AlfalfaGEDB | Msa0338930

M. sativa cultivar zhongmu-4 / Msa0338930

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010008 GO:0010087 GO:0010089 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338930	XP_039686772.1	85.139	646	29	6	1	617	1	608	0.0	1086

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338930	sp\|Q8VYY5\|NCRK_ARATH	42.791	645	247	13	1	614	1	554	7.74e-147	439

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338930	MtrunA17_Chr2g0326901	84.877	648	29	6	1	617	1	610	0.0	1085
Msa0338930	MtrunA17_Chr4g0028841	60.092	649	183	12	1	613	1	609	0.0	689
Msa0338930	MtrunA17_Chr7g0270121	35.250	400	183	9	144	515	309	660	8.13e-65	226
Msa0338930	MtrunA17_Chr2g0320111	38.922	334	162	7	230	530	66	390	6.76e-64	216
Msa0338930	MtrunA17_Chr7g0237401	38.172	372	169	10	170	511	28	368	1.02e-63	216
Msa0338930	MtrunA17_Chr2g0333181	41.000	300	142	6	244	517	28	318	2.17e-63	213
Msa0338930	MtrunA17_Chr6g0485761	43.051	295	131	5	244	510	283	568	6.06e-63	220
Msa0338930	MtrunA17_Chr7g0251771	40.864	301	143	6	244	517	39	331	8.16e-63	213
Msa0338930	MtrunA17_Chr5g0413981	38.095	315	157	7	235	519	43	349	3.18e-62	210
Msa0338930	MtrunA17_Chr1g0194541	40.134	299	146	5	244	515	279	571	7.42e-62	216

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338930	AT2G28250.2	42.791	645	247	13	1	614	1	554	7.86e-148	439
Msa0338930	AT2G28250.5	42.791	645	247	13	1	614	1	554	7.86e-148	439
Msa0338930	AT2G28250.4	42.791	645	247	13	1	614	1	554	7.86e-148	439
Msa0338930	AT2G28250.1	42.791	645	247	13	1	614	1	554	7.86e-148	439
Msa0338930	AT2G28250.6	42.791	645	247	13	1	614	1	554	7.86e-148	439
Msa0338930	AT2G28250.3	42.791	645	247	13	1	614	1	554	7.86e-148	439
Msa0338930	AT3G58690.1	40.656	305	141	7	244	517	75	370	9.53e-65	218
Msa0338930	AT3G20530.1	39.228	311	150	6	239	518	63	365	8.91e-63	213
Msa0338930	AT1G68690.1	36.186	409	204	10	136	514	272	653	1.92e-62	219
Msa0338930	AT1G68690.3	36.186	409	204	10	136	514	272	653	1.92e-62	219

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 120 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACTTCACTCATAGT+TGG	0.432976	2_4:+59626300	None:intergenic
AAAGGATTCCAACCGAGGCT+CGG	0.575431	2_4:+59625695	None:intergenic
AAGAATATGAACAACTTGGG+AGG	0.644410	2_4:+59627049	None:intergenic
AAGCGACTTAAAGATCAAGG+AGG	0.718218	2_4:-59627736	Msa0338930:CDS
AAGTCATGTGATTGCCATTC+AGG	0.282940	2_4:-59629073	Msa0338930:intron
AATAGAACGTGTATGCTATC+AGG	0.313329	2_4:+59625650	None:intergenic
AATCAAAGAGAAACGTTTCA+TGG	0.445401	2_4:-59627892	Msa0338930:CDS
AATGGTCTCGTCATCAGATA+AGG	0.516194	2_4:-59628198	Msa0338930:CDS
AATTGCATTAGGAGCTGCAA+GGG	0.542234	2_4:-59627353	Msa0338930:CDS
AATTTGAGGGACCGTTTAGA+TGG	0.379928	2_4:-59627415	Msa0338930:CDS

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACCAAATGAATTATCAATCG+TGG	+	chr2_4:59625343-59625362	None:intergenic	30.0%
TTAGATTATACACATGACAG+AGG	+	chr2_4:59625536-59625555	None:intergenic	30.0%
ATCACATATACATGTCCATA+TGG	+	chr2_4:59625903-59625922	None:intergenic	30.0%
CTTTCAAGATGCTAGAAAAA+GGG	+	chr2_4:59626014-59626033	None:intergenic	30.0%
ACTTTCAAGATGCTAGAAAA+AGG	+	chr2_4:59626015-59626034	None:intergenic	30.0%
ATAAGGTAGATGAAGAACTT+TGG	+	chr2_4:59626775-59626794	None:intergenic	30.0%
ACGAGAGAAAAAACAGAAAA+AGG	+	chr2_4:59626820-59626839	None:intergenic	30.0%
AATCAAAGAGAAACGTTTCA+TGG	-	chr2_4:59626875-59626894	Msa0338930:intron	30.0%
ACTGAAAAATGGTAGTAATG+TGG	-	chr2_4:59627003-59627022	Msa0338930:CDS	30.0%
AAAAATTCAGTGTCTGCTTT+AGG	+	chr2_4:59627058-59627077	None:intergenic	30.0%

