AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336080 MtrunA17_Chr2g0321631 87.500 256 24 5 1 255 1 249 6.16e-160 443
Msa0336080 MtrunA17_Chr4g0026141 60.536 261 85 7 1 250 1 254 3.22e-104 303
Msa0336080 MtrunA17_Chr7g0266701 47.328 262 117 4 1 253 1 250 1.50e-77 235
Msa0336080 MtrunA17_Chr4g0076731 43.478 161 76 4 6 164 56 203 2.73e-37 135
Msa0336080 MtrunA17_Chr6g0481091 36.765 204 117 5 5 206 7 200 3.33e-37 131
Msa0336080 MtrunA17_Chr5g0417791 45.223 157 78 5 5 160 4 153 4.81e-37 131
Msa0336080 MtrunA17_Chr6g0453131 41.379 174 88 6 1 167 12 178 5.76e-37 134
Msa0336080 MtrunA17_Chr2g0318081 46.203 158 71 5 5 160 17 162 1.59e-36 132
Msa0336080 MtrunA17_Chr5g0405211 39.252 214 109 8 5 209 9 210 2.20e-36 132
Msa0336080 MtrunA17_Chr5g0400461 46.626 163 67 7 5 159 7 157 3.53e-36 130
Msa0336080 MtrunA17_Chr8g0359921 46.154 156 76 5 5 160 15 162 6.32e-36 130
Msa0336080 MtrunA17_Chr5g0433781 43.871 155 79 4 5 159 7 153 6.64e-36 134
Msa0336080 MtrunA17_Chr4g0038751 41.379 174 82 6 6 175 17 174 7.06e-36 129
Msa0336080 MtrunA17_Chr4g0042561 42.675 157 82 4 5 160 10 159 8.86e-36 128
Msa0336080 MtrunA17_Chr2g0309891 44.937 158 76 7 5 160 7 155 3.13e-35 129
Msa0336080 MtrunA17_Chr1g0200561 49.254 134 58 5 5 135 20 146 3.13e-35 129
Msa0336080 MtrunA17_Chr2g0309331 37.173 191 102 6 5 191 11 187 3.91e-35 128
Msa0336080 MtrunA17_Chr4g0017921 40.104 192 92 9 5 190 9 183 7.98e-35 127
Msa0336080 MtrunA17_Chr5g0417001 41.071 168 83 7 6 165 16 175 9.35e-35 128
Msa0336080 MtrunA17_Chr4g0054791 36.406 217 117 7 5 209 7 214 1.01e-34 126
Msa0336080 MtrunA17_Chr3g0109821 41.772 158 81 5 5 160 7 155 1.03e-34 131
Msa0336080 MtrunA17_Chr8g0372121 50.000 134 57 6 5 135 7 133 1.66e-34 125
Msa0336080 MtrunA17_Chr3g0144271 45.963 161 73 6 5 161 24 174 1.73e-34 128
Msa0336080 MtrunA17_Chr8g0346001 36.538 208 107 9 5 199 16 211 9.40e-34 126
Msa0336080 MtrunA17_Chr4g0018391 41.509 159 78 6 5 160 8 154 1.70e-33 124
Msa0336080 MtrunA17_Chr8g0384721 40.341 176 85 7 5 173 8 170 1.83e-33 122
Msa0336080 MtrunA17_Chr1g0183741 41.772 158 76 5 5 160 11 154 2.64e-33 122
Msa0336080 MtrunA17_Chr3g0091921 40.881 159 80 5 5 160 17 164 5.04e-33 122
Msa0336080 MtrunA17_Chr5g0398971 40.571 175 87 8 5 173 8 171 5.78e-33 122
Msa0336080 MtrunA17_Chr4g0060931 37.975 158 90 4 3 160 16 165 5.78e-33 123
Msa0336080 MtrunA17_Chr7g0252971 38.922 167 83 5 5 160 9 167 6.24e-33 122
Msa0336080 MtrunA17_Chr3g0124761 43.636 165 79 6 5 166 8 161 6.48e-33 121
Msa0336080 MtrunA17_Chr3g0130731 41.317 167 88 5 5 170 8 165 7.69e-33 121
Msa0336080 MtrunA17_Chr3g0139331 41.818 165 84 6 2 165 9 162 1.64e-32 121
Msa0336080 MtrunA17_Chr4g0047841 40.761 184 78 7 5 165 16 191 1.66e-32 121
Msa0336080 MtrunA17_Chr6g0453451 37.186 199 106 6 5 203 21 200 1.71e-32 120
Msa0336080 MtrunA17_Chr2g0312321 42.308 156 79 6 5 160 12 156 2.33e-32 120
Msa0336080 MtrunA17_Chr7g0261411 40.764 157 79 4 5 160 11 154 2.45e-32 119
Msa0336080 MtrunA17_Chr8g0361731 45.113 133 62 4 6 135 16 140 2.89e-32 122
Msa0336080 MtrunA17_Chr4g0056541 41.509 159 78 7 5 160 8 154 3.32e-32 121
Msa0336080 MtrunA17_Chr2g0326361 32.422 256 145 8 5 243 15 259 3.33e-32 120
Msa0336080 MtrunA17_Chr1g0147421 40.491 163 80 6 2 160 25 174 3.61e-32 120
Msa0336080 MtrunA17_Chr2g0316971 44.697 132 66 3 5 135 24 149 4.03e-32 121
Msa0336080 MtrunA17_Chr6g0484441 39.623 159 84 5 2 160 3 149 8.16e-32 119
Msa0336080 MtrunA17_Chr7g0217711 44.615 130 65 4 6 135 21 143 1.88e-31 114
Msa0336080 MtrunA17_Chr2g0318101 38.265 196 94 8 5 187 16 197 1.89e-31 119
Msa0336080 MtrunA17_Chr3g0128111 40.645 155 82 6 7 160 45 190 2.08e-31 116
Msa0336080 MtrunA17_Chr7g0214071 42.138 159 75 6 5 161 16 159 4.95e-31 115
Msa0336080 MtrunA17_Chr5g0428991 41.667 156 83 5 5 160 26 173 7.88e-31 120
Msa0336080 MtrunA17_Chr7g0263931 40.000 165 87 5 5 165 12 168 1.58e-30 115
Msa0336080 MtrunA17_Chr3g0130101 39.623 159 88 6 6 164 9 159 2.01e-30 116
Msa0336080 MtrunA17_Chr8g0345671 41.772 158 79 5 3 159 10 155 4.89e-30 115
Msa0336080 MtrunA17_Chr8g0385991 41.250 160 83 4 5 161 15 166 5.01e-30 112
Msa0336080 MtrunA17_Chr3g0128151 40.385 156 85 5 5 160 23 170 7.42e-30 117
Msa0336080 MtrunA17_Chr8g0364791 38.365 159 90 6 6 164 8 158 9.09e-30 115
Msa0336080 MtrunA17_Chr6g0461661 41.791 134 71 3 3 135 17 144 1.68e-29 114
Msa0336080 MtrunA17_Chr7g0217721 44.961 129 64 4 7 135 22 143 2.89e-29 113
Msa0336080 MtrunA17_Chr1g0197351 39.241 158 88 4 6 160 44 196 2.97e-29 114
Msa0336080 MtrunA17_Chr2g0311651 38.021 192 90 8 2 174 19 200 3.31e-29 112
Msa0336080 MtrunA17_Chr3g0092671 36.875 160 93 4 6 165 7 158 4.12e-29 114
Msa0336080 MtrunA17_Chr8g0345691 38.125 160 86 5 1 159 9 156 1.27e-28 112
Msa0336080 MtrunA17_Chr8g0384201 37.736 159 91 6 6 164 8 158 2.17e-28 112
Msa0336080 MtrunA17_Chr7g0253011 36.025 161 93 4 3 160 16 169 2.35e-28 111
Msa0336080 MtrunA17_Chr1g0201021 45.185 135 69 4 4 138 19 148 2.95e-28 112
