Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340880 | XP_003597853.1 | 87.912 | 182 | 20 | 2 | 1 | 181 | 1 | 181 | 7.62e-106 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0340880 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340880 | MtrunA17_Chr2g0332631 | 86.000 | 100 | 12 | 2 | 1 | 99 | 1 | 99 | 3.65e-52 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAGTCTTAATCCTCATA+TGG | 0.366307 | 2_4:-62262692 | None:intergenic |
| TCTGCTGCTGCTACAACTAA+TGG | 0.397952 | 2_4:+62264091 | Msa0340880:CDS |
| GCCATGTGCATAGTTGCATT+GGG | 0.419796 | 2_4:-62262757 | None:intergenic |
| TGAACATAATGAAGAGGTAG+AGG | 0.427658 | 2_4:-62262885 | None:intergenic |
| AACGACCTCAGAACAGCAAC+AGG | 0.451715 | 2_4:+62262783 | Msa0340880:CDS |
| AAAATTCACAAACCCATATG+AGG | 0.470113 | 2_4:+62262679 | Msa0340880:CDS |
| TCATTCGTCTCTATGCTGAT+TGG | 0.477473 | 2_4:+62264269 | Msa0340880:CDS |
| ACTACCTCTTTACATAAGAA+TGG | 0.478765 | 2_4:+62264199 | Msa0340880:CDS |
| ATGAACATTCTACAGAATCT+TGG | 0.480970 | 2_4:-62262807 | None:intergenic |
| AGCCATGTGCATAGTTGCAT+TGG | 0.488645 | 2_4:-62262758 | None:intergenic |
| CTGAGTCTTAATCCTCATAT+GGG | 0.496970 | 2_4:-62262691 | None:intergenic |
| CATAAGAATGGACCGTATGC+TGG | 0.500563 | 2_4:+62264211 | Msa0340880:CDS |
| CGGTCCATTCTTATGTAAAG+AGG | 0.523765 | 2_4:-62264203 | None:intergenic |
| ACATAATGAAGAGGTAGAGG+AGG | 0.543147 | 2_4:-62262882 | None:intergenic |
| GTAGAGGAGGAGTTGCATGA+AGG | 0.548027 | 2_4:-62262869 | None:intergenic |
| TGATACAAAATGCAGAATGC+AGG | 0.549025 | 2_4:+62264056 | Msa0340880:CDS |
| TTGGTCCTGTTGCTGTTCTG+AGG | 0.555812 | 2_4:-62262788 | None:intergenic |
| ATGGCTGAGGTATTTGTAGC+AGG | 0.556435 | 2_4:-62264166 | None:intergenic |
| CCCCAATGCAACTATGCACA+TGG | 0.558064 | 2_4:+62262756 | Msa0340880:CDS |
| GTGTCCGTAGCTACAATGTC+TGG | 0.558270 | 2_4:-62262835 | None:intergenic |
| AGAGGTAGTTGCCGCTGTGA+TGG | 0.562973 | 2_4:-62264185 | None:intergenic |
| CACACCAGACATTGTAGCTA+CGG | 0.572650 | 2_4:+62262831 | Msa0340880:CDS |
| TTGCATTGGGGTGCAACAAG+AGG | 0.590171 | 2_4:-62262744 | None:intergenic |
| GATAGGGATTTACCAGCATA+CGG | 0.594337 | 2_4:-62264223 | None:intergenic |
| AGTTGCCGCTGTGATGGCTG+AGG | 0.641938 | 2_4:-62264179 | None:intergenic |
| TGAGGATGAACATAATGAAG+AGG | 0.648497 | 2_4:-62262891 | None:intergenic |
| CCATGTGCATAGTTGCATTG+GGG | 0.656451 | 2_4:-62262756 | None:intergenic |
| CTATGCAAAAGATTCATGCA+AGG | 0.677580 | 2_4:+62262714 | Msa0340880:CDS |
| AGTTTGTGAATGCAGAACCA+GGG | 0.757579 | 2_4:+62264032 | Msa0340880:intron |
| AAATACCTCAGCCATCACAG+CGG | 0.800744 | 2_4:+62264174 | Msa0340880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAAACATTATTACT+TGG | + | chr2_4:62263252-62263271 | Msa0340880:intron | 10.0% |
