Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337390 | XP_039687055.1 | 88.182 | 220 | 22 | 2 | 1 | 217 | 1 | 219 | 1.43e-135 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337390 | sp|F4JIJ7|BH162_ARATH | 37.989 | 179 | 97 | 5 | 13 | 180 | 11 | 186 | 6.42e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0337390 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337390 | MtrunA17_Chr2g0324511 | 84.663 | 163 | 22 | 1 | 1 | 160 | 1 | 163 | 3.74e-95 | 275 |
| Msa0337390 | MtrunA17_Chr4g0040201 | 64.179 | 201 | 57 | 5 | 9 | 201 | 8 | 201 | 4.97e-84 | 248 |
| Msa0337390 | MtrunA17_Chr2g0324571 | 84.746 | 118 | 14 | 2 | 46 | 160 | 2 | 118 | 2.13e-65 | 198 |
| Msa0337390 | MtrunA17_Chr2g0324521 | 81.739 | 115 | 21 | 0 | 46 | 160 | 2 | 116 | 3.76e-64 | 195 |
| Msa0337390 | MtrunA17_Chr2g0282341 | 36.296 | 135 | 80 | 2 | 49 | 181 | 4 | 134 | 1.10e-26 | 99.8 |
| Msa0337390 | MtrunA17_Chr2g0324531 | 76.271 | 59 | 14 | 0 | 159 | 217 | 2 | 60 | 1.68e-26 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337390 | AT4G20970.1 | 37.989 | 179 | 97 | 5 | 13 | 180 | 11 | 186 | 6.52e-30 | 110 |
| Msa0337390 | AT1G10585.1 | 29.050 | 179 | 117 | 4 | 7 | 184 | 8 | 177 | 1.35e-14 | 69.7 |
| Msa0337390 | AT1G10586.1 | 25.824 | 182 | 124 | 5 | 1 | 180 | 1 | 173 | 4.26e-11 | 60.1 |
Find 48 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTGGGATCTTGAAAT+TGG | 0.192948 | 2_4:+57402436 | Msa0337390:CDS |
| TTTCAACCTCTCGCCTATTT+TGG | 0.214946 | 2_4:-57402371 | None:intergenic |
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2_4:+57400710 | Msa0337390:CDS |
| TGGAAACACAACCTCAATTC+TGG | 0.252791 | 2_4:+57402422 | Msa0337390:CDS |
| GGTGGCTGCTCGAGTTCTTC+TGG | 0.260572 | 2_4:+57400555 | Msa0337390:CDS |
| AGAGAAGAAAGAAAGTTTAA+TGG | 0.275748 | 2_4:+57400512 | Msa0337390:CDS |
| CCGCAATCTTTGTTACGATT+TGG | 0.283657 | 2_4:+57402343 | Msa0337390:CDS |
| TCTATTCTTCATCAAGGATT+AGG | 0.288350 | 2_4:-57402505 | None:intergenic |
| ATCACCTTTGGATCATAGTT+AGG | 0.324173 | 2_4:-57399989 | None:intergenic |
| GAAGAATAGATTAAAGTATC+TGG | 0.341952 | 2_4:+57402518 | Msa0337390:three_prime_UTR |
| GAGAGTTGAGTTTAGAAAAG+AGG | 0.353043 | 2_4:-57399961 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.355968 | 2_4:+57400513 | Msa0337390:CDS |
| CGATTTGGAGAAACCAAAAT+AGG | 0.365801 | 2_4:+57402358 | Msa0337390:CDS |
| TAGAAAAGAGGATCTTCATT+TGG | 0.386590 | 2_4:-57399949 | None:intergenic |
| ATTGCCTCATCTACTTGATC+AGG | 0.400525 | 2_4:-57400447 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2_4:+57400714 | Msa0337390:CDS |
