Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335900 | XP_024631624.1 | 97.106 | 311 | 6 | 2 | 1 | 310 | 1 | 309 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335900 | sp|Q9SGD1|ZWIP3_ARATH | 57.784 | 334 | 96 | 12 | 10 | 300 | 5 | 336 | 5.29e-116 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0335900 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335900 | MtrunA17_Chr2g0321291 | 97.106 | 311 | 6 | 2 | 1 | 310 | 1 | 309 | 0.0 | 623 |
| Msa0335900 | MtrunA17_Chr4g0026521 | 65.472 | 307 | 84 | 6 | 6 | 308 | 5 | 293 | 7.28e-127 | 363 |
| Msa0335900 | MtrunA17_Chr7g0258011 | 61.789 | 246 | 81 | 4 | 73 | 306 | 103 | 347 | 3.23e-108 | 318 |
| Msa0335900 | MtrunA17_Chr1g0173841 | 60.241 | 249 | 76 | 5 | 78 | 306 | 141 | 386 | 3.03e-105 | 312 |
| Msa0335900 | MtrunA17_Chr8g0352011 | 64.000 | 225 | 64 | 3 | 82 | 296 | 110 | 327 | 4.53e-103 | 305 |
| Msa0335900 | MtrunA17_Chr2g0328921 | 68.473 | 203 | 54 | 2 | 84 | 282 | 90 | 286 | 2.47e-101 | 300 |
| Msa0335900 | MtrunA17_Chr5g0422571 | 61.883 | 223 | 69 | 5 | 74 | 295 | 55 | 262 | 6.27e-98 | 290 |
| Msa0335900 | MtrunA17_Chr4g0053341 | 57.317 | 246 | 88 | 2 | 46 | 290 | 1 | 230 | 2.11e-94 | 279 |
| Msa0335900 | MtrunA17_Chr1g0198651 | 77.707 | 157 | 32 | 1 | 131 | 284 | 99 | 255 | 3.81e-94 | 281 |
| Msa0335900 | MtrunA17_Chr1g0200421 | 40.506 | 158 | 80 | 7 | 141 | 289 | 245 | 397 | 2.12e-27 | 111 |
| Msa0335900 | MtrunA17_Chr2g0320341 | 35.220 | 159 | 95 | 4 | 134 | 285 | 231 | 388 | 9.42e-23 | 97.4 |
| Msa0335900 | MtrunA17_Chr8g0382121 | 37.931 | 145 | 85 | 4 | 149 | 289 | 127 | 270 | 1.59e-21 | 92.8 |
| Msa0335900 | MtrunA17_Chr4g0029521 | 38.129 | 139 | 77 | 4 | 141 | 278 | 61 | 191 | 2.75e-20 | 90.9 |
| Msa0335900 | MtrunA17_Chr2g0326381 | 35.616 | 146 | 85 | 4 | 134 | 278 | 48 | 185 | 1.11e-19 | 88.6 |
| Msa0335900 | MtrunA17_Chr3g0123941 | 36.416 | 173 | 93 | 7 | 149 | 308 | 139 | 307 | 3.65e-19 | 86.3 |
| Msa0335900 | MtrunA17_Chr7g0263941 | 32.973 | 185 | 104 | 7 | 134 | 310 | 50 | 222 | 3.84e-19 | 87.0 |
| Msa0335900 | MtrunA17_Chr1g0151351 | 36.170 | 141 | 81 | 4 | 139 | 278 | 62 | 194 | 4.05e-19 | 87.4 |
| Msa0335900 | MtrunA17_Chr1g0181381 | 34.247 | 146 | 87 | 4 | 134 | 278 | 54 | 191 | 4.42e-19 | 87.4 |
| Msa0335900 | MtrunA17_Chr1g0185121 | 35.374 | 147 | 84 | 5 | 134 | 278 | 56 | 193 | 9.53e-19 | 86.3 |
| Msa0335900 | MtrunA17_Chr1g0162971 | 36.429 | 140 | 77 | 5 | 141 | 278 | 64 | 193 | 2.38e-18 | 85.1 |
| Msa0335900 | MtrunA17_Chr7g0268961 | 35.252 | 139 | 80 | 4 | 141 | 278 | 45 | 174 | 2.52e-18 | 85.1 |
| Msa0335900 | MtrunA17_Chr1g0210821 | 34.694 | 147 | 84 | 5 | 134 | 278 | 60 | 196 | 2.72e-18 | 85.1 |
| Msa0335900 | MtrunA17_Chr1g0191991 | 36.054 | 147 | 82 | 6 | 134 | 278 | 79 | 215 | 2.73e-18 | 85.1 |
| Msa0335900 | MtrunA17_Chr2g0324991 | 35.211 | 142 | 82 | 5 | 134 | 273 | 8 | 141 | 3.14e-18 | 80.1 |
| Msa0335900 | MtrunA17_Chr1g0163001 | 34.694 | 147 | 84 | 5 | 134 | 278 | 59 | 195 | 3.83e-18 | 84.7 |
| Msa0335900 | MtrunA17_Chr1g0199101 | 34.694 | 147 | 84 | 5 | 134 | 278 | 63 | 199 | 4.10e-18 | 84.7 |
| Msa0335900 | MtrunA17_Chr8g0342421 | 35.714 | 140 | 78 | 6 | 141 | 278 | 85 | 214 | 4.72e-18 | 84.3 |
| Msa0335900 | MtrunA17_Chr8g0373541 | 33.742 | 163 | 94 | 6 | 118 | 278 | 35 | 185 | 7.92e-18 | 84.0 |
| Msa0335900 | MtrunA17_Chr2g0330171 | 34.694 | 147 | 84 | 6 | 134 | 278 | 62 | 198 | 1.32e-17 | 82.8 |
| Msa0335900 | MtrunA17_Chr4g0040571 | 32.877 | 146 | 88 | 4 | 134 | 278 | 55 | 191 | 9.82e-17 | 80.5 |
| Msa0335900 | MtrunA17_Chr3g0141431 | 33.571 | 140 | 83 | 4 | 139 | 276 | 43 | 174 | 1.97e-16 | 79.3 |
| Msa0335900 | MtrunA17_Chr6g0479921 | 30.496 | 141 | 82 | 5 | 139 | 274 | 50 | 179 | 4.75e-12 | 66.2 |
| Msa0335900 | MtrunA17_Chr8g0375521 | 30.216 | 139 | 86 | 5 | 139 | 274 | 48 | 178 | 5.74e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335900 | AT1G08290.1 | 57.784 | 334 | 96 | 12 | 10 | 300 | 5 | 336 | 5.38e-117 | 340 |
| Msa0335900 | AT1G51220.1 | 53.952 | 291 | 91 | 5 | 19 | 284 | 43 | 315 | 4.18e-103 | 305 |
| Msa0335900 | AT3G20880.1 | 62.719 | 228 | 68 | 2 | 84 | 294 | 176 | 403 | 1.36e-100 | 301 |
