AlfalfaGEDB | Msa0337260

M. sativa cultivar zhongmu-4 / Msa0337260

KEGG: -
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
PFAM: PF01426.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337260	XP_024631410.1	92.000	200	16	0	1	200	1	200	5.16e-136	389

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337260	sp\|F4JL28\|EBS_ARATH	59.296	199	68	3	10	197	1	197	2.02e-74	227

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification
Msa0337260	TR	PHD

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337260	MtrunA17_Chr2g0324381	92.000	200	16	0	1	200	1	200	4.75e-140	389
Msa0337260	MtrunA17_Chr2g0316511	63.874	191	64	3	10	197	1	189	8.12e-75	224
Msa0337260	MtrunA17_Chr3g0145031	51.562	192	85	5	10	195	1	190	1.12e-62	193
Msa0337260	MtrunA17_Chr3g0145041	51.136	176	80	3	25	199	2	172	1.34e-56	177
Msa0337260	MtrunA17_Chr2g0324361	67.708	96	29	1	34	129	14	107	3.50e-40	132
Msa0337260	MtrunA17_Chr5g0447451	43.119	109	53	3	82	181	20	128	2.26e-21	85.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0337260	AT4G22140.2	59.296	199	68	3	10	197	1	197	1.44e-75	227
Msa0337260	AT4G22140.1	59.296	199	68	3	10	197	1	197	2.05e-75	227
Msa0337260	AT4G22140.3	59.296	199	68	3	10	197	1	197	2.05e-75	227
Msa0337260	AT4G39100.1	51.099	182	85	3	21	200	14	193	2.91e-61	191
Msa0337260	AT4G04260.2	56.970	165	67	3	34	197	10	171	1.13e-54	173
Msa0337260	AT4G04260.1	57.895	152	61	2	46	197	10	158	5.63e-52	166
Msa0337260	AT4G39100.2	54.362	149	66	2	21	167	14	162	9.51e-52	164
Msa0337260	AT4G04260.3	54.286	140	60	3	10	145	1	140	2.90e-41	137

Find 54 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTCACCTGATTTAA+AGG	0.193987	2_4:-57223161	Msa0337260:CDS
AAAGGCATGCCCACGCATTT+AGG	0.253844	2_4:+57223226	None:intergenic
ACGATTACTTTAGCAGGTTC+TGG	0.332292	2_4:-57223662	Msa0337260:CDS
ATTAACCTATCCGGGTTATA+AGG	0.334701	2_4:+57223472	None:intergenic
TTATAACCCGGATAGGTTAA+TGG	0.355817	2_4:-57223470	Msa0337260:CDS
TAAAATCGACGCCATCGATT+AGG	0.368427	2_4:+57224558	None:intergenic
GATTTCATTGCTTCATCAAA+AGG	0.383487	2_4:+57223208	None:intergenic
ACTTACACTTCAACGCGTTC+AGG	0.403385	2_4:+57223612	None:intergenic
CACAGCACCATTAACCTATC+CGG	0.404617	2_4:+57223463	None:intergenic
AGTCTCTAATCCTTTAAATC+AGG	0.419941	2_4:+57223151	None:intergenic
CGCATTCTGTTTCTGAGAAA+GGG	0.423600	2_4:+57224460	None:intergenic
GCGCATTCTGTTTCTGAGAA+AGG	0.438042	2_4:+57224459	None:intergenic
TTGGTTTGTTCCTGCCAGTA+TGG	0.439578	2_4:+57223913	None:intergenic
CGACAACAAGGCAAGGGAAA+AGG	0.450024	2_4:-57224411	Msa0337260:CDS
AAAACATACGCGTCCTTCAA+TGG	0.453876	2_4:+57223806	None:intergenic
GGCACCAACATGGTCGTTAG+AGG	0.475160	2_4:-57224370	Msa0337260:intron
GTGCTAACGATTACTTTAGC+AGG	0.480077	2_4:-57223668	Msa0337260:CDS
CAGCAACCTACAGAACATAA+TGG	0.494473	2_4:-57224434	Msa0337260:CDS
AGGATAATATGAACAGAATG+AGG	0.500778	2_4:-57223863	Msa0337260:CDS
CAATGAGCTAGTCTGCATAC+TGG	0.502628	2_4:-57223045	Msa0337260:three_prime_UTR
CGTCCTTCAATGGTTTCCTC+AGG	0.503827	2_4:+57223816	None:intergenic
AAAAGGAACAAATACACAAT+CGG	0.520774	2_4:-57224394	Msa0337260:CDS
ACCACAACTAGCTGCTCAAA+GGG	0.523955	2_4:+57223071	None:intergenic
