Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340050 | XP_003597516.1 | 95.635 | 252 | 11 | 0 | 1 | 252 | 1 | 252 | 1.05e-178 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340050 | sp|Q9SZL8|FRS5_ARATH | 43.443 | 122 | 68 | 1 | 50 | 170 | 62 | 183 | 4.11e-22 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0340050 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340050 | MtrunA17_Chr2g0329361 | 95.635 | 252 | 11 | 0 | 1 | 252 | 1 | 252 | 0.0 | 501 |
| Msa0340050 | MtrunA17_Chr7g0233911 | 39.362 | 188 | 97 | 5 | 60 | 245 | 33 | 205 | 1.26e-42 | 144 |
| Msa0340050 | MtrunA17_Chr3g0078041 | 36.269 | 193 | 103 | 5 | 55 | 243 | 44 | 220 | 2.79e-35 | 125 |
| Msa0340050 | MtrunA17_Chr2g0329421 | 36.757 | 185 | 104 | 4 | 60 | 243 | 26 | 198 | 3.09e-34 | 122 |
| Msa0340050 | MtrunA17_Chr4g0033611 | 37.222 | 180 | 103 | 4 | 60 | 239 | 75 | 244 | 1.04e-31 | 117 |
| Msa0340050 | MtrunA17_Chr1g0202341 | 43.119 | 109 | 61 | 1 | 59 | 167 | 49 | 156 | 1.18e-23 | 99.8 |
| Msa0340050 | MtrunA17_Chr5g0448761 | 43.860 | 114 | 62 | 2 | 59 | 170 | 58 | 171 | 4.57e-20 | 89.4 |
| Msa0340050 | MtrunA17_Chr2g0287061 | 35.862 | 145 | 70 | 3 | 60 | 198 | 28 | 155 | 2.91e-19 | 86.7 |
| Msa0340050 | MtrunA17_Chr2g0287061 | 33.333 | 105 | 55 | 1 | 60 | 164 | 182 | 271 | 1.56e-14 | 72.8 |
| Msa0340050 | MtrunA17_Chr6g0458391 | 35.115 | 131 | 83 | 1 | 61 | 191 | 225 | 353 | 9.84e-18 | 82.4 |
| Msa0340050 | MtrunA17_Chr6g0458391 | 29.012 | 162 | 105 | 3 | 40 | 195 | 65 | 222 | 3.25e-13 | 68.9 |
| Msa0340050 | MtrunA17_Chr5g0440451 | 36.036 | 111 | 56 | 1 | 60 | 170 | 42 | 137 | 1.44e-17 | 82.0 |
| Msa0340050 | MtrunA17_Chr3g0080351 | 30.216 | 139 | 80 | 2 | 49 | 170 | 58 | 196 | 4.09e-15 | 74.7 |
| Msa0340050 | MtrunA17_Chr2g0329031 | 33.663 | 101 | 62 | 1 | 65 | 165 | 18 | 113 | 4.68e-13 | 68.6 |
| Msa0340050 | MtrunA17_Chr3g0082121 | 36.667 | 120 | 68 | 4 | 50 | 167 | 35 | 148 | 5.34e-13 | 68.2 |
| Msa0340050 | MtrunA17_Chr1g0203721 | 37.143 | 105 | 64 | 1 | 63 | 167 | 65 | 167 | 9.32e-13 | 67.8 |
| Msa0340050 | MtrunA17_Chr2g0291591 | 28.188 | 149 | 100 | 2 | 16 | 164 | 20 | 161 | 4.12e-12 | 65.5 |
| Msa0340050 | MtrunA17_Chr2g0291581 | 32.075 | 106 | 62 | 2 | 61 | 164 | 71 | 168 | 1.06e-11 | 64.3 |
| Msa0340050 | MtrunA17_Chr1g0171741 | 34.951 | 103 | 64 | 3 | 65 | 166 | 137 | 237 | 1.45e-11 | 62.8 |
| Msa0340050 | MtrunA17_Chr1g0207551 | 30.357 | 112 | 73 | 2 | 54 | 165 | 28 | 134 | 2.43e-11 | 63.5 |
| Msa0340050 | MtrunA17_Chr8g0363841 | 30.000 | 120 | 72 | 3 | 51 | 165 | 7 | 119 | 4.00e-11 | 62.8 |
| Msa0340050 | MtrunA17_Chr5g0401121 | 33.333 | 126 | 74 | 4 | 48 | 169 | 43 | 162 | 4.02e-11 | 60.1 |
| Msa0340050 | MtrunA17_Chr2g0287651 | 32.710 | 107 | 70 | 2 | 62 | 167 | 76 | 181 | 4.83e-11 | 62.4 |
| Msa0340050 | MtrunA17_Chr2g0294841 | 33.094 | 139 | 74 | 6 | 61 | 187 | 45 | 176 | 7.63e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340050 | AT2G43280.1 | 43.077 | 195 | 89 | 6 | 54 | 243 | 15 | 192 | 1.09e-41 | 142 |
| Msa0340050 | AT3G07500.1 | 39.894 | 188 | 106 | 3 | 56 | 243 | 28 | 208 | 2.67e-39 | 136 |
| Msa0340050 | AT2G43280.2 | 44.509 | 173 | 74 | 6 | 76 | 243 | 2 | 157 | 1.52e-37 | 130 |
| Msa0340050 | AT3G59470.3 | 35.586 | 222 | 124 | 7 | 31 | 244 | 32 | 242 | 3.64e-35 | 126 |
| Msa0340050 | AT3G59470.1 | 35.586 | 222 | 124 | 7 | 31 | 244 | 32 | 242 | 3.64e-35 | 126 |
| Msa0340050 | AT3G59470.2 | 35.586 | 222 | 124 | 7 | 31 | 244 | 44 | 254 | 4.87e-35 | 126 |
| Msa0340050 | AT4G12850.1 | 34.783 | 184 | 104 | 4 | 60 | 243 | 10 | 177 | 4.08e-33 | 119 |
| Msa0340050 | AT4G38180.1 | 43.443 | 122 | 68 | 1 | 50 | 170 | 62 | 183 | 4.18e-23 | 98.6 |
| Msa0340050 | AT4G12850.2 | 39.048 | 105 | 59 | 1 | 60 | 164 | 10 | 109 | 4.97e-22 | 89.0 |
| Msa0340050 | AT4G12850.4 | 39.048 | 105 | 59 | 1 | 60 | 164 | 10 | 109 | 5.60e-22 | 89.0 |
| Msa0340050 | AT5G18960.2 | 42.857 | 105 | 45 | 1 | 60 | 164 | 42 | 131 | 8.14e-21 | 91.7 |
| Msa0340050 | AT5G18960.2 | 35.238 | 105 | 53 | 1 | 60 | 164 | 210 | 299 | 2.59e-15 | 75.5 |
| Msa0340050 | AT5G18960.1 | 42.857 | 105 | 45 | 1 | 60 | 164 | 42 | 131 | 8.14e-21 | 91.7 |
| Msa0340050 | AT5G18960.1 | 35.238 | 105 | 53 | 1 | 60 | 164 | 210 | 299 | 2.59e-15 | 75.5 |
| Msa0340050 | AT3G06250.2 | 40.566 | 106 | 48 | 1 | 59 | 164 | 26 | 116 | 1.05e-19 | 88.6 |
| Msa0340050 | AT3G06250.2 | 36.066 | 122 | 59 | 2 | 43 | 164 | 176 | 278 | 1.06e-16 | 79.7 |
| Msa0340050 | AT3G06250.1 | 40.566 | 106 | 48 | 1 | 59 | 164 | 26 | 116 | 1.05e-19 | 88.6 |
| Msa0340050 | AT3G06250.1 | 36.066 | 122 | 59 | 2 | 43 | 164 | 176 | 278 | 1.06e-16 | 79.7 |
| Msa0340050 | AT3G06250.3 | 40.566 | 106 | 48 | 1 | 59 | 164 | 26 | 116 | 1.05e-19 | 88.6 |
| Msa0340050 | AT3G06250.3 | 36.066 | 122 | 59 | 2 | 43 | 164 | 176 | 278 | 1.06e-16 | 79.7 |
| Msa0340050 | AT2G27110.2 | 40.187 | 107 | 47 | 2 | 60 | 166 | 48 | 137 | 5.51e-15 | 74.7 |
| Msa0340050 | AT2G27110.1 | 40.187 | 107 | 47 | 2 | 60 | 166 | 48 | 137 | 5.51e-15 | 74.7 |
| Msa0340050 | AT3G22170.2 | 30.894 | 123 | 74 | 1 | 59 | 170 | 68 | 190 | 5.06e-14 | 72.0 |
| Msa0340050 | AT3G22170.1 | 30.894 | 123 | 74 | 1 | 59 | 170 | 68 | 190 | 5.06e-14 | 72.0 |
| Msa0340050 | AT2G32250.2 | 34.653 | 101 | 61 | 1 | 64 | 164 | 41 | 136 | 1.67e-13 | 70.1 |
| Msa0340050 | AT2G32250.4 | 34.653 | 101 | 61 | 1 | 64 | 164 | 41 | 136 | 1.67e-13 | 70.1 |
| Msa0340050 | AT2G32250.5 | 34.653 | 101 | 61 | 1 | 64 | 164 | 41 | 136 | 1.68e-13 | 70.1 |
| Msa0340050 | AT2G32250.6 | 34.653 | 101 | 61 | 1 | 64 | 164 | 41 | 136 | 1.74e-13 | 70.1 |
| Msa0340050 | AT2G32250.1 | 34.653 | 101 | 61 | 1 | 64 | 164 | 41 | 136 | 1.74e-13 | 70.1 |