Msa0336080 MtrunA17_Chr1g0197361 36.875 160 93 5 6 165 10 161 9.86e-28 111
Msa0336080 MtrunA17_Chr5g0442771 37.126 167 83 6 6 160 20 176 1.02e-27 108
Msa0336080 MtrunA17_Chr8g0345711 40.580 138 77 4 5 141 13 146 1.05e-27 104
Msa0336080 MtrunA17_Chr2g0311661 38.286 175 81 7 2 159 18 182 2.23e-27 106
Msa0336080 MtrunA17_Chr3g0131911 39.506 162 84 4 5 160 15 168 4.77e-27 104
Msa0336080 MtrunA17_Chr2g0321741 45.455 110 54 4 25 134 13 116 1.09e-23 98.2
Msa0336080 MtrunA17_Chr4g0050701 41.353 133 61 5 5 135 12 129 6.64e-23 92.4
Msa0336080 MtrunA17_Chr8g0345721 34.337 166 79 5 7 144 38 201 6.93e-23 92.8
Msa0336080 MtrunA17_Chr8g0345731 38.060 134 75 5 5 134 25 154 1.27e-21 88.6
Msa0336080 MtrunA17_Chr8g0345701 37.584 149 70 7 5 137 8 149 1.36e-21 88.6
Msa0336080 MtrunA17_Chr3g0113001 46.392 97 49 3 65 160 20 114 5.62e-21 89.7
Msa0336080 MtrunA17_Chr8g0345741 37.190 121 71 4 15 134 2 118 1.27e-19 82.8
Msa0336080 MtrunA17_Chr3g0113031 47.619 84 40 3 79 160 9 90 7.14e-17 77.8
Msa0336080 MtrunA17_Chr7g0243371 40.449 89 47 3 61 147 14 98 2.20e-14 67.8
Msa0336080 MtrunA17_Chr7g0251661 30.769 143 92 3 3 145 9 144 3.70e-14 68.2
Msa0336080 MtrunA17_Chr3g0130321 27.811 169 96 5 5 162 8 161 6.85e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336080 AT3G44350.2 51.587 252 107 4 2 253 3 239 9.62e-83 248
Msa0336080 AT5G22380.1 54.000 250 88 5 7 253 8 233 1.00e-82 248
Msa0336080 AT3G44350.1 60.645 155 59 2 2 156 3 155 2.74e-62 193
Msa0336080 AT4G17980.1 47.468 158 73 6 5 159 7 157 7.24e-40 139
Msa0336080 AT4G17980.2 47.468 158 73 6 5 159 7 157 1.16e-39 139
Msa0336080 AT3G15500.1 47.468 158 69 5 5 160 15 160 2.85e-38 136
Msa0336080 AT2G02450.1 43.312 157 74 4 6 160 53 196 1.13e-37 136
Msa0336080 AT2G02450.2 43.312 157 74 4 6 160 53 196 2.05e-37 136
Msa0336080 AT3G17730.1 41.667 168 86 5 5 170 7 164 2.24e-37 132
Msa0336080 AT5G66300.1 46.541 159 71 7 5 160 13 160 4.15e-37 132
Msa0336080 AT1G52890.1 46.203 158 71 5 5 160 15 160 6.87e-37 132
Msa0336080 AT2G17040.1 41.520 171 80 6 6 172 8 162 1.85e-36 130
Msa0336080 AT5G46590.1 44.586 157 77 5 5 159 7 155 1.87e-36 130
Msa0336080 AT1G69490.1 41.975 162 86 4 5 165 10 164 7.37e-36 129
Msa0336080 AT4G10350.1 41.753 194 93 9 5 192 10 189 7.94e-36 130
Msa0336080 AT1G32510.1 44.172 163 75 6 5 159 7 161 1.05e-35 129
Msa0336080 AT5G61430.1 41.772 158 84 4 3 160 15 164 1.22e-35 130
Msa0336080 AT3G12910.1 42.169 166 80 4 6 160 23 183 1.43e-35 129
Msa0336080 AT4G36160.1 42.286 175 77 7 5 176 11 164 2.27e-35 130
Msa0336080 AT4G36160.3 42.286 175 77 7 5 176 11 164 2.27e-35 130
Msa0336080 AT4G36160.2 42.286 175 77 7 5 176 15 168 2.68e-35 130
Msa0336080 AT2G18060.3 45.283 159 72 7 5 160 10 156 3.39e-35 129
Msa0336080 AT2G18060.1 45.283 159 72 7 5 160 10 156 3.39e-35 129
Msa0336080 AT3G49530.2 41.875 160 86 5 1 160 10 162 3.42e-35 130
Msa0336080 AT4G27410.2 43.671 158 75 6 5 160 15 160 3.72e-35 127
Msa0336080 AT2G24430.2 40.625 160 84 4 2 160 14 163 4.49e-35 128
Msa0336080 AT2G24430.1 40.625 160 84 4 2 160 14 163 4.49e-35 128
Msa0336080 AT5G17260.1 43.671 158 78 5 5 160 7 155 6.23e-35 130
Msa0336080 AT3G49530.1 41.875 160 86 5 1 160 10 162 6.54e-35 130
Msa0336080 AT4G35580.1 43.750 160 82 6 1 160 6 157 9.55e-35 130
Msa0336080 AT4G35580.2 43.750 160 82 6 1 160 6 157 1.31e-34 130
Msa0336080 AT4G35580.3 43.750 160 82 6 1 160 6 157 1.33e-34 130
Msa0336080 AT4G27410.3 41.420 169 80 6 5 160 15 177 1.46e-34 126
Msa0336080 AT1G65910.1 43.590 156 80 4 5 160 7 154 1.62e-34 130
Msa0336080 AT1G76420.1 42.683 164 77 6 5 164 23 173 2.23e-34 126
Msa0336080 AT1G33060.1 42.500 160 84 5 1 160 21 172 2.54e-34 130
Msa0336080 AT1G33060.2 42.500 160 84 5 1 160 21 172 2.65e-34 130
Msa0336080 AT3G18400.1 43.827 162 74 7 2 160 3 150 2.89e-34 125
Msa0336080 AT1G71930.2 37.288 236 119 11 5 237 10 219 3.00e-34 125
Msa0336080 AT1G71930.1 37.288 236 119 11 5 237 10 219 3.00e-34 125
Msa0336080 AT5G24590.2 41.509 159 80 4 5 160 14 162 3.87e-34 128
Msa0336080 AT5G07680.2 39.873 158 87 4 3 160 2 151 7.22e-34 124
Msa0336080 AT1G61110.1 41.916 167 78 5 5 160 17 175 8.31e-34 124
Msa0336080 AT5G07680.1 39.873 158 87 4 3 160 16 165 8.43e-34 125
Msa0336080 AT1G79580.3 39.645 169 85 5 5 169 18 173 1.39e-33 125
Msa0336080 AT1G79580.5 39.645 169 85 5 5 169 18 173 1.39e-33 125
Msa0336080 AT1G79580.4 39.645 169 85 5 5 169 18 173 1.39e-33 125
Msa0336080 AT1G79580.2 39.645 169 85 5 5 169 18 173 1.39e-33 125
Msa0336080 AT1G79580.1 39.645 169 85 5 5 169 18 173 1.39e-33 125
Msa0336080 AT5G46590.2 46.324 136 65 4 5 138 7 136 2.26e-33 122
Msa0336080 AT3G61910.1 36.744 215 108 8 5 198 12 219 3.07e-33 123
Msa0336080 AT1G56010.2 41.667 156 85 4 5 160 20 169 5.37e-33 122
Msa0336080 AT1G01720.1 42.683 164 81 5 5 165 8 161 7.18e-33 121
Msa0336080 AT1G77450.1 36.929 241 117 10 5 240 11 221 7.49e-33 120
Msa0336080 AT5G62380.2 38.608 158 84 5 5 160 8 154 1.15e-32 122
Msa0336080 AT5G62380.1 38.608 158 84 5 5 160 8 154 1.15e-32 122
