AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0343060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343060 MtrunA17_Chr5g0402111 79.787 188 31 2 114 294 87 274 7.97e-104 305
Msa0343060 MtrunA17_Chr5g0402091 64.021 189 59 2 115 294 89 277 2.83e-76 236
Msa0343060 MtrunA17_Chr8g0375141 56.757 185 69 3 114 289 124 306 3.58e-65 209
Msa0343060 MtrunA17_Chr4g0052981 56.216 185 70 3 114 289 85 267 4.05e-65 207
Msa0343060 MtrunA17_Chr4g0052961 55.978 184 70 3 114 288 122 303 3.69e-64 206
Msa0343060 MtrunA17_Chr5g0438991 77.528 89 16 2 1 89 868 952 1.83e-39 147
Msa0343060 MtrunA17_Chr6g0456861 75.862 87 19 1 1 87 671 755 3.91e-39 145
Msa0343060 MtrunA17_Chr3g0133461 75.281 89 18 2 1 89 1237 1321 4.19e-38 143
Msa0343060 MtrunA17_Chr3g0138411 73.034 89 20 2 1 89 1100 1184 8.88e-38 142
Msa0343060 MtrunA17_Chr2g0322401 41.954 174 89 4 116 282 88 256 5.73e-33 125
Msa0343060 MtrunA17_Chr3g0130151 37.079 178 103 4 114 284 327 502 4.37e-32 125
Msa0343060 MtrunA17_Chr2g0288841 39.106 179 96 6 116 287 87 259 1.25e-31 122
Msa0343060 MtrunA17_Chr2g0276831 33.333 198 103 5 114 282 91 288 2.48e-31 120
Msa0343060 MtrunA17_Chr4g0025041 40.113 177 91 5 116 285 84 252 3.82e-31 120
Msa0343060 MtrunA17_Chr8g0386981 38.068 176 100 4 114 282 491 664 9.04e-31 121
Msa0343060 MtrunA17_Chr8g0384301 34.409 186 113 4 114 292 382 565 5.29e-30 119
Msa0343060 MtrunA17_Chr1g0202831 36.932 176 102 4 114 282 494 667 4.66e-29 116
Msa0343060 MtrunA17_Chr5g0424501 38.650 163 89 4 128 282 286 445 1.20e-28 114
Msa0343060 MtrunA17_Chr3g0115171 37.654 162 90 4 129 282 378 536 1.03e-27 112
Msa0343060 MtrunA17_Chr5g0424581 38.037 163 90 4 128 282 219 378 1.87e-27 110
Msa0343060 MtrunA17_Chr5g0424651 38.037 163 90 4 128 282 415 574 5.80e-27 110
Msa0343060 MtrunA17_Chr4g0051191 37.576 165 92 4 126 282 256 417 9.88e-27 108
Msa0343060 MtrunA17_Chr7g0272841 35.556 180 103 5 115 283 155 332 4.29e-26 107
Msa0343060 MtrunA17_Chr5g0402601 31.892 185 110 4 116 287 457 638 1.14e-25 106
Msa0343060 MtrunA17_Chr3g0133541 31.746 189 113 5 116 291 392 577 1.68e-25 106
Msa0343060 MtrunA17_Chr5g0424531 36.810 163 92 4 128 282 110 269 1.16e-24 100
Msa0343060 MtrunA17_Chr1g0205931 35.556 180 103 5 115 283 142 319 1.86e-24 103
Msa0343060 MtrunA17_Chr4g0038091 32.275 189 121 2 106 288 93 280 1.85e-21 94.7
Msa0343060 MtrunA17_Chr4g0038501 31.892 185 119 2 106 284 93 276 1.87e-21 94.7
Msa0343060 MtrunA17_Chr5g0430501 36.000 175 97 6 115 282 97 263 4.01e-21 93.2
Msa0343060 MtrunA17_Chr4g0000031 48.235 85 37 2 3 87 1602 1679 3.90e-20 90.9
Msa0343060 MtrunA17_Chr4g0000481 31.325 166 99 5 131 282 175 339 9.11e-17 79.7
Msa0343060 MtrunA17_Chr6g0449691 31.915 188 113 5 114 290 165 348 1.13e-16 80.1
Msa0343060 MtrunA17_Chr5g0419441 30.270 185 104 6 114 282 318 493 1.74e-16 79.7