| Msa0340050 | AT2G32250.3 | 34.653 | 101 | 61 | 1 | 64 | 164 | 41 | 136 | 1.74e-13 | 70.1 |
| Msa0340050 | AT4G19990.7 | 31.579 | 114 | 67 | 1 | 64 | 166 | 38 | 151 | 8.79e-13 | 68.2 |
| Msa0340050 | AT4G19990.5 | 31.579 | 114 | 67 | 1 | 64 | 166 | 24 | 137 | 9.33e-13 | 68.2 |
| Msa0340050 | AT4G19990.3 | 31.579 | 114 | 67 | 1 | 64 | 166 | 24 | 137 | 9.42e-13 | 68.2 |
| Msa0340050 | AT4G19990.4 | 31.579 | 114 | 67 | 1 | 64 | 166 | 24 | 137 | 9.42e-13 | 68.2 |
| Msa0340050 | AT4G19990.6 | 31.579 | 114 | 67 | 1 | 64 | 166 | 24 | 137 | 1.04e-12 | 67.8 |
| Msa0340050 | AT4G19990.2 | 31.579 | 114 | 67 | 1 | 64 | 166 | 24 | 137 | 1.04e-12 | 67.8 |
| Msa0340050 | AT2G32250.8 | 34.000 | 100 | 61 | 1 | 65 | 164 | 1 | 95 | 1.26e-12 | 67.8 |
| Msa0340050 | AT2G32250.7 | 34.000 | 100 | 61 | 1 | 65 | 164 | 1 | 95 | 1.30e-12 | 67.8 |
| Msa0340050 | AT1G76320.3 | 32.673 | 101 | 63 | 1 | 65 | 165 | 1 | 96 | 2.84e-12 | 66.6 |
| Msa0340050 | AT1G76320.1 | 30.159 | 126 | 82 | 2 | 65 | 190 | 1 | 120 | 2.94e-12 | 66.6 |
| Msa0340050 | AT1G76320.4 | 30.159 | 126 | 82 | 2 | 65 | 190 | 1 | 120 | 2.94e-12 | 66.6 |
| Msa0340050 | AT1G76320.2 | 30.159 | 126 | 82 | 2 | 65 | 190 | 1 | 120 | 3.02e-12 | 66.6 |
| Msa0340050 | AT1G80010.1 | 33.654 | 104 | 63 | 1 | 61 | 164 | 95 | 192 | 4.54e-12 | 65.9 |
| Msa0340050 | AT1G52520.1 | 32.692 | 104 | 64 | 1 | 61 | 164 | 85 | 182 | 8.48e-12 | 65.1 |
| Msa0340050 | AT4G15090.1 | 30.841 | 107 | 72 | 1 | 59 | 165 | 49 | 153 | 1.76e-11 | 64.3 |
| Msa0340050 | AT4G15090.5 | 30.841 | 107 | 72 | 1 | 59 | 165 | 49 | 153 | 1.76e-11 | 64.3 |
| Msa0340050 | AT4G15090.3 | 30.841 | 107 | 72 | 1 | 59 | 165 | 49 | 153 | 1.76e-11 | 64.3 |
| Msa0340050 | AT4G15090.2 | 30.841 | 107 | 72 | 1 | 59 | 165 | 49 | 153 | 1.76e-11 | 64.3 |
| Msa0340050 | AT4G15090.4 | 30.841 | 107 | 72 | 1 | 59 | 165 | 49 | 153 | 1.76e-11 | 64.3 |
Find 104 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTGTTGCCAGACATTC+TGG | 0.240332 | 2_4:-61346586 | Msa0340050:three_prime_UTR |
| CATGATAAGGTTGGCTTTAC+GGG | 0.249268 | 2_4:-61347735 | Msa0340050:CDS |
| TGTATGTTCCTTCACAAATT+TGG | 0.258446 | 2_4:+61347691 | None:intergenic |
| TGTTGCTGGGTTTCTCTACT+TGG | 0.271829 | 2_4:-61350325 | Msa0340050:five_prime_UTR |
| CCATGATAAGGTTGGCTTTA+CGG | 0.274945 | 2_4:-61347736 | Msa0340050:CDS |
| TCTCGGGTGGCTGGTGGAGG+AGG | 0.303392 | 2_4:+61347770 | None:intergenic |
| TCAGGCAGCATATAGTATAT+TGG | 0.304154 | 2_4:-61346468 | Msa0340050:three_prime_UTR |
| TTCTGGTGTGTATCATGTTC+GGG | 0.310325 | 2_4:-61346435 | Msa0340050:three_prime_UTR |
| CCTCAATCTCTCTGATATTT+CGG | 0.319830 | 2_4:+61346653 | None:intergenic |
| CTATTCGCTTTGCTTAAATC+TGG | 0.323238 | 2_4:-61349986 | Msa0340050:five_prime_UTR |
| AAATACAATTCTGAACGATT+TGG | 0.340360 | 2_4:-61346719 | Msa0340050:CDS |
| TTACTCGCGAACGGCGGTTA+TGG | 0.347299 | 2_4:+61347879 | None:intergenic |
| AATGTAATTCTATCAACATT+TGG | 0.351343 | 2_4:-61346526 | Msa0340050:three_prime_UTR |
| CGAGTAAATAACAAGCTAAT+TGG | 0.351629 | 2_4:-61347863 | Msa0340050:CDS |
| CTGGGTTTCTCTACTTGGTA+TGG | 0.352595 | 2_4:-61350320 | Msa0340050:five_prime_UTR |
| CAGGCAGCATATAGTATATT+GGG | 0.358188 | 2_4:-61346467 | Msa0340050:three_prime_UTR |
| TTTCTGGTGTGTATCATGTT+CGG | 0.364987 | 2_4:-61346436 | Msa0340050:three_prime_UTR |
| ATGCAAGGATACAATGGATA+TGG | 0.368107 | 2_4:+61346347 | None:intergenic |
| TCATGGCTTGACAACCTTCT+CGG | 0.378795 | 2_4:+61347753 | None:intergenic |
| GAAAACTTCAAATTGCGAAT+AGG | 0.381872 | 2_4:+61346550 | None:intergenic |
| CCTTCTCGGGTGGCTGGTGG+AGG | 0.389419 | 2_4:+61347767 | None:intergenic |
| GAAGTTCCATGGCGAGGATC+CGG | 0.395395 | 2_4:-61347647 | Msa0340050:CDS |
| TTCAACAAGAGCAGCATGTT+AGG | 0.401213 | 2_4:+61346391 | None:intergenic |
| CTCACTAACCAAGTGCTTCC+CGG | 0.404686 | 2_4:+61347628 | None:intergenic |
| CATGGCTTGACAACCTTCTC+GGG | 0.412731 | 2_4:+61347754 | None:intergenic |
| AAGTATCTCACCAGAATGTC+TGG | 0.414991 | 2_4:+61346576 | None:intergenic |
| GACACATTCGAACCATTCAT+AGG | 0.419991 | 2_4:-61347983 | Msa0340050:CDS |
| AGTGGTCATATTAAAACTTC+AGG | 0.420723 | 2_4:-61346486 | Msa0340050:three_prime_UTR |
| TGACAACCTTCTCGGGTGGC+TGG | 0.424878 | 2_4:+61347761 | None:intergenic |
| GACCGTTTGTGCAACTGAAT+GGG | 0.430776 | 2_4:+61350216 | None:intergenic |
| TCCTCGCCATGGAACTTCAC+TGG | 0.443266 | 2_4:+61347652 | None:intergenic |
| AGGATGATGGATCACCAATC+TGG | 0.443741 | 2_4:-61348154 | Msa0340050:CDS |
| TGTCACAGGACGAGAAAGAT+AGG | 0.454669 | 2_4:-61346822 | Msa0340050:intron |
| AATCAAATCCCTGGCCAGAT+TGG | 0.455766 | 2_4:+61348140 | None:intergenic |
| CGAACAACCTGTAGCAGATT+CGG | 0.459103 | 2_4:-61348005 | Msa0340050:CDS |
| CCGAAATATCAGAGAGATTG+AGG | 0.462386 | 2_4:-61346653 | Msa0340050:CDS |
| CTCGGGTGGCTGGTGGAGGA+GGG | 0.466145 | 2_4:+61347771 | None:intergenic |
| ATCAACATTTGGCTTGAAGT+TGG | 0.469414 | 2_4:-61346515 | Msa0340050:three_prime_UTR |
| AAATGGTTTACCTATTATCC+AGG | 0.470951 | 2_4:+61349938 | None:intergenic |
| CTGGCAACAATGGAATATAC+TGG | 0.471446 | 2_4:+61346595 | None:intergenic |
| AATAAATCAAAATGTGCAGC+TGG | 0.482642 | 2_4:+61346305 | None:intergenic |
| GATGGATCACCAATCTGGCC+AGG | 0.492007 | 2_4:-61348149 | Msa0340050:CDS |
| CAACCTTCTCGGGTGGCTGG+TGG | 0.497367 | 2_4:+61347764 | None:intergenic |
| AGGTTGGCTTTACGGGATGA+AGG | 0.498475 | 2_4:-61347728 | Msa0340050:CDS |
| AGACATTCTGGTGAGATACT+TGG | 0.500017 | 2_4:-61346574 | Msa0340050:three_prime_UTR |
| TATTATCCAGGTTGAAAACT+AGG | 0.501348 | 2_4:+61349950 | None:intergenic |
| TGACCGTTTGTGCAACTGAA+TGG | 0.502026 | 2_4:+61350215 | None:intergenic |
| AAGTTCCATGGCGAGGATCC+GGG | 0.502060 | 2_4:-61347646 | Msa0340050:CDS |