Msa0336080 AT5G08790.1 37.156 218 119 8 5 215 8 214 1.68e-32 120
Msa0336080 AT3G15170.1 39.024 164 92 4 5 167 21 177 2.47e-32 120
Msa0336080 AT3G04060.1 38.608 158 90 3 3 160 19 169 2.81e-32 121
Msa0336080 AT3G10490.1 38.854 157 85 5 6 160 29 176 2.89e-32 118
Msa0336080 AT1G54330.1 42.949 156 78 5 5 160 7 151 3.63e-32 120
Msa0336080 AT1G26870.1 45.714 140 62 6 1 135 12 142 3.90e-32 122
Msa0336080 AT5G18270.1 37.500 160 93 3 1 160 18 170 4.44e-32 120
Msa0336080 AT3G04070.2 40.678 177 86 6 5 170 11 179 5.08e-32 120
Msa0336080 AT1G33280.1 45.714 140 66 5 5 141 9 141 7.39e-32 119
Msa0336080 AT5G63790.1 41.573 178 88 7 5 177 51 217 7.41e-32 119
Msa0336080 AT3G10480.1 39.490 157 84 5 6 160 29 176 9.20e-32 121
Msa0336080 AT3G03200.1 40.506 158 83 5 5 160 7 155 9.91e-32 122
Msa0336080 AT2G46770.1 40.828 169 80 8 5 160 17 178 1.00e-31 120
Msa0336080 AT1G32770.1 41.566 166 80 8 5 160 17 175 1.03e-31 120
Msa0336080 AT3G12977.1 38.462 156 87 4 5 160 19 165 1.08e-31 118
Msa0336080 AT5G18270.2 36.875 160 94 3 1 160 18 170 1.23e-31 119
Msa0336080 AT5G63790.2 41.573 178 88 7 5 177 61 227 1.34e-31 119
Msa0336080 AT5G39610.1 39.241 158 88 4 3 160 19 168 1.78e-31 117
Msa0336080 AT2G43000.1 39.490 157 82 5 6 160 20 165 4.72e-31 116
Msa0336080 AT1G12260.2 40.881 159 79 6 5 160 8 154 5.53e-31 117
Msa0336080 AT3G10480.2 38.854 157 84 5 6 160 29 175 9.60e-31 119
Msa0336080 AT1G12260.1 40.881 159 79 6 5 160 8 154 9.77e-31 118
Msa0336080 AT3G10490.2 38.854 157 85 5 6 160 29 176 1.13e-30 119
Msa0336080 AT3G04070.1 42.568 148 71 4 5 146 11 150 1.62e-30 117
Msa0336080 AT3G29035.1 38.608 158 89 4 3 160 23 172 2.82e-30 115
Msa0336080 AT5G39820.1 34.973 183 92 6 6 168 22 197 5.30e-30 115
Msa0336080 AT1G62700.1 42.138 159 77 8 5 160 8 154 9.19e-30 115
Msa0336080 AT1G62700.2 42.138 159 77 8 5 160 8 154 9.19e-30 115
Msa0336080 AT3G10500.1 37.500 160 92 4 6 165 11 162 1.43e-29 116
Msa0336080 AT2G33480.2 39.873 158 78 5 5 161 16 157 1.45e-29 112
Msa0336080 AT3G15510.1 40.964 166 75 7 8 160 21 176 1.82e-29 114
Msa0336080 AT5G53950.1 44.361 133 65 4 5 135 18 143 2.04e-29 114
Msa0336080 AT1G34190.1 39.506 162 90 5 4 165 16 169 2.22e-29 116
Msa0336080 AT3G44290.2 43.939 132 68 4 6 137 16 141 1.22e-28 108
Msa0336080 AT2G33480.1 39.506 162 75 6 5 161 16 159 1.46e-28 109
Msa0336080 AT1G34180.3 40.123 162 89 6 4 165 16 169 1.61e-28 112
Msa0336080 AT4G28530.1 36.257 171 83 4 5 160 11 170 2.40e-28 110
Msa0336080 AT1G34180.1 40.123 162 89 6 4 165 16 169 3.70e-28 112
Msa0336080 AT3G44290.1 43.182 132 69 4 6 137 16 141 3.84e-28 110
Msa0336080 AT5G64060.1 38.125 160 89 6 6 164 8 158 5.39e-28 110
Msa0336080 AT5G22290.1 42.636 129 68 4 6 134 23 145 6.49e-28 109
Msa0336080 AT2G27300.1 42.308 130 67 4 6 134 16 138 6.71e-28 109
Msa0336080 AT5G13180.1 40.252 159 79 6 5 161 15 159 7.64e-28 107
Msa0336080 AT5G04410.1 38.125 160 91 5 6 165 11 162 1.18e-27 111
Msa0336080 AT5G09330.5 44.615 130 67 4 6 135 8 132 3.40e-27 109
Msa0336080 AT5G09330.2 44.615 130 67 4 6 135 8 132 3.40e-27 109
Msa0336080 AT5G09330.4 44.615 130 67 4 6 135 8 132 3.40e-27 109
Msa0336080 AT5G09330.3 44.615 130 67 4 6 135 8 132 3.40e-27 109
Msa0336080 AT5G09330.1 44.615 130 67 4 6 135 8 132 3.40e-27 109
Msa0336080 AT1G34180.4 37.209 172 92 6 4 165 16 181 1.15e-26 107
Msa0336080 AT1G34180.2 37.209 172 92 6 4 165 16 181 2.77e-26 107
Msa0336080 AT3G10480.3 32.979 188 86 6 6 160 29 209 1.00e-25 105
Msa0336080 AT3G04420.2 33.121 157 94 3 3 159 2 147 1.94e-25 102
Msa0336080 AT3G04420.1 33.758 157 93 3 3 159 2 147 4.90e-25 101
Msa0336080 AT4G01550.1 36.774 155 85 4 7 159 7 150 1.35e-23 99.4
Msa0336080 AT1G52880.1 38.596 171 87 5 8 168 21 183 3.68e-23 96.3
Msa0336080 AT1G32870.2 36.875 160 93 5 6 165 12 163 1.22e-21 94.0
Msa0336080 AT1G32870.1 36.875 160 93 5 6 165 12 163 1.22e-21 94.0
Msa0336080 AT1G32870.3 36.875 160 93 5 6 165 48 199 1.97e-21 93.6
Msa0336080 AT4G01520.1 33.540 161 95 3 1 159 1 151 2.19e-21 91.3
Msa0336080 AT5G04395.1 33.566 143 78 4 5 134 29 167 2.28e-21 88.6
Msa0336080 AT4G10350.2 40.690 145 72 7 54 192 6 142 2.59e-21 90.9
Msa0336080 AT1G56010.1 42.268 97 55 1 64 160 7 102 6.63e-21 89.0
Msa0336080 AT5G61430.2 42.268 97 54 2 64 160 7 101 6.99e-21 89.4
Msa0336080 AT4G01540.3 35.897 156 86 5 7 159 7 151 9.18e-21 90.9
Msa0336080 AT3G12977.2 40.385 104 59 2 57 160 12 112 9.95e-21 87.8
Msa0336080 AT4G01540.4 35.897 156 86 5 7 159 7 151 1.19e-20 90.5
Msa0336080 AT4G01540.1 35.897 156 86 5 7 159 7 151 1.31e-20 90.9
Msa0336080 AT4G01540.2 35.897 156 86 5 7 159 7 151 1.39e-20 90.5
Msa0336080 AT1G02230.1 32.911 158 92 4 4 159 3 148 4.27e-20 88.6
Msa0336080 AT5G64530.2 39.394 132 59 7 5 134 4 116 7.36e-20 84.0
Msa0336080 AT5G64530.1 37.879 132 61 6 5 134 4 116 9.39e-20 84.3
Msa0336080 AT1G02250.1 31.013 158 95 4 4 159 3 148 4.95e-19 85.5
Msa0336080 AT1G01010.1 35.461 141 79 4 1 134 1 136 3.01e-18 84.0
Msa0336080 AT1G02220.1 29.630 162 100 4 3 164 2 149 3.82e-17 80.5
