40.0% |
| TATATACACAGGGAAACACC+AGG | - | chr2_4:54565038-54565057 | None:intergenic | 40.0% | |
| ATTTAACAGCACTAACCTCC+AGG | - | chr2_4:54565088-54565107 | None:intergenic | 40.0% | |
| GCCATAGCACTATAGTATAG+CGG | + | chr2_4:54565122-54565141 | Msa0335460:intron | 40.0% | |
| TCCGCTATACTATAGTGCTA+TGG | - | chr2_4:54565126-54565145 | None:intergenic | 40.0% | |
| !!! | TGTTGTCGTTTTGTGGTACA+TGG | + | chr2_4:54565157-54565176 | Msa0335460:intron | 40.0% |
| ! | CTATTTTCTGCAATCCTTGG+TGG | + | chr2_4:54565256-54565275 | Msa0335460:intron | 40.0% |
| GCACCTAGTAATACACCTAT+AGG | - | chr2_4:54565310-54565329 | None:intergenic | 40.0% | |
| ! | CCAATTATCAAAGGGGGTAT+TGG | - | chr2_4:54565754-54565773 | None:intergenic | 40.0% |
| ! | CCAATACCCCCTTTGATAAT+TGG | + | chr2_4:54565751-54565770 | Msa0335460:intron | 40.0% |
| ! | ATACCCCCTTTGATAATTGG+TGG | + | chr2_4:54565754-54565773 | Msa0335460:intron | 40.0% |
| TGTCCACCAATTATCAAAGG+GGG | - | chr2_4:54565760-54565779 | None:intergenic | 40.0% | |
| GTCTAGATTAAGAGCAGTGT+TGG | + | chr2_4:54565783-54565802 | Msa0335460:intron | 40.0% | |
| !! | ATTAAGAGCAGTGTTGGCAA+TGG | + | chr2_4:54565789-54565808 | Msa0335460:intron | 40.0% |
| AAAGGGAATACATGGGGAAA+TGG | - | chr2_4:54565921-54565940 | None:intergenic | 40.0% | |
| AGAAAGCTATAATGCAAGCC+AGG | + | chr2_4:54566449-54566468 | Msa0335460:CDS | 40.0% | |
| ACATATGTGGTGAGTGAAGT+CGG | - | chr2_4:54566520-54566539 | None:intergenic | 40.0% | |
| ! | TTGCCAATGATCTGCTGATT+TGG | - | chr2_4:54566658-54566677 | None:intergenic | 40.0% |
| ! | TTGATGGCTGTGTATGTAGT+TGG | + | chr2_4:54566731-54566750 | Msa0335460:three_prime_UTR | 40.0% |
| CACTGTTGAAGCTAATCTGA+CGG | + | chr2_4:54566764-54566783 | Msa0335460:three_prime_UTR | 40.0% | |
| ATCTGACGGCTATTATGTAG+TGG | + | chr2_4:54566778-54566797 | Msa0335460:three_prime_UTR | 40.0% | |
| TTTGAACAGGTGAAAGCTTC+AGG | - | chr2_4:54566853-54566872 | None:intergenic | 40.0% | |
| !! | GCTTACTTTTAACCGTGACA+AGG | + | chr2_4:54566918-54566937 | Msa0335460:three_prime_UTR | 40.0% |
| TGTTGCGTTGAGTCGGTATA+GGG | - | chr2_4:54563203-54563222 | None:intergenic | 45.0% | |
| TTGTTGCGTTGAGTCGGTAT+AGG | - | chr2_4:54563204-54563223 | None:intergenic | 45.0% | |
| TCAAACCATTCAACCATGGC+AGG | + | chr2_4:54563239-54563258 | Msa0335460:exon | 45.0% | |
| AGGACCCGTTTCACAAGATT+GGG | + | chr2_4:54563259-54563278 | Msa0335460:CDS | 45.0% | |
| GGTTCCCAATCTTGTGAAAC+GGG | - | chr2_4:54563266-54563285 | None:intergenic | 45.0% | |
| GGGTTCCCAATCTTGTGAAA+CGG | - | chr2_4:54563267-54563286 | None:intergenic | 45.0% | |
| ! | GATGTGTTTAAGGCACGGTA+TGG | + | chr2_4:54563703-54563722 | Msa0335460:intron | 45.0% |