CATAGTGCTGACACAATTGA+AGG	0.525786	2_4:-57223741	Msa0337260:CDS
TACATGAAGCTTGAAGTTGT+AGG	0.537934	2_4:-57223690	Msa0337260:CDS
TTGTCGCCATTATGTTCTGT+AGG	0.543808	2_4:+57224428	None:intergenic
CGACCTGAGGAAACCATTGA+AGG	0.551081	2_4:-57223819	Msa0337260:CDS
AAATGCCTTATAACCCGGAT+AGG	0.557757	2_4:-57223477	Msa0337260:CDS
TTTGAGCAGCTAGTTGTGGT+TGG	0.559763	2_4:-57223068	Msa0337260:three_prime_UTR
GAATGAGGGTCTATGTAAGA+AGG	0.562196	2_4:-57223848	Msa0337260:CDS
CCGTGTGGAAAAGATTGAGC+AGG	0.565789	2_4:-57223883	Msa0337260:CDS
AACCACAACTAGCTGCTCAA+AGG	0.567927	2_4:+57223070	None:intergenic
TTATGTTCTGTAGGTTGCTG+CGG	0.575653	2_4:+57224437	None:intergenic
AAAAGGAATTACCTAATCGA+TGG	0.579467	2_4:-57224569	Msa0337260:five_prime_UTR
CAGGTACCATCCTAAATGCG+TGG	0.581382	2_4:-57223236	Msa0337260:CDS
ACAGCACCATTAACCTATCC+GGG	0.588194	2_4:+57223464	None:intergenic
ACCCTTTGAGCAGCTAGTTG+TGG	0.595450	2_4:-57223072	Msa0337260:three_prime_UTR
ATGTGAAATGCCTTATAACC+CGG	0.595533	2_4:-57223482	Msa0337260:CDS
GAAACAGTAGGCAACTTCCA+TGG	0.608176	2_4:+57223019	None:intergenic
GCATGCCCACGCATTTAGGA+TGG	0.615056	2_4:+57223230	None:intergenic
ATAATGGCGACAACAAGGCA+AGG	0.623162	2_4:-57224418	Msa0337260:CDS
AGGTACCATCCTAAATGCGT+GGG	0.636148	2_4:-57223235	Msa0337260:CDS
AGAACATAATGGCGACAACA+AGG	0.636635	2_4:-57224423	Msa0337260:CDS
CACAATCGGAGGCACCAACA+TGG	0.643910	2_4:-57224380	Msa0337260:CDS
TGTGTGGAAGTTGCAATCAA+AGG	0.645860	2_4:-57223444	Msa0337260:intron
ATTACCTCTAACGACCATGT+TGG	0.647388	2_4:+57224366	None:intergenic
GGATAATATGAACAGAATGA+GGG	0.654950	2_4:-57223862	Msa0337260:CDS
ATAGTGCTGACACAATTGAA+GGG	0.668881	2_4:-57223740	Msa0337260:CDS
AGTCTGCATACTGGATACCA+TGG	0.673066	2_4:-57223036	Msa0337260:three_prime_UTR
TAATGGCGACAACAAGGCAA+GGG	0.678546	2_4:-57224417	Msa0337260:CDS
AGGAACAAATACACAATCGG+AGG	0.686184	2_4:-57224391	Msa0337260:CDS
CAAACCAATCATAGCCCGTG+TGG	0.703357	2_4:-57223898	Msa0337260:CDS
AAGAAGGTATTATCGACCTG+AGG	0.704026	2_4:-57223832	Msa0337260:CDS
GATAGGTTAATGGTGCTGTG+TGG	0.736018	2_4:-57223460	Msa0337260:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAGTTAAAGAAAATAAAAA+AGG	-	chr2_4:57223071-57223090	Msa0337260:three_prime_UTR	10.0%
!!	AAAGTTAAAGAAAATAAAAA+AGG	-	chr2_4:57223071-57223090	Msa0337260:three_prime_UTR	10.0%
!!	GAAAAATTAATTAGGTTTAA+TGG	+	chr2_4:57223162-57223181	None:intergenic	15.0%
!!!	AAACCTAATTAATTTTTCAT+AGG	-	chr2_4:57223164-57223183	Msa0337260:CDS	15.0%
!!!	TTTTTTTTGAATAGATTCAT+GGG	+	chr2_4:57223029-57223048	None:intergenic	15.0%
!!	GAAAAATTAATTAGGTTTAA+TGG	+	chr2_4:57223162-57223181	None:intergenic	15.0%
!!!	AAACCTAATTAATTTTTCAT+AGG	-	chr2_4:57223164-57223183	Msa0337260:CDS	15.0%
!!!	AAACACTGATATTTTTTTCT+AGG	-	chr2_4:57224070-57224089	Msa0337260:intron	20.0%
!!!	AACACTGATATTTTTTTCTA+GGG	-	chr2_4:57224071-57224090	Msa0337260:intron	20.0%
!!!	ATTTTACTTTTATGTTTCGA+AGG	-	chr2_4:57224144-57224163	Msa0337260:intron	20.0%
!!	TGTATAATGAATTATTATGC+AGG	-	chr2_4:57224260-57224279	Msa0337260:intron	20.0%
!!!	TTGTTTTAATGAATGTATGA+TGG	+	chr2_4:57224296-57224315	None:intergenic	20.0%