| !!! | TTTTTTTAAACATTATTACT+TGG | + | chr2_4:62263252-62263271 | Msa0340880:intron | 10.0% |
| !! | TTAATTAATAAGTAATGTCT+CGG | + | chr2_4:62263407-62263426 | Msa0340880:intron | 15.0% |
| !! | AATAAGCTAAAAACAATTTA+TGG | - | chr2_4:62263758-62263777 | None:intergenic | 15.0% |
| !! | TTAATTAATAAGTAATGTCT+CGG | + | chr2_4:62263407-62263426 | Msa0340880:intron | 15.0% |
| !! | AATAAGCTAAAAACAATTTA+TGG | - | chr2_4:62263758-62263777 | None:intergenic | 15.0% |
| !! | TTCTTAGTATTAGAACAAAA+AGG | + | chr2_4:62263021-62263040 | Msa0340880:intron | 20.0% |
| !! | TCTTAGTATTAGAACAAAAA+GGG | + | chr2_4:62263022-62263041 | Msa0340880:intron | 20.0% |
| !!! | TTTATAGGTTTTATGTAATC+TGG | + | chr2_4:62263167-62263186 | Msa0340880:intron | 20.0% |
| !! | ACATAAACACTTATATGATA+TGG | + | chr2_4:62263873-62263892 | Msa0340880:intron | 20.0% |
| !! | TTCTTAGTATTAGAACAAAA+AGG | + | chr2_4:62263021-62263040 | Msa0340880:intron | 20.0% |
| !! | TCTTAGTATTAGAACAAAAA+GGG | + | chr2_4:62263022-62263041 | Msa0340880:intron | 20.0% |
| !!! | TTTATAGGTTTTATGTAATC+TGG | + | chr2_4:62263167-62263186 | Msa0340880:intron | 20.0% |
| !! | ACATAAACACTTATATGATA+TGG | + | chr2_4:62263873-62263892 | Msa0340880:intron | 20.0% |
| ! | AAACAACAAACACATAATGT+TGG | + | chr2_4:62263360-62263379 | Msa0340880:intron | 25.0% |
| ! | TAATTAAGCAACCTCATAAT+CGG | - | chr2_4:62263394-62263413 | None:intergenic | 25.0% |
| ! | TAAATGGAAAAAATGTGCAT+CGG | + | chr2_4:62263442-62263461 | Msa0340880:intron | 25.0% |
| ! | AGTAGAAAATTGTCAAATAG+CGG | - | chr2_4:62263648-62263667 | None:intergenic | 25.0% |
| !! | CAATTTTCTACTAAATATCG+TGG | + | chr2_4:62263656-62263675 | Msa0340880:intron | 25.0% |
| ! | AATAGAATATAGAACTGTGT+TGG | + | chr2_4:62263987-62264006 | Msa0340880:intron | 25.0% |
| ! | AAACAACAAACACATAATGT+TGG | + | chr2_4:62263360-62263379 | Msa0340880:intron | 25.0% |
| ! | TAATTAAGCAACCTCATAAT+CGG | - | chr2_4:62263394-62263413 | None:intergenic | 25.0% |
| ! | TAAATGGAAAAAATGTGCAT+CGG | + | chr2_4:62263442-62263461 | Msa0340880:intron | 25.0% |
| ! | AGTAGAAAATTGTCAAATAG+CGG | - | chr2_4:62263648-62263667 | None:intergenic | 25.0% |
| !! | CAATTTTCTACTAAATATCG+TGG | + | chr2_4:62263656-62263675 | Msa0340880:intron | 25.0% |
| ! | AATAGAATATAGAACTGTGT+TGG | + | chr2_4:62263987-62264006 | Msa0340880:intron | 25.0% |
| AAAATTCACAAACCCATATG+AGG | + | chr2_4:62262679-62262698 | Msa0340880:CDS | 30.0% | |
| ATGAACATTCTACAGAATCT+TGG | - | chr2_4:62262810-62262829 | None:intergenic | 30.0% | |
| AGAAGTTGAAGAAAAATACG+TGG | - | chr2_4:62262957-62262976 | None:intergenic | 30.0% | |
| !! | ACTACACTAACACTACTTTT+TGG | + | chr2_4:62262984-62263003 | Msa0340880:intron | 30.0% |
| ! | GACTTCAGTTTATCTTTTGT+TGG | + | chr2_4:62263837-62263856 | Msa0340880:intron | 30.0% |
| AGCTTTCATGGAAATCATAT+TGG | - | chr2_4:62263956-62263975 | None:intergenic | 30.0% | |