| TTGAAATTGGAAGTGAGAGT+TGG | 0.404544 | 2_4:+57402449 | Msa0337390:CDS |
| TAACTTCACAGAAAATAAAA+TGG | 0.408004 | 2_4:-57400656 | None:intergenic |
| AACGATCTTTCTTTCTACTT+TGG | 0.409199 | 2_4:-57399909 | None:intergenic |
| CAAACATTATATTTGTCTCT+AGG | 0.410779 | 2_4:-57400485 | None:intergenic |
| CGAGAGGTTGAAAGCATTTG+TGG | 0.420058 | 2_4:+57402381 | Msa0337390:CDS |
| CTTTAATCTATTCTTCATCA+AGG | 0.435959 | 2_4:-57402511 | None:intergenic |
| AAAATAGAGATTCATGAAAT+GGG | 0.456591 | 2_4:+57400594 | Msa0337390:CDS |
| TCTACTTTGGTTGAAGAAGA+AGG | 0.464564 | 2_4:-57399896 | None:intergenic |
| TGAAATTGGAAGTGAGAGTT+GGG | 0.469657 | 2_4:+57402450 | Msa0337390:CDS |
| TCACCTTTGGATCATAGTTA+GGG | 0.469862 | 2_4:-57399988 | None:intergenic |
| ATTTCAAGATCCCAGAATTG+AGG | 0.481933 | 2_4:-57402433 | None:intergenic |
| TCAAGGATTAGGTAAACTCT+TGG | 0.489378 | 2_4:-57402494 | None:intergenic |
| GGAAACACAACCTCAATTCT+GGG | 0.497186 | 2_4:+57402423 | Msa0337390:CDS |
| TCATCTACTTGATCAGGTAA+TGG | 0.516045 | 2_4:-57400441 | None:intergenic |
| TCTTCATACCGTACATGCTC+AGG | 0.517547 | 2_4:+57400746 | Msa0337390:CDS |
| TATATATACCTGAGCATGTA+CGG | 0.538419 | 2_4:-57400754 | None:intergenic |
| TACAAGTCATTGTAACATGT+GGG | 0.544345 | 2_4:+57400625 | Msa0337390:CDS |
| TTGTGTTTCCACATCGCTCA+CGG | 0.549953 | 2_4:-57402410 | None:intergenic |
| CTACAAGTCATTGTAACATG+TGG | 0.589705 | 2_4:+57400624 | Msa0337390:CDS |
| TCTCCCTAACTATGATCCAA+AGG | 0.591025 | 2_4:+57399985 | Msa0337390:CDS |
| AGGTTGAAAGCATTTGTGGA+AGG | 0.602245 | 2_4:+57402385 | Msa0337390:CDS |
| CCAAATCGTAACAAAGATTG+CGG | 0.605051 | 2_4:-57402343 | None:intergenic |
| AATAAGAGATCACGTGATGG+TGG | 0.625950 | 2_4:+57400537 | Msa0337390:CDS |
| TGTTACAATGACTTGTAGAG+TGG | 0.628096 | 2_4:-57400619 | None:intergenic |
| ATTACCTGATCAAGTAGATG+AGG | 0.635272 | 2_4:+57400443 | Msa0337390:CDS |
| GAGAAACCAAAATAGGCGAG+AGG | 0.652629 | 2_4:+57402365 | Msa0337390:CDS |
| GGAAATAAGAGATCACGTGA+TGG | 0.672227 | 2_4:+57400534 | Msa0337390:CDS |
| ACAAGTCATTGTAACATGTG+GGG | 0.680252 | 2_4:+57400626 | Msa0337390:CDS |
| GGAAGGATCCGTGAGCGATG+TGG | 0.680798 | 2_4:+57402402 | Msa0337390:CDS |
| TAAATGGATCAAAATCAACA+AGG | 0.698469 | 2_4:+57399866 | None:intergenic |
| ATGGATCAAAATCAACAAGG+AGG | 0.707629 | 2_4:+57399869 | Msa0337390:CDS |
| ACCGCATGAAGAAAACGTCG+AGG | 0.719537 | 2_4:+57400686 | Msa0337390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATTTTATAAGCTA+AGG | + | chr2_4:57400016-57400035 | Msa0337390:intron | 10.0% |
| !!! | TATTTTATTTTATAAGCTAA+GGG | + | chr2_4:57400017-57400036 | Msa0337390:intron | 10.0% |
