Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341980 | XP_024632959.1 | 68.750 | 256 | 44 | 5 | 1 | 247 | 1 | 229 | 1.39e-94 | 297 |
| Msa0341980 | XP_024632959.1 | 81.024 | 332 | 47 | 5 | 95 | 412 | 1 | 330 | 1.32e-177 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0341980 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341980 | MtrunA17_Chr2g0331601 | 81.024 | 332 | 47 | 5 | 95 | 412 | 1 | 330 | 0.0 | 508 |
| Msa0341980 | MtrunA17_Chr2g0331601 | 68.750 | 256 | 44 | 5 | 1 | 247 | 1 | 229 | 1.28e-98 | 297 |
| Msa0341980 | MtrunA17_Chr6g0481281 | 40.767 | 287 | 91 | 7 | 195 | 412 | 30 | 306 | 4.06e-54 | 182 |
| Msa0341980 | MtrunA17_Chr6g0481281 | 63.768 | 69 | 20 | 2 | 11 | 75 | 27 | 94 | 3.46e-17 | 81.6 |
| Msa0341980 | MtrunA17_Chr6g0481281 | 59.420 | 69 | 23 | 2 | 109 | 172 | 30 | 98 | 6.78e-15 | 75.1 |
| Msa0341980 | MtrunA17_Chr5g0448221 | 31.429 | 175 | 80 | 5 | 216 | 370 | 55 | 209 | 1.05e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341980 | AT5G56200.1 | 38.542 | 96 | 45 | 2 | 225 | 320 | 79 | 160 | 1.15e-12 | 69.7 |
| Msa0341980 | AT2G26940.1 | 37.143 | 105 | 61 | 1 | 225 | 324 | 49 | 153 | 8.03e-12 | 65.9 |
Find 74 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCTCTCTTCTGCCATTT+TGG | 0.136557 | 2_4:+63874072 | Msa0341970:intron |
| CAATACAAGGTAGTTATAAT+AGG | 0.224337 | 2_4:-63874833 | Msa0341980:CDS |
| CAATACAAGGTAGTAATAAT+AGG | 0.229853 | 2_4:-63874293 | Msa0341980:CDS |
| TGATAATACTATGGCTAGTT+TGG | 0.303196 | 2_4:-63874565 | Msa0341980:CDS |
| GTGATTTATCTTTGCCAAAA+TGG | 0.304193 | 2_4:-63874086 | Msa0341980:CDS |
| GTCCTTTAAAATCTCTATTC+CGG | 0.308881 | 2_4:+63874151 | Msa0341970:intron |
| CATGATGAAGTTTCTGCTTA+AGG | 0.329845 | 2_4:+63874601 | Msa0341970:intron |
| ACAAAAGGTTGATAATACTA+TGG | 0.403285 | 2_4:-63874574 | Msa0341980:CDS |
| GTGACCATACAAAGCATTCA+TGG | 0.407800 | 2_4:+63874185 | Msa0341970:intron |
| CCAACCATGAATGCTTTGTA+TGG | 0.410676 | 2_4:-63874189 | Msa0341980:CDS |
| AATACAAGGTAGTAATAATA+GGG | 0.421996 | 2_4:-63874292 | Msa0341980:CDS |
| TTACTACCTTGTATTGAGAA+AGG | 0.427202 | 2_4:+63874300 | Msa0341970:intron |
| TACTACCTTGTATTGAGAAA+GGG | 0.428907 | 2_4:+63874301 | Msa0341970:intron |
| AATACAAGGTAGTTATAATA+GGG | 0.431054 | 2_4:-63874832 | Msa0341980:CDS |
| ACACATCAGTGCAATGTTTG+TGG | 0.442286 | 2_4:-63874417 | Msa0341980:CDS |
| TTTAGCAATGGAAAAGCATT+GGG | 0.444822 | 2_4:-63874927 | Msa0341980:CDS |
| TTTAGTAACGGAAAAGCATT+GGG | 0.453684 | 2_4:-63874387 | Msa0341980:CDS |
| ATTCGGAAAAGAGGATGAAA+AGG | 0.459648 | 2_4:-63875043 | Msa0341980:CDS |
| TGAGAAAACCTATGAAGATT+CGG | 0.461549 | 2_4:-63875060 | Msa0341980:CDS |
| TTTAGCAACGGAAAAGCATT+GGG | 0.462037 | 2_4:-63874645 | Msa0341980:CDS |
| TGTGTTGGTGAAACATCAAA+TGG | 0.466991 | 2_4:-63873976 | Msa0341980:CDS |
| AGTCAGAAAAGAGGGTGAAA+AGG | 0.473192 | 2_4:-63874503 | Msa0341980:CDS |
| GAATGAGTCGTATGTTATAG+AGG | 0.473597 | 2_4:-63873875 | Msa0341980:CDS |