| TCAAATTACAACAAAGGTGA+AGG | 0.504520 | 2_4:+61350245 | None:intergenic |
| AAGGTTGTCAAGCCATGATA+AGG | 0.504631 | 2_4:-61347748 | Msa0340050:CDS |
| ACGAAAGGCAAAAGTACAAA+AGG | 0.509895 | 2_4:-61346768 | Msa0340050:CDS |
| CTTTACGGGATGAAGGGAAG+TGG | 0.510166 | 2_4:-61347721 | Msa0340050:CDS |
| AAGATCAAGTGTAGAAGCTC+CGG | 0.511394 | 2_4:+61350192 | None:intergenic |
| CCTCGCCATGGAACTTCACT+GGG | 0.518653 | 2_4:+61347653 | None:intergenic |
| AACAATTTAGAATTATGTAC+AGG | 0.522470 | 2_4:-61348046 | Msa0340050:CDS |
| CGCTCGAGTTGCACAACGAA+AGG | 0.523644 | 2_4:-61346783 | Msa0340050:CDS |
| CCGTAAAGCCAACCTTATCA+TGG | 0.524530 | 2_4:+61347736 | None:intergenic |
| CTTCTGCTATAATAGGATGA+TGG | 0.528986 | 2_4:-61348167 | Msa0340050:intron |
| ACCGTTTGTGCAACTGAATG+GGG | 0.532948 | 2_4:+61350217 | None:intergenic |
| AATGGCCATGGTAGGAGGAT+AGG | 0.534923 | 2_4:-61347920 | Msa0340050:CDS |
| AATGTGTCCGAATCTGCTAC+AGG | 0.536026 | 2_4:+61347998 | None:intergenic |
| GGTATGGAGTAGTTCTTCCA+TGG | 0.537659 | 2_4:-61350304 | Msa0340050:five_prime_UTR |
| ACCAGAATGTCTGGCAACAA+TGG | 0.538189 | 2_4:+61346585 | None:intergenic |
| GCGAGGATCCGGGAAGCACT+TGG | 0.541373 | 2_4:-61347636 | Msa0340050:CDS |
| CCTCCACCAGCCACCCGAGA+AGG | 0.543028 | 2_4:-61347767 | Msa0340050:CDS |
| AAGGTGAAGGGAATAAGAGA+AGG | 0.553305 | 2_4:+61350258 | None:intergenic |
| CAATTAATGCAAGGATACAA+TGG | 0.556643 | 2_4:+61346341 | None:intergenic |
| TGCTTCCCGGATCCTCGCCA+TGG | 0.557183 | 2_4:+61347641 | None:intergenic |
| TCAGTTGCACAAACGGTCAC+CGG | 0.558306 | 2_4:-61350211 | Msa0340050:five_prime_UTR |
| TTTACGGGATGAAGGGAAGT+GGG | 0.561477 | 2_4:-61347720 | Msa0340050:CDS |
| GGCCAGGGATTTGATTCAGA+TGG | 0.568231 | 2_4:-61348133 | Msa0340050:CDS |
| GGTTGGCTTTACGGGATGAA+GGG | 0.571058 | 2_4:-61347727 | Msa0340050:CDS |
| TAGGCATGCAGTTCAACTCA+AGG | 0.572467 | 2_4:-61347964 | Msa0340050:CDS |
| TCTACAATGGCCATGGTAGG+AGG | 0.572483 | 2_4:-61347925 | Msa0340050:CDS |
| CGGAGTCACTGCACTAACCA+TGG | 0.573921 | 2_4:+61350287 | None:intergenic |
| GGAATAAGAGAAGGGTTCCT+CGG | 0.579433 | 2_4:+61350267 | None:intergenic |
| TACCATCTGAATCAAATCCC+TGG | 0.581654 | 2_4:+61348131 | None:intergenic |
| GCTTGAAGTTGGTTGTGTAG+TGG | 0.583684 | 2_4:-61346504 | Msa0340050:three_prime_UTR |
| GCTTGTTATTTACTCGCGAA+CGG | 0.583871 | 2_4:+61347870 | None:intergenic |
| GGAGGATAGGATTTACAGTA+CGG | 0.583900 | 2_4:-61347907 | Msa0340050:CDS |
| CAAATTACAACAAAGGTGAA+GGG | 0.591945 | 2_4:+61350246 | None:intergenic |
| ATTCGATTACAATTAATGCA+AGG | 0.594392 | 2_4:+61346332 | None:intergenic |
| AGAGAATTCTACAATGGCCA+TGG | 0.595180 | 2_4:-61347932 | Msa0340050:CDS |
| TTGTCAAGCCATGATAAGGT+TGG | 0.599156 | 2_4:-61347744 | Msa0340050:CDS |
| CCCAGTGAAGTTCCATGGCG+AGG | 0.602502 | 2_4:-61347653 | Msa0340050:CDS |
| TAAATCCTATCCTCCTACCA+TGG | 0.603101 | 2_4:+61347915 | None:intergenic |
| GGTTGTTCAAATTACAACAA+AGG | 0.604368 | 2_4:+61350239 | None:intergenic |
| TTGAACTGCATGCCTATGAA+TGG | 0.604946 | 2_4:+61347971 | None:intergenic |
| TGAGTCCCAGTGAAGTTCCA+TGG | 0.607822 | 2_4:-61347658 | Msa0340050:CDS |
| ATGGATCACCAATCTGGCCA+GGG | 0.613451 | 2_4:-61348148 | Msa0340050:CDS |
| AATTCTACAATGGCCATGGT+AGG | 0.613869 | 2_4:-61347928 | Msa0340050:CDS |
| GGCTTGACAACCTTCTCGGG+TGG | 0.617601 | 2_4:+61347757 | None:intergenic |
| GGTTGTCACCAAATTTGTGA+AGG | 0.624088 | 2_4:-61347699 | Msa0340050:CDS |
| CGGGAAGCACTTGGTTAGTG+AGG | 0.627824 | 2_4:-61347627 | Msa0340050:intron |
| AATGGATATGGTTAGTCACA+AGG | 0.628549 | 2_4:+61346359 | None:intergenic |
| ATGGATATGGTTAGTCACAA+GGG | 0.630431 | 2_4:+61346360 | None:intergenic |
| AGGCATGCAGTTCAACTCAA+GGG | 0.634792 | 2_4:-61347963 | Msa0340050:CDS |
| TGTTATTTACTCGCGAACGG+CGG | 0.635708 | 2_4:+61347873 | None:intergenic |
| AGGTGAAGGGAATAAGAGAA+GGG | 0.642031 | 2_4:+61350259 | None:intergenic |
| GCAACTCGAGCGATAGCTCA+CGG | 0.642945 | 2_4:+61346794 | None:intergenic |
| GAAGCAAGAGAATTCTACAA+TGG | 0.657489 | 2_4:-61347938 | Msa0340050:CDS |
| CCGTTTGTGCAACTGAATGG+GGG | 0.675221 | 2_4:+61350218 | None:intergenic |
| TGGTTAGTGCAGTGACTCCG+AGG | 0.685287 | 2_4:-61350284 | Msa0340050:five_prime_UTR |
| CATGCAGTTCAACTCAAGGG+AGG | 0.700261 | 2_4:-61347960 | Msa0340050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATCATTTATTCTTTTT+TGG | - | chr2_4:61348104-61348123 | Msa0340050:CDS | 10.0% |
| !! | ATTAATGTTTATGATTATTA+TGG | - | chr2_4:61348140-61348159 | Msa0340050:CDS | 10.0% |
| !! | TTAATGTTTATGATTATTAT+GGG | - | chr2_4:61348141-61348160 | Msa0340050:CDS | 10.0% |
| !! | ATTTAAATATTTATGATCAA+TGG | + | chr2_4:61348264-61348283 | None:intergenic | 10.0% |
| !! | AATATTTAAATTTCCAAACA+AGG | - | chr2_4:61348273-61348292 | Msa0340050:intron | 15.0% |
| !! | TGTAAGTAATAACAAACAAA+GGG | - | chr2_4:61346469-61346488 | Msa0340050:three_prime_UTR | 20.0% |
| !! | AAGTTGGAATATTGAAAAAT+GGG | + | chr2_4:61346523-61346542 | None:intergenic | 20.0% |
| !! | AAAGTTGGAATATTGAAAAA+TGG | + | chr2_4:61346524-61346543 | None:intergenic | 20.0% |
| !!! | GAAACAAATTAATTCTGAAA+TGG | + | chr2_4:61346737-61346756 | None:intergenic | 20.0% |
| !!! | AATTAATTTGTTTCTTTGTC+CGG | - | chr2_4:61346743-61346762 | Msa0340050:CDS | 20.0% |
| !! | AATTAGGATAGTATTTATTG+CGG | - | chr2_4:61347257-61347276 | Msa0340050:intron | 20.0% |
| !! | GATTGTATTTGTAATTGAAT+AGG | - | chr2_4:61347965-61347984 | Msa0340050:CDS | 20.0% |
| !! | AATAGGAAAGAATTTATGTT+GGG | - | chr2_4:61347982-61348001 | Msa0340050:CDS | 20.0% |
| !!! | AATCATTTATTCTTTTTTGG+TGG | - | chr2_4:61348107-61348126 | Msa0340050:CDS | 20.0% |
| !! | AGATATTCACATATTCTTAA+TGG | + | chr2_4:61348169-61348188 | None:intergenic | 20.0% |
| !!! | AACAATTTAGAATTATGTAC+AGG | - | chr2_4:61348587-61348606 | Msa0340050:intron | 20.0% |