| Msa0335900 | AT3G57670.1 | 58.776 | 245 | 68 | 4 | 84 | 296 | 122 | 365 | 5.13e-100 | 299 |
| Msa0335900 | AT1G13290.1 | 65.347 | 202 | 52 | 4 | 84 | 283 | 54 | 239 | 1.70e-93 | 280 |
| Msa0335900 | AT1G34790.1 | 60.090 | 223 | 80 | 3 | 84 | 303 | 83 | 299 | 4.85e-93 | 278 |
| Msa0335900 | AT1G34370.3 | 39.241 | 158 | 84 | 5 | 141 | 289 | 28 | 182 | 2.44e-28 | 111 |
| Msa0335900 | AT1G34370.2 | 39.241 | 158 | 84 | 5 | 141 | 289 | 238 | 392 | 8.62e-28 | 112 |
| Msa0335900 | AT1G34370.1 | 39.241 | 158 | 84 | 5 | 141 | 289 | 238 | 392 | 8.62e-28 | 112 |
| Msa0335900 | AT5G22890.1 | 39.735 | 151 | 83 | 5 | 141 | 284 | 211 | 360 | 1.41e-24 | 102 |
| Msa0335900 | AT5G03150.1 | 36.691 | 139 | 79 | 4 | 141 | 278 | 76 | 206 | 3.57e-20 | 90.9 |
| Msa0335900 | AT1G55110.3 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 8.82e-19 | 86.7 |
| Msa0335900 | AT1G55110.1 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 8.82e-19 | 86.7 |
| Msa0335900 | AT1G55110.2 | 35.915 | 142 | 80 | 5 | 139 | 278 | 84 | 216 | 8.82e-19 | 86.7 |
| Msa0335900 | AT5G66730.1 | 35.915 | 142 | 79 | 5 | 139 | 278 | 53 | 184 | 1.29e-18 | 86.7 |
| Msa0335900 | AT5G60470.1 | 37.410 | 139 | 78 | 4 | 141 | 278 | 58 | 188 | 1.57e-18 | 85.9 |
| Msa0335900 | AT5G60470.3 | 37.410 | 139 | 78 | 4 | 141 | 278 | 63 | 193 | 1.62e-18 | 85.9 |
| Msa0335900 | AT5G60470.2 | 37.410 | 139 | 78 | 4 | 141 | 278 | 67 | 197 | 1.65e-18 | 85.9 |
| Msa0335900 | AT2G02080.1 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 1.91e-18 | 85.9 |
| Msa0335900 | AT2G02080.4 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 1.91e-18 | 85.9 |
| Msa0335900 | AT2G02080.5 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 1.91e-18 | 85.9 |
| Msa0335900 | AT2G02080.3 | 35.461 | 141 | 81 | 4 | 139 | 278 | 75 | 206 | 1.91e-18 | 85.9 |
| Msa0335900 | AT4G02670.1 | 35.616 | 146 | 85 | 4 | 134 | 278 | 69 | 206 | 2.20e-18 | 85.1 |
| Msa0335900 | AT4G02670.2 | 34.932 | 146 | 86 | 4 | 134 | 278 | 71 | 208 | 2.24e-18 | 85.1 |
| Msa0335900 | AT3G45260.2 | 36.691 | 139 | 79 | 4 | 141 | 278 | 62 | 192 | 2.67e-18 | 85.5 |
| Msa0335900 | AT3G45260.1 | 36.691 | 139 | 79 | 4 | 141 | 278 | 62 | 192 | 2.67e-18 | 85.5 |
| Msa0335900 | AT2G02070.2 | 34.932 | 146 | 85 | 4 | 134 | 278 | 68 | 204 | 3.63e-18 | 85.5 |
| Msa0335900 | AT2G02070.1 | 34.932 | 146 | 85 | 4 | 134 | 278 | 68 | 204 | 3.63e-18 | 85.5 |
| Msa0335900 | AT2G02080.6 | 36.567 | 134 | 75 | 4 | 146 | 278 | 5 | 129 | 4.99e-18 | 84.3 |
| Msa0335900 | AT2G02080.2 | 36.567 | 134 | 75 | 4 | 146 | 278 | 5 | 129 | 4.99e-18 | 84.3 |
| Msa0335900 | AT1G14580.1 | 34.247 | 146 | 86 | 4 | 134 | 278 | 69 | 205 | 6.23e-18 | 84.3 |
| Msa0335900 | AT1G14580.2 | 34.247 | 146 | 86 | 4 | 134 | 278 | 69 | 205 | 6.23e-18 | 84.3 |
| Msa0335900 | AT1G14580.3 | 34.247 | 146 | 86 | 4 | 134 | 278 | 83 | 219 | 6.42e-18 | 84.3 |
| Msa0335900 | AT1G03840.2 | 34.932 | 146 | 85 | 5 | 134 | 278 | 55 | 191 | 1.38e-17 | 83.6 |
| Msa0335900 | AT1G03840.1 | 34.932 | 146 | 85 | 5 | 134 | 278 | 57 | 193 | 1.49e-17 | 83.2 |
| Msa0335900 | AT5G44160.1 | 33.813 | 139 | 82 | 4 | 141 | 278 | 60 | 189 | 1.52e-17 | 83.2 |
| Msa0335900 | AT5G44160.2 | 33.813 | 139 | 82 | 4 | 141 | 278 | 21 | 150 | 1.67e-17 | 82.8 |
| Msa0335900 | AT3G13810.4 | 34.247 | 146 | 87 | 4 | 134 | 278 | 86 | 223 | 2.43e-17 | 82.8 |
| Msa0335900 | AT3G13810.1 | 34.247 | 146 | 87 | 4 | 134 | 278 | 86 | 223 | 2.43e-17 | 82.8 |
| Msa0335900 | AT3G50700.1 | 34.247 | 146 | 86 | 4 | 134 | 278 | 50 | 186 | 2.78e-17 | 82.4 |
| Msa0335900 | AT3G13810.5 | 34.247 | 146 | 87 | 4 | 134 | 278 | 81 | 218 | 2.80e-17 | 82.4 |
| Msa0335900 | AT3G13810.2 | 34.247 | 146 | 87 | 4 | 134 | 278 | 87 | 224 | 2.86e-17 | 82.4 |
| Msa0335900 | AT3G13810.3 | 34.247 | 146 | 87 | 4 | 134 | 278 | 73 | 210 | 2.97e-17 | 82.4 |
| Msa0335900 | AT3G13810.6 | 34.247 | 146 | 87 | 4 | 134 | 278 | 67 | 204 | 3.22e-17 | 82.4 |
| Msa0335900 | AT1G68130.1 | 31.655 | 139 | 84 | 5 | 139 | 274 | 62 | 192 | 1.54e-12 | 68.2 |
| Msa0335900 | AT1G25250.1 | 29.710 | 138 | 89 | 4 | 139 | 274 | 31 | 162 | 2.06e-12 | 67.4 |
| Msa0335900 | AT1G25250.3 | 30.216 | 139 | 87 | 5 | 139 | 274 | 54 | 185 | 2.71e-12 | 67.4 |