| TGAATCACAAAAAGCTTTCA+TGG | - | chr2_4:62263968-62263987 | None:intergenic | 30.0% | |
| ACTACCTCTTTACATAAGAA+TGG | + | chr2_4:62264199-62264218 | Msa0340880:CDS | 30.0% | |
| !! | CATTGTGTTTTTGTCAGATA+GGG | - | chr2_4:62264242-62264261 | None:intergenic | 30.0% |
| TGACAAAAACACAATGCAAA+GGG | + | chr2_4:62264246-62264265 | Msa0340880:CDS | 30.0% | |
| AAAATTCACAAACCCATATG+AGG | + | chr2_4:62262679-62262698 | Msa0340880:CDS | 30.0% | |
| ATGAACATTCTACAGAATCT+TGG | - | chr2_4:62262810-62262829 | None:intergenic | 30.0% | |
| AGAAGTTGAAGAAAAATACG+TGG | - | chr2_4:62262957-62262976 | None:intergenic | 30.0% | |
| !! | ACTACACTAACACTACTTTT+TGG | + | chr2_4:62262984-62263003 | Msa0340880:intron | 30.0% |
| ! | GACTTCAGTTTATCTTTTGT+TGG | + | chr2_4:62263837-62263856 | Msa0340880:intron | 30.0% |
| AGCTTTCATGGAAATCATAT+TGG | - | chr2_4:62263956-62263975 | None:intergenic | 30.0% | |
| TGAATCACAAAAAGCTTTCA+TGG | - | chr2_4:62263968-62263987 | None:intergenic | 30.0% | |
| ACTACCTCTTTACATAAGAA+TGG | + | chr2_4:62264199-62264218 | Msa0340880:CDS | 30.0% | |
| !! | CATTGTGTTTTTGTCAGATA+GGG | - | chr2_4:62264242-62264261 | None:intergenic | 30.0% |
| TGACAAAAACACAATGCAAA+GGG | + | chr2_4:62264246-62264265 | Msa0340880:CDS | 30.0% | |
| CTGAGTCTTAATCCTCATAT+GGG | - | chr2_4:62262694-62262713 | None:intergenic | 35.0% | |
| CTATGCAAAAGATTCATGCA+AGG | + | chr2_4:62262714-62262733 | Msa0340880:CDS | 35.0% | |
| TGAACATAATGAAGAGGTAG+AGG | - | chr2_4:62262888-62262907 | None:intergenic | 35.0% | |
| TGAGGATGAACATAATGAAG+AGG | - | chr2_4:62262894-62262913 | None:intergenic | 35.0% | |
| TGAAGAAAAATACGTGGTTG+TGG | - | chr2_4:62262951-62262970 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGGTGCTTTAT+AGG | + | chr2_4:62263152-62263171 | Msa0340880:intron | 35.0% |
| ! | TCGGATTCGAGTCTTATAAA+TGG | + | chr2_4:62263426-62263445 | Msa0340880:intron | 35.0% |
| AAATAGACCCTAACTCATAG+GGG | - | chr2_4:62263478-62263497 | None:intergenic | 35.0% | |
| CAAATAGACCCTAACTCATA+GGG | - | chr2_4:62263479-62263498 | None:intergenic | 35.0% | |
| TCAAATAGACCCTAACTCAT+AGG | - | chr2_4:62263480-62263499 | None:intergenic | 35.0% | |
| ! | ATGCTCTCAATTTTGAATCG+CGG | + | chr2_4:62263576-62263595 | Msa0340880:intron | 35.0% |
| ! | CAATTTTGAATCGCGGAAAT+TGG | + | chr2_4:62263583-62263602 | Msa0340880:intron | 35.0% |
| GCTGTTTGTATAAGCTATCA+TGG | - | chr2_4:62263793-62263812 | None:intergenic | 35.0% | |
| ATTAAGCTGTTTACCCAAAC+AGG | + | chr2_4:62263916-62263935 | Msa0340880:intron | 35.0% | |
| ATCATATTGGACCTGGAATA+AGG | - | chr2_4:62263943-62263962 | None:intergenic | 35.0% | |
| TGATACAAAATGCAGAATGC+AGG | + | chr2_4:62264056-62264075 | Msa0340880:CDS | 35.0% | |
| !! | GCATTGTGTTTTTGTCAGAT+AGG | - | chr2_4:62264243-62264262 | None:intergenic | 35.0% |