Msa0343060 MtrunA17_Chr2g0299991 29.231 195 119 5 114 290 149 342 2.30e-15 75.5
Msa0343060 MtrunA17_Chr2g0317001 30.114 176 112 5 115 282 95 267 5.21e-15 75.1
Msa0343060 MtrunA17_Chr6g0487231 30.058 173 103 3 131 287 164 334 5.80e-15 74.3
Msa0343060 MtrunA17_Chr2g0326531 29.814 161 104 4 129 282 222 380 5.05e-14 71.6
Msa0343060 MtrunA17_Chr1g0170551 28.090 178 119 4 116 287 88 262 7.36e-14 72.0
Msa0343060 MtrunA17_Chr4g0070851 27.979 193 122 5 114 290 149 340 1.06e-13 70.5
Msa0343060 MtrunA17_Chr6g0450571 29.825 171 99 7 129 282 111 277 7.05e-13 68.9
Msa0343060 MtrunA17_Chr6g0479211 29.474 190 116 6 114 287 137 324 8.17e-13 67.8
Msa0343060 MtrunA17_Chr2g0286501 31.492 181 106 6 115 281 125 301 1.47e-12 68.2
Msa0343060 MtrunA17_Chr5g0432491 24.806 258 161 9 49 282 30 278 1.58e-12 67.4
Msa0343060 MtrunA17_Chr3g0107051 25.221 226 144 8 76 282 56 275 1.81e-12 67.4
Msa0343060 MtrunA17_Chr7g0258051 27.933 179 112 6 115 282 98 270 2.00e-12 67.4
Msa0343060 MtrunA17_Chr1g0211611 25.767 163 114 2 114 270 379 540 3.53e-12 66.6
Msa0343060 MtrunA17_Chr1g0190831 28.249 177 114 5 115 282 86 258 5.38e-12 66.2
Msa0343060 MtrunA17_Chr7g0260191 27.933 179 112 6 115 282 86 258 9.70e-12 65.5
Msa0343060 MtrunA17_Chr1g0197721 29.016 193 113 6 115 286 133 322 1.12e-11 65.1
Msa0343060 MtrunA17_Chr5g0401281 45.763 59 31 1 22 79 279 337 1.24e-11 64.7
Msa0343060 MtrunA17_Chr7g0244521 29.577 142 88 5 115 246 94 233 1.33e-11 64.7
Msa0343060 MtrunA17_Chr4g0008561 26.111 180 120 5 115 283 100 277 2.40e-11 64.3
Msa0343060 MtrunA17_Chr4g0030151 26.341 205 114 7 121 289 129 332 2.58e-11 63.5
Msa0343060 MtrunA17_Chr4g0025671 28.249 177 114 6 115 282 90 262 4.85e-11 63.5
Msa0343060 MtrunA17_Chr3g0115051 25.414 181 116 6 121 283 478 657 6.33e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343060 AT3G50310.1 41.667 252 119 7 64 287 23 274 1.12e-51 173
Msa0343060 AT4G36950.1 47.514 181 82 3 114 283 88 266 7.41e-51 171
Msa0343060 AT5G67080.1 46.632 193 86 6 116 293 91 281 9.56e-50 168
Msa0343060 AT5G55090.2 41.176 187 98 5 114 292 146 328 9.52e-37 137
Msa0343060 AT5G55090.1 41.176 187 98 5 114 292 84 266 9.56e-37 136
Msa0343060 AT4G26890.1 39.444 180 97 3 114 286 83 257 5.11e-36 134
Msa0343060 AT1G05100.1 37.811 201 113 3 96 286 69 267 4.44e-35 129
Msa0343060 AT2G32510.1 38.298 188 101 4 116 290 85 270 7.15e-35 130
Msa0343060 AT1G63700.1 35.754 179 106 4 114 285 483 659 8.48e-31 122
Msa0343060 AT1G63700.2 35.754 179 106 4 114 285 483 659 8.48e-31 122
Msa0343060 AT1G07150.2 38.182 165 94 3 131 289 110 272 1.60e-30 120
Msa0343060 AT1G07150.1 38.182 165 94 3 131 289 124 286 1.90e-30 120
Msa0343060 AT4G08500.1 39.024 164 88 4 128 282 427 587 5.45e-29 116
Msa0343060 AT1G53570.4 33.333 186 115 4 114 292 297 480 2.04e-28 115
Msa0343060 AT1G53570.2 33.333 186 115 4 114 292 297 480 2.06e-28 115