Msa0336080 AT2G33480.3 39.216 102 57 3 61 161 5 102 2.00e-16 75.9
Msa0336080 AT3G56530.1 29.299 157 102 4 5 161 53 200 1.12e-15 75.5
Msa0336080 AT4G28530.2 36.364 110 52 2 5 100 11 116 1.68e-14 72.4
Msa0336080 AT2G43000.2 42.500 80 43 2 81 160 11 87 3.17e-14 69.7
Msa0336080 AT5G50820.1 29.814 161 96 5 5 162 18 164 1.63e-13 67.8
Msa0336080 AT3G55210.1 25.595 168 103 5 5 161 12 168 4.02e-13 67.8
Msa0336080 AT3G10490.4 41.026 78 43 2 83 160 2 76 4.70e-13 68.6
Msa0336080 AT3G10490.3 41.026 78 43 2 83 160 2 76 4.70e-13 68.6
Msa0336080 AT2G18060.2 43.836 73 35 2 88 160 2 68 5.89e-13 67.4

Find 79 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCATCAACCCCATTATT+TGG 0.243110 2_4:+55352764 None:intergenic
TGGAATGATGTACCAAATAA+TGG 0.268563 2_4:-55352776 Msa0336080:CDS
ATGAACCTGACGAGCCTCTT+TGG 0.329425 2_4:-55352748 Msa0336080:CDS
TGCTTGCAATCAGCATTTGC+AGG 0.332329 2_4:-55353754 Msa0336080:intron
ACAACAAAGTCATTGGAATA+AGG 0.339902 2_4:-55353588 Msa0336080:CDS
ATATTCATGCATCTTCCATT+TGG 0.343040 2_4:+55353519 None:intergenic
GGAATGATGTACCAAATAAT+GGG 0.347934 2_4:-55352775 Msa0336080:CDS
TCAAGTTGTAAATCCGTCTT+TGG 0.364897 2_4:+55352938 None:intergenic
TGAACCTGACGAGCCTCTTT+GGG 0.365510 2_4:-55352747 Msa0336080:CDS
CCACAAGATGTTGTTCTGTT+TGG 0.369650 2_4:+55353655 None:intergenic
GAACAACATCTTGTGGGTAT+TGG 0.373317 2_4:-55353648 Msa0336080:CDS
TCTTCTAACAACAAAGTCAT+TGG 0.375964 2_4:-55353595 Msa0336080:CDS
GTGTCGCGTTTATGTGATAT+CGG 0.388670 2_4:-55352999 Msa0336080:CDS
CATTCCCAAAGAGGCTCGTC+AGG 0.403826 2_4:+55352743 None:intergenic
CTCAACTCTCTCTCTTGTCT+TGG 0.417219 2_4:+55353688 None:intergenic
GAGGGTCAAGTGGCACGAAT+TGG 0.422284 2_4:-55352796 Msa0336080:CDS
TCCGTCTTTGGCCCCTCTAA+TGG 0.422623 2_4:+55352950 None:intergenic
CCAATACTAAGAGCAGCATC+AGG 0.423681 2_4:+55352818 None:intergenic
ATTTGATCGAAGACCATTAG+AGG 0.450948 2_4:-55352963 Msa0336080:CDS
CAACTAGCTCTTCTTCTGTT+GGG 0.455718 2_4:+55354506 None:intergenic
TACATAGGAAAAGCTCCATC+TGG 0.458200 2_4:-55353550 Msa0336080:CDS
TGACGAGCCTCTTTGGGAAT+GGG 0.462600 2_4:-55352741 Msa0336080:CDS
GTAGGAGGGTTTGTATTGGA+TGG 0.471712 2_4:+55353475 None:intergenic
CCTGATGCTGCTCTTAGTAT+TGG 0.471758 2_4:-55352818 Msa0336080:CDS
TACCGTAGGAGGGTTTGTAT+TGG 0.473282 2_4:+55353471 None:intergenic
CTGACGAGCCTCTTTGGGAA+TGG 0.476253 2_4:-55352742 Msa0336080:CDS
GGATGGGTCGGATGGTTCAA+TGG 0.477851 2_4:+55353492 None:intergenic
CCAACTAGCTCTTCTTCTGT+TGG 0.481441 2_4:+55354505 None:intergenic
TTGTGGGTATTGGAAAGCTA+CGG 0.496227 2_4:-55353638 Msa0336080:CDS
ATACCTGTCATTGATATCAA+TGG 0.504577 2_4:-55354427 Msa0336080:CDS
GATGCTGCTCTTAGTATTGG+AGG 0.510175 2_4:-55352815 Msa0336080:CDS
AATTGTGTTACGTACTTGGA+AGG 0.510602 2_4:+55354389 None:intergenic
TTTGTATTGGATGGGTCGGA+TGG 0.515947 2_4:+55353484 None:intergenic
TACGTACTTGGAAGGTTCCA+TGG 0.519792 2_4:+55354397 None:intergenic
ATCAACTTCCCACTCGGGAG+AGG 0.520204 2_4:-55352855 Msa0336080:CDS
TGTCGCGTTTATGTGATATC+GGG 0.520469 2_4:-55352998 Msa0336080:CDS
AGTTGTTCCCATTCCCAAAG+AGG 0.523806 2_4:+55352734 None:intergenic
CATCTGGAAGGAAAACCAAA+TGG 0.527619 2_4:-55353534 Msa0336080:CDS
TGTGGGTATTGGAAAGCTAC+GGG 0.533051 2_4:-55353637 Msa0336080:CDS
TAGGAGGGTTTGTATTGGAT+GGG 0.533225 2_4:+55353476 None:intergenic
GCTTGCAATCAGCATTTGCA+GGG 0.537472 2_4:-55353753 Msa0336080:intron
ACTTCCCACTCGGGAGAGGT+AGG 0.537886 2_4:-55352851 Msa0336080:CDS
CAAGAGAGAGAGTTGAGAGG+TGG 0.538126 2_4:-55353682 Msa0336080:CDS
AGGGTTTGTATTGGATGGGT+CGG 0.541150 2_4:+55353480 None:intergenic
CCAACAGAAGAAGAGCTAGT+TGG 0.544338 2_4:-55354505 Msa0336080:CDS
ACCATTAGAGGGGCCAAAGA+CGG 0.556327 2_4:-55352951 Msa0336080:CDS
AAGCTTATCAACTTCCCACT+CGG 0.558015 2_4:-55352861 Msa0336080:CDS
ATGCTGCTCTTAGTATTGGA+GGG 0.562893 2_4:-55352814 Msa0336080:CDS
TTGCCATTGATATCAATGAC+AGG 0.570032 2_4:+55354424 None:intergenic
AGCTTATCAACTTCCCACTC+GGG 0.574771 2_4:-55352860 Msa0336080:CDS
TTAGAAGAGTAAACGTAGCT+CGG 0.578607 2_4:+55353610 None:intergenic
ATATCAATGGCAAAGAGCCA+TGG 0.579611 2_4:-55354414 Msa0336080:CDS
CTTAGTATTGGAGGGTCAAG+TGG 0.580571 2_4:-55352806 Msa0336080:CDS
CAAACAGAACAACATCTTGT+GGG 0.582806 2_4:-55353654 Msa0336080:CDS
CTTCTATCTACACAACCAGC+TGG 0.586767 2_4:-55354482 Msa0336080:CDS
CTCTCCCTACCTCTCCCGAG+TGG 0.589368 2_4:+55352846 None:intergenic
CTTCCCACTCGGGAGAGGTA+GGG 0.590713 2_4:-55352850 Msa0336080:CDS
GTTGGGTAGAAACGAAAACC+AGG 0.592948 2_4:+55354523 None:intergenic
TTTGATCGAAGACCATTAGA+GGG 0.593675 2_4:-55352962 Msa0336080:CDS
TCTCCCTACCTCTCCCGAGT+GGG 0.595426 2_4:+55352847 None:intergenic
ATCCAATACAAACCCTCCTA+CGG 0.595712 2_4:-55353473 Msa0336080:intron
CCAAACAGAACAACATCTTG+TGG 0.599917 2_4:-55353655 Msa0336080:CDS
TAGGAAAAGCTCCATCTGGA+AGG 0.600654 2_4:-55353546 Msa0336080:CDS
AACAAGTGCTCATCAACAAG+TGG 0.605093 2_4:-55352903 Msa0336080:CDS
GTCGTGGAGACACAGAGCAA+TGG 0.605650 2_4:-55353723 Msa0336080:CDS
CAATACTAAGAGCAGCATCA+GGG 0.629330 2_4:+55352819 None:intergenic
TATCTACACAACCAGCTGGA+AGG 0.633344 2_4:-55354478 Msa0336080:CDS