| CTGACAAAAACACAATGCAA+AGG | + | chr2_4:62264245-62264264 | Msa0340880:CDS | 35.0% | |
| CTGAGTCTTAATCCTCATAT+GGG | - | chr2_4:62262694-62262713 | None:intergenic | 35.0% | |
| CTATGCAAAAGATTCATGCA+AGG | + | chr2_4:62262714-62262733 | Msa0340880:CDS | 35.0% | |
| TGAACATAATGAAGAGGTAG+AGG | - | chr2_4:62262888-62262907 | None:intergenic | 35.0% | |
| TGAGGATGAACATAATGAAG+AGG | - | chr2_4:62262894-62262913 | None:intergenic | 35.0% | |
| TGAAGAAAAATACGTGGTTG+TGG | - | chr2_4:62262951-62262970 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGGTGCTTTAT+AGG | + | chr2_4:62263152-62263171 | Msa0340880:intron | 35.0% |
| ! | TCGGATTCGAGTCTTATAAA+TGG | + | chr2_4:62263426-62263445 | Msa0340880:intron | 35.0% |
| AAATAGACCCTAACTCATAG+GGG | - | chr2_4:62263478-62263497 | None:intergenic | 35.0% | |
| CAAATAGACCCTAACTCATA+GGG | - | chr2_4:62263479-62263498 | None:intergenic | 35.0% | |
| TCAAATAGACCCTAACTCAT+AGG | - | chr2_4:62263480-62263499 | None:intergenic | 35.0% | |
| ! | ATGCTCTCAATTTTGAATCG+CGG | + | chr2_4:62263576-62263595 | Msa0340880:intron | 35.0% |
| ! | CAATTTTGAATCGCGGAAAT+TGG | + | chr2_4:62263583-62263602 | Msa0340880:intron | 35.0% |
| GCTGTTTGTATAAGCTATCA+TGG | - | chr2_4:62263793-62263812 | None:intergenic | 35.0% | |
| ATTAAGCTGTTTACCCAAAC+AGG | + | chr2_4:62263916-62263935 | Msa0340880:intron | 35.0% | |
| ATCATATTGGACCTGGAATA+AGG | - | chr2_4:62263943-62263962 | None:intergenic | 35.0% | |
| TGATACAAAATGCAGAATGC+AGG | + | chr2_4:62264056-62264075 | Msa0340880:CDS | 35.0% | |
| !! | GCATTGTGTTTTTGTCAGAT+AGG | - | chr2_4:62264243-62264262 | None:intergenic | 35.0% |
| CTGACAAAAACACAATGCAA+AGG | + | chr2_4:62264245-62264264 | Msa0340880:CDS | 35.0% | |
| GCTGAGTCTTAATCCTCATA+TGG | - | chr2_4:62262695-62262714 | None:intergenic | 40.0% | |
| ACATAATGAAGAGGTAGAGG+AGG | - | chr2_4:62262885-62262904 | None:intergenic | 40.0% | |
| CACATTTGTCAGTGTTGTGT+TGG | - | chr2_4:62263105-62263124 | None:intergenic | 40.0% | |
| ! | TAAAGCACCAACACAAACAC+CGG | - | chr2_4:62263151-62263170 | None:intergenic | 40.0% |
| ! | GCAGCTTGCTTAATCAGTTA+TGG | + | chr2_4:62263288-62263307 | Msa0340880:intron | 40.0% |
| GCTTAATCAGTTATGGCATG+TGG | + | chr2_4:62263295-62263314 | Msa0340880:intron | 40.0% | |
| TGTGGTGAATTTAGCTAGGA+TGG | + | chr2_4:62263313-62263332 | Msa0340880:intron | 40.0% | |
| ! | ATGATTTGCCCCTATGAGTT+AGG | + | chr2_4:62263467-62263486 | Msa0340880:intron | 40.0% |
| ! | TGATTTGCCCCTATGAGTTA+GGG | + | chr2_4:62263468-62263487 | Msa0340880:intron | 40.0% |
| ! | TTTTGAATCGCGGAAATTGG+CGG | + | chr2_4:62263586-62263605 | Msa0340880:intron | 40.0% |
| CATGGAAATCATATTGGACC+TGG | - | chr2_4:62263950-62263969 | None:intergenic | 40.0% | |