| TCCAATCATGCCCTAAACTC+TGG | + | chr2_4:54564131-54564150 | Msa0335460:intron | 45.0% | |
| ! | TCCAGAGTTTAGGGCATGAT+TGG | - | chr2_4:54564135-54564154 | None:intergenic | 45.0% |
| ! | TATGATCGAAGGCATGTCTG+GGG | - | chr2_4:54564228-54564247 | None:intergenic | 45.0% |
| ! | CTTATGATCGAAGGCATGTC+TGG | - | chr2_4:54564230-54564249 | None:intergenic | 45.0% |
| GCACCAACACTTATGATCGA+AGG | - | chr2_4:54564239-54564258 | None:intergenic | 45.0% | |
| ! | ATGCCTTCGATCAGAAGTGT+TGG | + | chr2_4:54564372-54564391 | Msa0335460:intron | 45.0% |
| !!! | CACTGATTCGCTCCATTTTC+TGG | + | chr2_4:54564773-54564792 | Msa0335460:intron | 45.0% |
| TCAGCACTCTGACCAGAAAA+TGG | - | chr2_4:54564788-54564807 | None:intergenic | 45.0% | |
| !! | GTCAGAGTGCTGATTGTGTT+GGG | + | chr2_4:54564795-54564814 | Msa0335460:intron | 45.0% |
| ! | GAATTTAGCTCGTGAGTCTC+CGG | + | chr2_4:54564909-54564928 | Msa0335460:intron | 45.0% |
| !! | GTGTTCATATGGCGGAGTTT+TGG | - | chr2_4:54565822-54565841 | None:intergenic | 45.0% |
| GGCATTCCTTCTCAAATTGC+CGG | + | chr2_4:54565872-54565891 | Msa0335460:intron | 45.0% | |
| ATTCCTTCTCAAATTGCCGG+AGG | + | chr2_4:54565875-54565894 | Msa0335460:intron | 45.0% | |
| GCATTTGCAGGCAACAAGAT+AGG | - | chr2_4:54566052-54566071 | None:intergenic | 45.0% | |
| CGCAAACAAGTCCAGTTACT+AGG | - | chr2_4:54566402-54566421 | None:intergenic | 45.0% | |
| ! | GACTTGTTTGCGCAGATGAT+CGG | + | chr2_4:54566410-54566429 | Msa0335460:intron | 45.0% |
| ACTTGTTTGCGCAGATGATC+GGG | + | chr2_4:54566411-54566430 | Msa0335460:intron | 45.0% | |
| AGCTATAATGCAAGCCAGGA+TGG | + | chr2_4:54566453-54566472 | Msa0335460:CDS | 45.0% | |
| AGTAAGCTTCTTGTCCATCC+TGG | - | chr2_4:54566470-54566489 | None:intergenic | 45.0% | |
| GATGGACAAGAAGCTTACTC+AGG | + | chr2_4:54566471-54566490 | Msa0335460:CDS | 45.0% | |
| TCAGCAGATCATTGGCAAGT+TGG | + | chr2_4:54566660-54566679 | Msa0335460:CDS | 45.0% | |
| TCATTTCTTCCCACGCAGTT+TGG | - | chr2_4:54566701-54566720 | None:intergenic | 45.0% | |
| CATGCAAAAGCAACCAACCA+AGG | - | chr2_4:54566822-54566841 | None:intergenic | 45.0% | |
| GCATGTTCAATCCCTTGTCA+CGG | - | chr2_4:54566933-54566952 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTTTAAATTATTGT+CGG | - | chr2_4:54563807-54563826 | None:intergenic | 5.0% |
| TTGGGGTTGTTGCGTTGAGT+CGG | - | chr2_4:54563210-54563229 | None:intergenic | 50.0% | |
| CAGGACCCGTTTCACAAGAT+TGG | + | chr2_4:54563258-54563277 | Msa0335460:CDS | 50.0% | |
| TTTGTCATCCTTCCTGGCAG+CGG | - | chr2_4:54563318-54563337 | None:intergenic | 50.0% | |
| ! | GACAGCTTTGTCATCCTTCC+TGG | - | chr2_4:54563324-54563343 | None:intergenic | 50.0% |
| CATGGTTTCGATATCGGCAC+CGG | - | chr2_4:54563363-54563382 | None:intergenic | 50.0% | |