| !! | TATCAAAATACAGATTCTTA+TGG | - | chr2_4:61349304-61349323 | Msa0340050:intron | 20.0% |
| !!! | TTTTAGAATATCTTATCTCT+GGG | - | chr2_4:61349330-61349349 | Msa0340050:intron | 20.0% |
| !! | GACTATATTATGTATATTCT+TGG | + | chr2_4:61349567-61349586 | None:intergenic | 20.0% |
| !! | AATGTAATTCTATCAACATT+TGG | - | chr2_4:61350107-61350126 | Msa0340050:intron | 20.0% |
| ! | GTGTAAGTAATAACAAACAA+AGG | - | chr2_4:61346468-61346487 | Msa0340050:three_prime_UTR | 25.0% |
| ! | TTTCTGAACTCAATTGAAAT+GGG | - | chr2_4:61346541-61346560 | Msa0340050:three_prime_UTR | 25.0% |
| !! | GAGTTCAATTATACATTTTC+CGG | + | chr2_4:61346765-61346784 | None:intergenic | 25.0% |
| ! | AACAACTAATTACTAACACT+TGG | + | chr2_4:61346897-61346916 | None:intergenic | 25.0% |
| ! | ATACATGTCCAAATTACTTA+AGG | + | chr2_4:61347302-61347321 | None:intergenic | 25.0% |
| ! | TTAAGTAATTTGGACATGTA+TGG | - | chr2_4:61347301-61347320 | Msa0340050:intron | 25.0% |
| ! | GAATAGGAAAGAATTTATGT+TGG | - | chr2_4:61347981-61348000 | Msa0340050:CDS | 25.0% |
| ! | TATCTTGGACATATTAGATT+TGG | - | chr2_4:61348076-61348095 | Msa0340050:CDS | 25.0% |
| ! | ATCTTGGACATATTAGATTT+GGG | - | chr2_4:61348077-61348096 | Msa0340050:CDS | 25.0% |
| !! | ATCTTTTTGCTAATAGCTTA+TGG | - | chr2_4:61348185-61348204 | Msa0340050:intron | 25.0% |
| ! | ACATTATGAATAGCACTAAA+TGG | + | chr2_4:61348235-61348254 | None:intergenic | 25.0% |
| ! | GAAACAGGAAAATAAAAAAG+AGG | - | chr2_4:61348308-61348327 | Msa0340050:intron | 25.0% |
| ! | TAAACTATAAAGTGCACTAT+TGG | + | chr2_4:61349041-61349060 | None:intergenic | 25.0% |
| !!! | TTCTAGAATACCTTATCTAT+GGG | - | chr2_4:61349233-61349252 | Msa0340050:intron | 25.0% |
| !!! | CTTTTAGAATATCTTATCTC+TGG | - | chr2_4:61349329-61349348 | Msa0340050:intron | 25.0% |
| !!! | TGTTTGAGATTTTTTTTAGG+GGG | + | chr2_4:61349624-61349643 | None:intergenic | 25.0% |
| !!! | CTGTTTGAGATTTTTTTTAG+GGG | + | chr2_4:61349625-61349644 | None:intergenic | 25.0% |
| !!! | CCTGTTTGAGATTTTTTTTA+GGG | + | chr2_4:61349626-61349645 | None:intergenic | 25.0% |
| !!! | TCCTGTTTGAGATTTTTTTT+AGG | + | chr2_4:61349627-61349646 | None:intergenic | 25.0% |
| !! | AGGATTGTATTAACTCTTTT+AGG | - | chr2_4:61349643-61349662 | Msa0340050:intron | 25.0% |
| !! | GGATTGTATTAACTCTTTTA+GGG | - | chr2_4:61349644-61349663 | Msa0340050:intron | 25.0% |
| ! | AAATACAATTCTGAACGATT+TGG | - | chr2_4:61349914-61349933 | Msa0340050:intron | 25.0% |
| ! | GAAGAAAAATCAGATTTAGA+TGG | - | chr2_4:61350002-61350021 | Msa0340050:intron | 25.0% |
| !! | ATATTGGGAAATTCATTTTC+TGG | - | chr2_4:61350181-61350200 | Msa0340050:intron | 25.0% |
| ! | ATTCGATTACAATTAATGCA+AGG | + | chr2_4:61350304-61350323 | None:intergenic | 25.0% |
| CAAATTACAACAAAGGTGAA+GGG | + | chr2_4:61346390-61346409 | None:intergenic | 30.0% | |
| TCAAATTACAACAAAGGTGA+AGG | + | chr2_4:61346391-61346410 | None:intergenic | 30.0% | |
| GGTTGTTCAAATTACAACAA+AGG | + | chr2_4:61346397-61346416 | None:intergenic | 30.0% | |
| TGGAATATTGAAAAATGGGA+GGG | + | chr2_4:61346519-61346538 | None:intergenic | 30.0% | |
| TTGGAATATTGAAAAATGGG+AGG | + | chr2_4:61346520-61346539 | None:intergenic | 30.0% | |
| TTCAATTGAGTTCAGAAAGT+TGG | + | chr2_4:61346539-61346558 | None:intergenic | 30.0% | |
| CTTTCTGAACTCAATTGAAA+TGG | - | chr2_4:61346540-61346559 | Msa0340050:three_prime_UTR | 30.0% | |
| ! | TATTATCCAGGTTGAAAACT+AGG | + | chr2_4:61346686-61346705 | None:intergenic | 30.0% |
| ! | TAGTTTTCAACCTGGATAAT+AGG | - | chr2_4:61346685-61346704 | Msa0340050:CDS | 30.0% |
| AAATGGTTTACCTATTATCC+AGG | + | chr2_4:61346698-61346717 | None:intergenic | 30.0% | |
| GAAGAAGAAGATGAAGAAAA+TGG | + | chr2_4:61346715-61346734 | None:intergenic | 30.0% | |
| TACATAACATGGATTTGAGT+GGG | - | chr2_4:61346987-61347006 | Msa0340050:intron | 30.0% | |
| AAATTGATTGCATAACTTGG+AGG | + | chr2_4:61347070-61347089 | None:intergenic | 30.0% | |
| GGTAAATTGATTGCATAACT+TGG | + | chr2_4:61347073-61347092 | None:intergenic | 30.0% | |
| AAAAGACTTGTGATGTTGTA+TGG | - | chr2_4:61347104-61347123 | Msa0340050:intron | 30.0% | |
| GATGCATTAGCAAGAAAATT+AGG | - | chr2_4:61347241-61347260 | Msa0340050:intron | 30.0% | |
| GAATTTCGCCTTAAGTAATT+TGG | - | chr2_4:61347291-61347310 | Msa0340050:intron | 30.0% | |
| AGGTACATTTAGACCAATAT+TGG | - | chr2_4:61347393-61347412 | Msa0340050:intron | 30.0% | |
| !! | ATTTAGACCAATATTGGCTT+TGG | - | chr2_4:61347399-61347418 | Msa0340050:intron | 30.0% |
| TAAAGTTGAGTAAGATAGCA+TGG | + | chr2_4:61347468-61347487 | None:intergenic | 30.0% | |
| TCAACTTTATCTTGAGCTTT+GGG | - | chr2_4:61347479-61347498 | Msa0340050:intron | 30.0% | |
| !!! | TTGGAATATGGTTTTGACAA+GGG | + | chr2_4:61347624-61347643 | None:intergenic | 30.0% |
| !!! | TTTGGAATATGGTTTTGACA+AGG | + | chr2_4:61347625-61347644 | None:intergenic | 30.0% |
| ! | AGACAGAAATGTTTGGAATA+TGG | + | chr2_4:61347636-61347655 | None:intergenic | 30.0% |
| TCGAAATAGACAGAAATGTT+TGG | + | chr2_4:61347643-61347662 | None:intergenic | 30.0% | |
| GAACCAATATCATAGACTTA+AGG | - | chr2_4:61347925-61347944 | Msa0340050:CDS | 30.0% | |
| !!! | AAATGTTTTTTGATAGGCGA+AGG | + | chr2_4:61348037-61348056 | None:intergenic | 30.0% |
| TTCGCCTATCAAAAAACATT+TGG | - | chr2_4:61348036-61348055 | Msa0340050:CDS | 30.0% | |
| !!! | AGCACCAAATGTTTTTTGAT+AGG | + | chr2_4:61348043-61348062 | None:intergenic | 30.0% |
| TTTGCTAATAGCTTATGGAT+AGG | - | chr2_4:61348190-61348209 | Msa0340050:intron | 30.0% | |
| ! | TTAGTGCTATTCATAATGTG+AGG | - | chr2_4:61348236-61348255 | Msa0340050:intron | 30.0% |
| ! | CTTTTGTTAATCTCCTTGTT+TGG | + | chr2_4:61348289-61348308 | None:intergenic | 30.0% |