!!!	GTTTTTTTTGAATAGATTCA+TGG	+	chr2_4:57223030-57223049	None:intergenic	20.0%
!!!	AAACACTGATATTTTTTTCT+AGG	-	chr2_4:57224070-57224089	Msa0337260:intron	20.0%
!!!	AACACTGATATTTTTTTCTA+GGG	-	chr2_4:57224071-57224090	Msa0337260:intron	20.0%
!!!	ATTTTACTTTTATGTTTCGA+AGG	-	chr2_4:57224144-57224163	Msa0337260:intron	20.0%
!!	TGTATAATGAATTATTATGC+AGG	-	chr2_4:57224260-57224279	Msa0337260:intron	20.0%
!!!	TTGTTTTAATGAATGTATGA+TGG	+	chr2_4:57224296-57224315	None:intergenic	20.0%
!	CTGCCTATGAAAAATTAATT+AGG	+	chr2_4:57223170-57223189	None:intergenic	25.0%
!	AAAAGGAACAAATACACAAT+CGG	-	chr2_4:57223263-57223282	Msa0337260:intron	25.0%
!	AAGTAGATAGTTCAAAAACA+TGG	-	chr2_4:57223390-57223409	Msa0337260:intron	25.0%
!!!	ACACTGATATTTTTTTCTAG+GGG	-	chr2_4:57224072-57224091	Msa0337260:intron	25.0%
!!	ATCAAAGGTAAATTGGATTT+TGG	-	chr2_4:57224228-57224247	Msa0337260:intron	25.0%
!!	TCAAAGGTAAATTGGATTTT+GGG	-	chr2_4:57224229-57224248	Msa0337260:intron	25.0%
!	GAAATATTTCAATTTCTTGC+AGG	-	chr2_4:57224402-57224421	Msa0337260:CDS	25.0%
!	AAAATGTTCACCTGATTTAA+AGG	-	chr2_4:57224496-57224515	Msa0337260:five_prime_UTR	25.0%
!	CTGCCTATGAAAAATTAATT+AGG	+	chr2_4:57223170-57223189	None:intergenic	25.0%
!	AAAAGGAACAAATACACAAT+CGG	-	chr2_4:57223263-57223282	Msa0337260:intron	25.0%
!	AAGTAGATAGTTCAAAAACA+TGG	-	chr2_4:57223390-57223409	Msa0337260:intron	25.0%
!!!	ACACTGATATTTTTTTCTAG+GGG	-	chr2_4:57224072-57224091	Msa0337260:intron	25.0%
!!	ATCAAAGGTAAATTGGATTT+TGG	-	chr2_4:57224228-57224247	Msa0337260:intron	25.0%
!!	TCAAAGGTAAATTGGATTTT+GGG	-	chr2_4:57224229-57224248	Msa0337260:intron	25.0%
!	GAAATATTTCAATTTCTTGC+AGG	-	chr2_4:57224402-57224421	Msa0337260:CDS	25.0%
!	AAAATGTTCACCTGATTTAA+AGG	-	chr2_4:57224496-57224515	Msa0337260:five_prime_UTR	25.0%
	AAAAGGAATTACCTAATCGA+TGG	-	chr2_4:57223088-57223107	Msa0337260:three_prime_UTR	30.0%
!	TTTGAAGCAATTTGCTTAAC+AGG	+	chr2_4:57223346-57223365	None:intergenic	30.0%
!!!	GTTTTAAATTGCACTGATTG+TGG	+	chr2_4:57223636-57223655	None:intergenic	30.0%
	AGGATAATATGAACAGAATG+AGG	-	chr2_4:57223794-57223813	Msa0337260:CDS	30.0%
	GGATAATATGAACAGAATGA+GGG	-	chr2_4:57223795-57223814	Msa0337260:CDS	30.0%
	AGTTGCAATCAAAGGTAAAT+TGG	-	chr2_4:57224221-57224240	Msa0337260:intron	30.0%
	TGAATGTATGATGGCAAATA+AGG	+	chr2_4:57224287-57224306	None:intergenic	30.0%
	AGATCTGTAAGGAAATAAAC+TGG	+	chr2_4:57224375-57224394	None:intergenic	30.0%
	TTTCTGTCATAAGATCTGTA+AGG	+	chr2_4:57224386-57224405	None:intergenic	30.0%
	GATTTCATTGCTTCATCAAA+AGG	+	chr2_4:57224452-57224471	None:intergenic	30.0%
	AGTCTCTAATCCTTTAAATC+AGG	+	chr2_4:57224509-57224528	None:intergenic	30.0%
!!!	AAAGCTGTTTTCTTTTTCGA+AGG	-	chr2_4:57224551-57224570	Msa0337260:five_prime_UTR	30.0%
	AAAAGGAATTACCTAATCGA+TGG	-	chr2_4:57223088-57223107	Msa0337260:three_prime_UTR	30.0%
!	TTTGAAGCAATTTGCTTAAC+AGG	+	chr2_4:57223346-57223365	None:intergenic	30.0%
!!!	GTTTTAAATTGCACTGATTG+TGG	+	chr2_4:57223636-57223655	None:intergenic	30.0%
	AGGATAATATGAACAGAATG+AGG	-	chr2_4:57223794-57223813	Msa0337260:CDS	30.0%
	GGATAATATGAACAGAATGA+GGG	-	chr2_4:57223795-57223814	Msa0337260:CDS	30.0%