| ! | ACGCCTTCGATCAGAAGTGT+CGG | + | chr2_4:54563902-54563921 | Msa0335460:intron | 50.0% |
| CTGACACACACCAACACATG+TGG | - | chr2_4:54564188-54564207 | None:intergenic | 50.0% | |
| GCTCCAACACTTCTGATCGA+AGG | - | chr2_4:54564378-54564397 | None:intergenic | 50.0% | |
| !! | GGTCAGAGTGCTGATTGTGT+TGG | + | chr2_4:54564794-54564813 | Msa0335460:intron | 50.0% |
| CAGGGAAACACCAGGACATT+AGG | - | chr2_4:54565030-54565049 | None:intergenic | 50.0% | |
| ! | TTGAAGCATGCGAGTTGACC+TGG | + | chr2_4:54565067-54565086 | Msa0335460:intron | 50.0% |
| ATCTGGGCTTGGGATTACTG+TGG | + | chr2_4:54565576-54565595 | Msa0335460:intron | 50.0% | |
| !! | AAGAGCAGTGTTGGCAATGG+TGG | + | chr2_4:54565792-54565811 | Msa0335460:intron | 50.0% |
| TGAGAAGCCTCAAGTGATCC+AGG | + | chr2_4:54566609-54566628 | Msa0335460:CDS | 50.0% | |
| TCGTACTCCTGGATCACTTG+AGG | - | chr2_4:54566619-54566638 | None:intergenic | 50.0% | |
| ! | TGATCCAGGAGTACGAGTCA+GGG | + | chr2_4:54566623-54566642 | Msa0335460:CDS | 50.0% |
| TTGTGAAACGGGTCCTGCCA+TGG | - | chr2_4:54563255-54563274 | None:intergenic | 55.0% | |
| AGCTTTCTTGCGGAGGACGA+CGG | - | chr2_4:54563288-54563307 | None:intergenic | 55.0% | |
| ! | CTTCTGATCGAAGGCGTGTC+TGG | - | chr2_4:54563899-54563918 | None:intergenic | 55.0% |
| ! | GCACCGACACTTCTGATCGA+AGG | - | chr2_4:54563908-54563927 | None:intergenic | 55.0% |
| ! | AAGCATGCGAGTTGACCTGG+AGG | + | chr2_4:54565070-54565089 | Msa0335460:intron | 55.0% |
| !! | GCAGTGTTGGCAATGGTGGA+AGG | + | chr2_4:54565796-54565815 | Msa0335460:intron | 55.0% |
| TCCGCCATATGAACACGCCA+TGG | + | chr2_4:54565826-54565845 | Msa0335460:intron | 55.0% | |
| GCCATGGCGTGTTCATATGG+CGG | - | chr2_4:54565830-54565849 | None:intergenic | 55.0% | |
| GCCATATGAACACGCCATGG+CGG | + | chr2_4:54565829-54565848 | Msa0335460:intron | 55.0% | |
| !! | GCCTATGGTGCTGCTATGGT+GGG | + | chr2_4:54565851-54565870 | Msa0335460:intron | 55.0% |
| CAGCCTCCGGCAATTTGAGA+AGG | - | chr2_4:54565881-54565900 | None:intergenic | 55.0% | |
| ! | GTGATCCAGGAGTACGAGTC+AGG | + | chr2_4:54566622-54566641 | Msa0335460:CDS | 55.0% |
| ! | CTTTCCCTGACTCGTACTCC+TGG | - | chr2_4:54566630-54566649 | None:intergenic | 55.0% |
| ! | GGCAAGTTGGAGAGAGCTCT+TGG | + | chr2_4:54566673-54566692 | Msa0335460:CDS | 55.0% |
| !! | CTCTTGGTGCCAAACTGCGT+GGG | + | chr2_4:54566689-54566708 | Msa0335460:CDS | 55.0% |
| CGGGTCCTGCCATGGTTGAA+TGG | - | chr2_4:54563247-54563266 | None:intergenic | 60.0% | |
| GCTTTCTTGCGGAGGACGAC+GGG | - | chr2_4:54563287-54563306 | None:intergenic | 60.0% | |
| GCCGCCATGGCGTGTTCATA+TGG | - | chr2_4:54565833-54565852 | None:intergenic | 60.0% | |
| !! | GGCCTATGGTGCTGCTATGG+TGG | + | chr2_4:54565850-54565869 | Msa0335460:intron | 60.0% |