| AGGAGATTAACAAAAGAAAC+AGG | - | chr2_4:61348293-61348312 | Msa0340050:intron | 30.0% | |
| TTTCAGCTGTTAGTAATTAC+TGG | - | chr2_4:61348369-61348388 | Msa0340050:intron | 30.0% | |
| TTGTGTACTTCTGCTATAAT+AGG | - | chr2_4:61348459-61348478 | Msa0340050:intron | 30.0% | |
| CGAGTAAATAACAAGCTAAT+TGG | - | chr2_4:61348770-61348789 | Msa0340050:intron | 30.0% | |
| TGTATGTTCCTTCACAAATT+TGG | + | chr2_4:61348945-61348964 | None:intergenic | 30.0% | |
| TATGTATACCTGATCAAACT+TGG | - | chr2_4:61349072-61349091 | Msa0340050:intron | 30.0% | |
| TAGCAAAATACAGATTCTCA+TGG | - | chr2_4:61349207-61349226 | Msa0340050:intron | 30.0% | |
| !! | CTTCTAGAATACCTTATCTA+TGG | - | chr2_4:61349232-61349251 | Msa0340050:intron | 30.0% |
| GAAAATTGTGAGTGAAAGTT+TGG | + | chr2_4:61349358-61349377 | None:intergenic | 30.0% | |
| ! | TAGCAAGAGAATTTAAGACA+TGG | + | chr2_4:61349504-61349523 | None:intergenic | 30.0% |
| ! | ATTCTTGGTGTAATATCGAT+AGG | + | chr2_4:61349552-61349571 | None:intergenic | 30.0% |
| CCCTAAAAAAAATCTCAAAC+AGG | - | chr2_4:61349623-61349642 | Msa0340050:intron | 30.0% | |
| ATTAAAAGTCCCATCTCAAT+CGG | - | chr2_4:61349668-61349687 | Msa0340050:intron | 30.0% | |
| GTATAGTTCAGTTCTTTGTT+AGG | - | chr2_4:61349728-61349747 | Msa0340050:intron | 30.0% | |
| AAAAAGGAACAAACAGAACA+TGG | + | chr2_4:61349763-61349782 | None:intergenic | 30.0% | |
| ! | ACAAGTTTGAGGTAGAAAAA+AGG | + | chr2_4:61349779-61349798 | None:intergenic | 30.0% |
| AAATCAACAAGACAAGTTTG+AGG | + | chr2_4:61349790-61349809 | None:intergenic | 30.0% | |
| AAAAATCAGATTTAGATGGC+AGG | - | chr2_4:61350006-61350025 | Msa0340050:intron | 30.0% | |
| GAAAACTTCAAATTGCGAAT+AGG | + | chr2_4:61350086-61350105 | None:intergenic | 30.0% | |
| AGTGGTCATATTAAAACTTC+AGG | - | chr2_4:61350147-61350166 | Msa0340050:intron | 30.0% | |
| CAATTAATGCAAGGATACAA+TGG | + | chr2_4:61350295-61350314 | None:intergenic | 30.0% | |
| AATAAATCAAAATGTGCAGC+TGG | + | chr2_4:61350331-61350350 | None:intergenic | 30.0% | |
| TTAACATACTACATGCTTGC+AGG | - | chr2_4:61346619-61346638 | Msa0340050:exon | 35.0% | |
| CTATTCGCTTTGCTTAAATC+TGG | - | chr2_4:61346647-61346666 | Msa0340050:CDS | 35.0% | |
| TCAAACCAACCTACATAACA+TGG | - | chr2_4:61346976-61346995 | Msa0340050:intron | 35.0% | |
| CAAATCCATGTTATGTAGGT+TGG | + | chr2_4:61346984-61347003 | None:intergenic | 35.0% | |
| CACTCAAATCCATGTTATGT+AGG | + | chr2_4:61346988-61347007 | None:intergenic | 35.0% | |
| CTACATAACATGGATTTGAG+TGG | - | chr2_4:61346986-61347005 | Msa0340050:intron | 35.0% | |
| !! | CAAGTCTTTTTAACTACACG+CGG | + | chr2_4:61347094-61347113 | None:intergenic | 35.0% |
| GTTGTATGGAAGTGAGTATT+AGG | - | chr2_4:61347118-61347137 | Msa0340050:intron | 35.0% | |
| GGACAGGACAAAATAGTATT+AGG | - | chr2_4:61347214-61347233 | Msa0340050:intron | 35.0% | |
| ATTTGGACATGTATGGAGAT+TGG | - | chr2_4:61347308-61347327 | Msa0340050:intron | 35.0% | |
| ATATACGTAGAAGCTTCGAT+AGG | - | chr2_4:61347334-61347353 | Msa0340050:intron | 35.0% | |
| TATACGTAGAAGCTTCGATA+GGG | - | chr2_4:61347335-61347354 | Msa0340050:intron | 35.0% | |
| GAGAATCTCACAATTGTTAG+AGG | - | chr2_4:61347373-61347392 | Msa0340050:intron | 35.0% | |
| GAATGAACCAAAGCCAATAT+TGG | + | chr2_4:61347409-61347428 | None:intergenic | 35.0% | |
| CTCAACTTTATCTTGAGCTT+TGG | - | chr2_4:61347478-61347497 | Msa0340050:intron | 35.0% | |
| TAAAGAGTCATGTCTATCAC+AGG | + | chr2_4:61347736-61347755 | None:intergenic | 35.0% | |
| CATATCGTATTCTTGCCTAT+CGG | - | chr2_4:61347789-61347808 | Msa0340050:CDS | 35.0% | |
| CCACCTTAAGTCTATGATAT+TGG | + | chr2_4:61347931-61347950 | None:intergenic | 35.0% | |
| CCAATATCATAGACTTAAGG+TGG | - | chr2_4:61347928-61347947 | Msa0340050:CDS | 35.0% | |
| ! | TTTTGATAGGCGAAGGTTAA+GGG | + | chr2_4:61348030-61348049 | None:intergenic | 35.0% |
| ! | TTTTTGATAGGCGAAGGTTA+AGG | + | chr2_4:61348031-61348050 | None:intergenic | 35.0% |
| !! | CAAAAAACATTTGGTGCTGT+TGG | - | chr2_4:61348045-61348064 | Msa0340050:CDS | 35.0% |
| !! | CTGTTGGTTCTGTATTATCT+TGG | - | chr2_4:61348061-61348080 | Msa0340050:CDS | 35.0% |
| TAGCTTATGGATAGGATGAT+TGG | - | chr2_4:61348198-61348217 | Msa0340050:intron | 35.0% | |
| ACAGTTCATCAGAAAACGTA+AGG | + | chr2_4:61348416-61348435 | None:intergenic | 35.0% | |
| CTTCTGCTATAATAGGATGA+TGG | - | chr2_4:61348466-61348485 | Msa0340050:intron | 35.0% | |
| GAAGCAAGAGAATTCTACAA+TGG | - | chr2_4:61348695-61348714 | Msa0340050:intron | 35.0% | |
| ! | GATTTTGTCTGCTCAAAAGA+AGG | - | chr2_4:61348797-61348816 | Msa0340050:intron | 35.0% |
| !! | GTCAGTCTCACTTTTAAATC+TGG | + | chr2_4:61349098-61349117 | None:intergenic | 35.0% |
| GAAAAATGTGAGTGAAGGTT+TGG | + | chr2_4:61349261-61349280 | None:intergenic | 35.0% | |
| TTTCCACCTAAGATAGAATG+AGG | - | chr2_4:61349525-61349544 | Msa0340050:intron | 35.0% | |
| TTCCACCTAAGATAGAATGA+GGG | - | chr2_4:61349526-61349545 | Msa0340050:intron | 35.0% | |
| !!! | TTGAGATTTTTTTTAGGGGG+TGG | + | chr2_4:61349621-61349640 | None:intergenic | 35.0% |
| TTACATGCAGATGTTGGATT+AGG | - | chr2_4:61349691-61349710 | Msa0340050:intron | 35.0% | |
| ! | ACGAAAGGCAAAAGTACAAA+AGG | - | chr2_4:61349865-61349884 | Msa0340050:intron | 35.0% |
| CCTCAATCTCTCTGATATTT+CGG | + | chr2_4:61349983-61350002 | None:intergenic | 35.0% | |
| !! | ATCAACATTTGGCTTGAAGT+TGG | - | chr2_4:61350118-61350137 | Msa0340050:intron | 35.0% |
| TCAGGCAGCATATAGTATAT+TGG | - | chr2_4:61350165-61350184 | Msa0340050:intron | 35.0% | |
| CAGGCAGCATATAGTATATT+GGG | - | chr2_4:61350166-61350185 | Msa0340050:intron | 35.0% | |
| ! | TTTCTGGTGTGTATCATGTT+CGG | - | chr2_4:61350197-61350216 | Msa0340050:five_prime_UTR | 35.0% |
