Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340840 | XP_003597853.1 | 88.462 | 182 | 19 | 2 | 1 | 181 | 1 | 181 | 9.48e-107 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0340840 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340840 | MtrunA17_Chr2g0332631 | 86.000 | 100 | 12 | 2 | 1 | 99 | 1 | 99 | 5.00e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAGTCTTAATCCTCATA+TGG | 0.366307 | 2_4:-62247066 | None:intergenic |
| TCTGCTGCTGCTACAACTAA+TGG | 0.397952 | 2_4:+62248464 | Msa0340840:CDS |
| GCCATGTGCATAGTTGCATT+GGG | 0.419796 | 2_4:-62247131 | None:intergenic |
| TGAACATAATGAAGAGGTAG+AGG | 0.427658 | 2_4:-62247259 | None:intergenic |
| AACGACCTCAGAACAGCAAC+AGG | 0.451715 | 2_4:+62247157 | Msa0340840:CDS |
| AAAATTCACAAACCCATATG+AGG | 0.470113 | 2_4:+62247053 | Msa0340840:CDS |
| TCATTCGTCTCTATGCTGAT+TGG | 0.477473 | 2_4:+62248642 | Msa0340840:CDS |
| ACTACCTCTTTACATAAGAA+TGG | 0.478765 | 2_4:+62248572 | Msa0340840:CDS |
| ATGAACATTCTACAGAATCT+TGG | 0.480970 | 2_4:-62247181 | None:intergenic |
| AGCCATGTGCATAGTTGCAT+TGG | 0.488645 | 2_4:-62247132 | None:intergenic |
| CTGAGTCTTAATCCTCATAT+GGG | 0.496970 | 2_4:-62247065 | None:intergenic |
| CATAAGAATGGACCGTATGC+TGG | 0.500563 | 2_4:+62248584 | Msa0340840:CDS |
| CGGTCCATTCTTATGTAAAG+AGG | 0.523765 | 2_4:-62248576 | None:intergenic |
| ACATAATGAAGAGGTAGAGG+AGG | 0.543147 | 2_4:-62247256 | None:intergenic |
| GTAGAGGAGGAGTTGCATGA+AGG | 0.548027 | 2_4:-62247243 | None:intergenic |
| TGATACAAAATGCAGAATGC+AGG | 0.549025 | 2_4:+62248429 | Msa0340840:CDS |
| TTGGTCCTGTTGCTGTTCTG+AGG | 0.555812 | 2_4:-62247162 | None:intergenic |
| ATGGCTGAGGTATTTGTAGC+AGG | 0.556435 | 2_4:-62248539 | None:intergenic |
| CCCCAATGCAACTATGCACA+TGG | 0.558064 | 2_4:+62247130 | Msa0340840:CDS |
| GTGTCCGTAGCTACAATGTC+TGG | 0.558270 | 2_4:-62247209 | None:intergenic |
| AGAGGTAGTTGCCGCTGTGA+TGG | 0.562973 | 2_4:-62248558 | None:intergenic |
| CACACCAGACATTGTAGCTA+CGG | 0.572650 | 2_4:+62247205 | Msa0340840:CDS |
| TTGCATTGGGGTGCAACAAG+AGG | 0.590171 | 2_4:-62247118 | None:intergenic |
| GATAGGGATTTACCAGCATA+CGG | 0.594337 | 2_4:-62248596 | None:intergenic |
| AGTTGCCGCTGTGATGGCTG+AGG | 0.641938 | 2_4:-62248552 | None:intergenic |
| TGAGGATGAACATAATGAAG+AGG | 0.648497 | 2_4:-62247265 | None:intergenic |
| CCATGTGCATAGTTGCATTG+GGG | 0.656451 | 2_4:-62247130 | None:intergenic |
| CTATGCAAAAGATTCATGCA+AGG | 0.677580 | 2_4:+62247088 | Msa0340840:CDS |
| AGTTTGTGAATGCAGAACCA+GGG | 0.757579 | 2_4:+62248405 | Msa0340840:intron |
| AAATACCTCAGCCATCACAG+CGG | 0.800744 | 2_4:+62248547 | Msa0340840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAAACATTATTACT+TGG | + | chr2_4:62247625-62247644 | Msa0340840:intron | 10.0% |
| !!! | TTTTTTTAAACATTATTACT+TGG | + | chr2_4:62247625-62247644 | Msa0340840:intron | 10.0% |