| AGTTTGTGAATGCAGAACCA+GGG | + | chr2_4:62264032-62264051 | Msa0340880:intron | 40.0% | |
| ! | TCTGCATTTTGTATCATCCC+TGG | - | chr2_4:62264052-62264071 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTGTGCAGAAGAG+TGG | - | chr2_4:62264117-62264136 | None:intergenic | 40.0% |
| CGGTCCATTCTTATGTAAAG+AGG | - | chr2_4:62264206-62264225 | None:intergenic | 40.0% | |
| GATAGGGATTTACCAGCATA+CGG | - | chr2_4:62264226-62264245 | None:intergenic | 40.0% | |
| TCATTCGTCTCTATGCTGAT+TGG | + | chr2_4:62264269-62264288 | Msa0340880:CDS | 40.0% | |
| GCTGAGTCTTAATCCTCATA+TGG | - | chr2_4:62262695-62262714 | None:intergenic | 40.0% | |
| ACATAATGAAGAGGTAGAGG+AGG | - | chr2_4:62262885-62262904 | None:intergenic | 40.0% | |
| CACATTTGTCAGTGTTGTGT+TGG | - | chr2_4:62263105-62263124 | None:intergenic | 40.0% | |
| ! | TAAAGCACCAACACAAACAC+CGG | - | chr2_4:62263151-62263170 | None:intergenic | 40.0% |
| ! | GCAGCTTGCTTAATCAGTTA+TGG | + | chr2_4:62263288-62263307 | Msa0340880:intron | 40.0% |
| GCTTAATCAGTTATGGCATG+TGG | + | chr2_4:62263295-62263314 | Msa0340880:intron | 40.0% | |
| TGTGGTGAATTTAGCTAGGA+TGG | + | chr2_4:62263313-62263332 | Msa0340880:intron | 40.0% | |
| ! | ATGATTTGCCCCTATGAGTT+AGG | + | chr2_4:62263467-62263486 | Msa0340880:intron | 40.0% |
| ! | TGATTTGCCCCTATGAGTTA+GGG | + | chr2_4:62263468-62263487 | Msa0340880:intron | 40.0% |
| ! | TTTTGAATCGCGGAAATTGG+CGG | + | chr2_4:62263586-62263605 | Msa0340880:intron | 40.0% |
| CATGGAAATCATATTGGACC+TGG | - | chr2_4:62263950-62263969 | None:intergenic | 40.0% | |
| AGTTTGTGAATGCAGAACCA+GGG | + | chr2_4:62264032-62264051 | Msa0340880:intron | 40.0% | |
| ! | TCTGCATTTTGTATCATCCC+TGG | - | chr2_4:62264052-62264071 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTGTGCAGAAGAG+TGG | - | chr2_4:62264117-62264136 | None:intergenic | 40.0% |
| CGGTCCATTCTTATGTAAAG+AGG | - | chr2_4:62264206-62264225 | None:intergenic | 40.0% | |
| GATAGGGATTTACCAGCATA+CGG | - | chr2_4:62264226-62264245 | None:intergenic | 40.0% | |
| TCATTCGTCTCTATGCTGAT+TGG | + | chr2_4:62264269-62264288 | Msa0340880:CDS | 40.0% | |
| CCATGTGCATAGTTGCATTG+GGG | - | chr2_4:62262759-62262778 | None:intergenic | 45.0% | |
| GCCATGTGCATAGTTGCATT+GGG | - | chr2_4:62262760-62262779 | None:intergenic | 45.0% | |
| AGCCATGTGCATAGTTGCAT+TGG | - | chr2_4:62262761-62262780 | None:intergenic | 45.0% | |
| CACACCAGACATTGTAGCTA+CGG | + | chr2_4:62262831-62262850 | Msa0340880:CDS | 45.0% | |
| CATTCGATCAGTGTTGTGTC+CGG | + | chr2_4:62263129-62263148 | Msa0340880:intron | 45.0% | |
| GGCATGTGGTGAATTTAGCT+AGG | + | chr2_4:62263309-62263328 | Msa0340880:intron | 45.0% | |
| ! | TGGTTCTTCTGCCGATTATG+AGG | + | chr2_4:62263380-62263399 | Msa0340880:intron | 45.0% |
| GTTCGAATTCCACTACGCTA+TGG | + | chr2_4:62263690-62263709 | Msa0340880:intron | 45.0% | |