| !!! | TTATTGCAATAAATTTTATA+CGG | - | chr2_4:57401300-57401319 | None:intergenic | 10.0% |
| !! | TAAAATAAAAAAATCACCTT+TGG | - | chr2_4:57400004-57400023 | None:intergenic | 15.0% |
| !! | TGTTAATTAATTAAAAGAAG+AGG | - | chr2_4:57400335-57400354 | None:intergenic | 15.0% |
| !! | TTGAATAACACATATTAATT+TGG | + | chr2_4:57400384-57400403 | Msa0337390:intron | 15.0% |
| !!! | TTATCAATTGTTTCTATTTT+AGG | + | chr2_4:57401037-57401056 | Msa0337390:intron | 15.0% |
| !!! | TATCAATTGTTTCTATTTTA+GGG | + | chr2_4:57401038-57401057 | Msa0337390:intron | 15.0% |
| !!! | TTGTTATTGCAATAAATTTT+AGG | - | chr2_4:57401243-57401262 | None:intergenic | 15.0% |
| !! | TTCTTGTCAAAAAAAAAAAA+AGG | + | chr2_4:57401729-57401748 | Msa0337390:intron | 15.0% |
| !! | AAATCCAAAAACTTAAAAAA+TGG | + | chr2_4:57402031-57402050 | Msa0337390:intron | 15.0% |
| !!! | ATTTCCATTTTTTAAGTTTT+TGG | - | chr2_4:57402038-57402057 | None:intergenic | 15.0% |
| !!! | TTTTGTAAACACCTTTTATT+TGG | - | chr2_4:57400220-57400239 | None:intergenic | 20.0% |
| !!! | TGTTATTTTTCATTTAATGC+AGG | + | chr2_4:57400407-57400426 | Msa0337390:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | - | chr2_4:57400594-57400613 | None:intergenic | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | + | chr2_4:57400593-57400612 | Msa0337390:CDS | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | + | chr2_4:57400594-57400613 | Msa0337390:CDS | 20.0% |
| !! | TAACTTCACAGAAAATAAAA+TGG | - | chr2_4:57400659-57400678 | None:intergenic | 20.0% |
| !! | TATATATATACATACACACA+TGG | + | chr2_4:57400769-57400788 | Msa0337390:intron | 20.0% |
| !!! | TTATTGCAATAAATTTTAGG+AGG | - | chr2_4:57401240-57401259 | None:intergenic | 20.0% |
| !! | TATTTCTTAACTTATGTCTA+AGG | + | chr2_4:57401792-57401811 | Msa0337390:intron | 20.0% |
| !! | AATGACATGTCATAAAAAAT+GGG | - | chr2_4:57401834-57401853 | None:intergenic | 20.0% |
| !! | AAATGACATGTCATAAAAAA+TGG | - | chr2_4:57401835-57401854 | None:intergenic | 20.0% |
| !! | AGAAAAAAAATGTTAGATCA+TGG | - | chr2_4:57401915-57401934 | None:intergenic | 20.0% |
| ! | GAATATACATATGAATGTGA+TGG | - | chr2_4:57400058-57400077 | None:intergenic | 25.0% |
| ! | TTCATATGTATATTCATGTG+AGG | + | chr2_4:57400063-57400082 | Msa0337390:intron | 25.0% |
| !!! | AGGTCGATTTTTTTTTTTAC+AGG | - | chr2_4:57400114-57400133 | None:intergenic | 25.0% |
| ! | CAATTGTCACATATGTTTAA+CGG | + | chr2_4:57400191-57400210 | Msa0337390:intron | 25.0% |
| ! | TTTAACGGTTTCCAAATAAA+AGG | + | chr2_4:57400206-57400225 | Msa0337390:intron | 25.0% |
| ! | ACACTCTAATAAGTGTAAAA+TGG | - | chr2_4:57400270-57400289 | None:intergenic | 25.0% |