| GATGATGAAGAAGAAATTGA+TGG | 0.474180 | 2_4:-63874252 | Msa0341980:CDS |
| ACACATCAGTGCAATGTTTG+TGG | 0.475496 | 2_4:-63874957 | Msa0341980:CDS |
| AGAAGAGGTAGAAAGTGTAT+TGG | 0.483023 | 2_4:-63874051 | Msa0341980:CDS |
| CACATCAGTGCAATGTTTGT+GGG | 0.483344 | 2_4:-63874956 | Msa0341980:CDS |
| AGTCTGAAAAGAGGATAAAG+AGG | 0.489348 | 2_4:-63874761 | Msa0341980:CDS |
| AGTGATAAGCAGCCAAAGAA+AGG | 0.491245 | 2_4:-63873916 | Msa0341980:CDS |
| TTTGATAAAGATAGTAAGCA+TGG | 0.491925 | 2_4:-63874804 | Msa0341980:CDS |
| AAGCAGCCAAAGAAAGGAAA+AGG | 0.495623 | 2_4:-63873910 | Msa0341980:CDS |
| ACTTCATCATGATTCACAAA+AGG | 0.507116 | 2_4:-63874589 | Msa0341980:CDS |
| ACTCAATCATCATCAACAAA+AGG | 0.509294 | 2_4:-63874331 | Msa0341980:CDS |
| AACTACCTTGTATTGAGAGA+GGG | 0.509993 | 2_4:+63874841 | Msa0341970:intron |
| CCTATGAAGATTCGGAAAAG+AGG | 0.512041 | 2_4:-63875052 | Msa0341980:CDS |
| ACTTAATCATCGTTCACAAA+AGG | 0.517591 | 2_4:-63874871 | Msa0341980:CDS |
| CATAAAGAAGATCAAGATGA+TGG | 0.521149 | 2_4:-63874108 | Msa0341980:CDS |
| GCTTAAGGAAGTGAGATCTT+CGG | 0.523012 | 2_4:+63874616 | Msa0341970:intron |
| CAAACCCCTCTCTCAATACA+AGG | 0.526964 | 2_4:-63874846 | Msa0341980:CDS |
| TGGGAATGGCAAGAATGAGC+TGG | 0.528852 | 2_4:-63873956 | Msa0341980:CDS |
| TCTTAAGAAAGTGAGATCTC+CGG | 0.549197 | 2_4:+63874358 | Msa0341970:intron |
| TCTTAAGAAAGTGAGATCTC+CGG | 0.549197 | 2_4:+63874898 | Msa0341970:intron |
| CCCGTGAAGAGTCTGAAAAG+AGG | 0.549764 | 2_4:-63874770 | Msa0341980:CDS |
| GAAAAGCATTGGGTGGTCAC+CGG | 0.556634 | 2_4:-63874917 | Msa0341980:CDS |
| GAAAAGCATTGGGTGGTCAC+CGG | 0.560535 | 2_4:-63874377 | Msa0341980:CDS |
| ACTACCTTGTATTGAGAAAG+GGG | 0.563148 | 2_4:+63874302 | Msa0341970:intron |
| AAAACCCCTTTCTCAATACA+AGG | 0.568454 | 2_4:-63874306 | Msa0341980:CDS |
| CCATACAAAGCATTCATGGT+TGG | 0.569961 | 2_4:+63874189 | Msa0341970:intron |
| CTATGAAGAGTCAGAAAAGA+GGG | 0.570873 | 2_4:-63874511 | Msa0341980:CDS |
| ATCTTCTTTATGATATTCAG+TGG | 0.577502 | 2_4:+63874119 | Msa0341970:intron |
| CCTATGAAGAGTCAGAAAAG+AGG | 0.578028 | 2_4:-63874512 | Msa0341980:CDS |
| TCTTTATGATATTCAGTGGG+AGG | 0.578179 | 2_4:+63874123 | Msa0341970:intron |
| TGGCAGAAGAGAGATAGAAG+AGG | 0.582371 | 2_4:-63874066 | Msa0341980:CDS |
| AAGCGATGAAGATGATGCTA+AGG | 0.582770 | 2_4:-63874463 | Msa0341980:CDS |
| GGGAATGGCAAGAATGAGCT+GGG | 0.589572 | 2_4:-63873955 | Msa0341980:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.590398 | 2_4:-63874457 | Msa0341980:CDS |
| ACTACCTTGTATTGAGAGAG+GGG | 0.593179 | 2_4:+63874842 | Msa0341970:intron |
| GTGTTGGTGAAACATCAAAT+GGG | 0.595282 | 2_4:-63873975 | Msa0341980:CDS |
| TAACTACCTTGTATTGAGAG+AGG | 0.601425 | 2_4:+63874840 | Msa0341970:intron |
| TCTTCTTTATGATATTCAGT+GGG | 0.603725 | 2_4:+63874120 | Msa0341970:intron |
| TAGTGATGAAGATGATGCTA+AGG | 0.613974 | 2_4:-63875003 | Msa0341980:CDS |
| AGCAATGGAAAAGCATTGGG+TGG | 0.615604 | 2_4:-63874924 | Msa0341980:CDS |