Showing 1 to 10 of 243 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	59625263	59629526	59625263	ID=Msa0338930;Name=Msa0338930
chr2_4	mRNA	59625263	59629526	59625263	ID=Msa0338930-mRNA-1;Parent=Msa0338930;Name=Msa0338930-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.55\|0.5\|1\|0.77\|0.7\|10\|381\|617
chr2_4	exon	59625263	59625360	59625263	ID=Msa0338930-mRNA-1:exon:18544;Parent=Msa0338930-mRNA-1
chr2_4	exon	59625385	59625931	59625385	ID=Msa0338930-mRNA-1:exon:18543;Parent=Msa0338930-mRNA-1
chr2_4	exon	59626233	59626463	59626233	ID=Msa0338930-mRNA-1:exon:18542;Parent=Msa0338930-mRNA-1
chr2_4	exon	59626954	59627112	59626954	ID=Msa0338930-mRNA-1:exon:18541;Parent=Msa0338930-mRNA-1
chr2_4	exon	59627258	59627554	59627258	ID=Msa0338930-mRNA-1:exon:18540;Parent=Msa0338930-mRNA-1
chr2_4	exon	59627705	59627946	59627705	ID=Msa0338930-mRNA-1:exon:18539;Parent=Msa0338930-mRNA-1
chr2_4	exon	59628099	59628393	59628099	ID=Msa0338930-mRNA-1:exon:18538;Parent=Msa0338930-mRNA-1
chr2_4	exon	59628794	59628978	59628794	ID=Msa0338930-mRNA-1:exon:18537;Parent=Msa0338930-mRNA-1
chr2_4	exon	59629074	59629184	59629074	ID=Msa0338930-mRNA-1:exon:18536;Parent=Msa0338930-mRNA-1
chr2_4	exon	59629457	59629526	59629457	ID=Msa0338930-mRNA-1:exon:18535;Parent=Msa0338930-mRNA-1
chr2_4	CDS	59629457	59629526	59629457	ID=Msa0338930-mRNA-1:cds;Parent=Msa0338930-mRNA-1
chr2_4	CDS	59629074	59629184	59629074	ID=Msa0338930-mRNA-1:cds;Parent=Msa0338930-mRNA-1
chr2_4	CDS	59628794	59628978	59628794	ID=Msa0338930-mRNA-1:cds;Parent=Msa0338930-mRNA-1
chr2_4	CDS	59628099	59628393	59628099	ID=Msa0338930-mRNA-1:cds;Parent=Msa0338930-mRNA-1
chr2_4	CDS	59627705	59627946	59627705	ID=Msa0338930-mRNA-1:cds;Parent=Msa0338930-mRNA-1
chr2_4	CDS	59627258	59627554	59627258	ID=Msa0338930-mRNA-1:cds;Parent=Msa0338930-mRNA-1
chr2_4	CDS	59626954	59627112	59626954	ID=Msa0338930-mRNA-1:cds;Parent=Msa0338930-mRNA-1
chr2_4	CDS	59626233	59626463	59626233	ID=Msa0338930-mRNA-1:cds;Parent=Msa0338930-mRNA-1
chr2_4	CDS	59625668	59625931	59625668	ID=Msa0338930-mRNA-1:cds;Parent=Msa0338930-mRNA-1
chr2_4	three_prime_UTR	59625385	59625667	59625385	ID=Msa0338930-mRNA-1:three_prime_utr;Parent=Msa0338930-mRNA-1
chr2_4	three_prime_UTR	59625263	59625360	59625263	ID=Msa0338930-mRNA-1:three_prime_utr;Parent=Msa0338930-mRNA-1