| ! | GAGTACCTATATATTCATAT+AGG | + | chr2_4:57400305-57400324 | Msa0337390:intron | 25.0% |
| ! | GTGAACCTATATGAATATAT+AGG | - | chr2_4:57400313-57400332 | None:intergenic | 25.0% |
| ! | CAAACATTATATTTGTCTCT+AGG | - | chr2_4:57400488-57400507 | None:intergenic | 25.0% |
| ! | AGAGAAGAAAGAAAGTTTAA+TGG | + | chr2_4:57400512-57400531 | Msa0337390:CDS | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | + | chr2_4:57400513-57400532 | Msa0337390:CDS | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | + | chr2_4:57400710-57400729 | Msa0337390:CDS | 25.0% |
| ! | TACATATCACTATTGTTCTT+TGG | + | chr2_4:57400896-57400915 | Msa0337390:intron | 25.0% |
| ! | ACATATCACTATTGTTCTTT+GGG | + | chr2_4:57400897-57400916 | Msa0337390:intron | 25.0% |
| ! | TCTAGTTACTTATATAGAGA+GGG | - | chr2_4:57401163-57401182 | None:intergenic | 25.0% |
| ! | ATCTAGTTACTTATATAGAG+AGG | - | chr2_4:57401164-57401183 | None:intergenic | 25.0% |
| !! | AATAAATTTTATACGGTAGC+AGG | - | chr2_4:57401293-57401312 | None:intergenic | 25.0% |
| ! | CGATTTAATCTCATATATGA+TGG | - | chr2_4:57401396-57401415 | None:intergenic | 25.0% |
| !!! | CAATTTTGAAAATTTAGTGC+AGG | + | chr2_4:57401517-57401536 | Msa0337390:intron | 25.0% |
| !! | GTTAGTATGTGTTTTTCTAA+AGG | - | chr2_4:57401608-57401627 | None:intergenic | 25.0% |
| ! | AAATGTTAGATCATGGTTTA+TGG | - | chr2_4:57401908-57401927 | None:intergenic | 25.0% |
| !! | GTCTTAACAATATTTTGTGA+AGG | + | chr2_4:57402240-57402259 | Msa0337390:intron | 25.0% |
| ! | CTTTAATCTATTCTTCATCA+AGG | - | chr2_4:57402514-57402533 | None:intergenic | 25.0% |
| AACGATCTTTCTTTCTACTT+TGG | - | chr2_4:57399912-57399931 | None:intergenic | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | - | chr2_4:57399952-57399971 | None:intergenic | 30.0% | |
| ATATATAGGTACTCTACTTG+TGG | - | chr2_4:57400299-57400318 | None:intergenic | 30.0% | |
| TTAACACTATAAGCTCTTCT+TGG | + | chr2_4:57400360-57400379 | Msa0337390:intron | 30.0% | |
| TACAAGTCATTGTAACATGT+GGG | + | chr2_4:57400625-57400644 | Msa0337390:CDS | 30.0% | |
| TATATATACCTGAGCATGTA+CGG | - | chr2_4:57400757-57400776 | None:intergenic | 30.0% | |
| AGCCAAAAAACTTGAATAGT+GGG | + | chr2_4:57400813-57400832 | Msa0337390:intron | 30.0% | |
| TGGCAAATCTTAAAGAACTA+GGG | - | chr2_4:57401079-57401098 | None:intergenic | 30.0% | |
| ATGGCAAATCTTAAAGAACT+AGG | - | chr2_4:57401080-57401099 | None:intergenic | 30.0% | |
| TAATTGCAGTTCCTTCAATA+CGG | + | chr2_4:57401264-57401283 | Msa0337390:intron | 30.0% | |
| TAACAAATAACCTCCATGAA+AGG | + | chr2_4:57401317-57401336 | Msa0337390:intron | 30.0% | |