| AAGTGATGAAGATGATGCTA+AGG | 0.616457 | 2_4:-63874721 | Msa0341980:CDS |
| ATGGATAAAGATCATAAGCA+TGG | 0.623190 | 2_4:-63875086 | Msa0341980:CDS |
| ATGGTCACATGAGGACTCAC+CGG | 0.623316 | 2_4:-63874170 | Msa0341980:CDS |
| AGCAACGGAAAAGCATTGGG+TGG | 0.623901 | 2_4:-63874642 | Msa0341980:CDS |
| AGATCATAAGCATGATCATG+AGG | 0.630396 | 2_4:-63874538 | Msa0341980:CDS |
| GGTGAAACATCAAATGGGAA+TGG | 0.636070 | 2_4:-63873970 | Msa0341980:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.644459 | 2_4:-63874997 | Msa0341980:CDS |
| AGTAACGGAAAAGCATTGGG+TGG | 0.649033 | 2_4:-63874384 | Msa0341980:CDS |
| GTGTATTGGTAGTGTTGAGG+CGG | 0.666307 | 2_4:-63874037 | Msa0341980:CDS |
| AAAAGTTCTTGTCATAACGA+AGG | 0.694153 | 2_4:+63873998 | Msa0341970:intron |
| AAAGTGTATTGGTAGTGTTG+AGG | 0.694754 | 2_4:-63874040 | Msa0341980:CDS |
| ATGCTTTGTATGGTCACATG+AGG | 0.725028 | 2_4:-63874179 | Msa0341980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACAAGGTAGTTATAATA+GGG | - | chr2_4:63874124-63874143 | Msa0341980:CDS | 20.0% |
| !! | AATACAAGGTAGTAATAATA+GGG | - | chr2_4:63874664-63874683 | Msa0341980:CDS | 20.0% |
| !! | AATACAAGGTAGTTATAATA+GGG | - | chr2_4:63874124-63874143 | Msa0341980:CDS | 20.0% |
| !! | AATACAAGGTAGTAATAATA+GGG | - | chr2_4:63874664-63874683 | Msa0341980:CDS | 20.0% |
| ! | CAATACAAGGTAGTTATAAT+AGG | - | chr2_4:63874123-63874142 | Msa0341980:CDS | 25.0% |
| ! | TTTGATAAAGATAGTAAGCA+TGG | - | chr2_4:63874152-63874171 | Msa0341980:CDS | 25.0% |
| !!! | ACAAAAGGTTGATAATACTA+TGG | - | chr2_4:63874382-63874401 | Msa0341980:CDS | 25.0% |
| !! | TGTGGAAAAACTTTTAGTAA+CGG | - | chr2_4:63874557-63874576 | Msa0341980:CDS | 25.0% |
| ! | CAATACAAGGTAGTAATAAT+AGG | - | chr2_4:63874663-63874682 | Msa0341980:CDS | 25.0% |
| ! | TCTTCTTTATGATATTCAGT+GGG | + | chr2_4:63874839-63874858 | Msa0341970:intron | 25.0% |
| ! | ATCTTCTTTATGATATTCAG+TGG | + | chr2_4:63874840-63874859 | Msa0341970:intron | 25.0% |
| !! | AATAAACCTTTTCCTTTCTT+TGG | + | chr2_4:63875055-63875074 | Msa0341970:intron | 25.0% |
| ! | CAATACAAGGTAGTTATAAT+AGG | - | chr2_4:63874123-63874142 | Msa0341980:CDS | 25.0% |
| ! | TTTGATAAAGATAGTAAGCA+TGG | - | chr2_4:63874152-63874171 | Msa0341980:CDS | 25.0% |
| !!! | ACAAAAGGTTGATAATACTA+TGG | - | chr2_4:63874382-63874401 | Msa0341980:CDS | 25.0% |
| !! | TGTGGAAAAACTTTTAGTAA+CGG | - | chr2_4:63874557-63874576 | Msa0341980:CDS | 25.0% |
| ! | CAATACAAGGTAGTAATAAT+AGG | - | chr2_4:63874663-63874682 | Msa0341980:CDS | 25.0% |
| ! | TCTTCTTTATGATATTCAGT+GGG | + | chr2_4:63874839-63874858 | Msa0341970:intron | 25.0% |
| ! | ATCTTCTTTATGATATTCAG+TGG | + | chr2_4:63874840-63874859 | Msa0341970:intron | 25.0% |
| !! | AATAAACCTTTTCCTTTCTT+TGG | + | chr2_4:63875055-63875074 | Msa0341970:intron | 25.0% |
| ATGGATAAAGATCATAAGCA+TGG | - | chr2_4:63873870-63873889 | Msa0341980:CDS | 30.0% | |
| TGAGAAAACCTATGAAGATT+CGG | - | chr2_4:63873896-63873915 | Msa0341980:CDS | 30.0% | |