| ! | ATGGATATGGTTAGTCACAA+GGG | + | chr2_4:61350276-61350295 | None:intergenic | 35.0% |
| ! | AATGGATATGGTTAGTCACA+AGG | + | chr2_4:61350277-61350296 | None:intergenic | 35.0% |
| ATGCAAGGATACAATGGATA+TGG | + | chr2_4:61350289-61350308 | None:intergenic | 35.0% | |
| AGGTGAAGGGAATAAGAGAA+GGG | + | chr2_4:61346377-61346396 | None:intergenic | 40.0% | |
| AAGGTGAAGGGAATAAGAGA+AGG | + | chr2_4:61346378-61346397 | None:intergenic | 40.0% | |
| AAGATCAAGTGTAGAAGCTC+CGG | + | chr2_4:61346444-61346463 | None:intergenic | 40.0% | |
| !! | TCTTCTCCTAGTTTTCAACC+TGG | - | chr2_4:61346677-61346696 | Msa0340050:CDS | 40.0% |
| !! | ATGTAGGTTGGTTTGAGCTA+GGG | + | chr2_4:61346972-61346991 | None:intergenic | 40.0% |
| !! | TATGTAGGTTGGTTTGAGCT+AGG | + | chr2_4:61346973-61346992 | None:intergenic | 40.0% |
| ATAACATGGATTTGAGTGGG+TGG | - | chr2_4:61346990-61347009 | Msa0340050:intron | 40.0% | |
| !! | TAGGCTGCAAAGAGTTGATA+TGG | - | chr2_4:61347137-61347156 | Msa0340050:intron | 40.0% |
| ACAATGAGTCATTGAAAGCG+CGG | - | chr2_4:61347193-61347212 | Msa0340050:intron | 40.0% | |
| !! | GTTGAGCTTCTGAGTTTTGA+TGG | + | chr2_4:61347568-61347587 | None:intergenic | 40.0% |
| GTGGTCAGAAAAAGTCAAAG+GGG | + | chr2_4:61347679-61347698 | None:intergenic | 40.0% | |
| CGTGGTCAGAAAAAGTCAAA+GGG | + | chr2_4:61347680-61347699 | None:intergenic | 40.0% | |
| GAAGGAGTTAATTGACCGAT+AGG | + | chr2_4:61347807-61347826 | None:intergenic | 40.0% | |
| TTATCTAGAAGCTGTGGTGA+AGG | + | chr2_4:61347825-61347844 | None:intergenic | 40.0% | |
| CACTCTCCAACAATGGTATT+CGG | - | chr2_4:61347896-61347915 | Msa0340050:CDS | 40.0% | |
| GGATGCACTAGTCAATCAAT+TGG | - | chr2_4:61348003-61348022 | Msa0340050:CDS | 40.0% | |
| ! | CGTTTTCTGATGAACTGTGA+AGG | - | chr2_4:61348418-61348437 | Msa0340050:intron | 40.0% |
| TACCATCTGAATCAAATCCC+TGG | + | chr2_4:61348505-61348524 | None:intergenic | 40.0% | |
| GACACATTCGAACCATTCAT+AGG | - | chr2_4:61348650-61348669 | Msa0340050:intron | 40.0% | |
| TTGAACTGCATGCCTATGAA+TGG | + | chr2_4:61348665-61348684 | None:intergenic | 40.0% | |
| AGAGAATTCTACAATGGCCA+TGG | - | chr2_4:61348701-61348720 | Msa0340050:intron | 40.0% | |
| AATTCTACAATGGCCATGGT+AGG | - | chr2_4:61348705-61348724 | Msa0340050:intron | 40.0% | |
| TAAATCCTATCCTCCTACCA+TGG | + | chr2_4:61348721-61348740 | None:intergenic | 40.0% | |
| GGAGGATAGGATTTACAGTA+CGG | - | chr2_4:61348726-61348745 | Msa0340050:intron | 40.0% | |
| !! | GCTTGTTATTTACTCGCGAA+CGG | + | chr2_4:61348766-61348785 | None:intergenic | 40.0% |
| AAGGTTGTCAAGCCATGATA+AGG | - | chr2_4:61348885-61348904 | Msa0340050:intron | 40.0% | |
| TTGTCAAGCCATGATAAGGT+TGG | - | chr2_4:61348889-61348908 | Msa0340050:intron | 40.0% | |
| !! | CCATGATAAGGTTGGCTTTA+CGG | - | chr2_4:61348897-61348916 | Msa0340050:intron | 40.0% |
| !! | CATGATAAGGTTGGCTTTAC+GGG | - | chr2_4:61348898-61348917 | Msa0340050:intron | 40.0% |
| GGTTGTCACCAAATTTGTGA+AGG | - | chr2_4:61348934-61348953 | Msa0340050:intron | 40.0% | |
| AAATCTGGCCAAGTTTGATC+AGG | + | chr2_4:61349083-61349102 | None:intergenic | 40.0% | |
| GTCAATCTAATATCAGCAGC+AGG | + | chr2_4:61349141-61349160 | None:intergenic | 40.0% | |
| AGATTGACAACAGTATCAGC+AGG | - | chr2_4:61349153-61349172 | Msa0340050:intron | 40.0% | |
| ! | AGGTTTGGAACCCATAGATA+AGG | + | chr2_4:61349246-61349265 | None:intergenic | 40.0% |
| ! | TTCGAGTTCATCATGTAGAG+CGG | + | chr2_4:61349284-61349303 | None:intergenic | 40.0% |
| TCAGTGAGGGACTTAGAAAA+GGG | + | chr2_4:61349400-61349419 | None:intergenic | 40.0% | |
| ATCAGTGAGGGACTTAGAAA+AGG | + | chr2_4:61349401-61349420 | None:intergenic | 40.0% | |
| ! | GGATTTTGTTGGATCAGTGA+GGG | + | chr2_4:61349413-61349432 | None:intergenic | 40.0% |
| TGATGCAAATGGAAGGGAAA+GGG | + | chr2_4:61349434-61349453 | None:intergenic | 40.0% | |
| ATAGGCCCTCATTCTATCTT+AGG | + | chr2_4:61349534-61349553 | None:intergenic | 40.0% | |
| !!! | AGATTTTTTTTAGGGGGTGG+AGG | + | chr2_4:61349618-61349637 | None:intergenic | 40.0% |
| TGCATGTAACCGATTGAGAT+GGG | + | chr2_4:61349680-61349699 | None:intergenic | 40.0% | |
| AATCGGTTACATGCAGATGT+TGG | - | chr2_4:61349685-61349704 | Msa0340050:intron | 40.0% | |
| !! | GTCTTGTTGATTTGTGTCAC+AGG | - | chr2_4:61349797-61349816 | Msa0340050:intron | 40.0% |
| CCGAAATATCAGAGAGATTG+AGG | - | chr2_4:61349980-61349999 | Msa0340050:five_prime_UTR | 40.0% | |
| CTGGCAACAATGGAATATAC+TGG | + | chr2_4:61350041-61350060 | None:intergenic | 40.0% | |
| AAGTATCTCACCAGAATGTC+TGG | + | chr2_4:61350060-61350079 | None:intergenic | 40.0% | |
| AGACATTCTGGTGAGATACT+TGG | - | chr2_4:61350059-61350078 | Msa0340050:intron | 40.0% | |
| TTCTGGTGTGTATCATGTTC+GGG | - | chr2_4:61350198-61350217 | Msa0340050:five_prime_UTR | 40.0% | |
| TTCAACAAGAGCAGCATGTT+AGG | + | chr2_4:61350245-61350264 | None:intergenic | 40.0% | |
| TGTTGCTGGGTTTCTCTACT+TGG | - | chr2_4:61346308-61346327 | Msa0340050:three_prime_UTR | 45.0% | |
| CTGGGTTTCTCTACTTGGTA+TGG | - | chr2_4:61346313-61346332 | Msa0340050:three_prime_UTR | 45.0% | |
| GGTATGGAGTAGTTCTTCCA+TGG | - | chr2_4:61346329-61346348 | Msa0340050:three_prime_UTR | 45.0% | |
| GGAATAAGAGAAGGGTTCCT+CGG | + | chr2_4:61346369-61346388 | None:intergenic | 45.0% | |
| ACCGTTTGTGCAACTGAATG+GGG | + | chr2_4:61346419-61346438 | None:intergenic | 45.0% | |
| GACCGTTTGTGCAACTGAAT+GGG | + | chr2_4:61346420-61346439 | None:intergenic | 45.0% | |
| TGACCGTTTGTGCAACTGAA+TGG | + | chr2_4:61346421-61346440 | None:intergenic | 45.0% | |
| CACGACGCTCATTGTTGAAA+TGG | - | chr2_4:61346565-61346584 | Msa0340050:three_prime_UTR | 45.0% | |
| TTTCGTCCAAGTTTGAGCTG+AGG | - | chr2_4:61346929-61346948 | Msa0340050:intron | 45.0% | |