| !! | TTAATTAATAAGTAATGTCT+CGG | + | chr2_4:62247780-62247799 | Msa0340840:intron | 15.0% |
| !! | AATAAGCTAAAAACAATTTA+TGG | - | chr2_4:62248131-62248150 | None:intergenic | 15.0% |
| !! | TTAATTAATAAGTAATGTCT+CGG | + | chr2_4:62247780-62247799 | Msa0340840:intron | 15.0% |
| !! | AATAAGCTAAAAACAATTTA+TGG | - | chr2_4:62248131-62248150 | None:intergenic | 15.0% |
| !! | TTCTTAGTATTAGAACAAAA+AGG | + | chr2_4:62247395-62247414 | Msa0340840:intron | 20.0% |
| !! | TCTTAGTATTAGAACAAAAA+GGG | + | chr2_4:62247396-62247415 | Msa0340840:intron | 20.0% |
| !!! | TTTATAGGTTTTATGTAATC+TGG | + | chr2_4:62247541-62247560 | Msa0340840:intron | 20.0% |
| !! | ACATAAACACTTATATGATA+TGG | + | chr2_4:62248246-62248265 | Msa0340840:intron | 20.0% |
| !! | TTCTTAGTATTAGAACAAAA+AGG | + | chr2_4:62247395-62247414 | Msa0340840:intron | 20.0% |
| !! | TCTTAGTATTAGAACAAAAA+GGG | + | chr2_4:62247396-62247415 | Msa0340840:intron | 20.0% |
| !!! | TTTATAGGTTTTATGTAATC+TGG | + | chr2_4:62247541-62247560 | Msa0340840:intron | 20.0% |
| !! | ACATAAACACTTATATGATA+TGG | + | chr2_4:62248246-62248265 | Msa0340840:intron | 20.0% |
| ! | AAACAACAAACACATAATGT+TGG | + | chr2_4:62247733-62247752 | Msa0340840:intron | 25.0% |
| ! | TAATTAAGCAACCTCATAAT+CGG | - | chr2_4:62247767-62247786 | None:intergenic | 25.0% |
| ! | TAAATGGAAAAAATGTGCAT+CGG | + | chr2_4:62247815-62247834 | Msa0340840:intron | 25.0% |
| ! | AGTAGAAAATTGTCAAATAG+CGG | - | chr2_4:62248021-62248040 | None:intergenic | 25.0% |
| !! | CAATTTTCTACTAAATATCG+TGG | + | chr2_4:62248029-62248048 | Msa0340840:intron | 25.0% |
| ! | AATAGAATATAGAACTGTGT+TGG | + | chr2_4:62248360-62248379 | Msa0340840:intron | 25.0% |
| ! | AAACAACAAACACATAATGT+TGG | + | chr2_4:62247733-62247752 | Msa0340840:intron | 25.0% |
| ! | TAATTAAGCAACCTCATAAT+CGG | - | chr2_4:62247767-62247786 | None:intergenic | 25.0% |
| ! | TAAATGGAAAAAATGTGCAT+CGG | + | chr2_4:62247815-62247834 | Msa0340840:intron | 25.0% |
| ! | AGTAGAAAATTGTCAAATAG+CGG | - | chr2_4:62248021-62248040 | None:intergenic | 25.0% |
| !! | CAATTTTCTACTAAATATCG+TGG | + | chr2_4:62248029-62248048 | Msa0340840:intron | 25.0% |
| ! | AATAGAATATAGAACTGTGT+TGG | + | chr2_4:62248360-62248379 | Msa0340840:intron | 25.0% |
| AAAATTCACAAACCCATATG+AGG | + | chr2_4:62247053-62247072 | Msa0340840:CDS | 30.0% | |
| ATGAACATTCTACAGAATCT+TGG | - | chr2_4:62247184-62247203 | None:intergenic | 30.0% | |
| AGAAGTTGAAGAAAAATACG+TGG | - | chr2_4:62247331-62247350 | None:intergenic | 30.0% | |
| !! | ACTACACTAACACTACTTTT+TGG | + | chr2_4:62247358-62247377 | Msa0340840:intron | 30.0% |
| ! | ACACTTTTGATCAAATGTGT+CGG | - | chr2_4:62247439-62247458 | None:intergenic | 30.0% |
| ! | GACTTCAGTTTATCTTTTGT+TGG | + | chr2_4:62248210-62248229 | Msa0340840:intron | 30.0% |