| !! | TTTTAGCAATGGAAAAGCAT+TGG | - | chr2_4:63874028-63874047 | Msa0341980:CDS | 30.0% |
| !! | TTTAGCAATGGAAAAGCATT+GGG | - | chr2_4:63874029-63874048 | Msa0341980:CDS | 30.0% |
| ACTTAATCATCGTTCACAAA+AGG | - | chr2_4:63874085-63874104 | Msa0341980:CDS | 30.0% | |
| ! | ACACATCAATGCAATTTTTG+TGG | - | chr2_4:63874281-63874300 | Msa0341980:CDS | 30.0% |
| ! | TGTGGAAAAACTTTTAGCAA+CGG | - | chr2_4:63874299-63874318 | Msa0341980:CDS | 30.0% |
| ACTTCATCATGATTCACAAA+AGG | - | chr2_4:63874367-63874386 | Msa0341980:CDS | 30.0% | |
| ! | TGATAATACTATGGCTAGTT+TGG | - | chr2_4:63874391-63874410 | Msa0341980:CDS | 30.0% |
| !! | TTTTAGTAACGGAAAAGCAT+TGG | - | chr2_4:63874568-63874587 | Msa0341980:CDS | 30.0% |
| !! | TTTAGTAACGGAAAAGCATT+GGG | - | chr2_4:63874569-63874588 | Msa0341980:CDS | 30.0% |
| ACTCAATCATCATCAACAAA+AGG | - | chr2_4:63874625-63874644 | Msa0341980:CDS | 30.0% | |
| TACTACCTTGTATTGAGAAA+GGG | + | chr2_4:63874658-63874677 | Msa0341970:intron | 30.0% | |
| TTACTACCTTGTATTGAGAA+AGG | + | chr2_4:63874659-63874678 | Msa0341970:intron | 30.0% | |
| GATGATGAAGAAGAAATTGA+TGG | - | chr2_4:63874704-63874723 | Msa0341980:CDS | 30.0% | |
| !! | GTCCTTTAAAATCTCTATTC+CGG | + | chr2_4:63874808-63874827 | Msa0341970:intron | 30.0% |
| CATAAAGAAGATCAAGATGA+TGG | - | chr2_4:63874848-63874867 | Msa0341980:CDS | 30.0% | |
| GTGATTTATCTTTGCCAAAA+TGG | - | chr2_4:63874870-63874889 | Msa0341980:CDS | 30.0% | |
| AAAAGTTCTTGTCATAACGA+AGG | + | chr2_4:63874961-63874980 | Msa0341970:intron | 30.0% | |
| ! | TATGACAAGAACTTTTGTGT+TGG | - | chr2_4:63874965-63874984 | Msa0341980:CDS | 30.0% |
| ATGGATAAAGATCATAAGCA+TGG | - | chr2_4:63873870-63873889 | Msa0341980:CDS | 30.0% | |
| TGAGAAAACCTATGAAGATT+CGG | - | chr2_4:63873896-63873915 | Msa0341980:CDS | 30.0% | |
| !! | TTTTAGCAATGGAAAAGCAT+TGG | - | chr2_4:63874028-63874047 | Msa0341980:CDS | 30.0% |
| !! | TTTAGCAATGGAAAAGCATT+GGG | - | chr2_4:63874029-63874048 | Msa0341980:CDS | 30.0% |
| ACTTAATCATCGTTCACAAA+AGG | - | chr2_4:63874085-63874104 | Msa0341980:CDS | 30.0% | |
| ! | ACACATCAATGCAATTTTTG+TGG | - | chr2_4:63874281-63874300 | Msa0341980:CDS | 30.0% |
| ! | TGTGGAAAAACTTTTAGCAA+CGG | - | chr2_4:63874299-63874318 | Msa0341980:CDS | 30.0% |
| ACTTCATCATGATTCACAAA+AGG | - | chr2_4:63874367-63874386 | Msa0341980:CDS | 30.0% | |
| ! | TGATAATACTATGGCTAGTT+TGG | - | chr2_4:63874391-63874410 | Msa0341980:CDS | 30.0% |
| !! | TTTTAGTAACGGAAAAGCAT+TGG | - | chr2_4:63874568-63874587 | Msa0341980:CDS | 30.0% |
| !! | TTTAGTAACGGAAAAGCATT+GGG | - | chr2_4:63874569-63874588 | Msa0341980:CDS | 30.0% |
| ACTCAATCATCATCAACAAA+AGG | - | chr2_4:63874625-63874644 | Msa0341980:CDS | 30.0% | |
| TACTACCTTGTATTGAGAAA+GGG | + | chr2_4:63874658-63874677 | Msa0341970:intron | 30.0% | |
| TTACTACCTTGTATTGAGAA+AGG | + | chr2_4:63874659-63874678 | Msa0341970:intron | 30.0% | |
| GATGATGAAGAAGAAATTGA+TGG | - | chr2_4:63874704-63874723 | Msa0341980:CDS | 30.0% | |