	AGTTGCAATCAAAGGTAAAT+TGG	-	chr2_4:57224221-57224240	Msa0337260:intron	30.0%
	TGAATGTATGATGGCAAATA+AGG	+	chr2_4:57224287-57224306	None:intergenic	30.0%
	AGATCTGTAAGGAAATAAAC+TGG	+	chr2_4:57224375-57224394	None:intergenic	30.0%
	TTTCTGTCATAAGATCTGTA+AGG	+	chr2_4:57224386-57224405	None:intergenic	30.0%
	GATTTCATTGCTTCATCAAA+AGG	+	chr2_4:57224452-57224471	None:intergenic	30.0%
	AGTCTCTAATCCTTTAAATC+AGG	+	chr2_4:57224509-57224528	None:intergenic	30.0%
!!!	AAAGCTGTTTTCTTTTTCGA+AGG	-	chr2_4:57224551-57224570	Msa0337260:five_prime_UTR	30.0%
!	AAGCAATTTGCTTAACAGGA+AGG	+	chr2_4:57223342-57223361	None:intergenic	35.0%
!	CGTATGTTTTCATGGAGATA+AGG	-	chr2_4:57223864-57223883	Msa0337260:CDS	35.0%
!!	ATAGTGCTGACACAATTGAA+GGG	-	chr2_4:57223917-57223936	Msa0337260:CDS	35.0%
	TACATGAAGCTTGAAGTTGT+AGG	-	chr2_4:57223967-57223986	Msa0337260:intron	35.0%
!	TTCTGGTACAATGCTTTTAC+TGG	-	chr2_4:57224012-57224031	Msa0337260:intron	35.0%
!	TCTGGTACAATGCTTTTACT+GGG	-	chr2_4:57224013-57224032	Msa0337260:intron	35.0%
	ATGTGAAATGCCTTATAACC+CGG	-	chr2_4:57224175-57224194	Msa0337260:intron	35.0%
	ATTAACCTATCCGGGTTATA+AGG	+	chr2_4:57224188-57224207	None:intergenic	35.0%
	TTATAACCCGGATAGGTTAA+TGG	-	chr2_4:57224187-57224206	Msa0337260:intron	35.0%
	TCTAAGAAGTAATGCTGTGT+TGG	-	chr2_4:57224340-57224359	Msa0337260:intron	35.0%
!	AAGCAATTTGCTTAACAGGA+AGG	+	chr2_4:57223342-57223361	None:intergenic	35.0%
!	CGTATGTTTTCATGGAGATA+AGG	-	chr2_4:57223864-57223883	Msa0337260:CDS	35.0%
!!	ATAGTGCTGACACAATTGAA+GGG	-	chr2_4:57223917-57223936	Msa0337260:CDS	35.0%
	TACATGAAGCTTGAAGTTGT+AGG	-	chr2_4:57223967-57223986	Msa0337260:intron	35.0%
!	TTCTGGTACAATGCTTTTAC+TGG	-	chr2_4:57224012-57224031	Msa0337260:intron	35.0%
!	TCTGGTACAATGCTTTTACT+GGG	-	chr2_4:57224013-57224032	Msa0337260:intron	35.0%
	ATGTGAAATGCCTTATAACC+CGG	-	chr2_4:57224175-57224194	Msa0337260:intron	35.0%
	ATTAACCTATCCGGGTTATA+AGG	+	chr2_4:57224188-57224207	None:intergenic	35.0%
	TTATAACCCGGATAGGTTAA+TGG	-	chr2_4:57224187-57224206	Msa0337260:intron	35.0%
	TCTAAGAAGTAATGCTGTGT+TGG	-	chr2_4:57224340-57224359	Msa0337260:intron	35.0%
!	TAAAATCGACGCCATCGATT+AGG	+	chr2_4:57223102-57223121	None:intergenic	40.0%
!!	CGCATTCTGTTTCTGAGAAA+GGG	+	chr2_4:57223200-57223219	None:intergenic	40.0%
	TTATGTTCTGTAGGTTGCTG+CGG	+	chr2_4:57223223-57223242	None:intergenic	40.0%
	CAGCAACCTACAGAACATAA+TGG	-	chr2_4:57223223-57223242	Msa0337260:CDS	40.0%
	TTGTCGCCATTATGTTCTGT+AGG	+	chr2_4:57223232-57223251	None:intergenic	40.0%
	AGAACATAATGGCGACAACA+AGG	-	chr2_4:57223234-57223253	Msa0337260:CDS	40.0%
	AGGAACAAATACACAATCGG+AGG	-	chr2_4:57223266-57223285	Msa0337260:intron	40.0%
	ATTACCTCTAACGACCATGT+TGG	+	chr2_4:57223294-57223313	None:intergenic	40.0%
!!	TAAGGAGAGAAGGGTTTTGA+GGG	+	chr2_4:57223317-57223336	None:intergenic	40.0%
!	TTGCTTAACAGGAAGGTGTA+AGG	+	chr2_4:57223335-57223354	None:intergenic	40.0%
!	GCTTCAAATCGTTCCTTTTG+CGG	-	chr2_4:57223358-57223377	Msa0337260:intron	40.0%
	ATTGCAGTGCAATGTTGAAG+AGG	+	chr2_4:57223470-57223489	None:intergenic	40.0%
	TGGTGTGGTTACGAATAATG+TGG	+	chr2_4:57223523-57223542	None:intergenic	40.0%