| AGCTTTCATGGAAATCATAT+TGG | - | chr2_4:62248329-62248348 | None:intergenic | 30.0% | |
| TGAATCACAAAAAGCTTTCA+TGG | - | chr2_4:62248341-62248360 | None:intergenic | 30.0% | |
| ACTACCTCTTTACATAAGAA+TGG | + | chr2_4:62248572-62248591 | Msa0340840:CDS | 30.0% | |
| !! | CATTGTGTTTTTGTCAGATA+GGG | - | chr2_4:62248615-62248634 | None:intergenic | 30.0% |
| TGACAAAAACACAATGCAAA+GGG | + | chr2_4:62248619-62248638 | Msa0340840:CDS | 30.0% | |
| AAAATTCACAAACCCATATG+AGG | + | chr2_4:62247053-62247072 | Msa0340840:CDS | 30.0% | |
| ATGAACATTCTACAGAATCT+TGG | - | chr2_4:62247184-62247203 | None:intergenic | 30.0% | |
| AGAAGTTGAAGAAAAATACG+TGG | - | chr2_4:62247331-62247350 | None:intergenic | 30.0% | |
| !! | ACTACACTAACACTACTTTT+TGG | + | chr2_4:62247358-62247377 | Msa0340840:intron | 30.0% |
| ! | ACACTTTTGATCAAATGTGT+CGG | - | chr2_4:62247439-62247458 | None:intergenic | 30.0% |
| ! | GACTTCAGTTTATCTTTTGT+TGG | + | chr2_4:62248210-62248229 | Msa0340840:intron | 30.0% |
| AGCTTTCATGGAAATCATAT+TGG | - | chr2_4:62248329-62248348 | None:intergenic | 30.0% | |
| TGAATCACAAAAAGCTTTCA+TGG | - | chr2_4:62248341-62248360 | None:intergenic | 30.0% | |
| ACTACCTCTTTACATAAGAA+TGG | + | chr2_4:62248572-62248591 | Msa0340840:CDS | 30.0% | |
| !! | CATTGTGTTTTTGTCAGATA+GGG | - | chr2_4:62248615-62248634 | None:intergenic | 30.0% |
| TGACAAAAACACAATGCAAA+GGG | + | chr2_4:62248619-62248638 | Msa0340840:CDS | 30.0% | |
| CTGAGTCTTAATCCTCATAT+GGG | - | chr2_4:62247068-62247087 | None:intergenic | 35.0% | |
| CTATGCAAAAGATTCATGCA+AGG | + | chr2_4:62247088-62247107 | Msa0340840:CDS | 35.0% | |
| TGAACATAATGAAGAGGTAG+AGG | - | chr2_4:62247262-62247281 | None:intergenic | 35.0% | |
| TGAGGATGAACATAATGAAG+AGG | - | chr2_4:62247268-62247287 | None:intergenic | 35.0% | |
| TGAAGAAAAATACGTGGTTG+TGG | - | chr2_4:62247325-62247344 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGGTGCTTTAT+AGG | + | chr2_4:62247526-62247545 | Msa0340840:intron | 35.0% |
| ! | TCGGATTCGAGTCTTATAAA+TGG | + | chr2_4:62247799-62247818 | Msa0340840:intron | 35.0% |
| AAATAGACCCTAACTCATAG+GGG | - | chr2_4:62247851-62247870 | None:intergenic | 35.0% | |
| CAAATAGACCCTAACTCATA+GGG | - | chr2_4:62247852-62247871 | None:intergenic | 35.0% | |
| TCAAATAGACCCTAACTCAT+AGG | - | chr2_4:62247853-62247872 | None:intergenic | 35.0% | |
| ! | ATGCTCTCAATTTTGAATCG+CGG | + | chr2_4:62247949-62247968 | Msa0340840:intron | 35.0% |
| ! | CAATTTTGAATCGCGGAAAT+TGG | + | chr2_4:62247956-62247975 | Msa0340840:intron | 35.0% |
| GCTGTTTGTATAAGCTATCA+TGG | - | chr2_4:62248166-62248185 | None:intergenic | 35.0% | |
| ATTAAGCTGTTTACCCAAAC+AGG | + | chr2_4:62248289-62248308 | Msa0340840:intron | 35.0% | |
| ATCATATTGGACCTGGAATA+AGG | - | chr2_4:62248316-62248335 | None:intergenic | 35.0% | |