| AACAAATAACCTCCATGAAA+GGG | + | chr2_4:57401318-57401337 | Msa0337390:intron | 30.0% | |
| ATGATGATAGATGCTAATGA+TGG | - | chr2_4:57401463-57401482 | None:intergenic | 30.0% | |
| TCTATTCTTCATCAAGGATT+AGG | - | chr2_4:57402508-57402527 | None:intergenic | 30.0% | |
| ATGGATCAAAATCAACAAGG+AGG | + | chr2_4:57399869-57399888 | Msa0337390:CDS | 35.0% | |
| TCTACTTTGGTTGAAGAAGA+AGG | - | chr2_4:57399899-57399918 | None:intergenic | 35.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | - | chr2_4:57399964-57399983 | None:intergenic | 35.0% | |
| TCACCTTTGGATCATAGTTA+GGG | - | chr2_4:57399991-57400010 | None:intergenic | 35.0% | |
| ATCACCTTTGGATCATAGTT+AGG | - | chr2_4:57399992-57400011 | None:intergenic | 35.0% | |
| CCAATCTCAAAGAAAACTCA+AGG | - | chr2_4:57400134-57400153 | None:intergenic | 35.0% | |
| !!! | CCTTGAGTTTTCTTTGAGAT+TGG | + | chr2_4:57400131-57400150 | Msa0337390:intron | 35.0% |
| TCATCTACTTGATCAGGTAA+TGG | - | chr2_4:57400444-57400463 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | + | chr2_4:57400443-57400462 | Msa0337390:CDS | 35.0% | |
| ! | TGTTACAATGACTTGTAGAG+TGG | - | chr2_4:57400622-57400641 | None:intergenic | 35.0% |
| CTACAAGTCATTGTAACATG+TGG | + | chr2_4:57400624-57400643 | Msa0337390:CDS | 35.0% | |
| ACAAGTCATTGTAACATGTG+GGG | + | chr2_4:57400626-57400645 | Msa0337390:CDS | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | + | chr2_4:57400714-57400733 | Msa0337390:CDS | 35.0% | |
| GAGCCAAAAAACTTGAATAG+TGG | + | chr2_4:57400812-57400831 | Msa0337390:intron | 35.0% | |
| GCCAAAAAACTTGAATAGTG+GGG | + | chr2_4:57400814-57400833 | Msa0337390:intron | 35.0% | |
| CCAAAAAACTTGAATAGTGG+GGG | + | chr2_4:57400815-57400834 | Msa0337390:intron | 35.0% | |
| TAACATCAACCGTACAATCA+GGG | - | chr2_4:57401576-57401595 | None:intergenic | 35.0% | |
| TATATTCCGAACTGAGTTCT+AGG | + | chr2_4:57401997-57402016 | Msa0337390:intron | 35.0% | |
| ATATTCCGAACTGAGTTCTA+GGG | + | chr2_4:57401998-57402017 | Msa0337390:intron | 35.0% | |
| CCAAATCGTAACAAAGATTG+CGG | - | chr2_4:57402346-57402365 | None:intergenic | 35.0% | |
| ! | CGATTTGGAGAAACCAAAAT+AGG | + | chr2_4:57402358-57402377 | Msa0337390:CDS | 35.0% |
| ATTTCAAGATCCCAGAATTG+AGG | - | chr2_4:57402436-57402455 | None:intergenic | 35.0% | |
| !! | CAATTCTGGGATCTTGAAAT+TGG | + | chr2_4:57402436-57402455 | Msa0337390:CDS | 35.0% |
| TTGAAATTGGAAGTGAGAGT+TGG | + | chr2_4:57402449-57402468 | Msa0337390:CDS | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | + | chr2_4:57402450-57402469 | Msa0337390:CDS | 35.0% | |