!	TCCACAGTTGTTAGGGTTTT+GGG	+	chr2_4:57223551-57223570	None:intergenic	40.0%
!	AGTTTGCTCCACAGTTGTTA+GGG	+	chr2_4:57223558-57223577	None:intergenic	40.0%
	CTATGTAAACGACGCTGATA+TGG	+	chr2_4:57223670-57223689	None:intergenic	40.0%
	GAATGAGGGTCTATGTAAGA+AGG	-	chr2_4:57223809-57223828	Msa0337260:CDS	40.0%
!!	AAGAAGGTATTATCGACCTG+AGG	-	chr2_4:57223825-57223844	Msa0337260:CDS	40.0%
	AAAACATACGCGTCCTTCAA+TGG	+	chr2_4:57223854-57223873	None:intergenic	40.0%
!!	CATAGTGCTGACACAATTGA+AGG	-	chr2_4:57223916-57223935	Msa0337260:CDS	40.0%
	GTGCTAACGATTACTTTAGC+AGG	-	chr2_4:57223989-57224008	Msa0337260:intron	40.0%
	ACGATTACTTTAGCAGGTTC+TGG	-	chr2_4:57223995-57224014	Msa0337260:intron	40.0%
!	CTGGTACAATGCTTTTACTG+GGG	-	chr2_4:57224014-57224033	Msa0337260:intron	40.0%
	AAATGCCTTATAACCCGGAT+AGG	-	chr2_4:57224180-57224199	Msa0337260:intron	40.0%
	TGTGTGGAAGTTGCAATCAA+AGG	-	chr2_4:57224213-57224232	Msa0337260:intron	40.0%
!	TAAAATCGACGCCATCGATT+AGG	+	chr2_4:57223102-57223121	None:intergenic	40.0%
!!	CGCATTCTGTTTCTGAGAAA+GGG	+	chr2_4:57223200-57223219	None:intergenic	40.0%
	TTATGTTCTGTAGGTTGCTG+CGG	+	chr2_4:57223223-57223242	None:intergenic	40.0%
	CAGCAACCTACAGAACATAA+TGG	-	chr2_4:57223223-57223242	Msa0337260:CDS	40.0%
	TTGTCGCCATTATGTTCTGT+AGG	+	chr2_4:57223232-57223251	None:intergenic	40.0%
	AGAACATAATGGCGACAACA+AGG	-	chr2_4:57223234-57223253	Msa0337260:CDS	40.0%
	AGGAACAAATACACAATCGG+AGG	-	chr2_4:57223266-57223285	Msa0337260:intron	40.0%
	ATTACCTCTAACGACCATGT+TGG	+	chr2_4:57223294-57223313	None:intergenic	40.0%
!!	TAAGGAGAGAAGGGTTTTGA+GGG	+	chr2_4:57223317-57223336	None:intergenic	40.0%
!	TTGCTTAACAGGAAGGTGTA+AGG	+	chr2_4:57223335-57223354	None:intergenic	40.0%
!	GCTTCAAATCGTTCCTTTTG+CGG	-	chr2_4:57223358-57223377	Msa0337260:intron	40.0%
	ATTGCAGTGCAATGTTGAAG+AGG	+	chr2_4:57223470-57223489	None:intergenic	40.0%
	TGGTGTGGTTACGAATAATG+TGG	+	chr2_4:57223523-57223542	None:intergenic	40.0%
!	TCCACAGTTGTTAGGGTTTT+GGG	+	chr2_4:57223551-57223570	None:intergenic	40.0%
!	AGTTTGCTCCACAGTTGTTA+GGG	+	chr2_4:57223558-57223577	None:intergenic	40.0%
	CTATGTAAACGACGCTGATA+TGG	+	chr2_4:57223670-57223689	None:intergenic	40.0%
	GAATGAGGGTCTATGTAAGA+AGG	-	chr2_4:57223809-57223828	Msa0337260:CDS	40.0%
!!	AAGAAGGTATTATCGACCTG+AGG	-	chr2_4:57223825-57223844	Msa0337260:CDS	40.0%
	AAAACATACGCGTCCTTCAA+TGG	+	chr2_4:57223854-57223873	None:intergenic	40.0%
!!	CATAGTGCTGACACAATTGA+AGG	-	chr2_4:57223916-57223935	Msa0337260:CDS	40.0%
	GTGCTAACGATTACTTTAGC+AGG	-	chr2_4:57223989-57224008	Msa0337260:intron	40.0%
	ACGATTACTTTAGCAGGTTC+TGG	-	chr2_4:57223995-57224014	Msa0337260:intron	40.0%
!	CTGGTACAATGCTTTTACTG+GGG	-	chr2_4:57224014-57224033	Msa0337260:intron	40.0%
	AAATGCCTTATAACCCGGAT+AGG	-	chr2_4:57224180-57224199	Msa0337260:intron	40.0%
	TGTGTGGAAGTTGCAATCAA+AGG	-	chr2_4:57224213-57224232	Msa0337260:intron	40.0%
!!	GCGCATTCTGTTTCTGAGAA+AGG	+	chr2_4:57223201-57223220	None:intergenic	45.0%
	ATAATGGCGACAACAAGGCA+AGG	-	chr2_4:57223239-57223258	Msa0337260:intron	45.0%
	TAATGGCGACAACAAGGCAA+GGG	-	chr2_4:57223240-57223259	Msa0337260:intron	45.0%