| GCCCACCATAGCAGCACCAT+AGG | - | chr2_4:54565855-54565874 | None:intergenic | 60.0% | |
| !! | GCTCTTGGTGCCAAACTGCG+TGG | + | chr2_4:54566688-54566707 | Msa0335460:CDS | 60.0% |
| CGGTGGGAGCTTTCTTGCGG+AGG | - | chr2_4:54563295-54563314 | None:intergenic | 65.0% | |
| CGGCGGTGGGAGCTTTCTTG+CGG | - | chr2_4:54563298-54563317 | None:intergenic | 65.0% | |
| GTCATCCTTCCTGGCAGCGG+CGG | - | chr2_4:54563315-54563334 | None:intergenic | 65.0% | |
| GAACACGCCATGGCGGCCTA+TGG | + | chr2_4:54565836-54565855 | Msa0335460:intron | 65.0% | |
| AGCAGCACCATAGGCCGCCA+TGG | - | chr2_4:54565846-54565865 | None:intergenic | 65.0% | |
| !! | GGCGGCCTATGGTGCTGCTA+TGG | + | chr2_4:54565847-54565866 | Msa0335460:intron | 65.0% |
| TCCTTCCTGGCAGCGGCGGT+GGG | - | chr2_4:54563311-54563330 | None:intergenic | 70.0% | |
| ATCCTTCCTGGCAGCGGCGG+TGG | - | chr2_4:54563312-54563331 | None:intergenic | 70.0% | |
| GTCAACGCCGCTCGTCGTGC+CGG | + | chr2_4:54563341-54563360 | Msa0335460:CDS | 70.0% | |
| !! | ATCGGCACCGGCACGACGAG+CGG | - | chr2_4:54563351-54563370 | None:intergenic | 70.0% |
| AAGCTCCCACCGCCGCTGCC+AGG | + | chr2_4:54563303-54563322 | Msa0335460:CDS | 75.0% | |
| TCCCACCGCCGCTGCCAGGA+AGG | + | chr2_4:54563307-54563326 | Msa0335460:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 54563134 | 54567064 | 54563134 | ID=Msa0335460;Name=Msa0335460 |
| chr2_4 | mRNA | 54563134 | 54567064 | 54563134 | ID=Msa0335460-mRNA-1;Parent=Msa0335460;Name=Msa0335460-mRNA-1;_AED=0.10;_eAED=0.10;_QI=120|1|1|1|1|1|4|344|140 |
| chr2_4 | exon | 54563134 | 54563389 | 54563134 | ID=Msa0335460-mRNA-1:exon:16478;Parent=Msa0335460-mRNA-1 |
| chr2_4 | exon | 54564836 | 54564919 | 54564836 | ID=Msa0335460-mRNA-1:exon:16479;Parent=Msa0335460-mRNA-1 |
| chr2_4 | exon | 54566425 | 54566507 | 54566425 | ID=Msa0335460-mRNA-1:exon:16480;Parent=Msa0335460-mRNA-1 |
| chr2_4 | exon | 54566601 | 54567064 | 54566601 | ID=Msa0335460-mRNA-1:exon:16481;Parent=Msa0335460-mRNA-1 |
| chr2_4 | five_prime_UTR | 54563134 | 54563253 | 54563134 | ID=Msa0335460-mRNA-1:five_prime_utr;Parent=Msa0335460-mRNA-1 |
| chr2_4 | CDS | 54563254 | 54563389 | 54563254 | ID=Msa0335460-mRNA-1:cds;Parent=Msa0335460-mRNA-1 |
| chr2_4 | CDS | 54564836 | 54564919 | 54564836 | ID=Msa0335460-mRNA-1:cds;Parent=Msa0335460-mRNA-1 |
| chr2_4 | CDS | 54566425 | 54566507 | 54566425 | ID=Msa0335460-mRNA-1:cds;Parent=Msa0335460-mRNA-1 |
| chr2_4 | CDS | 54566601 | 54566720 | 54566601 | ID=Msa0335460-mRNA-1:cds;Parent=Msa0335460-mRNA-1 |
| chr2_4 | three_prime_UTR | 54566721 | 54567064 | 54566721 | ID=Msa0335460-mRNA-1:three_prime_utr;Parent=Msa0335460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