| TCAAGGATTAGGTAAACTCT+TGG | - | chr2_4:57402497-57402516 | None:intergenic | 35.0% | |
| TCTCCCTAACTATGATCCAA+AGG | + | chr2_4:57399985-57400004 | Msa0337390:CDS | 40.0% | |
| ATTGCCTCATCTACTTGATC+AGG | - | chr2_4:57400450-57400469 | None:intergenic | 40.0% | |
| GGAAATAAGAGATCACGTGA+TGG | + | chr2_4:57400534-57400553 | Msa0337390:CDS | 40.0% | |
| AATAAGAGATCACGTGATGG+TGG | + | chr2_4:57400537-57400556 | Msa0337390:CDS | 40.0% | |
| !!! | CCCCCACTATTCAAGTTTTT+TGG | - | chr2_4:57400818-57400837 | None:intergenic | 40.0% |
| ! | GTTCTTTGGGAAATGCTAAC+AGG | + | chr2_4:57400910-57400929 | Msa0337390:intron | 40.0% |
| GTATGTTGCAAACCCTTTCA+TGG | - | chr2_4:57401333-57401352 | None:intergenic | 40.0% | |
| AACATCAACCGTACAATCAG+GGG | - | chr2_4:57401575-57401594 | None:intergenic | 40.0% | |
| GTAACATCAACCGTACAATC+AGG | - | chr2_4:57401577-57401596 | None:intergenic | 40.0% | |
| ! | ACATACTAACTTGTGCCCTA+TGG | + | chr2_4:57401618-57401637 | Msa0337390:intron | 40.0% |
| ! | CATACTAACTTGTGCCCTAT+GGG | + | chr2_4:57401619-57401638 | Msa0337390:intron | 40.0% |
| ! | TATTCCGAACTGAGTTCTAG+GGG | + | chr2_4:57401999-57402018 | Msa0337390:intron | 40.0% |
| TGTGTGTGTGTGTGTATTCA+TGG | - | chr2_4:57402155-57402174 | None:intergenic | 40.0% | |
| CCGCAATCTTTGTTACGATT+TGG | + | chr2_4:57402343-57402362 | Msa0337390:CDS | 40.0% | |
| ! | TTTCAACCTCTCGCCTATTT+TGG | - | chr2_4:57402374-57402393 | None:intergenic | 40.0% |
| !! | AGGTTGAAAGCATTTGTGGA+AGG | + | chr2_4:57402385-57402404 | Msa0337390:CDS | 40.0% |
| TGGAAACACAACCTCAATTC+TGG | + | chr2_4:57402422-57402441 | Msa0337390:CDS | 40.0% | |
| GGAAACACAACCTCAATTCT+GGG | + | chr2_4:57402423-57402442 | Msa0337390:CDS | 40.0% | |
| ! | ACCTCGACGTTTTCTTCATG+CGG | - | chr2_4:57400690-57400709 | None:intergenic | 45.0% |
| TCTTCATACCGTACATGCTC+AGG | + | chr2_4:57400746-57400765 | Msa0337390:CDS | 45.0% | |
| GGTCTAATTGTACGCAGTAG+CGG | + | chr2_4:57400790-57400809 | Msa0337390:intron | 45.0% | |
| AAATGCTAACAGGCGCTCTT+AGG | + | chr2_4:57400920-57400939 | Msa0337390:intron | 45.0% | |
| AATGCTAACAGGCGCTCTTA+GGG | + | chr2_4:57400921-57400940 | Msa0337390:intron | 45.0% | |
| TGTTGCAAACCCTTTCATGG+AGG | - | chr2_4:57401330-57401349 | None:intergenic | 45.0% | |
| AGCCACACATAAGGTTGTGT+GGG | - | chr2_4:57401549-57401568 | None:intergenic | 45.0% | |
| !! | ATTCCGAACTGAGTTCTAGG+GGG | + | chr2_4:57402000-57402019 | Msa0337390:intron | 45.0% |
| GAGAAACCAAAATAGGCGAG+AGG | + | chr2_4:57402365-57402384 | Msa0337390:CDS | 45.0% | |
| !! | CGAGAGGTTGAAAGCATTTG+TGG | + | chr2_4:57402381-57402400 | Msa0337390:CDS | 45.0% |