| Msa0335900 | AT2G01940.1 | 30.216 | 139 | 86 | 5 | 139 | 274 | 65 | 195 | 4.81e-11 | 63.5 |
Find 59 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAAGCATTTGCTGTTAA+AGG | 0.122625 | 2_4:-55130917 | Msa0335900:CDS |
| TTGAGCCATTCAATGAAATT+TGG | 0.134972 | 2_4:+55134179 | None:intergenic |
| TGAATATATTTCACAAATCT+AGG | 0.278468 | 2_4:-55134281 | Msa0335900:five_prime_UTR |
| CATCCCATGGTCGTCCTCAT+AGG | 0.283767 | 2_4:+55134049 | None:intergenic |
| AGTTTGTGTTGATGAGTTAA+AGG | 0.287140 | 2_4:+55134119 | None:intergenic |
| TGAGCCATTCAATGAAATTT+GGG | 0.289191 | 2_4:+55134180 | None:intergenic |
| TCCCCACTTCCTTCTCTTGA+AGG | 0.294915 | 2_4:-55130779 | Msa0335900:CDS |
| AAAGGACCAGACTCACTTAA+AGG | 0.304674 | 2_4:-55131103 | Msa0335900:CDS |
| GATGACGAGAGTGAGGAATT+AGG | 0.313659 | 2_4:+55134152 | None:intergenic |
| GAGAAAGAATGCAGCAATAC+TGG | 0.341279 | 2_4:-55130746 | Msa0335900:CDS |
| AAACCCCAAATTTCATTGAA+TGG | 0.361241 | 2_4:-55134184 | Msa0335900:CDS |
| CATATTGTTGTATCTATTGA+AGG | 0.375727 | 2_4:+55133770 | None:intergenic |
| TGAACATGATGAGAAGAATA+AGG | 0.376871 | 2_4:-55133934 | Msa0335900:CDS |
| CATTTGCTGTTAAAGGTGAT+TGG | 0.376909 | 2_4:-55130910 | Msa0335900:CDS |
| GCTCATGCATGATCATGATA+TGG | 0.396038 | 2_4:-55130704 | Msa0335900:exon |
| ATTGAAGGTCTTACTGCATA+TGG | 0.402051 | 2_4:+55133785 | None:intergenic |
| TTAAGGAGGAGAGAAGGTTT+TGG | 0.404432 | 2_4:-55133857 | Msa0335900:CDS |
| TGTGTTCCTTTAAGTGAGTC+TGG | 0.407901 | 2_4:+55131097 | None:intergenic |
| AAAGATCATGTTAGATCCTT+CGG | 0.408333 | 2_4:-55130812 | Msa0335900:CDS |
| ACTCCTGCTCAGATTCTTGT+TGG | 0.408478 | 2_4:-55133828 | Msa0335900:CDS |
| GGCTTAATTCCACTAGAGAT+TGG | 0.432908 | 2_4:+55134071 | None:intergenic |
| CAATGAAATTTGGGGTTTGA+AGG | 0.444233 | 2_4:+55134189 | None:intergenic |
| ATCTCTCTCTAGAATTAAGA+TGG | 0.445216 | 2_4:-55134252 | Msa0335900:exon |
| TCCAAGAGCAAAACCATTGA+AGG | 0.445743 | 2_4:-55131008 | Msa0335900:CDS |
| AGAGTTCTGAAATCCTTCAA+TGG | 0.482663 | 2_4:+55130995 | None:intergenic |
| CATGTTAGATCCTTCGGAAA+AGG | 0.486223 | 2_4:-55130806 | Msa0335900:CDS |
| GTGTTTAAAATCTGAACCAC+AGG | 0.489686 | 2_4:+55130847 | None:intergenic |
| CCATGTTATTGTTGTGCTCA+CGG | 0.500524 | 2_4:-55131052 | Msa0335900:CDS |
| TGAAGTAAAAGAAGAGAAGG+TGG | 0.512589 | 2_4:-55134012 | Msa0335900:CDS |
| GAATATATTTCACAAATCTA+GGG | 0.517022 | 2_4:-55134280 | Msa0335900:five_prime_UTR |
| GATTTGTGCGGTTGAAATTG+AGG | 0.523210 | 2_4:-55130623 | Msa0335900:three_prime_UTR |
| TGATGAGTTAAAGGCGATGA+AGG | 0.525454 | 2_4:+55134128 | None:intergenic |
| ATCCCATGGTCGTCCTCATA+GGG | 0.533889 | 2_4:+55134050 | None:intergenic |
| TCTTCAAATCCTTCAAGAGA+AGG | 0.545629 | 2_4:+55130770 | None:intergenic |
| ATCCTTCAAGAGAAGGAAGT+GGG | 0.549829 | 2_4:+55130777 | None:intergenic |
| CACAACCAGCAGCAATGCTA+AGG | 0.552239 | 2_4:-55131078 | Msa0335900:CDS |
| ACTCATTACAAAAGAAAGCA+TGG | 0.557148 | 2_4:-55130968 | Msa0335900:CDS |
| TCAGATTCACATCCTACGTT+AGG | 0.564487 | 2_4:+55133957 | None:intergenic |
| GTGACTGTGGCTTTGCACAT+TGG | 0.568567 | 2_4:-55133984 | Msa0335900:CDS |
| ACAAGAATCTGAGCAGGAGT+TGG | 0.574558 | 2_4:+55133831 | None:intergenic |
| GGTAGCCTTAGCATTGCTGC+TGG | 0.575071 | 2_4:+55131073 | None:intergenic |
| GGTCCAACAAGAATCTGAGC+AGG | 0.582655 | 2_4:+55133825 | None:intergenic |
| TAGTGGAATTAAGCCCTATG+AGG | 0.588258 | 2_4:-55134063 | Msa0335900:CDS |
| CAATAGATACAACAATATGC+AGG | 0.595484 | 2_4:-55133766 | Msa0335900:intron |
| AAGCCCTATGAGGACGACCA+TGG | 0.597994 | 2_4:-55134053 | Msa0335900:CDS |
| GACGAGAGTGAGGAATTAGG+TGG | 0.598306 | 2_4:+55134155 | None:intergenic |
| AATCCTTCAAGAGAAGGAAG+TGG | 0.601367 | 2_4:+55130776 | None:intergenic |
| AGCCCTATGAGGACGACCAT+GGG | 0.609444 | 2_4:-55134052 | Msa0335900:CDS |
| TCTCTCTCTAGAATTAAGAT+GGG | 0.611781 | 2_4:-55134251 | Msa0335900:exon |
| ATGGAGCAAGCAAACTGCAT+AGG | 0.613273 | 2_4:+55133804 | None:intergenic |
| TATATTGTGATAAAATGCAA+CGG | 0.616088 | 2_4:-55130645 | Msa0335900:three_prime_UTR |
| GAGCCATTCAATGAAATTTG+GGG | 0.617863 | 2_4:+55134181 | None:intergenic |
| TGAAGGAGATGACGAGAGTG+AGG | 0.618365 | 2_4:+55134145 | None:intergenic |
| CCGTGAGCACAACAATAACA+TGG | 0.635068 | 2_4:+55131052 | None:intergenic |