| ATAGTGTCACCATAGCGTAG+TGG | - | chr2_4:62263702-62263721 | None:intergenic | 45.0% | |
| CCTGGAATAAGGTCCTGTTT+GGG | - | chr2_4:62263932-62263951 | None:intergenic | 45.0% | |
| ACCTGGAATAAGGTCCTGTT+TGG | - | chr2_4:62263933-62263952 | None:intergenic | 45.0% | |
| GAGTTTGTGAATGCAGAACC+AGG | + | chr2_4:62264031-62264050 | Msa0340880:intron | 45.0% | |
| TCTGCTGCTGCTACAACTAA+TGG | + | chr2_4:62264091-62264110 | Msa0340880:CDS | 45.0% | |
| ! | ATGGCTGAGGTATTTGTAGC+AGG | - | chr2_4:62264169-62264188 | None:intergenic | 45.0% |
| AAATACCTCAGCCATCACAG+CGG | + | chr2_4:62264174-62264193 | Msa0340880:CDS | 45.0% | |
| CATAAGAATGGACCGTATGC+TGG | + | chr2_4:62264211-62264230 | Msa0340880:CDS | 45.0% | |
| CCATGTGCATAGTTGCATTG+GGG | - | chr2_4:62262759-62262778 | None:intergenic | 45.0% | |
| GCCATGTGCATAGTTGCATT+GGG | - | chr2_4:62262760-62262779 | None:intergenic | 45.0% | |
| AGCCATGTGCATAGTTGCAT+TGG | - | chr2_4:62262761-62262780 | None:intergenic | 45.0% | |
| CACACCAGACATTGTAGCTA+CGG | + | chr2_4:62262831-62262850 | Msa0340880:CDS | 45.0% | |
| CATTCGATCAGTGTTGTGTC+CGG | + | chr2_4:62263129-62263148 | Msa0340880:intron | 45.0% | |
| GGCATGTGGTGAATTTAGCT+AGG | + | chr2_4:62263309-62263328 | Msa0340880:intron | 45.0% | |
| ! | TGGTTCTTCTGCCGATTATG+AGG | + | chr2_4:62263380-62263399 | Msa0340880:intron | 45.0% |
| GTTCGAATTCCACTACGCTA+TGG | + | chr2_4:62263690-62263709 | Msa0340880:intron | 45.0% | |
| ATAGTGTCACCATAGCGTAG+TGG | - | chr2_4:62263702-62263721 | None:intergenic | 45.0% | |
| CCTGGAATAAGGTCCTGTTT+GGG | - | chr2_4:62263932-62263951 | None:intergenic | 45.0% | |
| ACCTGGAATAAGGTCCTGTT+TGG | - | chr2_4:62263933-62263952 | None:intergenic | 45.0% | |
| GAGTTTGTGAATGCAGAACC+AGG | + | chr2_4:62264031-62264050 | Msa0340880:intron | 45.0% | |
| TCTGCTGCTGCTACAACTAA+TGG | + | chr2_4:62264091-62264110 | Msa0340880:CDS | 45.0% | |
| ! | ATGGCTGAGGTATTTGTAGC+AGG | - | chr2_4:62264169-62264188 | None:intergenic | 45.0% |
| AAATACCTCAGCCATCACAG+CGG | + | chr2_4:62264174-62264193 | Msa0340880:CDS | 45.0% | |
| CATAAGAATGGACCGTATGC+TGG | + | chr2_4:62264211-62264230 | Msa0340880:CDS | 45.0% | |
| !!! | TTTTTGTTATTAAAATAAAA+TGG | + | chr2_4:62263216-62263235 | Msa0340880:intron | 5.0% |
| !!! | TTTTGTTATTAAAATAAAAT+GGG | + | chr2_4:62263217-62263236 | Msa0340880:intron | 5.0% |
| !!! | TTTTTGTTATTAAAATAAAA+TGG | + | chr2_4:62263216-62263235 | Msa0340880:intron | 5.0% |
| !!! | TTTTGTTATTAAAATAAAAT+GGG | + | chr2_4:62263217-62263236 | Msa0340880:intron | 5.0% |
| TTGCATTGGGGTGCAACAAG+AGG | - | chr2_4:62262747-62262766 | None:intergenic | 50.0% | |
| CCCCAATGCAACTATGCACA+TGG | + | chr2_4:62262756-62262775 | Msa0340880:CDS | 50.0% | |
| AACGACCTCAGAACAGCAAC+AGG | + | chr2_4:62262783-62262802 | Msa0340880:CDS | 50.0% | |