| TTGTGTTTCCACATCGCTCA+CGG | - | chr2_4:57402413-57402432 | None:intergenic | 45.0% | |
| !!! | TATTTAATATTTTCAAAATA+TGG | - | chr2_4:57401099-57401118 | None:intergenic | 5.0% |
| !! | TATTTAAATAAATACATATT+TGG | - | chr2_4:57402126-57402145 | None:intergenic | 5.0% |
| ACCGCATGAAGAAAACGTCG+AGG | + | chr2_4:57400686-57400705 | Msa0337390:CDS | 50.0% | |
| GTAGCAGGCAACCGTATTGA+AGG | - | chr2_4:57401278-57401297 | None:intergenic | 50.0% | |
| AGCCCACACAACCTTATGTG+TGG | + | chr2_4:57401544-57401563 | Msa0337390:intron | 50.0% | |
| GAGCCACACATAAGGTTGTG+TGG | - | chr2_4:57401550-57401569 | None:intergenic | 50.0% | |
| ATCAACCGTACAATCAGGGG+CGG | - | chr2_4:57401572-57401591 | None:intergenic | 50.0% | |
| AACTTGTGCCCTATGGGCTT+AGG | + | chr2_4:57401625-57401644 | Msa0337390:intron | 50.0% | |
| ACTTGTGCCCTATGGGCTTA+GGG | + | chr2_4:57401626-57401645 | Msa0337390:intron | 50.0% | |
| ACTTGTGCCCTAAGCCCATA+GGG | - | chr2_4:57401636-57401655 | None:intergenic | 50.0% | |
| CTTCCCCCTAGAACTCAGTT+CGG | - | chr2_4:57402006-57402025 | None:intergenic | 50.0% | |
| CACTTGTGCCCTAAGCCCAT+AGG | - | chr2_4:57401637-57401656 | None:intergenic | 55.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | + | chr2_4:57400555-57400574 | Msa0337390:CDS | 60.0% | |
| TGGCTCCGCCCCTGATTGTA+CGG | + | chr2_4:57401564-57401583 | Msa0337390:intron | 60.0% | |
| GGAAGGATCCGTGAGCGATG+TGG | + | chr2_4:57402402-57402421 | Msa0337390:CDS | 60.0% | |
| CAGGGGCGGAGCCACACATA+AGG | - | chr2_4:57401558-57401577 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 57399869 | 57402540 | 57399869 | ID=Msa0337390;Name=Msa0337390 |
| chr2_4 | mRNA | 57399869 | 57402540 | 57399869 | ID=Msa0337390-mRNA-1;Parent=Msa0337390;Name=Msa0337390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|1|1|1|3|24|217 |
| chr2_4 | exon | 57399869 | 57400006 | 57399869 | ID=Msa0337390-mRNA-1:exon:17466;Parent=Msa0337390-mRNA-1 |
| chr2_4 | exon | 57400429 | 57400767 | 57400429 | ID=Msa0337390-mRNA-1:exon:17467;Parent=Msa0337390-mRNA-1 |
| chr2_4 | exon | 57402340 | 57402540 | 57402340 | ID=Msa0337390-mRNA-1:exon:17468;Parent=Msa0337390-mRNA-1 |
| chr2_4 | CDS | 57399869 | 57400006 | 57399869 | ID=Msa0337390-mRNA-1:cds;Parent=Msa0337390-mRNA-1 |
| chr2_4 | CDS | 57400429 | 57400767 | 57400429 | ID=Msa0337390-mRNA-1:cds;Parent=Msa0337390-mRNA-1 |
| chr2_4 | CDS | 57402340 | 57402516 | 57402340 | ID=Msa0337390-mRNA-1:cds;Parent=Msa0337390-mRNA-1 |
| chr2_4 | three_prime_UTR | 57402517 | 57402540 | 57402517 | ID=Msa0337390-mRNA-1:three_prime_utr;Parent=Msa0337390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