| CATGGATCAGAATTTAGGAA+AGG | 0.639859 | 2_4:-55131121 | Msa0335900:CDS |
| TCCTTCAAGAGAAGGAAGTG+GGG | 0.663895 | 2_4:+55130778 | None:intergenic |
| CACATTGGATTGCCTAACGT+AGG | 0.667692 | 2_4:-55133969 | Msa0335900:CDS |
| TAAAATGCAACGGATTTGTG+CGG | 0.725676 | 2_4:-55130635 | Msa0335900:three_prime_UTR |
| GAAGGTGGAACATGTGACTG+TGG | 0.730758 | 2_4:-55133997 | Msa0335900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTAAATTTTATACAC+GGG | + | chr2_4:55131871-55131890 | None:intergenic | 10.0% |
| !! | TTAGTCATATTAAATTATAT+TGG | + | chr2_4:55132047-55132066 | None:intergenic | 10.0% |
| !! | AATATAATTTAATATGACTA+AGG | - | chr2_4:55132046-55132065 | Msa0335900:intron | 10.0% |
| !! | AATAGTTCAATTAATTACAT+TGG | - | chr2_4:55131584-55131603 | Msa0335900:intron | 15.0% |
| !!! | ATAAATTTGAAATAAAGTGA+CGG | + | chr2_4:55131752-55131771 | None:intergenic | 15.0% |
| !! | TGATAGACAAAAAAATTATA+TGG | - | chr2_4:55132414-55132433 | Msa0335900:intron | 15.0% |
| !! | GATAGACAAAAAAATTATAT+GGG | - | chr2_4:55132415-55132434 | Msa0335900:intron | 15.0% |
| !!! | TAAAAAAACTGATTTATGTT+TGG | + | chr2_4:55133100-55133119 | None:intergenic | 15.0% |
| !! | AAATAGAGATAAAATATATG+TGG | + | chr2_4:55133495-55133514 | None:intergenic | 15.0% |
| !!! | ATTTTATCTCTATTTTATGT+AGG | - | chr2_4:55133500-55133519 | Msa0335900:intron | 15.0% |
| !!! | CATTATTTCATAGTTTTTTT+AGG | + | chr2_4:55133590-55133609 | None:intergenic | 15.0% |
| !! | TGAATATATTTCACAAATCT+AGG | - | chr2_4:55130516-55130535 | Msa0335900:three_prime_UTR | 20.0% |
| !! | GAATATATTTCACAAATCTA+GGG | - | chr2_4:55130517-55130536 | Msa0335900:three_prime_UTR | 20.0% |
| !!! | TCTTATCAAGAATTTTTCAA+GGG | - | chr2_4:55131227-55131246 | Msa0335900:intron | 20.0% |
| !! | AATTTGTATTTAGTAGTCTT+AGG | - | chr2_4:55131252-55131271 | Msa0335900:intron | 20.0% |
| !! | ACTATTGAAGTGATAAAATA+TGG | + | chr2_4:55131570-55131589 | None:intergenic | 20.0% |
| !! | AAATAGCATAGTTTATAGTT+GGG | + | chr2_4:55131653-55131672 | None:intergenic | 20.0% |
| !! | TAAATAGCATAGTTTATAGT+TGG | + | chr2_4:55131654-55131673 | None:intergenic | 20.0% |
| !! | TAAGTATAATTATGTGACTT+TGG | + | chr2_4:55131938-55131957 | None:intergenic | 20.0% |
| !!! | TCACATTTTTTAAAGTGTAA+AGG | + | chr2_4:55132179-55132198 | None:intergenic | 20.0% |
| !!! | TTCAAAAGTATTTGATAAGA+GGG | + | chr2_4:55132362-55132381 | None:intergenic | 20.0% |
| !!! | ATTCAAAAGTATTTGATAAG+AGG | + | chr2_4:55132363-55132382 | None:intergenic | 20.0% |
| !!! | ATAATTTTTTTGTCTATCAC+AGG | + | chr2_4:55132413-55132432 | None:intergenic | 20.0% |
| !! | AAAACCTAAGTACAAATTAA+GGG | + | chr2_4:55132608-55132627 | None:intergenic | 20.0% |
| !! | TAAAACCTAAGTACAAATTA+AGG | + | chr2_4:55132609-55132628 | None:intergenic | 20.0% |
| !! | AATGTTTGATCTAATTCATA+AGG | + | chr2_4:55132753-55132772 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTTCTTATGTAAT+TGG | + | chr2_4:55133274-55133293 | None:intergenic | 20.0% |
| !! | TATATTGTGATAAAATGCAA+CGG | - | chr2_4:55134152-55134171 | Msa0335900:CDS | 20.0% |
| ! | TAAAAACTGGAAAGTTTCTT+GGG | + | chr2_4:55130706-55130725 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTAAAAGAAGAGA+AGG | - | chr2_4:55130782-55130801 | Msa0335900:CDS | 25.0% |
| !!! | TAAGGTTTTTGATTGTGTTA+AGG | - | chr2_4:55130881-55130900 | Msa0335900:CDS | 25.0% |
| ! | CATATTGTTGTATCTATTGA+AGG | + | chr2_4:55131030-55131049 | None:intergenic | 25.0% |
| !! | ATTTTTCCCTAAAAATCGAA+GGG | + | chr2_4:55131168-55131187 | None:intergenic | 25.0% |
| !! | TATTTTTCCCTAAAAATCGA+AGG | + | chr2_4:55131169-55131188 | None:intergenic | 25.0% |
| !! | GTCTTATCAAGAATTTTTCA+AGG | - | chr2_4:55131226-55131245 | Msa0335900:intron | 25.0% |
| ! | CAAAAGAAAAGAAAACCTAA+GGG | + | chr2_4:55131288-55131307 | None:intergenic | 25.0% |
| ! | TCAAAAGAAAAGAAAACCTA+AGG | + | chr2_4:55131289-55131308 | None:intergenic | 25.0% |
| ! | TGAAAGCAAATTTCTCTTAT+AGG | - | chr2_4:55131306-55131325 | Msa0335900:intron | 25.0% |
| ! | GAAAGCAAATTTCTCTTATA+GGG | - | chr2_4:55131307-55131326 | Msa0335900:intron | 25.0% |
| ! | TTCAAATTAGATAAGAGAGA+TGG | - | chr2_4:55131446-55131465 | Msa0335900:intron | 25.0% |