| ! | TTGGTCCTGTTGCTGTTCTG+AGG | - | chr2_4:62262791-62262810 | None:intergenic | 50.0% |
| GTGTCCGTAGCTACAATGTC+TGG | - | chr2_4:62262838-62262857 | None:intergenic | 50.0% | |
| GTAGAGGAGGAGTTGCATGA+AGG | - | chr2_4:62262872-62262891 | None:intergenic | 50.0% | |
| GTTGTGTCCGGTGTTTGTGT+TGG | + | chr2_4:62263141-62263160 | Msa0340880:intron | 50.0% | |
| TAGCGGCGCTGTAGCATTAT+AGG | - | chr2_4:62263631-62263650 | None:intergenic | 50.0% | |
| CCCAAACAGGACCTTATTCC+AGG | + | chr2_4:62263929-62263948 | Msa0340880:intron | 50.0% | |
| TTGCATTGGGGTGCAACAAG+AGG | - | chr2_4:62262747-62262766 | None:intergenic | 50.0% | |
| CCCCAATGCAACTATGCACA+TGG | + | chr2_4:62262756-62262775 | Msa0340880:CDS | 50.0% | |
| AACGACCTCAGAACAGCAAC+AGG | + | chr2_4:62262783-62262802 | Msa0340880:CDS | 50.0% | |
| ! | TTGGTCCTGTTGCTGTTCTG+AGG | - | chr2_4:62262791-62262810 | None:intergenic | 50.0% |
| GTGTCCGTAGCTACAATGTC+TGG | - | chr2_4:62262838-62262857 | None:intergenic | 50.0% | |
| GTAGAGGAGGAGTTGCATGA+AGG | - | chr2_4:62262872-62262891 | None:intergenic | 50.0% | |
| GTTGTGTCCGGTGTTTGTGT+TGG | + | chr2_4:62263141-62263160 | Msa0340880:intron | 50.0% | |
| TAGCGGCGCTGTAGCATTAT+AGG | - | chr2_4:62263631-62263650 | None:intergenic | 50.0% | |
| CCCAAACAGGACCTTATTCC+AGG | + | chr2_4:62263929-62263948 | Msa0340880:intron | 50.0% | |
| AGAGGTAGTTGCCGCTGTGA+TGG | - | chr2_4:62264188-62264207 | None:intergenic | 55.0% | |
| AGAGGTAGTTGCCGCTGTGA+TGG | - | chr2_4:62264188-62264207 | None:intergenic | 55.0% | |
| AGTTGCCGCTGTGATGGCTG+AGG | - | chr2_4:62264182-62264201 | None:intergenic | 60.0% | |
| AGTTGCCGCTGTGATGGCTG+AGG | - | chr2_4:62264182-62264201 | None:intergenic | 60.0% | |
| TGCTGCTGCTGCTGCTGCTG+AGG | - | chr2_4:62262912-62262931 | None:intergenic | 65.0% | |
| TGCTGCTGCTGCTGCTGCTG+AGG | - | chr2_4:62262912-62262931 | None:intergenic | 65.0% | |
| GCAGCAGCAGCAGCAGCAGC+AGG | + | chr2_4:62262914-62262933 | Msa0340880:CDS | 70.0% | |
| GCAGCAGCAGCAGCAGCAGC+AGG | + | chr2_4:62262914-62262933 | Msa0340880:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 62262663 | 62264297 | 62262663 | ID=Msa0340880;Name=Msa0340880 |
| chr2_4 | mRNA | 62262663 | 62264297 | 62262663 | ID=Msa0340880-mRNA-1;Parent=Msa0340880;Name=Msa0340880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|181 |
| chr2_4 | exon | 62262663 | 62262957 | 62262663 | ID=Msa0340880-mRNA-1:exon:19725;Parent=Msa0340880-mRNA-1 |
| chr2_4 | exon | 62264047 | 62264297 | 62264047 | ID=Msa0340880-mRNA-1:exon:19726;Parent=Msa0340880-mRNA-1 |
| chr2_4 | CDS | 62262663 | 62262957 | 62262663 | ID=Msa0340880-mRNA-1:cds;Parent=Msa0340880-mRNA-1 |
| chr2_4 | CDS | 62264047 | 62264297 | 62264047 | ID=Msa0340880-mRNA-1:cds;Parent=Msa0340880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