CTTGCAATCAGCATTTGCAG+GGG 0.635177 2_4:-55353752 Msa0336080:intron
TTTGCAGGGGAGAGATGTCG+TGG 0.639193 2_4:-55353739 Msa0336080:CDS
CATTGGAATAAGGAAAACCA+TGG 0.660344 2_4:-55353578 Msa0336080:CDS
GTAGAAACGAAAACCAGGGG+GGG 0.660948 2_4:+55354528 None:intergenic
AGACAAGAGAGAGAGTTGAG+AGG 0.669671 2_4:-55353685 Msa0336080:CDS
TTGATCGAAGACCATTAGAG+GGG 0.685119 2_4:-55352961 Msa0336080:CDS
CAAGTGGTAGCAGAGCTCGA+TGG 0.690454 2_4:-55352887 Msa0336080:CDS
GAATGATGTACCAAATAATG+GGG 0.703827 2_4:-55352774 Msa0336080:CDS
GGGTAGAAACGAAAACCAGG+GGG 0.706097 2_4:+55354526 None:intergenic
GGTAGAAACGAAAACCAGGG+GGG 0.708888 2_4:+55354527 None:intergenic
TTGGGTAGAAACGAAAACCA+GGG 0.710968 2_4:+55354524 None:intergenic
TGGGTAGAAACGAAAACCAG+GGG 0.747183 2_4:+55354525 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTTTTTTTTTTTTTTGA+AGG + chr2_4:55353089-55353108 None:intergenic 10.0%
!!! AGAAAAGATTTTTTTTTTTT+AGG - chr2_4:55353288-55353307 Msa0336080:intron 10.0%
!!! CTTATATAATTTTCTTTTTT+AGG + chr2_4:55353377-55353396 None:intergenic 10.0%
!!! AATGTATGATAAATATTTTA+AGG + chr2_4:55353959-55353978 None:intergenic 10.0%
!!! AATTGATCAATAATTTATTT+TGG - chr2_4:55354207-55354226 Msa0336080:intron 10.0%
!!! ATTCTTTTTTTTTTTTTTGA+AGG + chr2_4:55353089-55353108 None:intergenic 10.0%
!!! AGAAAAGATTTTTTTTTTTT+AGG - chr2_4:55353288-55353307 Msa0336080:intron 10.0%
!!! CTTATATAATTTTCTTTTTT+AGG + chr2_4:55353377-55353396 None:intergenic 10.0%
!!! AATGTATGATAAATATTTTA+AGG + chr2_4:55353959-55353978 None:intergenic 10.0%
!!! AATTGATCAATAATTTATTT+TGG - chr2_4:55354207-55354226 Msa0336080:intron 10.0%
!! AAAAGAAAATTATATAAGAC+AGG - chr2_4:55353379-55353398 Msa0336080:intron 15.0%
!! AAAAGAAAATTATATAAGAC+AGG - chr2_4:55353379-55353398 Msa0336080:intron 15.0%
!!! TGAGATAAAATTTTTCTTCA+TGG + chr2_4:55353017-55353036 None:intergenic 20.0%
!!! CTTTTTTTTTTTTTTGAAGG+AGG + chr2_4:55353086-55353105 None:intergenic 20.0%
!!! TCTTTTCTTAAATATGAGAT+TGG + chr2_4:55353276-55353295 None:intergenic 20.0%
!!! ATATACAATAAATTTTGACG+CGG - chr2_4:55354109-55354128 Msa0336080:intron 20.0%
!!! TGAGATAAAATTTTTCTTCA+TGG + chr2_4:55353017-55353036 None:intergenic 20.0%
!!! CTTTTTTTTTTTTTTGAAGG+AGG + chr2_4:55353086-55353105 None:intergenic 20.0%
!!! TCTTTTCTTAAATATGAGAT+TGG + chr2_4:55353276-55353295 None:intergenic 20.0%
!!! ATATACAATAAATTTTGACG+CGG - chr2_4:55354109-55354128 Msa0336080:intron 20.0%
! AAAAAATTGTGTTACGTACT+TGG + chr2_4:55352877-55352896 None:intergenic 25.0%
!!! TTTTTTTTTTTGAAGGAGGA+AGG + chr2_4:55353082-55353101 None:intergenic 25.0%
! TTCTTAAATATGAGATTGGA+GGG + chr2_4:55353272-55353291 None:intergenic 25.0%
! TTTCTTAAATATGAGATTGG+AGG + chr2_4:55353273-55353292 None:intergenic 25.0%
! AGAAAATTATATAAGACAGG+AGG - chr2_4:55353382-55353401 Msa0336080:intron 25.0%
! GAAAATTATATAAGACAGGA+GGG - chr2_4:55353383-55353402 Msa0336080:intron 25.0%
! GTAAATATCTACATGAATGA+CGG + chr2_4:55353430-55353449 None:intergenic 25.0%
!!! TACTTTTTCAAATATACCGT+AGG + chr2_4:55353805-55353824 None:intergenic 25.0%
! GACATATTATTTGAGAATCA+CGG + chr2_4:55353915-55353934 None:intergenic 25.0%
! AAAAAATTGTGTTACGTACT+TGG + chr2_4:55352877-55352896 None:intergenic 25.0%
!!! TTTTTTTTTTTGAAGGAGGA+AGG + chr2_4:55353082-55353101 None:intergenic 25.0%
! TTCTTAAATATGAGATTGGA+GGG + chr2_4:55353272-55353291 None:intergenic 25.0%
! TTTCTTAAATATGAGATTGG+AGG + chr2_4:55353273-55353292 None:intergenic 25.0%
! AGAAAATTATATAAGACAGG+AGG - chr2_4:55353382-55353401 Msa0336080:intron 25.0%
! GAAAATTATATAAGACAGGA+GGG - chr2_4:55353383-55353402 Msa0336080:intron 25.0%
! GTAAATATCTACATGAATGA+CGG + chr2_4:55353430-55353449 None:intergenic 25.0%
!!! TACTTTTTCAAATATACCGT+AGG + chr2_4:55353805-55353824 None:intergenic 25.0%
! GACATATTATTTGAGAATCA+CGG + chr2_4:55353915-55353934 None:intergenic 25.0%
ATACCTGTCATTGATATCAA+TGG - chr2_4:55352832-55352851 Msa0336080:CDS 30.0%
TCTTCTAACAACAAAGTCAT+TGG - chr2_4:55353664-55353683 Msa0336080:CDS 30.0%
ACAACAAAGTCATTGGAATA+AGG - chr2_4:55353671-55353690 Msa0336080:CDS 30.0%
! AAAACCATGGTGTTTTACAT+AGG - chr2_4:55353694-55353713 Msa0336080:CDS 30.0%
! TTTTCCTATGTAAAACACCA+TGG + chr2_4:55353701-55353720 None:intergenic 30.0%
ATATTCATGCATCTTCCATT+TGG + chr2_4:55353743-55353762 None:intergenic 30.0%
! TTTTCAAATATACCGTAGGA+GGG + chr2_4:55353801-55353820 None:intergenic 30.0%
!! TTTTTCAAATATACCGTAGG+AGG + chr2_4:55353802-55353821 None:intergenic 30.0%
!! CTTATTTTTCCCTTCCTTTT+TGG - chr2_4:55353872-55353891 Msa0336080:intron 30.0%
TGGAATGATGTACCAAATAA+TGG - chr2_4:55354483-55354502 Msa0336080:CDS 30.0%
GGAATGATGTACCAAATAAT+GGG - chr2_4:55354484-55354503 Msa0336080:CDS 30.0%
GAATGATGTACCAAATAATG+GGG - chr2_4:55354485-55354504 Msa0336080:CDS 30.0%
ATACCTGTCATTGATATCAA+TGG - chr2_4:55352832-55352851 Msa0336080:CDS 30.0%
TCTTCTAACAACAAAGTCAT+TGG - chr2_4:55353664-55353683 Msa0336080:CDS 30.0%
ACAACAAAGTCATTGGAATA+AGG - chr2_4:55353671-55353690 Msa0336080:CDS 30.0%