| ! | TAAGAAGTTATGTGTATGAA+TGG | + | chr2_4:55131546-55131565 | None:intergenic | 25.0% |
| !!! | TTTTTTTGACAAAACAGCAT+AGG | + | chr2_4:55131814-55131833 | None:intergenic | 25.0% |
| ! | AGGTGTTTAACATTATGATT+AGG | - | chr2_4:55132066-55132085 | Msa0335900:intron | 25.0% |
| !! | AATGATTGTTTTCTTCTTGA+TGG | + | chr2_4:55132105-55132124 | None:intergenic | 25.0% |
| ! | AAAAATGTGAGCAAAATGAA+TGG | - | chr2_4:55132189-55132208 | Msa0335900:intron | 25.0% |
| !! | AAGATATGGTCTTTTACTAT+AGG | + | chr2_4:55132276-55132295 | None:intergenic | 25.0% |
| ! | ATATTGGAAAGGAAATACAA+AGG | + | chr2_4:55132303-55132322 | None:intergenic | 25.0% |
| ! | TATTTCCTTTCCAATATCAA+AGG | - | chr2_4:55132306-55132325 | Msa0335900:intron | 25.0% |
| ! | ATTTCCTTTCCAATATCAAA+GGG | - | chr2_4:55132307-55132326 | Msa0335900:intron | 25.0% |
| ! | ACAAAAAAATTATATGGGAG+AGG | - | chr2_4:55132420-55132439 | Msa0335900:intron | 25.0% |
| !!! | TGTTCTTAACTTTAGTTTTG+TGG | + | chr2_4:55132495-55132514 | None:intergenic | 25.0% |
| ! | TTGCTTGATGCATATATAAT+AGG | - | chr2_4:55132574-55132593 | Msa0335900:intron | 25.0% |
| ! | TGCTTGATGCATATATAATA+GGG | - | chr2_4:55132575-55132594 | Msa0335900:intron | 25.0% |
| !! | TTTAATCTGTACTTCTTTTG+TGG | - | chr2_4:55132625-55132644 | Msa0335900:intron | 25.0% |
| ! | GGGAAATAAAGGAAAATAAT+AGG | + | chr2_4:55132989-55133008 | None:intergenic | 25.0% |
| ! | GAATTGATAAAGGGAAATAA+AGG | + | chr2_4:55133000-55133019 | None:intergenic | 25.0% |
| ! | AAAGAAGGAGAATTGATAAA+GGG | + | chr2_4:55133009-55133028 | None:intergenic | 25.0% |
| ! | TAAAGAAGGAGAATTGATAA+AGG | + | chr2_4:55133010-55133029 | None:intergenic | 25.0% |
| ! | TAAAGGAGAATTGATAAAGA+AGG | + | chr2_4:55133024-55133043 | None:intergenic | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | + | chr2_4:55133041-55133060 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | + | chr2_4:55133144-55133163 | None:intergenic | 25.0% |
| !!! | CTTTTTAAGGTGAATAAGTA+GGG | - | chr2_4:55133374-55133393 | Msa0335900:intron | 25.0% |
| ! | TTATGTACCCATTATATGTA+GGG | + | chr2_4:55133422-55133441 | None:intergenic | 25.0% |
| ! | ATTATGTACCCATTATATGT+AGG | + | chr2_4:55133423-55133442 | None:intergenic | 25.0% |
| ! | TAGTTTATCTCTATTCTATG+TGG | - | chr2_4:55133442-55133461 | Msa0335900:intron | 25.0% |
| ! | AGTTTATCTCTATTCTATGT+GGG | - | chr2_4:55133443-55133462 | Msa0335900:intron | 25.0% |
| !! | AGGGTTTTTCCAAATAATAT+CGG | - | chr2_4:55133469-55133488 | Msa0335900:intron | 25.0% |
| !! | AGAAAAATTGTGGAAAGTTT+TGG | - | chr2_4:55133920-55133939 | Msa0335900:CDS | 25.0% |
| !!! | CATGATATGGTTTTAAATTG+CGG | - | chr2_4:55134106-55134125 | Msa0335900:CDS | 25.0% |
| !! | ATCTCTCTCTAGAATTAAGA+TGG | - | chr2_4:55130545-55130564 | Msa0335900:three_prime_UTR | 30.0% |
| !! | TCTCTCTCTAGAATTAAGAT+GGG | - | chr2_4:55130546-55130565 | Msa0335900:three_prime_UTR | 30.0% |
| AAACCCCAAATTTCATTGAA+TGG | - | chr2_4:55130613-55130632 | Msa0335900:three_prime_UTR | 30.0% | |
| TGAGCCATTCAATGAAATTT+GGG | + | chr2_4:55130620-55130639 | None:intergenic | 30.0% | |
| TTGAGCCATTCAATGAAATT+TGG | + | chr2_4:55130621-55130640 | None:intergenic | 30.0% | |
| ! | AGTTTGTGTTGATGAGTTAA+AGG | + | chr2_4:55130681-55130700 | None:intergenic | 30.0% |
| GTAAAAACTGGAAAGTTTCT+TGG | + | chr2_4:55130707-55130726 | None:intergenic | 30.0% | |
| TGAACATGATGAGAAGAATA+AGG | - | chr2_4:55130863-55130882 | Msa0335900:CDS | 30.0% | |
| CAATAGATACAACAATATGC+AGG | - | chr2_4:55131031-55131050 | Msa0335900:CDS | 30.0% | |
| ! | TTCTTAACCCTTCGATTTTT+AGG | - | chr2_4:55131096-55131115 | Msa0335900:CDS | 30.0% |
| ! | TCTTAACCCTTCGATTTTTA+GGG | - | chr2_4:55131097-55131116 | Msa0335900:CDS | 30.0% |
| AAATTCCCCTAAAAATCGAA+GGG | + | chr2_4:55131106-55131125 | None:intergenic | 30.0% | |
| AAAATTCCCCTAAAAATCGA+AGG | + | chr2_4:55131107-55131126 | None:intergenic | 30.0% | |
| ! | TTCTTAACCCTTCGATTTTT+AGG | - | chr2_4:55131096-55131115 | Msa0335900:CDS | 30.0% |
| ! | TCTTAACCCTTCGATTTTTA+GGG | - | chr2_4:55131097-55131116 | Msa0335900:CDS | 30.0% |
| TTAGGTCAATAATTTCCCTT+AGG | - | chr2_4:55131270-55131289 | Msa0335900:intron | 30.0% | |