| TGATACAAAATGCAGAATGC+AGG | + | chr2_4:62248429-62248448 | Msa0340840:CDS | 35.0% | |
| !! | GCATTGTGTTTTTGTCAGAT+AGG | - | chr2_4:62248616-62248635 | None:intergenic | 35.0% |
| CTGACAAAAACACAATGCAA+AGG | + | chr2_4:62248618-62248637 | Msa0340840:CDS | 35.0% | |
| CTGAGTCTTAATCCTCATAT+GGG | - | chr2_4:62247068-62247087 | None:intergenic | 35.0% | |
| CTATGCAAAAGATTCATGCA+AGG | + | chr2_4:62247088-62247107 | Msa0340840:CDS | 35.0% | |
| TGAACATAATGAAGAGGTAG+AGG | - | chr2_4:62247262-62247281 | None:intergenic | 35.0% | |
| TGAGGATGAACATAATGAAG+AGG | - | chr2_4:62247268-62247287 | None:intergenic | 35.0% | |
| TGAAGAAAAATACGTGGTTG+TGG | - | chr2_4:62247325-62247344 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGGTGCTTTAT+AGG | + | chr2_4:62247526-62247545 | Msa0340840:intron | 35.0% |
| ! | TCGGATTCGAGTCTTATAAA+TGG | + | chr2_4:62247799-62247818 | Msa0340840:intron | 35.0% |
| AAATAGACCCTAACTCATAG+GGG | - | chr2_4:62247851-62247870 | None:intergenic | 35.0% | |
| CAAATAGACCCTAACTCATA+GGG | - | chr2_4:62247852-62247871 | None:intergenic | 35.0% | |
| TCAAATAGACCCTAACTCAT+AGG | - | chr2_4:62247853-62247872 | None:intergenic | 35.0% | |
| ! | ATGCTCTCAATTTTGAATCG+CGG | + | chr2_4:62247949-62247968 | Msa0340840:intron | 35.0% |
| ! | CAATTTTGAATCGCGGAAAT+TGG | + | chr2_4:62247956-62247975 | Msa0340840:intron | 35.0% |
| GCTGTTTGTATAAGCTATCA+TGG | - | chr2_4:62248166-62248185 | None:intergenic | 35.0% | |
| ATTAAGCTGTTTACCCAAAC+AGG | + | chr2_4:62248289-62248308 | Msa0340840:intron | 35.0% | |
| ATCATATTGGACCTGGAATA+AGG | - | chr2_4:62248316-62248335 | None:intergenic | 35.0% | |
| TGATACAAAATGCAGAATGC+AGG | + | chr2_4:62248429-62248448 | Msa0340840:CDS | 35.0% | |
| !! | GCATTGTGTTTTTGTCAGAT+AGG | - | chr2_4:62248616-62248635 | None:intergenic | 35.0% |
| CTGACAAAAACACAATGCAA+AGG | + | chr2_4:62248618-62248637 | Msa0340840:CDS | 35.0% | |
| GCTGAGTCTTAATCCTCATA+TGG | - | chr2_4:62247069-62247088 | None:intergenic | 40.0% | |
| ACATAATGAAGAGGTAGAGG+AGG | - | chr2_4:62247259-62247278 | None:intergenic | 40.0% | |
| CACATTTGTCAGTGTTGTGT+TGG | - | chr2_4:62247479-62247498 | None:intergenic | 40.0% | |
| ! | TAAAGCACCAACACAAACAC+CGG | - | chr2_4:62247525-62247544 | None:intergenic | 40.0% |
| ! | GCAGCTTGCTTAATCAGTTA+TGG | + | chr2_4:62247661-62247680 | Msa0340840:intron | 40.0% |
| GCTTAATCAGTTATGGCATG+TGG | + | chr2_4:62247668-62247687 | Msa0340840:intron | 40.0% | |
| TGTGGTGAATTTAGCTAGGA+TGG | + | chr2_4:62247686-62247705 | Msa0340840:intron | 40.0% | |
| ! | ATGATTTGCCCCTATGAGTT+AGG | + | chr2_4:62247840-62247859 | Msa0340840:intron | 40.0% |
| ! | TGATTTGCCCCTATGAGTTA+GGG | + | chr2_4:62247841-62247860 | Msa0340840:intron | 40.0% |
