AlfalfaGEDB | Msa0342510

M. sativa cultivar zhongmu-4 / Msa0342510

KEGG: -
GO: GO:0005575 GO:0016020
PFAM: PF00954.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0342510	XP_003622962.2	92.484	612	46	0	21	632	186	797	0.0	1172

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0342510	sp\|P17801\|KPRO_MAIZE	39.403	637	335	16	24	625	192	812	9.45e-140	441

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0342510	G7L299	92.484	612	46	0	21	632	186	797	0.0	1172

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0342510	MtrunA17_Chr7g0237351	92.484	612	46	0	21	632	186	797	1172
Msa0342510	MtrunA17_Chr7g0234561	86.371	609	83	0	21	629	126	734	1118
Msa0342510	MtrunA17_Chr7g0237391	80.890	607	116	0	23	629	187	793	1015
Msa0342510	MtrunA17_Chr4g0053161	79.967	609	122	0	21	629	205	813	1004
Msa0342510	MtrunA17_Chr7g0237341	65.742	613	203	6	21	631	185	792	832
Msa0342510	MtrunA17_Chr7g0237331	65.303	611	207	4	22	631	187	793	831
Msa0342510	MtrunA17_Chr3g0106201	57.749	613	247	8	21	625	179	787	706
Msa0342510	MtrunA17_Chr3g0106211	55.840	625	256	9	21	629	182	802	693
Msa0342510	MtrunA17_Chr3g0106161	56.770	613	253	8	21	625	18	626	691
Msa0342510	MtrunA17_Chr3g0106121	54.792	626	266	7	21	632	178	800	680

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0342510	AT5G24080.3	34.829	557	313	19	92	626	147	675	3.00e-81	280
Msa0342510	AT5G24080.1	34.829	557	313	19	92	626	147	675	3.00e-81	280
Msa0342510	AT4G00340.1	32.969	549	319	15	93	626	246	760	1.05e-80	280
Msa0342510	AT5G24080.2	34.829	557	313	19	92	626	274	802	1.76e-80	280
Msa0342510	AT1G34300.1	33.746	566	316	21	85	626	227	757	2.18e-79	276
Msa0342510	AT4G00340.2	32.353	544	308	14	93	626	246	739	2.50e-77	270
Msa0342510	AT5G35370.1	33.743	569	315	21	92	622	256	800	5.16e-73	259
Msa0342510	AT4G32300.1	43.082	318	166	6	314	626	458	765	3.40e-72	256
Msa0342510	AT2G19130.1	45.578	294	146	5	338	626	483	767	9.87e-72	254
Msa0342510	AT3G09010.1	43.087	311	154	10	336	637	32	328	9.08e-64	221

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Find 202 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTATGATATTGCCTT+AGG	0.458438	3_1:+420061	Msa0342510:CDS
AAAGAGGAGTAAATGTTGGG+TGG	0.598398	3_1:+420453	Msa0342510:CDS
AAAGTGGATGTTTATAGTTA+TGG	0.343640	3_1:+420319	Msa0342510:CDS
AAAGTGGTGTTGGAGGTTGT+TGG	0.483912	3_1:+421736	Msa0342510:CDS
AAATCCACTCTCATGAACCG+TGG	0.715875	3_1:+422365	Msa0342510:CDS
AAATGAAGAACCATAATGAT+TGG	0.454359	3_1:+419195	Msa0342510:CDS
AACCAACAAGTCATTTGTTG+AGG	0.526878	3_1:+419582	Msa0342510:CDS
AACCATAAGACCAATCATTA+TGG	0.354011	3_1:-419205	None:intergenic
AACCATAATGATTGGTCTTA+TGG	0.254741	3_1:+419203	Msa0342510:CDS
AACCATACCGTAATCATATG+TGG	0.533358	3_1:-418979	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAACTTAACAAAAAAGATGG+TGG	-	chr3_1:418870-418889	None:intergenic	30.0%
TGCCAACTTAACAAAAAAGA+TGG	-	chr3_1:418873-418892	None:intergenic	30.0%
TAGTACTAGAATTGCTTTGT+TGG	+	chr3_1:418914-418933	Msa0342510:CDS	30.0%
TATGCAAAGAAGATTAACCA+TGG	+	chr3_1:419001-419020	Msa0342510:CDS	30.0%
AATATTACCATCAGATTCCA+TGG	-	chr3_1:419021-419040	None:intergenic	30.0%
TAGAAAATTGGTATGTGTCA+TGG	+	chr3_1:419066-419085	Msa0342510:CDS	30.0%
TTGTAGCTATGATGCTAAAA+AGG	+	chr3_1:419142-419161	Msa0342510:CDS	30.0%
TGTAGCTATGATGCTAAAAA+GGG	+	chr3_1:419143-419162	Msa0342510:CDS	30.0%
AACCATAAGACCAATCATTA+TGG	-	chr3_1:419208-419227	None:intergenic	30.0%
ATTCCAATACTCATATGAAG+AGG	+	chr3_1:419382-419401	Msa0342510:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	418542	422841	418542	ID=Msa0342510;Name=Msa0342510
chr3_1	mRNA	418542	422841	418542	ID=Msa0342510-mRNA-1;Parent=Msa0342510;Name=Msa0342510-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|0\|0\|0.25\|1\|1\|4\|0\|973
chr3_1	exon	418542	418604	418542	ID=Msa0342510-mRNA-1:exon:21;Parent=Msa0342510-mRNA-1
chr3_1	exon	418798	420633	418798	ID=Msa0342510-mRNA-1:exon:22;Parent=Msa0342510-mRNA-1
chr3_1	exon	421735	421803	421735	ID=Msa0342510-mRNA-1:exon:23;Parent=Msa0342510-mRNA-1
chr3_1	exon	421888	422841	421888	ID=Msa0342510-mRNA-1:exon:24;Parent=Msa0342510-mRNA-1
chr3_1	CDS	418542	418604	418542	ID=Msa0342510-mRNA-1:cds;Parent=Msa0342510-mRNA-1
chr3_1	CDS	418798	420633	418798	ID=Msa0342510-mRNA-1:cds;Parent=Msa0342510-mRNA-1
chr3_1	CDS	421735	421803	421735	ID=Msa0342510-mRNA-1:cds;Parent=Msa0342510-mRNA-1
chr3_1	CDS	421888	422841	421888	ID=Msa0342510-mRNA-1:cds;Parent=Msa0342510-mRNA-1