Msa0343060 AT1G53570.3 33.333 186 115 4 114 292 297 480 2.06e-28 115
Msa0343060 AT1G53570.1 33.333 186 115 4 114 292 297 480 2.21e-28 114
Msa0343060 AT1G53570.6 33.333 186 115 4 114 292 297 480 2.40e-28 114
Msa0343060 AT1G53570.7 33.333 186 115 4 114 292 297 480 2.42e-28 114
Msa0343060 AT4G12020.5 37.037 162 93 3 128 283 1645 1803 2.72e-28 115
Msa0343060 AT4G12020.4 37.037 162 93 3 128 283 1712 1870 3.06e-28 115
Msa0343060 AT4G12020.2 37.037 162 93 3 128 283 1720 1878 3.18e-28 115
Msa0343060 AT2G30040.1 37.079 178 103 4 125 295 108 283 7.34e-28 112
Msa0343060 AT1G54960.1 34.555 191 113 5 115 295 155 343 2.48e-26 108
Msa0343060 AT1G54960.2 34.555 191 113 5 115 295 155 343 2.48e-26 108
Msa0343060 AT4G12020.10 36.420 162 78 4 128 283 1712 1854 4.82e-26 108
Msa0343060 AT4G12020.3 36.420 162 78 4 128 283 1720 1862 4.82e-26 108
Msa0343060 AT1G09000.2 36.316 190 109 5 115 294 156 343 1.08e-25 107
Msa0343060 AT1G09000.1 36.316 190 109 5 115 294 156 343 1.35e-25 107
Msa0343060 AT4G08480.1 36.970 165 90 5 128 282 595 755 2.03e-25 106
Msa0343060 AT3G06030.1 35.196 179 104 5 115 283 155 331 3.35e-25 105
Msa0343060 AT4G08470.3 35.366 164 94 4 128 282 315 475 2.49e-24 102
Msa0343060 AT4G08470.1 35.366 164 94 4 128 282 397 557 3.84e-24 102
Msa0343060 AT3G46160.1 35.519 183 105 6 113 282 150 332 1.18e-23 99.8
Msa0343060 AT3G46140.1 34.043 188 105 5 114 282 182 369 2.58e-23 98.6
Msa0343060 AT5G66850.2 30.556 180 109 4 116 282 431 607 2.71e-23 100
Msa0343060 AT5G66850.1 30.556 180 109 4 116 282 431 607 3.05e-23 100
Msa0343060 AT3G45670.1 32.308 195 113 5 114 289 178 372 1.13e-22 97.1
Msa0343060 AT2G41930.1 30.769 208 109 7 105 286 82 280 2.32e-22 95.5
Msa0343060 AT2G42550.1 34.524 168 95 5 128 282 109 274 1.33e-21 93.6
Msa0343060 AT3G13530.1 32.240 183 117 2 106 282 93 274 3.72e-21 94.4
Msa0343060 AT1G53570.5 28.889 180 105 3 114 292 297 454 5.74e-21 93.2
Msa0343060 AT3G07980.1 32.787 183 116 2 106 282 93 274 6.29e-21 93.6
Msa0343060 AT3G07980.2 32.787 183 116 2 106 282 93 274 6.51e-21 93.6
Msa0343060 AT1G79000.1 48.235 85 37 2 3 87 1590 1667 9.94e-21 92.8
Msa0343060 AT1G79000.3 48.235 85 37 2 3 87 1566 1643 1.02e-20 92.8
Msa0343060 AT1G79000.2 48.235 85 37 2 3 87 1590 1667 1.07e-20 92.8
Msa0343060 AT2G05060.1 33.526 173 97 5 128 288 116 282 2.73e-20 89.4
Msa0343060 AT1G16710.1 47.059 85 38 2 3 87 1599 1676 1.82e-19 89.4
Msa0343060 AT1G16710.3 47.059 85 38 2 3 87 1573 1650 1.85e-19 89.4
Msa0343060 AT1G16710.10 47.059 85 38 2 3 87 1573 1650 1.85e-19 89.4
Msa0343060 AT1G16710.8 47.059 85 38 2 3 87 1573 1650 1.85e-19 89.4
Msa0343060 AT1G16710.7 47.059 85 38 2 3 87 1573 1650 1.85e-19 89.4
Msa0343060 AT1G16710.2 47.059 85 38 2 3 87 1570 1647 1.86e-19 89.4
Msa0343060 AT1G16710.6 47.059 85 38 2 3 87 1534 1611 1.98e-19 89.0
Msa0343060 AT1G16710.4 47.059 85 38 2 3 87 1534 1611 1.98e-19 89.0