| ! | TTTTGAATCGCGGAAATTGG+CGG | + | chr2_4:62247959-62247978 | Msa0340840:intron | 40.0% |
| CATGGAAATCATATTGGACC+TGG | - | chr2_4:62248323-62248342 | None:intergenic | 40.0% | |
| AGTTTGTGAATGCAGAACCA+GGG | + | chr2_4:62248405-62248424 | Msa0340840:intron | 40.0% | |
| ! | TCTGCATTTTGTATCATCCC+TGG | - | chr2_4:62248425-62248444 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTGTGCAGAAGAG+TGG | - | chr2_4:62248490-62248509 | None:intergenic | 40.0% |
| CGGTCCATTCTTATGTAAAG+AGG | - | chr2_4:62248579-62248598 | None:intergenic | 40.0% | |
| GATAGGGATTTACCAGCATA+CGG | - | chr2_4:62248599-62248618 | None:intergenic | 40.0% | |
| TCATTCGTCTCTATGCTGAT+TGG | + | chr2_4:62248642-62248661 | Msa0340840:CDS | 40.0% | |
| GCTGAGTCTTAATCCTCATA+TGG | - | chr2_4:62247069-62247088 | None:intergenic | 40.0% | |
| ACATAATGAAGAGGTAGAGG+AGG | - | chr2_4:62247259-62247278 | None:intergenic | 40.0% | |
| CACATTTGTCAGTGTTGTGT+TGG | - | chr2_4:62247479-62247498 | None:intergenic | 40.0% | |
| ! | TAAAGCACCAACACAAACAC+CGG | - | chr2_4:62247525-62247544 | None:intergenic | 40.0% |
| ! | GCAGCTTGCTTAATCAGTTA+TGG | + | chr2_4:62247661-62247680 | Msa0340840:intron | 40.0% |
| GCTTAATCAGTTATGGCATG+TGG | + | chr2_4:62247668-62247687 | Msa0340840:intron | 40.0% | |
| TGTGGTGAATTTAGCTAGGA+TGG | + | chr2_4:62247686-62247705 | Msa0340840:intron | 40.0% | |
| ! | ATGATTTGCCCCTATGAGTT+AGG | + | chr2_4:62247840-62247859 | Msa0340840:intron | 40.0% |
| ! | TGATTTGCCCCTATGAGTTA+GGG | + | chr2_4:62247841-62247860 | Msa0340840:intron | 40.0% |
| ! | TTTTGAATCGCGGAAATTGG+CGG | + | chr2_4:62247959-62247978 | Msa0340840:intron | 40.0% |
| CATGGAAATCATATTGGACC+TGG | - | chr2_4:62248323-62248342 | None:intergenic | 40.0% | |
| AGTTTGTGAATGCAGAACCA+GGG | + | chr2_4:62248405-62248424 | Msa0340840:intron | 40.0% | |
| ! | TCTGCATTTTGTATCATCCC+TGG | - | chr2_4:62248425-62248444 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTGTGCAGAAGAG+TGG | - | chr2_4:62248490-62248509 | None:intergenic | 40.0% |
| CGGTCCATTCTTATGTAAAG+AGG | - | chr2_4:62248579-62248598 | None:intergenic | 40.0% | |
| GATAGGGATTTACCAGCATA+CGG | - | chr2_4:62248599-62248618 | None:intergenic | 40.0% | |
| TCATTCGTCTCTATGCTGAT+TGG | + | chr2_4:62248642-62248661 | Msa0340840:CDS | 40.0% | |
| CCATGTGCATAGTTGCATTG+GGG | - | chr2_4:62247133-62247152 | None:intergenic | 45.0% | |
| GCCATGTGCATAGTTGCATT+GGG | - | chr2_4:62247134-62247153 | None:intergenic | 45.0% | |
| AGCCATGTGCATAGTTGCAT+TGG | - | chr2_4:62247135-62247154 | None:intergenic | 45.0% | |
| CACACCAGACATTGTAGCTA+CGG | + | chr2_4:62247205-62247224 | Msa0340840:CDS | 45.0% | |
| CATTCGATCAGTGTTGTGTC+CGG | + | chr2_4:62247503-62247522 | Msa0340840:intron | 45.0% | |
| GGCATGTGGTGAATTTAGCT+AGG | + | chr2_4:62247682-62247701 | Msa0340840:intron | 45.0% | |