| !! | GTCCTTTAAAATCTCTATTC+CGG | + | chr2_4:63874808-63874827 | Msa0341970:intron | 30.0% |
| CATAAAGAAGATCAAGATGA+TGG | - | chr2_4:63874848-63874867 | Msa0341980:CDS | 30.0% | |
| GTGATTTATCTTTGCCAAAA+TGG | - | chr2_4:63874870-63874889 | Msa0341980:CDS | 30.0% | |
| AAAAGTTCTTGTCATAACGA+AGG | + | chr2_4:63874961-63874980 | Msa0341970:intron | 30.0% | |
| ! | TATGACAAGAACTTTTGTGT+TGG | - | chr2_4:63874965-63874984 | Msa0341980:CDS | 30.0% |
| ATTCGGAAAAGAGGATGAAA+AGG | - | chr2_4:63873913-63873932 | Msa0341980:CDS | 35.0% | |
| TAGTGATGAAGATGATGCTA+AGG | - | chr2_4:63873953-63873972 | Msa0341980:CDS | 35.0% | |
| ! | TGTGGGAAAACTTTTAGCAA+TGG | - | chr2_4:63874017-63874036 | Msa0341980:CDS | 35.0% |
| TCTTAAGAAAGTGAGATCTC+CGG | + | chr2_4:63874061-63874080 | Msa0341970:intron | 35.0% | |
| AACTACCTTGTATTGAGAGA+GGG | + | chr2_4:63874118-63874137 | Msa0341970:intron | 35.0% | |
| TAACTACCTTGTATTGAGAG+AGG | + | chr2_4:63874119-63874138 | Msa0341970:intron | 35.0% | |
| AGTCTGAAAAGAGGATAAAG+AGG | - | chr2_4:63874195-63874214 | Msa0341980:CDS | 35.0% | |
| AAGTGATGAAGATGATGCTA+AGG | - | chr2_4:63874235-63874254 | Msa0341980:CDS | 35.0% | |
| !! | TTTTAGCAACGGAAAAGCAT+TGG | - | chr2_4:63874310-63874329 | Msa0341980:CDS | 35.0% |
| !! | TTTAGCAACGGAAAAGCATT+GGG | - | chr2_4:63874311-63874330 | Msa0341980:CDS | 35.0% |
| CATGATGAAGTTTCTGCTTA+AGG | + | chr2_4:63874358-63874377 | Msa0341970:intron | 35.0% | |
| AGATCATAAGCATGATCATG+AGG | - | chr2_4:63874418-63874437 | Msa0341980:CDS | 35.0% | |
| CTATGAAGAGTCAGAAAAGA+GGG | - | chr2_4:63874445-63874464 | Msa0341980:CDS | 35.0% | |
| TCTTAAGAAAGTGAGATCTC+CGG | + | chr2_4:63874061-63874080 | Msa0341970:intron | 35.0% | |
| AAAACCCCTTTCTCAATACA+AGG | - | chr2_4:63874650-63874669 | Msa0341980:CDS | 35.0% | |
| ACTACCTTGTATTGAGAAAG+GGG | + | chr2_4:63874657-63874676 | Msa0341970:intron | 35.0% | |
| ! | TTTTTGCAGAGAGAACAAGT+TGG | + | chr2_4:63874740-63874759 | Msa0341970:intron | 35.0% |
| ! | CACCGGAATAGAGATTTTAA+AGG | - | chr2_4:63874803-63874822 | Msa0341980:CDS | 35.0% |
| TCTTTATGATATTCAGTGGG+AGG | + | chr2_4:63874836-63874855 | Msa0341970:intron | 35.0% | |
| ! | AGAAGAGGTAGAAAGTGTAT+TGG | - | chr2_4:63874905-63874924 | Msa0341980:CDS | 35.0% |
| !! | AAAGTGTATTGGTAGTGTTG+AGG | - | chr2_4:63874916-63874935 | Msa0341980:CDS | 35.0% |
| ! | TGTGTTGGTGAAACATCAAA+TGG | - | chr2_4:63874980-63874999 | Msa0341980:CDS | 35.0% |
| ! | GTGTTGGTGAAACATCAAAT+GGG | - | chr2_4:63874981-63875000 | Msa0341980:CDS | 35.0% |
| GAATGAGTCGTATGTTATAG+AGG | - | chr2_4:63875081-63875100 | Msa0341980:CDS | 35.0% | |
| ATTCGGAAAAGAGGATGAAA+AGG | - | chr2_4:63873913-63873932 | Msa0341980:CDS | 35.0% | |
| TAGTGATGAAGATGATGCTA+AGG | - | chr2_4:63873953-63873972 | Msa0341980:CDS | 35.0% | |
| ! | TGTGGGAAAACTTTTAGCAA+TGG | - | chr2_4:63874017-63874036 | Msa0341980:CDS | 35.0% |