! AAAACCATGGTGTTTTACAT+AGG - chr2_4:55353694-55353713 Msa0336080:CDS 30.0%
! TTTTCCTATGTAAAACACCA+TGG + chr2_4:55353701-55353720 None:intergenic 30.0%
ATATTCATGCATCTTCCATT+TGG + chr2_4:55353743-55353762 None:intergenic 30.0%
! TTTTCAAATATACCGTAGGA+GGG + chr2_4:55353801-55353820 None:intergenic 30.0%
!! TTTTTCAAATATACCGTAGG+AGG + chr2_4:55353802-55353821 None:intergenic 30.0%
!! CTTATTTTTCCCTTCCTTTT+TGG - chr2_4:55353872-55353891 Msa0336080:intron 30.0%
TGGAATGATGTACCAAATAA+TGG - chr2_4:55354483-55354502 Msa0336080:CDS 30.0%
GGAATGATGTACCAAATAAT+GGG - chr2_4:55354484-55354503 Msa0336080:CDS 30.0%
GAATGATGTACCAAATAATG+GGG - chr2_4:55354485-55354504 Msa0336080:CDS 30.0%
TTGCCATTGATATCAATGAC+AGG + chr2_4:55352838-55352857 None:intergenic 35.0%
AATTGTGTTACGTACTTGGA+AGG + chr2_4:55352873-55352892 None:intergenic 35.0%
CAAACAGAACAACATCTTGT+GGG - chr2_4:55353605-55353624 Msa0336080:CDS 35.0%
TTAGAAGAGTAAACGTAGCT+CGG + chr2_4:55353652-55353671 None:intergenic 35.0%
CATTGGAATAAGGAAAACCA+TGG - chr2_4:55353681-55353700 Msa0336080:CDS 35.0%
AACATAACCACGATCCAAAA+AGG + chr2_4:55353889-55353908 None:intergenic 35.0%
ATCGCATTTAGTAGCATTGT+AGG + chr2_4:55354050-55354069 None:intergenic 35.0%
ATTTGATCGAAGACCATTAG+AGG - chr2_4:55354296-55354315 Msa0336080:intron 35.0%
TTTGATCGAAGACCATTAGA+GGG - chr2_4:55354297-55354316 Msa0336080:intron 35.0%
! TCAAGTTGTAAATCCGTCTT+TGG + chr2_4:55354324-55354343 None:intergenic 35.0%
TTGCCATTGATATCAATGAC+AGG + chr2_4:55352838-55352857 None:intergenic 35.0%
AATTGTGTTACGTACTTGGA+AGG + chr2_4:55352873-55352892 None:intergenic 35.0%
CAAACAGAACAACATCTTGT+GGG - chr2_4:55353605-55353624 Msa0336080:CDS 35.0%
TTAGAAGAGTAAACGTAGCT+CGG + chr2_4:55353652-55353671 None:intergenic 35.0%
CATTGGAATAAGGAAAACCA+TGG - chr2_4:55353681-55353700 Msa0336080:CDS 35.0%
AACATAACCACGATCCAAAA+AGG + chr2_4:55353889-55353908 None:intergenic 35.0%
ATCGCATTTAGTAGCATTGT+AGG + chr2_4:55354050-55354069 None:intergenic 35.0%
ATTTGATCGAAGACCATTAG+AGG - chr2_4:55354296-55354315 Msa0336080:intron 35.0%
TTTGATCGAAGACCATTAGA+GGG - chr2_4:55354297-55354316 Msa0336080:intron 35.0%
! TCAAGTTGTAAATCCGTCTT+TGG + chr2_4:55354324-55354343 None:intergenic 35.0%
TTGGGTAGAAACGAAAACCA+GGG + chr2_4:55352738-55352757 None:intergenic 40.0%
! CAACTAGCTCTTCTTCTGTT+GGG + chr2_4:55352756-55352775 None:intergenic 40.0%
ATATCAATGGCAAAGAGCCA+TGG - chr2_4:55352845-55352864 Msa0336080:CDS 40.0%
CCACAAGATGTTGTTCTGTT+TGG + chr2_4:55353607-55353626 None:intergenic 40.0%
CCAAACAGAACAACATCTTG+TGG - chr2_4:55353604-55353623 Msa0336080:CDS 40.0%
GAACAACATCTTGTGGGTAT+TGG - chr2_4:55353611-55353630 Msa0336080:CDS 40.0%
!! TTGTGGGTATTGGAAAGCTA+CGG - chr2_4:55353621-55353640 Msa0336080:CDS 40.0%
TACATAGGAAAAGCTCCATC+TGG - chr2_4:55353709-55353728 Msa0336080:CDS 40.0%
!!! CATTTGGTTTTCCTTCCAGA+TGG + chr2_4:55353727-55353746 None:intergenic 40.0%
CATCTGGAAGGAAAACCAAA+TGG - chr2_4:55353725-55353744 Msa0336080:CDS 40.0%
TAGGAGGGTTTGTATTGGAT+GGG + chr2_4:55353786-55353805 None:intergenic 40.0%
ATCCAATACAAACCCTCCTA+CGG - chr2_4:55353786-55353805 Msa0336080:intron 40.0%
AACCACGATCCAAAAAGGAA+GGG + chr2_4:55353884-55353903 None:intergenic 40.0%
TAACCACGATCCAAAAAGGA+AGG + chr2_4:55353885-55353904 None:intergenic 40.0%
GTGTCGCGTTTATGTGATAT+CGG - chr2_4:55354260-55354279 Msa0336080:intron 40.0%
TGTCGCGTTTATGTGATATC+GGG - chr2_4:55354261-55354280 Msa0336080:intron 40.0%
TTGATCGAAGACCATTAGAG+GGG - chr2_4:55354298-55354317 Msa0336080:intron 40.0%
AACAAGTGCTCATCAACAAG+TGG - chr2_4:55354356-55354375 Msa0336080:intron 40.0%
AAGCTTATCAACTTCCCACT+CGG - chr2_4:55354398-55354417 Msa0336080:intron 40.0%
CAATACTAAGAGCAGCATCA+GGG + chr2_4:55354443-55354462 None:intergenic 40.0%
! ATGCTGCTCTTAGTATTGGA+GGG - chr2_4:55354445-55354464 Msa0336080:CDS 40.0%
GGTTCATCAACCCCATTATT+TGG + chr2_4:55354498-55354517 None:intergenic 40.0%
TTGGGTAGAAACGAAAACCA+GGG + chr2_4:55352738-55352757 None:intergenic 40.0%
! CAACTAGCTCTTCTTCTGTT+GGG + chr2_4:55352756-55352775 None:intergenic 40.0%
ATATCAATGGCAAAGAGCCA+TGG - chr2_4:55352845-55352864 Msa0336080:CDS 40.0%
CCACAAGATGTTGTTCTGTT+TGG + chr2_4:55353607-55353626 None:intergenic 40.0%
CCAAACAGAACAACATCTTG+TGG - chr2_4:55353604-55353623 Msa0336080:CDS 40.0%
GAACAACATCTTGTGGGTAT+TGG - chr2_4:55353611-55353630 Msa0336080:CDS 40.0%
!! TTGTGGGTATTGGAAAGCTA+CGG - chr2_4:55353621-55353640 Msa0336080:CDS 40.0%
TACATAGGAAAAGCTCCATC+TGG - chr2_4:55353709-55353728 Msa0336080:CDS 40.0%
!!! CATTTGGTTTTCCTTCCAGA+TGG + chr2_4:55353727-55353746 None:intergenic 40.0%
CATCTGGAAGGAAAACCAAA+TGG - chr2_4:55353725-55353744 Msa0336080:CDS 40.0%
TAGGAGGGTTTGTATTGGAT+GGG + chr2_4:55353786-55353805 None:intergenic 40.0%
ATCCAATACAAACCCTCCTA+CGG - chr2_4:55353786-55353805 Msa0336080:intron 40.0%
AACCACGATCCAAAAAGGAA+GGG + chr2_4:55353884-55353903 None:intergenic 40.0%
TAACCACGATCCAAAAAGGA+AGG + chr2_4:55353885-55353904 None:intergenic 40.0%