!	GTAAGGAGAGAAGGGTTTTG+AGG	+	chr2_4:57223318-57223337	None:intergenic	45.0%
!	AGGAAGGTGTAAGGAGAGAA+GGG	+	chr2_4:57223326-57223345	None:intergenic	45.0%
	ACTTCACTCGATTCCGCAAA+AGG	+	chr2_4:57223374-57223393	None:intergenic	45.0%
	CTGCCATAACAGCGATATTG+CGG	+	chr2_4:57223447-57223466	None:intergenic	45.0%
!!!	TGTTAGGGTTTTGGGGTAGT+TGG	+	chr2_4:57223543-57223562	None:intergenic	45.0%
!	CCACAGTTGTTAGGGTTTTG+GGG	+	chr2_4:57223550-57223569	None:intergenic	45.0%
!	CTCCACAGTTGTTAGGGTTT+TGG	+	chr2_4:57223552-57223571	None:intergenic	45.0%
!	CAGTTTGCTCCACAGTTGTT+AGG	+	chr2_4:57223559-57223578	None:intergenic	45.0%
	GACACACATTGCGGTTATTG+TGG	+	chr2_4:57223606-57223625	None:intergenic	45.0%
!	TGTGTTTTGCTACGCCATAC+TGG	-	chr2_4:57223730-57223749	Msa0337260:CDS	45.0%
!!	TTGGTTTGTTCCTGCCAGTA+TGG	+	chr2_4:57223747-57223766	None:intergenic	45.0%
!!	TTTTCCACACGGGCTATGAT+TGG	+	chr2_4:57223766-57223785	None:intergenic	45.0%
!	CTGCTCAATCTTTTCCACAC+GGG	+	chr2_4:57223776-57223795	None:intergenic	45.0%
!	CCTGCTCAATCTTTTCCACA+CGG	+	chr2_4:57223777-57223796	None:intergenic	45.0%
!	GAAGGACGCGTATGTTTTCA+TGG	-	chr2_4:57223856-57223875	Msa0337260:CDS	45.0%
	ACTTACACTTCAACGCGTTC+AGG	+	chr2_4:57224048-57224067	None:intergenic	45.0%
	ACAGCACCATTAACCTATCC+GGG	+	chr2_4:57224196-57224215	None:intergenic	45.0%
	CACAGCACCATTAACCTATC+CGG	+	chr2_4:57224197-57224216	None:intergenic	45.0%
!!	GATAGGTTAATGGTGCTGTG+TGG	-	chr2_4:57224197-57224216	Msa0337260:intron	45.0%
	AGGTACCATCCTAAATGCGT+GGG	-	chr2_4:57224422-57224441	Msa0337260:CDS	45.0%
	ACCACAACTAGCTGCTCAAA+GGG	+	chr2_4:57224589-57224608	None:intergenic	45.0%
	AACCACAACTAGCTGCTCAA+AGG	+	chr2_4:57224590-57224609	None:intergenic	45.0%
	TTTGAGCAGCTAGTTGTGGT+TGG	-	chr2_4:57224589-57224608	Msa0337260:five_prime_UTR	45.0%
!	CAATGAGCTAGTCTGCATAC+TGG	-	chr2_4:57224612-57224631	Msa0337260:five_prime_UTR	45.0%
	AGTCTGCATACTGGATACCA+TGG	-	chr2_4:57224621-57224640	Msa0337260:five_prime_UTR	45.0%
!!	GCGCATTCTGTTTCTGAGAA+AGG	+	chr2_4:57223201-57223220	None:intergenic	45.0%
	ATAATGGCGACAACAAGGCA+AGG	-	chr2_4:57223239-57223258	Msa0337260:intron	45.0%
	TAATGGCGACAACAAGGCAA+GGG	-	chr2_4:57223240-57223259	Msa0337260:intron	45.0%
!	GTAAGGAGAGAAGGGTTTTG+AGG	+	chr2_4:57223318-57223337	None:intergenic	45.0%
!	AGGAAGGTGTAAGGAGAGAA+GGG	+	chr2_4:57223326-57223345	None:intergenic	45.0%
	ACTTCACTCGATTCCGCAAA+AGG	+	chr2_4:57223374-57223393	None:intergenic	45.0%
	CTGCCATAACAGCGATATTG+CGG	+	chr2_4:57223447-57223466	None:intergenic	45.0%
!!!	TGTTAGGGTTTTGGGGTAGT+TGG	+	chr2_4:57223543-57223562	None:intergenic	45.0%
!	CCACAGTTGTTAGGGTTTTG+GGG	+	chr2_4:57223550-57223569	None:intergenic	45.0%
!	CTCCACAGTTGTTAGGGTTT+TGG	+	chr2_4:57223552-57223571	None:intergenic	45.0%
!	CAGTTTGCTCCACAGTTGTT+AGG	+	chr2_4:57223559-57223578	None:intergenic	45.0%
	GACACACATTGCGGTTATTG+TGG	+	chr2_4:57223606-57223625	None:intergenic	45.0%
!	TGTGTTTTGCTACGCCATAC+TGG	-	chr2_4:57223730-57223749	Msa0337260:CDS	45.0%
!!	TTGGTTTGTTCCTGCCAGTA+TGG	+	chr2_4:57223747-57223766	None:intergenic	45.0%
!!	TTTTCCACACGGGCTATGAT+TGG	+	chr2_4:57223766-57223785	None:intergenic	45.0%