| TCTTAAGAAAGTGAGATCTC+CGG | + | chr2_4:63874061-63874080 | Msa0341970:intron | 35.0% | |
| AACTACCTTGTATTGAGAGA+GGG | + | chr2_4:63874118-63874137 | Msa0341970:intron | 35.0% | |
| TAACTACCTTGTATTGAGAG+AGG | + | chr2_4:63874119-63874138 | Msa0341970:intron | 35.0% | |
| AGTCTGAAAAGAGGATAAAG+AGG | - | chr2_4:63874195-63874214 | Msa0341980:CDS | 35.0% | |
| AAGTGATGAAGATGATGCTA+AGG | - | chr2_4:63874235-63874254 | Msa0341980:CDS | 35.0% | |
| !! | TTTTAGCAACGGAAAAGCAT+TGG | - | chr2_4:63874310-63874329 | Msa0341980:CDS | 35.0% |
| !! | TTTAGCAACGGAAAAGCATT+GGG | - | chr2_4:63874311-63874330 | Msa0341980:CDS | 35.0% |
| CATGATGAAGTTTCTGCTTA+AGG | + | chr2_4:63874358-63874377 | Msa0341970:intron | 35.0% | |
| AGATCATAAGCATGATCATG+AGG | - | chr2_4:63874418-63874437 | Msa0341980:CDS | 35.0% | |
| CTATGAAGAGTCAGAAAAGA+GGG | - | chr2_4:63874445-63874464 | Msa0341980:CDS | 35.0% | |
| TCTTAAGAAAGTGAGATCTC+CGG | + | chr2_4:63874061-63874080 | Msa0341970:intron | 35.0% | |
| AAAACCCCTTTCTCAATACA+AGG | - | chr2_4:63874650-63874669 | Msa0341980:CDS | 35.0% | |
| ACTACCTTGTATTGAGAAAG+GGG | + | chr2_4:63874657-63874676 | Msa0341970:intron | 35.0% | |
| ! | TTTTTGCAGAGAGAACAAGT+TGG | + | chr2_4:63874740-63874759 | Msa0341970:intron | 35.0% |
| ! | CACCGGAATAGAGATTTTAA+AGG | - | chr2_4:63874803-63874822 | Msa0341980:CDS | 35.0% |
| TCTTTATGATATTCAGTGGG+AGG | + | chr2_4:63874836-63874855 | Msa0341970:intron | 35.0% | |
| ! | AGAAGAGGTAGAAAGTGTAT+TGG | - | chr2_4:63874905-63874924 | Msa0341980:CDS | 35.0% |
| !! | AAAGTGTATTGGTAGTGTTG+AGG | - | chr2_4:63874916-63874935 | Msa0341980:CDS | 35.0% |
| ! | TGTGTTGGTGAAACATCAAA+TGG | - | chr2_4:63874980-63874999 | Msa0341980:CDS | 35.0% |
| ! | GTGTTGGTGAAACATCAAAT+GGG | - | chr2_4:63874981-63875000 | Msa0341980:CDS | 35.0% |
| GAATGAGTCGTATGTTATAG+AGG | - | chr2_4:63875081-63875100 | Msa0341980:CDS | 35.0% | |
| ! | CCTCTTTTCCGAATCTTCAT+AGG | + | chr2_4:63873907-63873926 | Msa0341970:intron | 40.0% |
| CCTATGAAGATTCGGAAAAG+AGG | - | chr2_4:63873904-63873923 | Msa0341980:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | - | chr2_4:63873959-63873978 | Msa0341980:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | - | chr2_4:63873999-63874018 | Msa0341980:CDS | 40.0% | |
| CACATCAGTGCAATGTTTGT+GGG | - | chr2_4:63874000-63874019 | Msa0341980:CDS | 40.0% | |
| ACTACCTTGTATTGAGAGAG+GGG | + | chr2_4:63874117-63874136 | Msa0341970:intron | 40.0% | |
| ! | TCCTCTTTTCAGACTCTTCA+CGG | + | chr2_4:63874190-63874209 | Msa0341970:intron | 40.0% |
| GCTTAAGGAAGTGAGATCTT+CGG | + | chr2_4:63874343-63874362 | Msa0341970:intron | 40.0% | |
| ! | CCTCTTTTCTGACTCTTCAT+AGG | + | chr2_4:63874447-63874466 | Msa0341970:intron | 40.0% |
| CCTATGAAGAGTCAGAAAAG+AGG | - | chr2_4:63874444-63874463 | Msa0341980:CDS | 40.0% | |
| AGTCAGAAAAGAGGGTGAAA+AGG | - | chr2_4:63874453-63874472 | Msa0341980:CDS | 40.0% | |