Gene Sequence

>Msa0342510

ATGCAAAATAGTTCCAAATTAATGCTTGGTTATACAAGGCCAGTGGAGAAAGCAAGTATTGAATTGTTCTTTGATGATAACAATGTTATTCGTCTCGATTATGATGGTCCTGATGTTTCAAGCACATATTGGCCACCATCTTTTTTGTTAAGTTGGCAAGCTGGAAGGACCAATTACAATAGTACTAGAATTGCTTTGTTGGATTCTCTTGGAAAGTTCATATCATCTGATAATTACGGTTTTTCCACATATGATTACGGTATGGTTATGCAAAGAAGATTAACCATGGAATCTGATGGTAATATTCGAGTTTACAGCCGACGAAATTTGTTAGAAAATTGGTATGTGTCATGGCAAGTCATATCTGACACCTGCCTCATTCATGGAATTTGTGGTGCAAATAGTGCTTGTAGCTATGATGCTAAAAAGGGTAAGAAATGCTCTTGTTTGCCAGGGTATAAAATGAAGAACCATAATGATTGGTCTTATGGTTGTGAACCTATGTTTGATTTAACTTGCAATAAAAGTGAGTCTACCTTTTTAAAATTGCATGGTTTTGAGTTCTACGGCTATGACAGTAATTTTTTTCAAAATAGTACCTACGAAAAATGTGAGAGTTCATGTTTACAAGCTTGTAACTGTACAGGATTCCAATACTCATATGAAGAGGACCAAAACATTTTCCAATGCTATACAAAGCTACAATTGCTAAATGGGAGGCATTCCCCAAGTTTTATTGGAAAAACATTCTTGAGACTTCCAAAACATAATAACTTCTCTAAAGAAGAGTCTATGAGTGTAACAGATAGTGTTTGTTTGGTTCAGCTTCACAAAGACTTTGTCAGAAAACCAACAAGTCATTTGTTGAGGTTTTTTCTGTGGCTTTCAATCACAATTGCTGGCTTGGAATCCTTTTTCTTTGTTGTGGTTTGTTGTTTTTTAATCAAGACCAAGAAAAAGTCTTATGGAGATCGACATAACTATCATCATGCATTATTGGGATTTAGAAGATATAGTTACTCTGAGTTAAAGGCAGCAACAAAGAATTTCAGTAACGAGATTGGAAGAGGTGGAGGAGGGATTGTATATAGAGGTACGTTGCCAGATCAAAGACATGCAGCAATAAAGAGATTGAATGAAGCAAAACAAGGAGAAGGAGAATTTCTTGCCGAAGTAAGCATCATTGGACGACTTAATCACATGAACTTGATTGAAATGTGGGGATATTGTGCCGAAGGTAAGCATAGACTTTTGGTATATGAGTACATGGAAAATGGATCTTTAGCTGAAAAGCTTTCATCTAAAACCAACACACTAGATTGGAGTAAAAGGTATGATATTGCCTTAGGAACAGCTAGAGTTCTTGCTTATCTACATGAAGAATGTTTGGAATGGATTTTGCATTGTGATATAAAGCCTCAAAATATACTTCTTGATTCTAATTTTCAACCCAAGTTAGCAGATTTTGGATTGTCTAAACTAAAAAGCAGAAACAATCTTAATAATAAATCAGAATTCTCAATGATTAGAGGAACAAGAGGATATATGGCCCCTGAATGGATTTCCAATTTACCAATAACATCTAAAGTGGATGTTTATAGTTATGGGGTTGTTGTGTTGGAGATGGTAACCGGAAAGAGTCCAACAATGATGAATGTAGAAGGAGTTGATGAAGAAGTTGCATACAATGGAAGGTTGATTAATTGGGTAAGAGAGAAAAAGAGGAGTAAATGTTGGGTGGAAGAAATTATGGATCCTAAAATTGGAACTAATTGTGATTCAAGTAAGATGGAAATTTTGGCTAAAGTTGCTTTGGAGTGTGTAGAGGTAGATAGAAATATTAGGCCTAGTATGAGTCAGGTGGTTGAGAAGCTTCAACGAAATGAAATAGATTCCTGGGAAAGTGGTGTTGGAGGTTGTTGGTTGACAGAGATGGTTTTTGGTATAGGGTGTTGGTTGCTAGGTATGGAGAGGAGGGTGAGAGTTGGTTCTCAGAGAGGGGTGTCGAGAAAGGTGGGAGATGGGGCAGCCACTCTTTTTTGGCGTGACCGGTGGTTAGAGGATGTTCCCCTTTGTCAGCGCTTTGGTCGTTTGTTCGAGATAGCGGAGGACAAGTCGATTTCAGTAGCATCGATGTTCTTTTTAGGTTGGGATGAGGGGGGTGAGGCGTGGAAGTGGAGGAGGAGGTTGTGGGCGTGGGAGGAGGAGTTGGTAGCAGAGTGTAGGCTGTTACTTGCTAATGTCACTTTGCAGATAAATGTTTCAGATACATGGCTTTGGCACCCAAATACTACAGGGGGCTATTCAGTTCGTTCAGGTTACCAGACCCTCTCTGCTCAGATTCCTTCGGTGTTAGATGATTCAGAGAAACTTATATGGCACTCTCAGGTTCCATCAAAGGTTTCTATCTTAGCTTGGTGGTTGCTTCGAGACAGGTTACCAACAAAATCCACTCTCATGAACCGTGGCATTACTCATGTGGATGACTCTCTTTGTGTGGCGGGCTGCGGTCAAATTGAAAGCGCGCAACACTTGTTTATTAATTGTAGTTTTTTTGGCTCTCTTTGGCAGCATGTCAGATTTTGGCTTGGTCTTTCCGTTGTTGATCAGAACGTCCCAAGCATCCACTTCTCTCAGTTTACAAATTACTTGGGTGGTAGGAGGAGTTGTCGATCATTTCTTCAGCTTTTGTGGCTTCTTTGTGTGTGGCTCATATGGAAAGAACGTAATAATAGAATTTTTAATAATGTTCATTCTTCCATTATGGAGCTTTCGGAAAAAGTTAAGTTTCACGCTTATTGGTGGTATAATGCATCTTTTGTGTACGGATGCGAGCAGTGGCGGTCGAACCCTTTGTGTTGTTTGGGTATCGGCCATTGTTGGTCCTTGTACATATTTGTCAGACATCTTGTTGTTTTTTAG