!	CTGCTCAATCTTTTCCACAC+GGG	+	chr2_4:57223776-57223795	None:intergenic	45.0%
!	CCTGCTCAATCTTTTCCACA+CGG	+	chr2_4:57223777-57223796	None:intergenic	45.0%
!	GAAGGACGCGTATGTTTTCA+TGG	-	chr2_4:57223856-57223875	Msa0337260:CDS	45.0%
	ACTTACACTTCAACGCGTTC+AGG	+	chr2_4:57224048-57224067	None:intergenic	45.0%
	ACAGCACCATTAACCTATCC+GGG	+	chr2_4:57224196-57224215	None:intergenic	45.0%
	CACAGCACCATTAACCTATC+CGG	+	chr2_4:57224197-57224216	None:intergenic	45.0%
!!	GATAGGTTAATGGTGCTGTG+TGG	-	chr2_4:57224197-57224216	Msa0337260:intron	45.0%
	AGGTACCATCCTAAATGCGT+GGG	-	chr2_4:57224422-57224441	Msa0337260:CDS	45.0%
	ACCACAACTAGCTGCTCAAA+GGG	+	chr2_4:57224589-57224608	None:intergenic	45.0%
	AACCACAACTAGCTGCTCAA+AGG	+	chr2_4:57224590-57224609	None:intergenic	45.0%
	TTTGAGCAGCTAGTTGTGGT+TGG	-	chr2_4:57224589-57224608	Msa0337260:five_prime_UTR	45.0%
!	CAATGAGCTAGTCTGCATAC+TGG	-	chr2_4:57224612-57224631	Msa0337260:five_prime_UTR	45.0%
	AGTCTGCATACTGGATACCA+TGG	-	chr2_4:57224621-57224640	Msa0337260:five_prime_UTR	45.0%
	CGACAACAAGGCAAGGGAAA+AGG	-	chr2_4:57223246-57223265	Msa0337260:intron	50.0%
!	CAGGAAGGTGTAAGGAGAGA+AGG	+	chr2_4:57223327-57223346	None:intergenic	50.0%
	CGATATTGCGGCTGCAATTG+CGG	+	chr2_4:57223435-57223454	None:intergenic	50.0%
	CAGCCGCAATATCGCTGTTA+TGG	-	chr2_4:57223441-57223460	Msa0337260:intron	50.0%
	CCCCAAAACCCTAACAACTG+TGG	-	chr2_4:57223547-57223566	Msa0337260:intron	50.0%
!	TTTTGCTACGCCATACTGGC+AGG	-	chr2_4:57223734-57223753	Msa0337260:CDS	50.0%
	CAAACCAATCATAGCCCGTG+TGG	-	chr2_4:57223759-57223778	Msa0337260:CDS	50.0%
	CCGTGTGGAAAAGATTGAGC+AGG	-	chr2_4:57223774-57223793	Msa0337260:CDS	50.0%
	CGACCTGAGGAAACCATTGA+AGG	-	chr2_4:57223838-57223857	Msa0337260:CDS	50.0%
	CGTCCTTCAATGGTTTCCTC+AGG	+	chr2_4:57223844-57223863	None:intergenic	50.0%
	CAGGTACCATCCTAAATGCG+TGG	-	chr2_4:57224421-57224440	Msa0337260:CDS	50.0%
!	AAAGGCATGCCCACGCATTT+AGG	+	chr2_4:57224434-57224453	None:intergenic	50.0%
	ACCCTTTGAGCAGCTAGTTG+TGG	-	chr2_4:57224585-57224604	Msa0337260:five_prime_UTR	50.0%
	CGACAACAAGGCAAGGGAAA+AGG	-	chr2_4:57223246-57223265	Msa0337260:intron	50.0%
!	CAGGAAGGTGTAAGGAGAGA+AGG	+	chr2_4:57223327-57223346	None:intergenic	50.0%
	CGATATTGCGGCTGCAATTG+CGG	+	chr2_4:57223435-57223454	None:intergenic	50.0%
	CAGCCGCAATATCGCTGTTA+TGG	-	chr2_4:57223441-57223460	Msa0337260:intron	50.0%
	CCCCAAAACCCTAACAACTG+TGG	-	chr2_4:57223547-57223566	Msa0337260:intron	50.0%
!	TTTTGCTACGCCATACTGGC+AGG	-	chr2_4:57223734-57223753	Msa0337260:CDS	50.0%
	CAAACCAATCATAGCCCGTG+TGG	-	chr2_4:57223759-57223778	Msa0337260:CDS	50.0%
	CCGTGTGGAAAAGATTGAGC+AGG	-	chr2_4:57223774-57223793	Msa0337260:CDS	50.0%
	CGACCTGAGGAAACCATTGA+AGG	-	chr2_4:57223838-57223857	Msa0337260:CDS	50.0%
	CGTCCTTCAATGGTTTCCTC+AGG	+	chr2_4:57223844-57223863	None:intergenic	50.0%
	CAGGTACCATCCTAAATGCG+TGG	-	chr2_4:57224421-57224440	Msa0337260:CDS	50.0%
!	AAAGGCATGCCCACGCATTT+AGG	+	chr2_4:57224434-57224453	None:intergenic	50.0%
	ACCCTTTGAGCAGCTAGTTG+TGG	-	chr2_4:57224585-57224604	Msa0337260:five_prime_UTR	50.0%
!!	CACAATCGGAGGCACCAACA+TGG	-	chr2_4:57223277-57223296	Msa0337260:intron	55.0%