| AAGCGATGAAGATGATGCTA+AGG | - | chr2_4:63874493-63874512 | Msa0341980:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | - | chr2_4:63873959-63873978 | Msa0341980:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | - | chr2_4:63873999-63874018 | Msa0341980:CDS | 40.0% | |
| ! | CCATACAAAGCATTCATGGT+TGG | + | chr2_4:63874770-63874789 | Msa0341970:intron | 40.0% |
| CCAACCATGAATGCTTTGTA+TGG | - | chr2_4:63874767-63874786 | Msa0341980:CDS | 40.0% | |
| ! | GTGACCATACAAAGCATTCA+TGG | + | chr2_4:63874774-63874793 | Msa0341970:intron | 40.0% |
| ATGCTTTGTATGGTCACATG+AGG | - | chr2_4:63874777-63874796 | Msa0341980:CDS | 40.0% | |
| !! | CTATCTCTCTTCTGCCATTT+TGG | + | chr2_4:63874887-63874906 | Msa0341970:intron | 40.0% |
| GGTGAAACATCAAATGGGAA+TGG | - | chr2_4:63874986-63875005 | Msa0341980:CDS | 40.0% | |
| AGTGATAAGCAGCCAAAGAA+AGG | - | chr2_4:63875040-63875059 | Msa0341980:CDS | 40.0% | |
| AAGCAGCCAAAGAAAGGAAA+AGG | - | chr2_4:63875046-63875065 | Msa0341980:CDS | 40.0% | |
| ! | CCTCTTTTCCGAATCTTCAT+AGG | + | chr2_4:63873907-63873926 | Msa0341970:intron | 40.0% |
| CCTATGAAGATTCGGAAAAG+AGG | - | chr2_4:63873904-63873923 | Msa0341980:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | - | chr2_4:63873959-63873978 | Msa0341980:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | - | chr2_4:63873999-63874018 | Msa0341980:CDS | 40.0% | |
| CACATCAGTGCAATGTTTGT+GGG | - | chr2_4:63874000-63874019 | Msa0341980:CDS | 40.0% | |
| ACTACCTTGTATTGAGAGAG+GGG | + | chr2_4:63874117-63874136 | Msa0341970:intron | 40.0% | |
| ! | TCCTCTTTTCAGACTCTTCA+CGG | + | chr2_4:63874190-63874209 | Msa0341970:intron | 40.0% |
| GCTTAAGGAAGTGAGATCTT+CGG | + | chr2_4:63874343-63874362 | Msa0341970:intron | 40.0% | |
| ! | CCTCTTTTCTGACTCTTCAT+AGG | + | chr2_4:63874447-63874466 | Msa0341970:intron | 40.0% |
| CCTATGAAGAGTCAGAAAAG+AGG | - | chr2_4:63874444-63874463 | Msa0341980:CDS | 40.0% | |
| AGTCAGAAAAGAGGGTGAAA+AGG | - | chr2_4:63874453-63874472 | Msa0341980:CDS | 40.0% | |
| AAGCGATGAAGATGATGCTA+AGG | - | chr2_4:63874493-63874512 | Msa0341980:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | - | chr2_4:63873959-63873978 | Msa0341980:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | - | chr2_4:63873999-63874018 | Msa0341980:CDS | 40.0% | |
| ! | CCATACAAAGCATTCATGGT+TGG | + | chr2_4:63874770-63874789 | Msa0341970:intron | 40.0% |
| CCAACCATGAATGCTTTGTA+TGG | - | chr2_4:63874767-63874786 | Msa0341980:CDS | 40.0% | |
| ! | GTGACCATACAAAGCATTCA+TGG | + | chr2_4:63874774-63874793 | Msa0341970:intron | 40.0% |
| ATGCTTTGTATGGTCACATG+AGG | - | chr2_4:63874777-63874796 | Msa0341980:CDS | 40.0% | |
| !! | CTATCTCTCTTCTGCCATTT+TGG | + | chr2_4:63874887-63874906 | Msa0341970:intron | 40.0% |
| GGTGAAACATCAAATGGGAA+TGG | - | chr2_4:63874986-63875005 | Msa0341980:CDS | 40.0% | |
| AGTGATAAGCAGCCAAAGAA+AGG | - | chr2_4:63875040-63875059 | Msa0341980:CDS | 40.0% | |
| AAGCAGCCAAAGAAAGGAAA+AGG | - | chr2_4:63875046-63875065 | Msa0341980:CDS | 40.0% | |