| ATAGTAACGAAGGATATAGA+GGG | + | chr2_4:55131897-55131916 | None:intergenic | 30.0% | |
| ATTTGTCATCATAGTAACGA+AGG | + | chr2_4:55131907-55131926 | None:intergenic | 30.0% | |
| GAAAGCAAAAAGAAATGAGA+GGG | + | chr2_4:55132157-55132176 | None:intergenic | 30.0% | |
| ! | GTATCCCAACTTTTAGTAAA+AGG | - | chr2_4:55132235-55132254 | Msa0335900:intron | 30.0% |
| ! | AGAGCCTTTTACTAAAAGTT+GGG | + | chr2_4:55132242-55132261 | None:intergenic | 30.0% |
| ! | AAGAGCCTTTTACTAAAAGT+TGG | + | chr2_4:55132243-55132262 | None:intergenic | 30.0% |
| ! | AATACAAAGGCATGAAGATA+TGG | + | chr2_4:55132290-55132309 | None:intergenic | 30.0% |
| !! | TGTATATACTGGCTCTTAAT+GGG | + | chr2_4:55132463-55132482 | None:intergenic | 30.0% |
| !! | TTGTATATACTGGCTCTTAA+TGG | + | chr2_4:55132464-55132483 | None:intergenic | 30.0% |
| AGCCAGTATATACAACTATT+AGG | - | chr2_4:55132469-55132488 | Msa0335900:intron | 30.0% | |
| !! | ATCACCCTTAATTTGTACTT+AGG | - | chr2_4:55132601-55132620 | Msa0335900:intron | 30.0% |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | + | chr2_4:55132834-55132853 | None:intergenic | 30.0% |
| ! | TTCTAGAAAAGCTAGAAGTT+AGG | + | chr2_4:55132927-55132946 | None:intergenic | 30.0% |
| ! | AGCAAGAATTCACCTTTTTA+AGG | - | chr2_4:55133361-55133380 | Msa0335900:intron | 30.0% |
| CCTACTTATTCACCTTAAAA+AGG | + | chr2_4:55133376-55133395 | None:intergenic | 30.0% | |
| !!! | CCTTTTTAAGGTGAATAAGT+AGG | - | chr2_4:55133373-55133392 | Msa0335900:intron | 30.0% |
| TATGTACCCATTATATGTAG+GGG | + | chr2_4:55133421-55133440 | None:intergenic | 30.0% | |
| TATATGTGGCCGATATTATT+TGG | + | chr2_4:55133481-55133500 | None:intergenic | 30.0% | |
| ! | TCTCTATTTTATGTAGGACT+TGG | - | chr2_4:55133506-55133525 | Msa0335900:intron | 30.0% |
| ! | CTCTATTTTATGTAGGACTT+GGG | - | chr2_4:55133507-55133526 | Msa0335900:intron | 30.0% |
| ! | AATATATGGCCAGTGTTATT+TGG | + | chr2_4:55133538-55133557 | None:intergenic | 30.0% |
| GTTGCGATCAAGAAAATATA+TGG | + | chr2_4:55133552-55133571 | None:intergenic | 30.0% | |
| ACTCATTACAAAAGAAAGCA+TGG | - | chr2_4:55133829-55133848 | Msa0335900:CDS | 30.0% | |
| ! | GAACATTTTCTGCAGATAAA+TGG | + | chr2_4:55133862-55133881 | None:intergenic | 30.0% |
| !! | TCTAAAGCATTTGCTGTTAA+AGG | - | chr2_4:55133880-55133899 | Msa0335900:CDS | 30.0% |
| AGAACTCATGAGAAAAATTG+TGG | - | chr2_4:55133910-55133929 | Msa0335900:CDS | 30.0% | |
| AAAGATCATGTTAGATCCTT+CGG | - | chr2_4:55133985-55134004 | Msa0335900:CDS | 30.0% | |
| ! | CAATGAAATTTGGGGTTTGA+AGG | + | chr2_4:55130611-55130630 | None:intergenic | 35.0% |
| GAGCCATTCAATGAAATTTG+GGG | + | chr2_4:55130619-55130638 | None:intergenic | 35.0% | |
| CACTAGAGATTGGTAAAAAC+TGG | + | chr2_4:55130719-55130738 | None:intergenic | 35.0% | |
| ! | CAGTTTTTACCAATCTCTAG+TGG | - | chr2_4:55130717-55130736 | Msa0335900:CDS | 35.0% |
| ! | AATCTTCATTTTGCATCCCA+TGG | + | chr2_4:55130764-55130783 | None:intergenic | 35.0% |
| TGAAGTAAAAGAAGAGAAGG+TGG | - | chr2_4:55130785-55130804 | Msa0335900:CDS | 35.0% | |
| GAATTGAAGAAAAACGTGCA+TGG | - | chr2_4:55130909-55130928 | Msa0335900:CDS | 35.0% | |
| !!! | CGTGCATGGTTTTTGTTTTA+AGG | - | chr2_4:55130923-55130942 | Msa0335900:CDS | 35.0% |
| !!! | GCATGGTTTTTGTTTTAAGG+AGG | - | chr2_4:55130926-55130945 | Msa0335900:CDS | 35.0% |
| !!! | TTTGTTTTAAGGAGGAGAGA+AGG | - | chr2_4:55130934-55130953 | Msa0335900:CDS | 35.0% |
| ATTGAAGGTCTTACTGCATA+TGG | + | chr2_4:55131015-55131034 | None:intergenic | 35.0% | |
| AGATACAACAATATGCAGGT+TGG | - | chr2_4:55131035-55131054 | Msa0335900:CDS | 35.0% | |
| !! | ACAATATGCAGGTTGGTAAT+TGG | - | chr2_4:55131042-55131061 | Msa0335900:CDS | 35.0% |
| !! | CTTAACCCTTCGATTTTTAG+GGG | - | chr2_4:55131098-55131117 | Msa0335900:CDS | 35.0% |
| TTGCGTATGAAGTATGAACT+AGG | + | chr2_4:55131512-55131531 | None:intergenic | 35.0% | |
| ! | TTTTGACAAAACAGCATAGG+AGG | + | chr2_4:55131811-55131830 | None:intergenic | 35.0% |
| TCATGTTAAACTAGCATAGG+GGG | + | chr2_4:55131848-55131867 | None:intergenic | 35.0% | |
| GTCATGTTAAACTAGCATAG+GGG | + | chr2_4:55131849-55131868 | None:intergenic | 35.0% | |
| GGTCATGTTAAACTAGCATA+GGG | + | chr2_4:55131850-55131869 | None:intergenic | 35.0% | |