	GGCACCAACATGGTCGTTAG+AGG	-	chr2_4:57223287-57223306	Msa0337260:intron	55.0%
!!!	GGGTTTTGGGGTAGTTGGTG+TGG	+	chr2_4:57223538-57223557	None:intergenic	55.0%
	GGATGCTGCGACACACATTG+CGG	+	chr2_4:57223615-57223634	None:intergenic	55.0%
	GCATGCCCACGCATTTAGGA+TGG	+	chr2_4:57224430-57224449	None:intergenic	55.0%
!!	CACAATCGGAGGCACCAACA+TGG	-	chr2_4:57223277-57223296	Msa0337260:intron	55.0%
	GGCACCAACATGGTCGTTAG+AGG	-	chr2_4:57223287-57223306	Msa0337260:intron	55.0%
!!!	GGGTTTTGGGGTAGTTGGTG+TGG	+	chr2_4:57223538-57223557	None:intergenic	55.0%
	GGATGCTGCGACACACATTG+CGG	+	chr2_4:57223615-57223634	None:intergenic	55.0%
	GCATGCCCACGCATTTAGGA+TGG	+	chr2_4:57224430-57224449	None:intergenic	55.0%
	TGCGGCTGCAATTGCGGTTG+CGG	+	chr2_4:57223429-57223448	None:intergenic	60.0%
	TGCGGCTGCAATTGCGGTTG+CGG	+	chr2_4:57223429-57223448	None:intergenic	60.0%
	GCGGCTGCAATTGCGGTTGC+GGG	+	chr2_4:57223428-57223447	None:intergenic	65.0%
	GCGGCTGCAATTGCGGTTGC+GGG	+	chr2_4:57223428-57223447	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	57223028	57224651	57223028	ID=Msa0337260;Name=Msa0337260
chr2_4	mRNA	57223028	57224651	57223028	ID=Msa0337260-mRNA-1;Parent=Msa0337260;Name=Msa0337260-mRNA-1;_AED=0.42;_eAED=0.42;_QI=187\|1\|1\|1\|1\|1\|4\|128\|200
chr2_4	exon	57223028	57223255	57223028	ID=Msa0337260-mRNA-1:exon:17441;Parent=Msa0337260-mRNA-1
chr2_4	exon	57223445	57223513	57223445	ID=Msa0337260-mRNA-1:exon:17440;Parent=Msa0337260-mRNA-1
chr2_4	exon	57223618	57223957	57223618	ID=Msa0337260-mRNA-1:exon:17439;Parent=Msa0337260-mRNA-1
chr2_4	exon	57224371	57224651	57224371	ID=Msa0337260-mRNA-1:exon:17438;Parent=Msa0337260-mRNA-1
chr2_4	five_prime_UTR	57224465	57224651	57224465	ID=Msa0337260-mRNA-1:five_prime_utr;Parent=Msa0337260-mRNA-1
chr2_4	CDS	57224371	57224464	57224371	ID=Msa0337260-mRNA-1:cds;Parent=Msa0337260-mRNA-1
chr2_4	CDS	57223618	57223957	57223618	ID=Msa0337260-mRNA-1:cds;Parent=Msa0337260-mRNA-1
chr2_4	CDS	57223445	57223513	57223445	ID=Msa0337260-mRNA-1:cds;Parent=Msa0337260-mRNA-1
chr2_4	CDS	57223156	57223255	57223156	ID=Msa0337260-mRNA-1:cds;Parent=Msa0337260-mRNA-1
chr2_4	three_prime_UTR	57223028	57223155	57223028	ID=Msa0337260-mRNA-1:three_prime_utr;Parent=Msa0337260-mRNA-1

Gene Sequence

>Msa0337260

ATGCGCCGCAGCAACCTACAGAACATAATGGCGACAACAAGGCAAGGGAAAAGGAACAAATACACAATCGGAGGCACCAACATGGTCGTTAGAGCTAAAGACTGTGTTTTGCTACGCCATACTGGCAGGAACAAACCAATCATAGCCCGTGTGGAAAAGATTGAGCAGGATAATATGAACAGAATGAGGGTCTATGTAAGAAGGTATTATCGACCTGAGGAAACCATTGAAGGACGCGTATGTTTTCATGGAGATAAGGAGCTGTTTTTGTCTAATCATTATGATGTTCATAGTGCTGACACAATTGAAGGGAAGTGTTTTGTGCACACTTTGAAGAACTACATGAAGCTTGAAGTTGTAGGTGCTAACGATTACTTTAGCAGGTTCTGGTACAATGCTTTTACTGGGGCTATGACACCTGAACGCGTTGAAGTGTTGTGCAAATGTGAAATGCCTTATAACCCGGATAGGTTAATGGTGCTGTGTGGAAGTTGCAATCAAAGGTACCATCCTAAATGCGTGGGCATGCCTTTTGATGAAGCAATGAAATCAGAAGATTTTAGATTTGTTTGTTCAAAATGTTCACCTGATTTAAAGGATTAG

Protein sequence

>Msa0337260

MRRSNLQNIMATTRQGKRNKYTIGGTNMVVRAKDCVLLRHTGRNKPIIARVEKIEQDNMNRMRVYVRRYYRPEETIEGRVCFHGDKELFLSNHYDVHSADTIEGKCFVHTLKNYMKLEVVGANDYFSRFWYNAFTGAMTPERVEVLCKCEMPYNPDRLMVLCGSCNQRYHPKCVGMPFDEAMKSEDFRFVCSKCSPDLKD*