| ! | TGGTTCTTCTGCCGATTATG+AGG | + | chr2_4:62247753-62247772 | Msa0340840:intron | 45.0% |
| GTTCGAATTCCACTACGCTA+TGG | + | chr2_4:62248063-62248082 | Msa0340840:intron | 45.0% | |
| ATAGTGTCACCATAGCGTAG+TGG | - | chr2_4:62248075-62248094 | None:intergenic | 45.0% | |
| CCTGGAATAAGGTCCTGTTT+GGG | - | chr2_4:62248305-62248324 | None:intergenic | 45.0% | |
| ACCTGGAATAAGGTCCTGTT+TGG | - | chr2_4:62248306-62248325 | None:intergenic | 45.0% | |
| GAGTTTGTGAATGCAGAACC+AGG | + | chr2_4:62248404-62248423 | Msa0340840:intron | 45.0% | |
| TCTGCTGCTGCTACAACTAA+TGG | + | chr2_4:62248464-62248483 | Msa0340840:CDS | 45.0% | |
| ! | ATGGCTGAGGTATTTGTAGC+AGG | - | chr2_4:62248542-62248561 | None:intergenic | 45.0% |
| AAATACCTCAGCCATCACAG+CGG | + | chr2_4:62248547-62248566 | Msa0340840:CDS | 45.0% | |
| CATAAGAATGGACCGTATGC+TGG | + | chr2_4:62248584-62248603 | Msa0340840:CDS | 45.0% | |
| CCATGTGCATAGTTGCATTG+GGG | - | chr2_4:62247133-62247152 | None:intergenic | 45.0% | |
| GCCATGTGCATAGTTGCATT+GGG | - | chr2_4:62247134-62247153 | None:intergenic | 45.0% | |
| AGCCATGTGCATAGTTGCAT+TGG | - | chr2_4:62247135-62247154 | None:intergenic | 45.0% | |
| CACACCAGACATTGTAGCTA+CGG | + | chr2_4:62247205-62247224 | Msa0340840:CDS | 45.0% | |
| CATTCGATCAGTGTTGTGTC+CGG | + | chr2_4:62247503-62247522 | Msa0340840:intron | 45.0% | |
| GGCATGTGGTGAATTTAGCT+AGG | + | chr2_4:62247682-62247701 | Msa0340840:intron | 45.0% | |
| ! | TGGTTCTTCTGCCGATTATG+AGG | + | chr2_4:62247753-62247772 | Msa0340840:intron | 45.0% |
| GTTCGAATTCCACTACGCTA+TGG | + | chr2_4:62248063-62248082 | Msa0340840:intron | 45.0% | |
| ATAGTGTCACCATAGCGTAG+TGG | - | chr2_4:62248075-62248094 | None:intergenic | 45.0% | |
| CCTGGAATAAGGTCCTGTTT+GGG | - | chr2_4:62248305-62248324 | None:intergenic | 45.0% | |
| ACCTGGAATAAGGTCCTGTT+TGG | - | chr2_4:62248306-62248325 | None:intergenic | 45.0% | |
| GAGTTTGTGAATGCAGAACC+AGG | + | chr2_4:62248404-62248423 | Msa0340840:intron | 45.0% | |
| TCTGCTGCTGCTACAACTAA+TGG | + | chr2_4:62248464-62248483 | Msa0340840:CDS | 45.0% | |
| ! | ATGGCTGAGGTATTTGTAGC+AGG | - | chr2_4:62248542-62248561 | None:intergenic | 45.0% |
| AAATACCTCAGCCATCACAG+CGG | + | chr2_4:62248547-62248566 | Msa0340840:CDS | 45.0% | |
| CATAAGAATGGACCGTATGC+TGG | + | chr2_4:62248584-62248603 | Msa0340840:CDS | 45.0% | |
| !!! | TTTTTGTTATTAAAATAAAA+TGG | + | chr2_4:62247590-62247609 | Msa0340840:intron | 5.0% |
| !!! | TTTTGTTATTAAAATAAAAT+GGG | + | chr2_4:62247591-62247610 | Msa0340840:intron | 5.0% |
| !!! | TTTTTGTTATTAAAATAAAA+TGG | + | chr2_4:62247590-62247609 | Msa0340840:intron | 5.0% |
| !!! | TTTTGTTATTAAAATAAAAT+GGG | + | chr2_4:62247591-62247610 | Msa0340840:intron | 5.0% |
| TTGCATTGGGGTGCAACAAG+AGG | - | chr2_4:62247121-62247140 | None:intergenic | 50.0% | |