| CATAGTAACGAAGGATATAG+AGG | + | chr2_4:55131898-55131917 | None:intergenic | 35.0% | |
| GGAAAGCAAAAAGAAATGAG+AGG | + | chr2_4:55132158-55132177 | None:intergenic | 35.0% | |
| GGCCTAATAGTTGTATATAC+TGG | + | chr2_4:55132474-55132493 | None:intergenic | 35.0% | |
| !! | CAAACCAAACACGTTGTTTT+TGG | + | chr2_4:55132850-55132869 | None:intergenic | 35.0% |
| CAAAAACAACGTGTTTGGTT+TGG | - | chr2_4:55132848-55132867 | Msa0335900:intron | 35.0% | |
| AGTTAGGATTTGTAGCTTCA+TGG | + | chr2_4:55132911-55132930 | None:intergenic | 35.0% | |
| ACTCTGTATTAGTGTGTGTT+TGG | + | chr2_4:55133236-55133255 | None:intergenic | 35.0% | |
| ! | TGGGTTTTTCCAAATAACAC+TGG | - | chr2_4:55133526-55133545 | Msa0335900:intron | 35.0% |
| ! | TCATTTTGCAGATGCATATG+TGG | - | chr2_4:55133650-55133669 | Msa0335900:intron | 35.0% |
| ! | CATTTTGCAGATGCATATGT+GGG | - | chr2_4:55133651-55133670 | Msa0335900:intron | 35.0% |
| ! | ATTTTGCAGATGCATATGTG+GGG | - | chr2_4:55133652-55133671 | Msa0335900:intron | 35.0% |
| CATGGATCAGAATTTAGGAA+AGG | - | chr2_4:55133676-55133695 | Msa0335900:intron | 35.0% | |
| !! | AGAGTTCTGAAATCCTTCAA+TGG | + | chr2_4:55133805-55133824 | None:intergenic | 35.0% |
| !! | CATTTGCTGTTAAAGGTGAT+TGG | - | chr2_4:55133887-55133906 | Msa0335900:CDS | 35.0% |
| ! | GTGTTTAAAATCTGAACCAC+AGG | + | chr2_4:55133953-55133972 | None:intergenic | 35.0% |
| TCTTCAAATCCTTCAAGAGA+AGG | + | chr2_4:55134030-55134049 | None:intergenic | 35.0% | |
| ! | TAAAATGCAACGGATTTGTG+CGG | - | chr2_4:55134162-55134181 | Msa0335900:CDS | 35.0% |
| TGATGAGTTAAAGGCGATGA+AGG | + | chr2_4:55130672-55130691 | None:intergenic | 40.0% | |
| GGCTTAATTCCACTAGAGAT+TGG | + | chr2_4:55130729-55130748 | None:intergenic | 40.0% | |
| TAGTGGAATTAAGCCCTATG+AGG | - | chr2_4:55130734-55130753 | Msa0335900:CDS | 40.0% | |
| TCAGATTCACATCCTACGTT+AGG | + | chr2_4:55130843-55130862 | None:intergenic | 40.0% | |
| ! | TTAAGGAGGAGAGAAGGTTT+TGG | - | chr2_4:55130940-55130959 | Msa0335900:CDS | 40.0% |
| CTTAATTGTGCGTCTTGTGT+CGG | - | chr2_4:55131774-55131793 | Msa0335900:intron | 40.0% | |
| GGGTCATGTTAAACTAGCAT+AGG | + | chr2_4:55131851-55131870 | None:intergenic | 40.0% | |
| TAAAAGTTGGGATACCCTAG+CGG | + | chr2_4:55132230-55132249 | None:intergenic | 40.0% | |
| CACACCCTTTGATATTGGAA+AGG | + | chr2_4:55132314-55132333 | None:intergenic | 40.0% | |
| CATTGCACACCCTTTGATAT+TGG | + | chr2_4:55132319-55132338 | None:intergenic | 40.0% | |
| CTAGCCAAAAACAACGTGTT+TGG | - | chr2_4:55132843-55132862 | Msa0335900:intron | 40.0% | |
| !! | TCATGGAGAATTGCTTTTGG+AGG | + | chr2_4:55132894-55132913 | None:intergenic | 40.0% |
| ! | GCTTCATGGAGAATTGCTTT+TGG | + | chr2_4:55132897-55132916 | None:intergenic | 40.0% |
| !! | GTGATTCTGGATTAGCTCTT+TGG | + | chr2_4:55133292-55133311 | None:intergenic | 40.0% |
| CATCATCATCGATGTGATTC+TGG | + | chr2_4:55133305-55133324 | None:intergenic | 40.0% | |
| ! | AGGTGAATAAGTAGGGTATC+CGG | - | chr2_4:55133381-55133400 | Msa0335900:intron | 40.0% |
| TACCCATTATATGTAGGGGT+CGG | + | chr2_4:55133417-55133436 | None:intergenic | 40.0% | |
| TCTCTATTCTATGTGGGACT+AGG | - | chr2_4:55133449-55133468 | Msa0335900:intron | 40.0% | |
| CTCTATTCTATGTGGGACTA+GGG | - | chr2_4:55133450-55133469 | Msa0335900:intron | 40.0% | |
| ! | TTTTGCAGATGCATATGTGG+GGG | - | chr2_4:55133653-55133672 | Msa0335900:intron | 40.0% |
| AAAGGACCAGACTCACTTAA+AGG | - | chr2_4:55133694-55133713 | Msa0335900:intron | 40.0% | |
| TGTGTTCCTTTAAGTGAGTC+TGG | + | chr2_4:55133703-55133722 | None:intergenic | 40.0% | |
| CCATGTTATTGTTGTGCTCA+CGG | - | chr2_4:55133745-55133764 | Msa0335900:intron | 40.0% | |
| TCCAAGAGCAAAACCATTGA+AGG | - | chr2_4:55133789-55133808 | Msa0335900:CDS | 40.0% | |
| !! | TCCTTCAATGGTTTTGCTCT+TGG | + | chr2_4:55133793-55133812 | None:intergenic | 40.0% |
| !! | AAGTTTTGGTATTGCACCTG+TGG | - | chr2_4:55133934-55133953 | Msa0335900:CDS | 40.0% |
| CATGTTAGATCCTTCGGAAA+AGG | - | chr2_4:55133991-55134010 | Msa0335900:CDS | 40.0% | |
| ATCCTTCAAGAGAAGGAAGT+GGG | + | chr2_4:55134023-55134042 | None:intergenic | 40.0% | |
| AATCCTTCAAGAGAAGGAAG+TGG | + | chr2_4:55134024-55134043 | None:intergenic | 40.0% | |