GTGTCGCGTTTATGTGATAT+CGG - chr2_4:55354260-55354279 Msa0336080:intron 40.0%
TGTCGCGTTTATGTGATATC+GGG - chr2_4:55354261-55354280 Msa0336080:intron 40.0%
TTGATCGAAGACCATTAGAG+GGG - chr2_4:55354298-55354317 Msa0336080:intron 40.0%
AACAAGTGCTCATCAACAAG+TGG - chr2_4:55354356-55354375 Msa0336080:intron 40.0%
AAGCTTATCAACTTCCCACT+CGG - chr2_4:55354398-55354417 Msa0336080:intron 40.0%
CAATACTAAGAGCAGCATCA+GGG + chr2_4:55354443-55354462 None:intergenic 40.0%
! ATGCTGCTCTTAGTATTGGA+GGG - chr2_4:55354445-55354464 Msa0336080:CDS 40.0%
GGTTCATCAACCCCATTATT+TGG + chr2_4:55354498-55354517 None:intergenic 40.0%
TGGGTAGAAACGAAAACCAG+GGG + chr2_4:55352737-55352756 None:intergenic 45.0%
GTTGGGTAGAAACGAAAACC+AGG + chr2_4:55352739-55352758 None:intergenic 45.0%
! CCAACTAGCTCTTCTTCTGT+TGG + chr2_4:55352757-55352776 None:intergenic 45.0%
CCAACAGAAGAAGAGCTAGT+TGG - chr2_4:55352754-55352773 Msa0336080:CDS 45.0%
CTTCTATCTACACAACCAGC+TGG - chr2_4:55352777-55352796 Msa0336080:CDS 45.0%
TATCTACACAACCAGCTGGA+AGG - chr2_4:55352781-55352800 Msa0336080:CDS 45.0%
TACGTACTTGGAAGGTTCCA+TGG + chr2_4:55352865-55352884 None:intergenic 45.0%
TGCTTGCAATCAGCATTTGC+AGG - chr2_4:55353505-55353524 Msa0336080:CDS 45.0%
GCTTGCAATCAGCATTTGCA+GGG - chr2_4:55353506-55353525 Msa0336080:CDS 45.0%
CTTGCAATCAGCATTTGCAG+GGG - chr2_4:55353507-55353526 Msa0336080:CDS 45.0%
CTCAACTCTCTCTCTTGTCT+TGG + chr2_4:55353574-55353593 None:intergenic 45.0%
AGACAAGAGAGAGAGTTGAG+AGG - chr2_4:55353574-55353593 Msa0336080:CDS 45.0%
!! TGTGGGTATTGGAAAGCTAC+GGG - chr2_4:55353622-55353641 Msa0336080:CDS 45.0%
TAGGAAAAGCTCCATCTGGA+AGG - chr2_4:55353713-55353732 Msa0336080:CDS 45.0%
TTTGTATTGGATGGGTCGGA+TGG + chr2_4:55353778-55353797 None:intergenic 45.0%
AGGGTTTGTATTGGATGGGT+CGG + chr2_4:55353782-55353801 None:intergenic 45.0%
GTAGGAGGGTTTGTATTGGA+TGG + chr2_4:55353787-55353806 None:intergenic 45.0%
TACCGTAGGAGGGTTTGTAT+TGG + chr2_4:55353791-55353810 None:intergenic 45.0%
! TTCCCTTCCTTTTTGGATCG+TGG - chr2_4:55353879-55353898 Msa0336080:intron 45.0%
AGCTTATCAACTTCCCACTC+GGG - chr2_4:55354399-55354418 Msa0336080:intron 45.0%
CCAATACTAAGAGCAGCATC+AGG + chr2_4:55354444-55354463 None:intergenic 45.0%
CCTGATGCTGCTCTTAGTAT+TGG - chr2_4:55354441-55354460 Msa0336080:CDS 45.0%
! GATGCTGCTCTTAGTATTGG+AGG - chr2_4:55354444-55354463 Msa0336080:CDS 45.0%
! CTTAGTATTGGAGGGTCAAG+TGG - chr2_4:55354453-55354472 Msa0336080:CDS 45.0%
AGTTGTTCCCATTCCCAAAG+AGG + chr2_4:55354528-55354547 None:intergenic 45.0%
TGGGTAGAAACGAAAACCAG+GGG + chr2_4:55352737-55352756 None:intergenic 45.0%
GTTGGGTAGAAACGAAAACC+AGG + chr2_4:55352739-55352758 None:intergenic 45.0%
! CCAACTAGCTCTTCTTCTGT+TGG + chr2_4:55352757-55352776 None:intergenic 45.0%
CCAACAGAAGAAGAGCTAGT+TGG - chr2_4:55352754-55352773 Msa0336080:CDS 45.0%
CTTCTATCTACACAACCAGC+TGG - chr2_4:55352777-55352796 Msa0336080:CDS 45.0%
TATCTACACAACCAGCTGGA+AGG - chr2_4:55352781-55352800 Msa0336080:CDS 45.0%
TACGTACTTGGAAGGTTCCA+TGG + chr2_4:55352865-55352884 None:intergenic 45.0%
TGCTTGCAATCAGCATTTGC+AGG - chr2_4:55353505-55353524 Msa0336080:CDS 45.0%
GCTTGCAATCAGCATTTGCA+GGG - chr2_4:55353506-55353525 Msa0336080:CDS 45.0%
CTTGCAATCAGCATTTGCAG+GGG - chr2_4:55353507-55353526 Msa0336080:CDS 45.0%
CTCAACTCTCTCTCTTGTCT+TGG + chr2_4:55353574-55353593 None:intergenic 45.0%
AGACAAGAGAGAGAGTTGAG+AGG - chr2_4:55353574-55353593 Msa0336080:CDS 45.0%
!! TGTGGGTATTGGAAAGCTAC+GGG - chr2_4:55353622-55353641 Msa0336080:CDS 45.0%
TAGGAAAAGCTCCATCTGGA+AGG - chr2_4:55353713-55353732 Msa0336080:CDS 45.0%
TTTGTATTGGATGGGTCGGA+TGG + chr2_4:55353778-55353797 None:intergenic 45.0%
AGGGTTTGTATTGGATGGGT+CGG + chr2_4:55353782-55353801 None:intergenic 45.0%
GTAGGAGGGTTTGTATTGGA+TGG + chr2_4:55353787-55353806 None:intergenic 45.0%
TACCGTAGGAGGGTTTGTAT+TGG + chr2_4:55353791-55353810 None:intergenic 45.0%
! TTCCCTTCCTTTTTGGATCG+TGG - chr2_4:55353879-55353898 Msa0336080:intron 45.0%
AGCTTATCAACTTCCCACTC+GGG - chr2_4:55354399-55354418 Msa0336080:intron 45.0%
CCAATACTAAGAGCAGCATC+AGG + chr2_4:55354444-55354463 None:intergenic 45.0%
CCTGATGCTGCTCTTAGTAT+TGG - chr2_4:55354441-55354460 Msa0336080:CDS 45.0%
! GATGCTGCTCTTAGTATTGG+AGG - chr2_4:55354444-55354463 Msa0336080:CDS 45.0%
! CTTAGTATTGGAGGGTCAAG+TGG - chr2_4:55354453-55354472 Msa0336080:CDS 45.0%
AGTTGTTCCCATTCCCAAAG+AGG + chr2_4:55354528-55354547 None:intergenic 45.0%
!! AAAAAAAAGAATATTATAAA+CGG - chr2_4:55353097-55353116 Msa0336080:intron 5.0%
!! TTATATACAAATAATTATTT+CGG - chr2_4:55353237-55353256 Msa0336080:intron 5.0%
!! AAAAAAAAGAATATTATAAA+CGG - chr2_4:55353097-55353116 Msa0336080:intron 5.0%
!! TTATATACAAATAATTATTT+CGG - chr2_4:55353237-55353256 Msa0336080:intron 5.0%
GTAGAAACGAAAACCAGGGG+GGG + chr2_4:55352734-55352753 None:intergenic 50.0%
GGTAGAAACGAAAACCAGGG+GGG + chr2_4:55352735-55352754 None:intergenic 50.0%
GGGTAGAAACGAAAACCAGG+GGG + chr2_4:55352736-55352755 None:intergenic 50.0%
! CATGCTTTTGTCCTTCCAGC+TGG + chr2_4:55352795-55352814 None:intergenic 50.0%