| CCCCAATGCAACTATGCACA+TGG | + | chr2_4:62247130-62247149 | Msa0340840:CDS | 50.0% | |
| AACGACCTCAGAACAGCAAC+AGG | + | chr2_4:62247157-62247176 | Msa0340840:CDS | 50.0% | |
| ! | TTGGTCCTGTTGCTGTTCTG+AGG | - | chr2_4:62247165-62247184 | None:intergenic | 50.0% |
| GTGTCCGTAGCTACAATGTC+TGG | - | chr2_4:62247212-62247231 | None:intergenic | 50.0% | |
| GTAGAGGAGGAGTTGCATGA+AGG | - | chr2_4:62247246-62247265 | None:intergenic | 50.0% | |
| GTTGTGTCCGGTGTTTGTGT+TGG | + | chr2_4:62247515-62247534 | Msa0340840:intron | 50.0% | |
| TAGCGGCGCTGTAGCATTAT+AGG | - | chr2_4:62248004-62248023 | None:intergenic | 50.0% | |
| CCCAAACAGGACCTTATTCC+AGG | + | chr2_4:62248302-62248321 | Msa0340840:intron | 50.0% | |
| TTGCATTGGGGTGCAACAAG+AGG | - | chr2_4:62247121-62247140 | None:intergenic | 50.0% | |
| CCCCAATGCAACTATGCACA+TGG | + | chr2_4:62247130-62247149 | Msa0340840:CDS | 50.0% | |
| AACGACCTCAGAACAGCAAC+AGG | + | chr2_4:62247157-62247176 | Msa0340840:CDS | 50.0% | |
| ! | TTGGTCCTGTTGCTGTTCTG+AGG | - | chr2_4:62247165-62247184 | None:intergenic | 50.0% |
| GTGTCCGTAGCTACAATGTC+TGG | - | chr2_4:62247212-62247231 | None:intergenic | 50.0% | |
| GTAGAGGAGGAGTTGCATGA+AGG | - | chr2_4:62247246-62247265 | None:intergenic | 50.0% | |
| GTTGTGTCCGGTGTTTGTGT+TGG | + | chr2_4:62247515-62247534 | Msa0340840:intron | 50.0% | |
| TAGCGGCGCTGTAGCATTAT+AGG | - | chr2_4:62248004-62248023 | None:intergenic | 50.0% | |
| CCCAAACAGGACCTTATTCC+AGG | + | chr2_4:62248302-62248321 | Msa0340840:intron | 50.0% | |
| AGAGGTAGTTGCCGCTGTGA+TGG | - | chr2_4:62248561-62248580 | None:intergenic | 55.0% | |
| AGAGGTAGTTGCCGCTGTGA+TGG | - | chr2_4:62248561-62248580 | None:intergenic | 55.0% | |
| AGTTGCCGCTGTGATGGCTG+AGG | - | chr2_4:62248555-62248574 | None:intergenic | 60.0% | |
| AGTTGCCGCTGTGATGGCTG+AGG | - | chr2_4:62248555-62248574 | None:intergenic | 60.0% | |
| TGCTGCTGCTGCTGCTGCTG+AGG | - | chr2_4:62247286-62247305 | None:intergenic | 65.0% | |
| TGCTGCTGCTGCTGCTGCTG+AGG | - | chr2_4:62247286-62247305 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 62247037 | 62248670 | 62247037 | ID=Msa0340840;Name=Msa0340840 |
| chr2_4 | mRNA | 62247037 | 62248670 | 62247037 | ID=Msa0340840-mRNA-1;Parent=Msa0340840;Name=Msa0340840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|181 |
| chr2_4 | exon | 62247037 | 62247331 | 62247037 | ID=Msa0340840-mRNA-1:exon:19723;Parent=Msa0340840-mRNA-1 |
| chr2_4 | exon | 62248420 | 62248670 | 62248420 | ID=Msa0340840-mRNA-1:exon:19724;Parent=Msa0340840-mRNA-1 |
| chr2_4 | CDS | 62247037 | 62247331 | 62247037 | ID=Msa0340840-mRNA-1:cds;Parent=Msa0340840-mRNA-1 |
| chr2_4 | CDS | 62248420 | 62248670 | 62248420 | ID=Msa0340840-mRNA-1:cds;Parent=Msa0340840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