| GAGAAAGAATGCAGCAATAC+TGG | - | chr2_4:55134051-55134070 | Msa0335900:CDS | 40.0% | |
| GCTCATGCATGATCATGATA+TGG | - | chr2_4:55134093-55134112 | Msa0335900:CDS | 40.0% | |
| GATTTGTGCGGTTGAAATTG+AGG | - | chr2_4:55134174-55134193 | Msa0335900:CDS | 40.0% | |
| GATGACGAGAGTGAGGAATT+AGG | + | chr2_4:55130648-55130667 | None:intergenic | 45.0% | |
| CACATTGGATTGCCTAACGT+AGG | - | chr2_4:55130828-55130847 | Msa0335900:CDS | 45.0% | |
| ACAAGAATCTGAGCAGGAGT+TGG | + | chr2_4:55130969-55130988 | None:intergenic | 45.0% | |
| ACTCCTGCTCAGATTCTTGT+TGG | - | chr2_4:55130969-55130988 | Msa0335900:CDS | 45.0% | |
| ATGGAGCAAGCAAACTGCAT+AGG | + | chr2_4:55130996-55131015 | None:intergenic | 45.0% | |
| AAAAGTTGGGATACCCTAGC+GGG | + | chr2_4:55132229-55132248 | None:intergenic | 45.0% | |
| ACCCATTATATGTAGGGGTC+GGG | + | chr2_4:55133416-55133435 | None:intergenic | 45.0% | |
| CCGTGAGCACAACAATAACA+TGG | + | chr2_4:55133748-55133767 | None:intergenic | 45.0% | |
| TCCTTCAAGAGAAGGAAGTG+GGG | + | chr2_4:55134022-55134041 | None:intergenic | 45.0% | |
| !!! | TAATAATTAAATTTTATACA+CGG | + | chr2_4:55131872-55131891 | None:intergenic | 5.0% |
| GACGAGAGTGAGGAATTAGG+TGG | + | chr2_4:55130645-55130664 | None:intergenic | 50.0% | |
| TGAAGGAGATGACGAGAGTG+AGG | + | chr2_4:55130655-55130674 | None:intergenic | 50.0% | |
| ATCCCATGGTCGTCCTCATA+GGG | + | chr2_4:55130750-55130769 | None:intergenic | 50.0% | |
| GAAGGTGGAACATGTGACTG+TGG | - | chr2_4:55130800-55130819 | Msa0335900:CDS | 50.0% | |
| ! | GTGACTGTGGCTTTGCACAT+TGG | - | chr2_4:55130813-55130832 | Msa0335900:CDS | 50.0% |
| GGTCCAACAAGAATCTGAGC+AGG | + | chr2_4:55130975-55130994 | None:intergenic | 50.0% | |
| ACCCCGACCCCTACATATAA+TGG | - | chr2_4:55133411-55133430 | Msa0335900:intron | 50.0% | |
| CCCATTATATGTAGGGGTCG+GGG | + | chr2_4:55133415-55133434 | None:intergenic | 50.0% | |
| CCCCGACCCCTACATATAAT+GGG | - | chr2_4:55133412-55133431 | Msa0335900:intron | 50.0% | |
| ! | GGGGGCATGGATCAGAATTT+AGG | - | chr2_4:55133671-55133690 | Msa0335900:intron | 50.0% |
| CACAACCAGCAGCAATGCTA+AGG | - | chr2_4:55133719-55133738 | Msa0335900:intron | 50.0% | |
| ! | TGGGGAATGACCTTTTCCGA+AGG | + | chr2_4:55134004-55134023 | None:intergenic | 50.0% |
| TCCCCACTTCCTTCTCTTGA+AGG | - | chr2_4:55134018-55134037 | Msa0335900:CDS | 50.0% | |
| AAGCCCTATGAGGACGACCA+TGG | - | chr2_4:55130744-55130763 | Msa0335900:CDS | 55.0% | |
| AGCCCTATGAGGACGACCAT+GGG | - | chr2_4:55130745-55130764 | Msa0335900:CDS | 55.0% | |
| CATCCCATGGTCGTCCTCAT+AGG | + | chr2_4:55130751-55130770 | None:intergenic | 55.0% | |
| CAGATGCATATGTGGGGGCA+TGG | - | chr2_4:55133658-55133677 | Msa0335900:intron | 55.0% | |
| ! | GGTAGCCTTAGCATTGCTGC+TGG | + | chr2_4:55133727-55133746 | None:intergenic | 55.0% |
| TTGTTGTCCCGCTCCCGCTA+GGG | - | chr2_4:55132213-55132232 | Msa0335900:intron | 60.0% | |
| TTGGGATACCCTAGCGGGAG+CGG | + | chr2_4:55132224-55132243 | None:intergenic | 60.0% | |
| ! | CTTGTTGTCCCGCTCCCGCT+AGG | - | chr2_4:55132212-55132231 | Msa0335900:intron | 65.0% |
| TGGGATACCCTAGCGGGAGC+GGG | + | chr2_4:55132223-55132242 | None:intergenic | 65.0% | |
| AGGGGTCGGGGTTCGAACTC+CGG | + | chr2_4:55133403-55133422 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 55130509 | 55134310 | 55130509 | ID=Msa0335900;Name=Msa0335900 |
| chr2_4 | mRNA | 55130509 | 55134310 | 55130509 | ID=Msa0335900-mRNA-1;Parent=Msa0335900;Name=Msa0335900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|2|206|310 |
| chr2_4 | exon | 55130509 | 55131158 | 55130509 | ID=Msa0335900-mRNA-1:exon:16702;Parent=Msa0335900-mRNA-1 |
| chr2_4 | exon | 55133767 | 55134310 | 55133767 | ID=Msa0335900-mRNA-1:exon:16701;Parent=Msa0335900-mRNA-1 |
| chr2_4 | five_prime_UTR | 55134256 | 55134310 | 55134256 | ID=Msa0335900-mRNA-1:five_prime_utr;Parent=Msa0335900-mRNA-1 |
| chr2_4 | CDS | 55133767 | 55134255 | 55133767 | ID=Msa0335900-mRNA-1:cds;Parent=Msa0335900-mRNA-1 |
| chr2_4 | CDS | 55130715 | 55131158 | 55130715 | ID=Msa0335900-mRNA-1:cds;Parent=Msa0335900-mRNA-1 |
| chr2_4 | three_prime_UTR | 55130509 | 55130714 | 55130509 | ID=Msa0335900-mRNA-1:three_prime_utr;Parent=Msa0335900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