| !! | AGCAATGGAAAAGCATTGGG+TGG | - | chr2_4:63874032-63874051 | Msa0341980:CDS | 45.0% |
| CAAACCCCTCTCTCAATACA+AGG | - | chr2_4:63874110-63874129 | Msa0341980:CDS | 45.0% | |
| ! | CCTCTTTTCAGACTCTTCAC+GGG | + | chr2_4:63874189-63874208 | Msa0341970:intron | 45.0% |
| !! | AGTAACGGAAAAGCATTGGG+TGG | - | chr2_4:63874572-63874591 | Msa0341980:CDS | 45.0% |
| TGGCAGAAGAGAGATAGAAG+AGG | - | chr2_4:63874890-63874909 | Msa0341980:CDS | 45.0% | |
| !! | GTGTATTGGTAGTGTTGAGG+CGG | - | chr2_4:63874919-63874938 | Msa0341980:CDS | 45.0% |
| !! | AGCAATGGAAAAGCATTGGG+TGG | - | chr2_4:63874032-63874051 | Msa0341980:CDS | 45.0% |
| CAAACCCCTCTCTCAATACA+AGG | - | chr2_4:63874110-63874129 | Msa0341980:CDS | 45.0% | |
| ! | CCTCTTTTCAGACTCTTCAC+GGG | + | chr2_4:63874189-63874208 | Msa0341970:intron | 45.0% |
| !! | AGTAACGGAAAAGCATTGGG+TGG | - | chr2_4:63874572-63874591 | Msa0341980:CDS | 45.0% |
| TGGCAGAAGAGAGATAGAAG+AGG | - | chr2_4:63874890-63874909 | Msa0341980:CDS | 45.0% | |
| !! | GTGTATTGGTAGTGTTGAGG+CGG | - | chr2_4:63874919-63874938 | Msa0341980:CDS | 45.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | - | chr2_4:63874039-63874058 | Msa0341980:CDS | 50.0% |
| CCCGTGAAGAGTCTGAAAAG+AGG | - | chr2_4:63874186-63874205 | Msa0341980:CDS | 50.0% | |
| !! | AGCAACGGAAAAGCATTGGG+TGG | - | chr2_4:63874314-63874333 | Msa0341980:CDS | 50.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | - | chr2_4:63874039-63874058 | Msa0341980:CDS | 50.0% |
| ATGGTCACATGAGGACTCAC+CGG | - | chr2_4:63874786-63874805 | Msa0341980:CDS | 50.0% | |
| TGGGAATGGCAAGAATGAGC+TGG | - | chr2_4:63875000-63875019 | Msa0341980:CDS | 50.0% | |
| GGGAATGGCAAGAATGAGCT+GGG | - | chr2_4:63875001-63875020 | Msa0341980:CDS | 50.0% | |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | - | chr2_4:63874039-63874058 | Msa0341980:CDS | 50.0% |
| CCCGTGAAGAGTCTGAAAAG+AGG | - | chr2_4:63874186-63874205 | Msa0341980:CDS | 50.0% | |
| !! | AGCAACGGAAAAGCATTGGG+TGG | - | chr2_4:63874314-63874333 | Msa0341980:CDS | 50.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | - | chr2_4:63874039-63874058 | Msa0341980:CDS | 50.0% |
| ATGGTCACATGAGGACTCAC+CGG | - | chr2_4:63874786-63874805 | Msa0341980:CDS | 50.0% | |
| TGGGAATGGCAAGAATGAGC+TGG | - | chr2_4:63875000-63875019 | Msa0341980:CDS | 50.0% | |
| GGGAATGGCAAGAATGAGCT+GGG | - | chr2_4:63875001-63875020 | Msa0341980:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 63873870 | 63875108 | 63873870 | ID=Msa0341980;Name=Msa0341980 |
| chr2_4 | mRNA | 63873870 | 63875108 | 63873870 | ID=Msa0341980-mRNA-1;Parent=Msa0341980;Name=Msa0341980-mRNA-1;_AED=0.13;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|412 |
| chr2_4 | exon | 63873870 | 63875108 | 63873870 | ID=Msa0341980-mRNA-1:exon:20478;Parent=Msa0341980-mRNA-1 |
| chr2_4 | CDS | 63873870 | 63875108 | 63873870 | ID=Msa0341980-mRNA-1:cds;Parent=Msa0341980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