| ! | TTGGTTTGAGCTAGGGGATA+AGG | + | chr2_4:61346965-61346984 | None:intergenic | 45.0% |
| !! | TGTAGGTTGGTTTGAGCTAG+GGG | + | chr2_4:61346971-61346990 | None:intergenic | 45.0% |
| ATTTGAGTGGGTGGATAGAG+TGG | - | chr2_4:61346999-61347018 | Msa0340050:intron | 45.0% | |
| TGATTGCATAACTTGGAGGC+TGG | + | chr2_4:61347066-61347085 | None:intergenic | 45.0% | |
| GATAGGGAGGGTAGATCAAA+TGG | - | chr2_4:61347351-61347370 | Msa0340050:intron | 45.0% | |
| GTGACACGTTGAACCAATGA+GGG | - | chr2_4:61347440-61347459 | Msa0340050:intron | 45.0% | |
| !! | GCTTTGAGGTGTAGGAGAAA+TGG | + | chr2_4:61347512-61347531 | None:intergenic | 45.0% |
| !! | AATCAGAGGCTTTGAGGTGT+AGG | + | chr2_4:61347520-61347539 | None:intergenic | 45.0% |
| ACACCTCAAAGCCTCTGATT+AGG | - | chr2_4:61347520-61347539 | Msa0340050:intron | 45.0% | |
| TCTCCTAATCAGAGGCTTTG+AGG | + | chr2_4:61347526-61347545 | None:intergenic | 45.0% | |
| GTGTTGGATCTCCTAATCAG+AGG | + | chr2_4:61347534-61347553 | None:intergenic | 45.0% | |
| GATTAGGAGATCCAACACCT+AGG | - | chr2_4:61347536-61347555 | Msa0340050:intron | 45.0% | |
| !! | AGTTTTGATGGCACTCACCT+AGG | + | chr2_4:61347556-61347575 | None:intergenic | 45.0% |
| TTACTATCCGATTCCGCTAG+CGG | + | chr2_4:61347599-61347618 | None:intergenic | 45.0% | |
| GCGTGGTCAGAAAAAGTCAA+AGG | + | chr2_4:61347681-61347700 | None:intergenic | 45.0% | |
| !! | ACTTTTTCTGACCACGCGAA+TGG | - | chr2_4:61347684-61347703 | Msa0340050:CDS | 45.0% |
| ! | CTTTTTCTGACCACGCGAAT+GGG | - | chr2_4:61347685-61347704 | Msa0340050:CDS | 45.0% |
| ! | TTTTTCTGACCACGCGAATG+GGG | - | chr2_4:61347686-61347705 | Msa0340050:CDS | 45.0% |
| AGAGTCATGTCTATCACAGG+TGG | + | chr2_4:61347733-61347752 | None:intergenic | 45.0% | |
| CGTGTCTTATCTAGAAGCTG+TGG | + | chr2_4:61347831-61347850 | None:intergenic | 45.0% | |
| AGCTGTCAGAAACACTGTCA+TGG | + | chr2_4:61347861-61347880 | None:intergenic | 45.0% | |
| AACGTGCCGAATACCATTGT+TGG | + | chr2_4:61347905-61347924 | None:intergenic | 45.0% | |
| !! | AGGATGATGGATCACCAATC+TGG | - | chr2_4:61348479-61348498 | Msa0340050:intron | 45.0% |
| AATCAAATCCCTGGCCAGAT+TGG | + | chr2_4:61348496-61348515 | None:intergenic | 45.0% | |
| CGAACAACCTGTAGCAGATT+CGG | - | chr2_4:61348628-61348647 | Msa0340050:intron | 45.0% | |
| AATGTGTCCGAATCTGCTAC+AGG | + | chr2_4:61348638-61348657 | None:intergenic | 45.0% | |
| TAGGCATGCAGTTCAACTCA+AGG | - | chr2_4:61348669-61348688 | Msa0340050:intron | 45.0% | |
| AGGCATGCAGTTCAACTCAA+GGG | - | chr2_4:61348670-61348689 | Msa0340050:intron | 45.0% | |
| ! | TGTTATTTACTCGCGAACGG+CGG | + | chr2_4:61348763-61348782 | None:intergenic | 45.0% |
| TCATGGCTTGACAACCTTCT+CGG | + | chr2_4:61348883-61348902 | None:intergenic | 45.0% | |
| CCGTAAAGCCAACCTTATCA+TGG | + | chr2_4:61348900-61348919 | None:intergenic | 45.0% | |
| TTTACGGGATGAAGGGAAGT+GGG | - | chr2_4:61348913-61348932 | Msa0340050:intron | 45.0% | |
| AATATCAGCAGCAGGAGAAG+AGG | + | chr2_4:61349133-61349152 | None:intergenic | 45.0% | |
| AGCGGGAAAAATGTGAGTGA+AGG | + | chr2_4:61349266-61349285 | None:intergenic | 45.0% | |
| TCGAGTTCATCATGTAGAGC+GGG | + | chr2_4:61349283-61349302 | None:intergenic | 45.0% | |
| ! | AAAAGGGTGTGTGGAAAGTG+AGG | + | chr2_4:61349384-61349403 | None:intergenic | 45.0% |
| ! | GGGATTTTGTTGGATCAGTG+AGG | + | chr2_4:61349414-61349433 | None:intergenic | 45.0% |
| ! | GGAAGGGAAAGGGATTTTGT+TGG | + | chr2_4:61349424-61349443 | None:intergenic | 45.0% |
| GTGATGCAAATGGAAGGGAA+AGG | + | chr2_4:61349435-61349454 | None:intergenic | 45.0% | |
| ACGACGTGATGCAAATGGAA+GGG | + | chr2_4:61349440-61349459 | None:intergenic | 45.0% | |
| AACGACGTGATGCAAATGGA+AGG | + | chr2_4:61349441-61349460 | None:intergenic | 45.0% | |
| TCCATTTGCATCACGTCGTT+AGG | - | chr2_4:61349441-61349460 | Msa0340050:intron | 45.0% | |
| TCCTAACGACGTGATGCAAA+TGG | + | chr2_4:61349445-61349464 | None:intergenic | 45.0% | |
| ATGGCAGCATGAGACACATT+GGG | + | chr2_4:61349485-61349504 | None:intergenic | 45.0% | |
| ! | AGGACTAGAGGTAGCTTTTC+AGG | + | chr2_4:61349598-61349617 | None:intergenic | 45.0% |
| CTGCATGTAACCGATTGAGA+TGG | + | chr2_4:61349681-61349700 | None:intergenic | 45.0% | |
| TGTCACAGGACGAGAAAGAT+AGG | - | chr2_4:61349811-61349830 | Msa0340050:intron | 45.0% | |
| TCCATTGTTGCCAGACATTC+TGG | - | chr2_4:61350047-61350066 | Msa0340050:intron | 45.0% | |
| ACCAGAATGTCTGGCAACAA+TGG | + | chr2_4:61350051-61350070 | None:intergenic | 45.0% | |
| ! | GCTTGAAGTTGGTTGTGTAG+TGG | - | chr2_4:61350129-61350148 | Msa0340050:intron | 45.0% |
| CCGTTTGTGCAACTGAATGG+GGG | + | chr2_4:61346418-61346437 | None:intergenic | 50.0% | |
| CCCCCATTCAGTTGCACAAA+CGG | - | chr2_4:61346415-61346434 | Msa0340050:three_prime_UTR | 50.0% | |
| TCAGTTGCACAAACGGTCAC+CGG | - | chr2_4:61346422-61346441 | Msa0340050:three_prime_UTR | 50.0% | |
| TGAGCTAGGGGATAAGGAGT+TGG | + | chr2_4:61346959-61346978 | None:intergenic | 50.0% | |
| ACGTAGAAGCTTCGATAGGG+AGG | - | chr2_4:61347338-61347357 | Msa0340050:intron | 50.0% | |
| CGTAGAAGCTTCGATAGGGA+GGG | - | chr2_4:61347339-61347358 | Msa0340050:intron | 50.0% | |
| CGTGACACGTTGAACCAATG+AGG | - | chr2_4:61347439-61347458 | Msa0340050:intron | 50.0% | |
| AGATAGCATGGAGCCCTCAT+TGG | + | chr2_4:61347456-61347475 | None:intergenic | 50.0% | |
| TTTCTGACAGCTCCGCACTT+AGG | - | chr2_4:61347869-61347888 | Msa0340050:CDS | 50.0% | |
| AGGCAGACACTCTCCAACAA+TGG | - | chr2_4:61347889-61347908 | Msa0340050:CDS | 50.0% | |
| ATGGATCACCAATCTGGCCA+GGG | - | chr2_4:61348485-61348504 | Msa0340050:intron | 50.0% | |
| GGCCAGGGATTTGATTCAGA+TGG | - | chr2_4:61348500-61348519 | Msa0340050:intron | 50.0% | |
| CATGCAGTTCAACTCAAGGG+AGG | - | chr2_4:61348673-61348692 | Msa0340050:intron | 50.0% | |