CAAGAGAGAGAGTTGAGAGG+TGG - chr2_4:55353577-55353596 Msa0336080:CDS 50.0%
ACCATTAGAGGGGCCAAAGA+CGG - chr2_4:55354308-55354327 Msa0336080:intron 50.0%
ATGAACCTGACGAGCCTCTT+TGG - chr2_4:55354511-55354530 Msa0336080:CDS 50.0%
TGAACCTGACGAGCCTCTTT+GGG - chr2_4:55354512-55354531 Msa0336080:CDS 50.0%
! TGACGAGCCTCTTTGGGAAT+GGG - chr2_4:55354518-55354537 Msa0336080:CDS 50.0%
GTAGAAACGAAAACCAGGGG+GGG + chr2_4:55352734-55352753 None:intergenic 50.0%
GGTAGAAACGAAAACCAGGG+GGG + chr2_4:55352735-55352754 None:intergenic 50.0%
GGGTAGAAACGAAAACCAGG+GGG + chr2_4:55352736-55352755 None:intergenic 50.0%
! CATGCTTTTGTCCTTCCAGC+TGG + chr2_4:55352795-55352814 None:intergenic 50.0%
CAAGAGAGAGAGTTGAGAGG+TGG - chr2_4:55353577-55353596 Msa0336080:CDS 50.0%
ACCATTAGAGGGGCCAAAGA+CGG - chr2_4:55354308-55354327 Msa0336080:intron 50.0%
ATGAACCTGACGAGCCTCTT+TGG - chr2_4:55354511-55354530 Msa0336080:CDS 50.0%
TGAACCTGACGAGCCTCTTT+GGG - chr2_4:55354512-55354531 Msa0336080:CDS 50.0%
! TGACGAGCCTCTTTGGGAAT+GGG - chr2_4:55354518-55354537 Msa0336080:CDS 50.0%
TTTGCAGGGGAGAGATGTCG+TGG - chr2_4:55353520-55353539 Msa0336080:CDS 55.0%
GTCGTGGAGACACAGAGCAA+TGG - chr2_4:55353536-55353555 Msa0336080:CDS 55.0%
GGATGGGTCGGATGGTTCAA+TGG + chr2_4:55353770-55353789 None:intergenic 55.0%
TCCGTCTTTGGCCCCTCTAA+TGG + chr2_4:55354312-55354331 None:intergenic 55.0%
CAAGTGGTAGCAGAGCTCGA+TGG - chr2_4:55354372-55354391 Msa0336080:intron 55.0%
ATCAACTTCCCACTCGGGAG+AGG - chr2_4:55354404-55354423 Msa0336080:CDS 55.0%
GAGGGTCAAGTGGCACGAAT+TGG - chr2_4:55354463-55354482 Msa0336080:CDS 55.0%
CATTCCCAAAGAGGCTCGTC+AGG + chr2_4:55354519-55354538 None:intergenic 55.0%
! CTGACGAGCCTCTTTGGGAA+TGG - chr2_4:55354517-55354536 Msa0336080:CDS 55.0%
TTTGCAGGGGAGAGATGTCG+TGG - chr2_4:55353520-55353539 Msa0336080:CDS 55.0%
GTCGTGGAGACACAGAGCAA+TGG - chr2_4:55353536-55353555 Msa0336080:CDS 55.0%
GGATGGGTCGGATGGTTCAA+TGG + chr2_4:55353770-55353789 None:intergenic 55.0%
TCCGTCTTTGGCCCCTCTAA+TGG + chr2_4:55354312-55354331 None:intergenic 55.0%
CAAGTGGTAGCAGAGCTCGA+TGG - chr2_4:55354372-55354391 Msa0336080:intron 55.0%
ATCAACTTCCCACTCGGGAG+AGG - chr2_4:55354404-55354423 Msa0336080:CDS 55.0%
GAGGGTCAAGTGGCACGAAT+TGG - chr2_4:55354463-55354482 Msa0336080:CDS 55.0%
CATTCCCAAAGAGGCTCGTC+AGG + chr2_4:55354519-55354538 None:intergenic 55.0%
! CTGACGAGCCTCTTTGGGAA+TGG - chr2_4:55354517-55354536 Msa0336080:CDS 55.0%
ACTTCCCACTCGGGAGAGGT+AGG - chr2_4:55354408-55354427 Msa0336080:CDS 60.0%
CTTCCCACTCGGGAGAGGTA+GGG - chr2_4:55354409-55354428 Msa0336080:CDS 60.0%
TCTCCCTACCTCTCCCGAGT+GGG + chr2_4:55354415-55354434 None:intergenic 60.0%
ACTTCCCACTCGGGAGAGGT+AGG - chr2_4:55354408-55354427 Msa0336080:CDS 60.0%
CTTCCCACTCGGGAGAGGTA+GGG - chr2_4:55354409-55354428 Msa0336080:CDS 60.0%
TCTCCCTACCTCTCCCGAGT+GGG + chr2_4:55354415-55354434 None:intergenic 60.0%
CTCTCCCTACCTCTCCCGAG+TGG + chr2_4:55354416-55354435 None:intergenic 65.0%
CTCTCCCTACCTCTCCCGAG+TGG + chr2_4:55354416-55354435 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55352721 55354560 55352721 ID=Msa0336080;Name=Msa0336080
chr2_4 mRNA 55352721 55354560 55352721 ID=Msa0336080-mRNA-1;Parent=Msa0336080;Name=Msa0336080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|255
chr2_4 exon 55354404 55354560 55354404 ID=Msa0336080-mRNA-1:exon:16781;Parent=Msa0336080-mRNA-1
chr2_4 exon 55353474 55353763 55353474 ID=Msa0336080-mRNA-1:exon:16780;Parent=Msa0336080-mRNA-1
chr2_4 exon 55352721 55353041 55352721 ID=Msa0336080-mRNA-1:exon:16779;Parent=Msa0336080-mRNA-1
chr2_4 CDS 55354404 55354560 55354404 ID=Msa0336080-mRNA-1:cds;Parent=Msa0336080-mRNA-1
chr2_4 CDS 55353474 55353763 55353474 ID=Msa0336080-mRNA-1:cds;Parent=Msa0336080-mRNA-1
chr2_4 CDS 55352721 55353041 55352721 ID=Msa0336080-mRNA-1:cds;Parent=Msa0336080-mRNA-1
Gene Sequence

>Msa0336080

ATGGAGGATTCCCCCCCTGGTTTTCGTTTCTACCCAACAGAAGAAGAGCTAGTTGGCTTCTATCTACACAACCAGCTGGAAGGACAAAAGCATGAAGACATAAACAAAATCATACCTGTCATTGATATCAATGGCAAAGAGCCATGGAACCTTCCAACATTTGCAGGGGAGAGATGTCGTGGAGACACAGAGCAATGGTTTTTCTTTTCACCAAGACAAGAGAGAGAGTTGAGAGGTGGAAGACCAAACAGAACAACATCTTGTGGGTATTGGAAAGCTACGGGTTCTCCGAGCTACGTTTACTCTTCTAACAACAAAGTCATTGGAATAAGGAAAACCATGGTGTTTTACATAGGAAAAGCTCCATCTGGAAGGAAAACCAAATGGAAGATGCATGAATATAAAGCCATTGAACCATCCGACCCATCCAATACAAACCCTCCTACGCTGCGACACGAATTCAGCTTGTGTCGCGTTTATGTGATATCGGGAAGCTTTAGTTCATTTGATCGAAGACCATTAGAGGGGCCAAAGACGGATTTACAACTTGATCATGTTGCTTCAACAAGTGCTCATCAACAAGTGGTAGCAGAGCTCGATGGATCAAGCTTATCAACTTCCCACTCGGGAGAGGTAGGGAGAGACGACCCTGATGCTGCTCTTAGTATTGGAGGGTCAAGTGGCACGAATTGGAATGATGTACCAAATAATGGGGTTGATGAACCTGACGAGCCTCTTTGGGAATGGGAACAACTAAATTTGATCTAA
Protein sequence

>Msa0336080

MEDSPPGFRFYPTEEELVGFYLHNQLEGQKHEDINKIIPVIDINGKEPWNLPTFAGERCRGDTEQWFFFSPRQERELRGGRPNRTTSCGYWKATGSPSYVYSSNNKVIGIRKTMVFYIGKAPSGRKTKWKMHEYKAIEPSDPSNTNPPTLRHEFSLCRVYVISGSFSSFDRRPLEGPKTDLQLDHVASTSAHQQVVAELDGSSLSTSHSGEVGRDDPDAALSIGGSSGTNWNDVPNNGVDEPDEPLWEWEQLNLI*