Msa0343060 AT1G16710.5 47.059 85 38 2 3 87 1534 1611 1.98e-19 89.0
Msa0343060 AT3G45790.1 34.104 173 95 6 114 267 182 354 2.49e-19 87.4
Msa0343060 AT5G12090.1 30.387 181 111 6 114 282 116 293 8.09e-19 85.9
Msa0343060 AT5G27510.1 32.044 181 107 6 116 282 91 269 2.46e-18 83.6
Msa0343060 AT2G41920.1 32.308 195 95 8 115 282 94 278 5.01e-18 83.2
Msa0343060 AT3G15220.1 30.168 179 114 5 115 285 95 270 5.32e-18 84.7
Msa0343060 AT5G40440.6 33.333 183 109 4 114 286 146 325 5.71e-18 84.3
Msa0343060 AT5G40440.3 33.333 183 109 4 114 286 146 325 5.71e-18 84.3
Msa0343060 AT5G40440.2 33.333 183 109 4 114 286 146 325 5.71e-18 84.3
Msa0343060 AT5G40440.5 33.333 183 109 4 114 286 82 261 6.31e-18 84.0
Msa0343060 AT5G40440.4 33.333 183 109 4 114 286 164 343 8.12e-18 84.0
Msa0343060 AT5G40440.1 33.333 183 109 4 114 286 164 343 8.12e-18 84.0
Msa0343060 AT2G34290.1 30.732 205 110 8 99 282 71 264 1.26e-17 81.3
Msa0343060 AT4G26070.2 28.571 252 152 8 55 287 91 333 1.79e-17 82.0
Msa0343060 AT4G26070.3 28.571 252 152 8 55 287 91 333 1.79e-17 82.0
Msa0343060 AT5G18700.1 31.429 175 110 5 115 281 80 252 2.09e-17 83.2
Msa0343060 AT4G26070.4 28.571 252 152 8 55 287 90 332 2.60e-17 81.6
Msa0343060 AT4G26070.5 28.571 252 152 8 55 287 78 320 2.61e-17 81.3
Msa0343060 AT1G69220.2 30.055 183 107 5 114 282 301 476 6.81e-17 81.3
Msa0343060 AT1G69220.1 30.055 183 107 5 114 282 328 503 7.70e-17 81.3
Msa0343060 AT1G53165.2 30.726 179 113 5 115 285 95 270 6.41e-16 78.6
Msa0343060 AT1G53165.1 30.726 179 113 5 115 285 95 270 6.82e-16 78.2
Msa0343060 AT1G53165.3 30.726 179 113 5 115 285 95 270 6.92e-16 78.2
Msa0343060 AT3G10540.1 29.534 193 112 6 115 286 127 316 8.20e-16 77.8
Msa0343060 AT2G41910.1 29.744 195 110 6 115 287 92 281 1.30e-15 76.6
Msa0343060 AT2G18530.1 28.090 178 94 5 114 282 34 186 1.70e-15 74.3
Msa0343060 AT5G04510.2 29.016 193 113 6 115 286 126 315 2.45e-15 76.3
Msa0343060 AT5G04510.1 29.016 193 113 6 115 286 126 315 3.07e-15 76.3
Msa0343060 AT4G04632.1 38.776 98 56 2 193 286 1 98 3.22e-15 70.9
Msa0343060 AT5G27790.1 28.000 225 119 9 99 294 90 300 6.04e-15 74.3
Msa0343060 AT3G45240.2 32.317 164 102 4 127 283 209 370 6.89e-15 74.7
Msa0343060 AT3G45240.1 32.317 164 102 4 127 283 209 370 6.89e-15 74.7
Msa0343060 AT5G60550.1 32.121 165 101 5 127 282 208 370 1.24e-14 73.9
Msa0343060 AT3G21220.2 29.167 168 100 5 131 282 161 325 3.80e-14 72.4
Msa0343060 AT3G21220.1 29.167 168 100 5 131 282 161 325 3.80e-14 72.4
Msa0343060 AT5G56580.1 30.481 187 113 5 116 287 152 336 3.94e-14 72.4
Msa0343060 AT1G50240.3 28.249 177 118 4 116 286 87 260 6.58e-14 72.8
Msa0343060 AT1G50240.2 28.249 177 118 4 116 286 87 260 6.58e-14 72.8
Msa0343060 AT2G30360.1 27.602 221 134 9 82 282 63 277 9.14e-14 71.6
Msa0343060 AT4G26070.1 29.282 181 113 5 55 226 91 265 9.90e-14 70.9