| TCTACAATGGCCATGGTAGG+AGG | - | chr2_4:61348708-61348727 | Msa0340050:intron | 50.0% | |
| AATGGCCATGGTAGGAGGAT+AGG | - | chr2_4:61348713-61348732 | Msa0340050:intron | 50.0% | |
| CATGGCTTGACAACCTTCTC+GGG | + | chr2_4:61348882-61348901 | None:intergenic | 50.0% | |
| !! | AGGTTGGCTTTACGGGATGA+AGG | - | chr2_4:61348905-61348924 | Msa0340050:intron | 50.0% |
| !! | GGTTGGCTTTACGGGATGAA+GGG | - | chr2_4:61348906-61348925 | Msa0340050:intron | 50.0% |
| CTTTACGGGATGAAGGGAAG+TGG | - | chr2_4:61348912-61348931 | Msa0340050:intron | 50.0% | |
| TGAGTCCCAGTGAAGTTCCA+TGG | - | chr2_4:61348975-61348994 | Msa0340050:intron | 50.0% | |
| CTCACTAACCAAGTGCTTCC+CGG | + | chr2_4:61349008-61349027 | None:intergenic | 50.0% | |
| ! | GGGACTTAGAAAAGGGTGTG+TGG | + | chr2_4:61349393-61349412 | None:intergenic | 50.0% |
| CATGGCAGCATGAGACACAT+TGG | + | chr2_4:61349486-61349505 | None:intergenic | 50.0% | |
| GGCCCTCATTCTATCTTAGG+TGG | + | chr2_4:61349531-61349550 | None:intergenic | 50.0% | |
| CGGAGTCACTGCACTAACCA+TGG | + | chr2_4:61346349-61346368 | None:intergenic | 55.0% | |
| TGGTTAGTGCAGTGACTCCG+AGG | - | chr2_4:61346349-61346368 | Msa0340050:three_prime_UTR | 55.0% | |
| GGAGGTCCTCAGCTCAAACT+TGG | + | chr2_4:61346938-61346957 | None:intergenic | 55.0% | |
| GCTAGGGGATAAGGAGTTGG+AGG | + | chr2_4:61346956-61346975 | None:intergenic | 55.0% | |
| ! | GAGTCATTGAAAGCGCGGAC+AGG | - | chr2_4:61347198-61347217 | Msa0340050:intron | 55.0% |
| GATGGCACTCACCTAGGTGT+TGG | + | chr2_4:61347550-61347569 | None:intergenic | 55.0% | |
| !! | GGAGAGTGTCTGCCTAAGTG+CGG | + | chr2_4:61347884-61347903 | None:intergenic | 55.0% |
| GATGGATCACCAATCTGGCC+AGG | - | chr2_4:61348484-61348503 | Msa0340050:intron | 55.0% | |
| TTACTCGCGAACGGCGGTTA+TGG | + | chr2_4:61348757-61348776 | None:intergenic | 55.0% | |
| CCTCGCCATGGAACTTCACT+GGG | + | chr2_4:61348983-61349002 | None:intergenic | 55.0% | |
| TCCTCGCCATGGAACTTCAC+TGG | + | chr2_4:61348984-61349003 | None:intergenic | 55.0% | |
| GAAGTTCCATGGCGAGGATC+CGG | - | chr2_4:61348986-61349005 | Msa0340050:intron | 55.0% | |
| AAGTTCCATGGCGAGGATCC+GGG | - | chr2_4:61348987-61349006 | Msa0340050:intron | 55.0% | |
| !! | CGGGAAGCACTTGGTTAGTG+AGG | - | chr2_4:61349006-61349025 | Msa0340050:intron | 55.0% |
| TTTAGGGGGTGGAGGACTAG+AGG | + | chr2_4:61349610-61349629 | None:intergenic | 55.0% | |
| GCAACTCGAGCGATAGCTCA+CGG | + | chr2_4:61349842-61349861 | None:intergenic | 55.0% | |
| ! | CGCTCGAGTTGCACAACGAA+AGG | - | chr2_4:61349850-61349869 | Msa0340050:intron | 55.0% |
| TCAACCTGCTCCACCGCTAG+CGG | - | chr2_4:61347583-61347602 | Msa0340050:intron | 60.0% | |
| TGCTCCACCGCTAGCGGAAT+CGG | - | chr2_4:61347589-61347608 | Msa0340050:intron | 60.0% | |
| CTATCCGATTCCGCTAGCGG+TGG | + | chr2_4:61347596-61347615 | None:intergenic | 60.0% | |
| TTCTGACCACGCGAATGGGG+TGG | - | chr2_4:61347689-61347708 | Msa0340050:CDS | 60.0% | |
| TGACAACCTTCTCGGGTGGC+TGG | + | chr2_4:61348875-61348894 | None:intergenic | 60.0% | |
| GGCTTGACAACCTTCTCGGG+TGG | + | chr2_4:61348879-61348898 | None:intergenic | 60.0% | |
| CCCAGTGAAGTTCCATGGCG+AGG | - | chr2_4:61348980-61348999 | Msa0340050:intron | 60.0% | |
| GGGTGTGTGGAAAGTGAGGC+TGG | + | chr2_4:61349380-61349399 | None:intergenic | 60.0% | |
| GATTCCGCTAGCGGTGGAGC+AGG | + | chr2_4:61347590-61347609 | None:intergenic | 65.0% | |
| CACAGTCCACCCCATTCGCG+TGG | + | chr2_4:61347698-61347717 | None:intergenic | 65.0% | |
| !! | CACGCGAATGGGGTGGACTG+TGG | - | chr2_4:61347696-61347715 | Msa0340050:CDS | 65.0% |
| CAACCTTCTCGGGTGGCTGG+TGG | + | chr2_4:61348872-61348891 | None:intergenic | 65.0% | |
| TGCTTCCCGGATCCTCGCCA+TGG | + | chr2_4:61348995-61349014 | None:intergenic | 65.0% | |
| !! | GCGAGGATCCGGGAAGCACT+TGG | - | chr2_4:61348997-61349016 | Msa0340050:intron | 65.0% |
| CTCGGGTGGCTGGTGGAGGA+GGG | + | chr2_4:61348865-61348884 | None:intergenic | 70.0% | |
| TCTCGGGTGGCTGGTGGAGG+AGG | + | chr2_4:61348866-61348885 | None:intergenic | 70.0% | |
| CCTTCTCGGGTGGCTGGTGG+AGG | + | chr2_4:61348869-61348888 | None:intergenic | 70.0% | |
| CCTCCACCAGCCACCCGAGA+AGG | - | chr2_4:61348866-61348885 | Msa0340050:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 61346300 | 61350355 | 61346300 | ID=Msa0340050;Name=Msa0340050 |
| chr2_4 | mRNA | 61346300 | 61350355 | 61346300 | ID=Msa0340050-mRNA-1;Parent=Msa0340050;Name=Msa0340050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=237|1|1|1|0.33|0.25|4|324|252 |
| chr2_4 | exon | 61346300 | 61346836 | 61346300 | ID=Msa0340050-mRNA-1:exon:19238;Parent=Msa0340050-mRNA-1 |
| chr2_4 | exon | 61347628 | 61348174 | 61347628 | ID=Msa0340050-mRNA-1:exon:19237;Parent=Msa0340050-mRNA-1 |
| chr2_4 | exon | 61349949 | 61350014 | 61349949 | ID=Msa0340050-mRNA-1:exon:19236;Parent=Msa0340050-mRNA-1 |
| chr2_4 | exon | 61350186 | 61350355 | 61350186 | ID=Msa0340050-mRNA-1:exon:19235;Parent=Msa0340050-mRNA-1 |
| chr2_4 | five_prime_UTR | 61350186 | 61350355 | 61350186 | ID=Msa0340050-mRNA-1:five_prime_utr;Parent=Msa0340050-mRNA-1 |
| chr2_4 | five_prime_UTR | 61349949 | 61350014 | 61349949 | ID=Msa0340050-mRNA-1:five_prime_utr;Parent=Msa0340050-mRNA-1 |
| chr2_4 | five_prime_UTR | 61348174 | 61348174 | 61348174 | ID=Msa0340050-mRNA-1:five_prime_utr;Parent=Msa0340050-mRNA-1 |
| chr2_4 | CDS | 61347628 | 61348173 | 61347628 | ID=Msa0340050-mRNA-1:cds;Parent=Msa0340050-mRNA-1 |
| chr2_4 | CDS | 61346624 | 61346836 | 61346624 | ID=Msa0340050-mRNA-1:cds;Parent=Msa0340050-mRNA-1 |
| chr2_4 | three_prime_UTR | 61346300 | 61346623 | 61346300 | ID=Msa0340050-mRNA-1:three_prime_utr;Parent=Msa0340050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