Protein sequence

>Msa0342510

MQNSSKLMLGYTRPVEKASIELFFDDNNVIRLDYDGPDVSSTYWPPSFLLSWQAGRTNYNSTRIALLDSLGKFISSDNYGFSTYDYGMVMQRRLTMESDGNIRVYSRRNLLENWYVSWQVISDTCLIHGICGANSACSYDAKKGKKCSCLPGYKMKNHNDWSYGCEPMFDLTCNKSESTFLKLHGFEFYGYDSNFFQNSTYEKCESSCLQACNCTGFQYSYEEDQNIFQCYTKLQLLNGRHSPSFIGKTFLRLPKHNNFSKEESMSVTDSVCLVQLHKDFVRKPTSHLLRFFLWLSITIAGLESFFFVVVCCFLIKTKKKSYGDRHNYHHALLGFRRYSYSELKAATKNFSNEIGRGGGGIVYRGTLPDQRHAAIKRLNEAKQGEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAEKLSSKTNTLDWSKRYDIALGTARVLAYLHEECLEWILHCDIKPQNILLDSNFQPKLADFGLSKLKSRNNLNNKSEFSMIRGTRGYMAPEWISNLPITSKVDVYSYGVVVLEMVTGKSPTMMNVEGVDEEVAYNGRLINWVREKKRSKCWVEEIMDPKIGTNCDSSKMEILAKVALECVEVDRNIRPSMSQVVEKLQRNEIDSWESGVGGCWLTEMVFGIGCWLLGMERRVRVGSQRGVSRKVGDGAATLFWRDRWLEDVPLCQRFGRLFEIAEDKSISVASMFFLGWDEGGEAWKWRRRLWAWEEELVAECRLLLANVTLQINVSDTWLWHPNTTGGYSVRSGYQTLSAQIPSVLDDSEKLIWHSQVPSKVSILAWWLLRDRLPTKSTLMNRGITHVDDSLCVAGCGQIESAQHLFINCSFFGSLWQHVRFWLGLSVVDQNVPSIHFSQFTNYLGGRRSCRSFLQLLWLLCVWLIWKERNNRIFNNVHSSIMELSEKVKFHAYWWYNASFVYGCEQWRSNPLCCLGIGHCWSLYIFVRHLVVF*