Gene Sequence

>Msa0338930

ATGAAGCATCAACTCAAAGTTTCTGTTGCTCTTGTTATTAGCTTGCTATGGTTTCAGCACTCATTTTGTGCAAAGGAACCATCTGATAGTGGTCGAAACAAGTGGAAATGTAAATGTTCTTTGCGAGCGAATCAGAGATACTCTATTTCTAATTGTTCCAAGTCATGTGATTGCCATTCAGGCGAAATCTGTGATCACATCCGGAATACTGTTTTGTTTGCGGCTTTACTTATTATTTTTCCTTTCATGTATATGCTGAAGAGAGTTCATCCATATGGACATGTATATGTGATTCAAATGGATTTCCTAAAGTGGCAGCCGGAAGCCATAATCCTAATTGCTTTATTGCCTGCAACTGCATCTGGGATTTTGAGTCATGCAGGAACTGCTAAGATGACACTAGGTTCAAAGTCACACATTTCGAGCAAGATTGTAATAATCATTCTAATAATGTGTGTTACATGCACAATCATTGCATTACTCGCCTTTGTTGTATGTTATGTTCGCCGAAGGGAAAGACATCATCCTATTCAATCACCAATGGTCTCGTCATCAGATAAGGAAACAAGTTATAGTAGTACCAGCAACTTCATTAGTCAAAGGACTTCTTTTGTTCCGGAAACAAAAAGCGTTATAAATTCTCCTATTAGTCATATTACAAGATGCCTTCAAAAAGCCTCTATCTTGTTTGGGAATCAAAGAGAAACGTTTCATGGAAATATTATTCAATTCTCATTTTCTGAACTGGAAAATGCCACTGAAAACTTTTCAGCTTCAAACCTCATTGGACTAGGTGGAAGTAGTTATGTATACCGTGGTCAACTGAAAAATGGTAGTAATGTGGCAGTCAAGCGACTTAAAGATCAAGGAGGGCCTAAAGCAGACACTGAATTTTTCACAGAGATTGAACTATTGTCTAGACTTCATCACTGTCATCTGGTGCCATTGATTGGATACTGCTCAGAATTGAAAGGAAAAAATGTTCAGAGGTTACTTGTGTTTGACTACATGAATAACGGAAATTTGAGGGACCGTTTAGATGGAGTTTTTGGAAAAAATATGGATTGGTCTACTCGTGTTACAATTGCATTAGGAGCTGCAAGGGGCTTGGAGTATCTTCATGAAGCAGCTGCGCCAAGAATTCTCCACAGAGATGTCAAATCAACAAACATTCTTCTTGATAAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAGACTTGAGATCTGATAGCCTCCCAAGTTGTTCATATTCTTCACAAAGAATGAAGGGGACATTTGGCTATTTTGCACCTGAGTATGCAATTGTTGGGAGATCCTCTATTGAGTCAGATGTCTTCAGTTTCGGCGTGGCTGCTCCTCGCTTACAAGATAGTAGGCGAGTATTGACAGAGTTGGCTGATCCGCAATTGAAAGGAAACTTCCCAGAAGATGAGGTGCATATAATGGCAAACCTAGCAAAGGAGTGCTTACTGTTGGATCCTGATAATAGACCAACTATGAGTGAAGTTGTTTTAATTCTTTCAAGTATTTCTCGAACCAAATCTAGAAGGAGAAGATACATTCAATTGTGCCTTTTTCAGGACCGAGATGATGATGCAGAACAGCAAAGACAATCTTCATTGAGTAGATATCCACCTCACAATTCATTGCCGCGTTGTACTGACTACGATCTTCGTGTTGGAAATGAAGATAAAGATGTAGATACAATTTCAACCGAGTATATGAAAAGTTTGATCCTCTTGACTTCAAAAGGTGAGAAGTGGCATGCATCAGAAGAGGAAATGGTAGACCTATCCGAGCCTCGGTTGGAATCCTTTTGCATGGAAAACATCAGTTTCCCCTGA

Protein sequence

>Msa0338930

MKHQLKVSVALVISLLWFQHSFCAKEPSDSGRNKWKCKCSLRANQRYSISNCSKSCDCHSGEICDHIRNTVLFAALLIIFPFMYMLKRVHPYGHVYVIQMDFLKWQPEAIILIALLPATASGILSHAGTAKMTLGSKSHISSKIVIIILIMCVTCTIIALLAFVVCYVRRRERHHPIQSPMVSSSDKETSYSSTSNFISQRTSFVPETKSVINSPISHITRCLQKASILFGNQRETFHGNIIQFSFSELENATENFSASNLIGLGGSSYVYRGQLKNGSNVAVKRLKDQGGPKADTEFFTEIELLSRLHHCHLVPLIGYCSELKGKNVQRLLVFDYMNNGNLRDRLDGVFGKNMDWSTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKDLRSDSLPSCSYSSQRMKGTFGYFAPEYAIVGRSSIESDVFSFGVAAPRLQDSRRVLTELADPQLKGNFPEDEVHIMANLAKECLLLDPDNRPTMSEVVLILSSISRTKSRRRRYIQLCLFQDRDDDAEQQRQSSLSRYPPHNSLPRCTDYDLRVGNEDKDVDTISTEYMKSLILLTSKGEKWHASEEEMVDLSEPRLESFCMENISFP*