Msa0343060 AT4G29810.2 28.421 190 115 5 114 286 158 343 1.02e-13 71.2
Msa0343060 AT5G14720.1 29.825 171 99 7 129 282 111 277 1.04e-13 71.6
Msa0343060 AT5G14720.2 29.825 171 99 7 129 282 111 277 1.04e-13 71.6
Msa0343060 AT4G29810.1 28.877 187 112 5 114 283 149 331 1.09e-13 70.9
Msa0343060 AT4G10730.1 29.143 175 103 7 129 286 142 312 2.02e-12 67.8
Msa0343060 AT4G10730.2 29.143 175 103 7 129 286 122 292 2.10e-12 67.8
Msa0343060 AT5G28290.3 28.249 177 114 5 115 282 86 258 2.28e-12 67.8
Msa0343060 AT5G28290.1 28.090 178 115 5 114 282 85 258 2.37e-12 67.4
Msa0343060 AT5G28290.2 28.090 178 115 5 114 282 85 258 2.37e-12 67.4
Msa0343060 AT1G67220.1 37.975 79 46 2 1 78 1281 1357 4.36e-12 67.0
Msa0343060 AT2G37840.1 27.072 181 119 5 115 284 93 271 5.16e-12 66.6
Msa0343060 AT1G79640.1 28.655 171 101 7 129 282 108 274 5.27e-12 66.6
Msa0343060 AT1G79640.5 28.655 171 101 7 129 282 111 277 5.37e-12 66.6
Msa0343060 AT1G79640.6 28.655 171 101 7 129 282 108 274 5.55e-12 66.6
Msa0343060 AT1G79640.2 28.655 171 101 7 129 282 108 274 5.56e-12 66.6
Msa0343060 AT1G79640.4 28.655 171 101 7 129 282 108 274 5.56e-12 66.6
Msa0343060 AT1G79640.3 28.655 171 101 7 129 282 108 274 5.56e-12 66.6
Msa0343060 AT5G21326.1 29.927 137 86 4 115 242 95 230 6.18e-12 66.2
Msa0343060 AT3G04810.2 27.684 177 115 5 115 282 86 258 6.72e-12 66.2
Msa0343060 AT3G04810.1 27.684 177 115 5 115 282 86 258 6.72e-12 66.2
Msa0343060 AT3G04810.3 27.684 177 115 5 115 282 86 258 6.72e-12 66.2
Msa0343060 AT1G54510.4 28.249 177 114 5 115 282 86 258 7.13e-12 66.2
Msa0343060 AT1G54510.2 28.249 177 114 5 115 282 86 258 7.13e-12 66.2
Msa0343060 AT1G54510.1 28.249 177 114 5 115 282 86 258 7.13e-12 66.2
Msa0343060 AT1G54510.3 28.249 177 114 5 115 282 86 258 7.13e-12 66.2
Msa0343060 AT1G51660.1 27.976 168 102 4 131 282 170 334 1.81e-11 64.3
Msa0343060 AT4G24100.2 29.240 171 100 7 126 279 125 291 2.13e-11 64.7
Msa0343060 AT4G24100.3 29.240 171 100 7 126 279 141 307 2.31e-11 64.7
Msa0343060 AT4G24100.1 29.240 171 100 7 126 279 125 291 2.49e-11 64.7
Msa0343060 AT4G24100.4 29.240 171 100 7 126 279 141 307 2.65e-11 64.7
Msa0343060 AT3G53930.2 25.967 181 121 5 115 284 101 279 5.56e-11 63.5
Msa0343060 AT3G53930.1 25.967 181 121 5 115 284 101 279 5.61e-11 63.5
Msa0343060 AT5G67480.1 43.548 62 34 1 20 80 271 332 7.54e-11 62.8
Msa0343060 AT5G67480.3 43.548 62 34 1 20 80 271 332 7.54e-11 62.8
Msa0343060 AT5G67480.2 43.548 62 34 1 20 80 282 343 8.00e-11 62.8

Find 66 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTGCAAAATTCGAGTAAA+TGG 0.220351 3_1:-1082307 Msa0343060:CDS
TTCCGAGTCTTTGCAATTCC+TGG 0.259668 3_1:+1082237 None:intergenic
CAAGTACTTGTTTCTCGTTT+TGG 0.270220 3_1:+1078632 None:intergenic
ATGAATCGCCAACGGATATA+TGG 0.301726 3_1:-1074869 Msa0343060:CDS
ATATGAGTTGTGAAGATTGC+AGG 0.345027 3_1:+1078660 None:intergenic
ACCATATCTGTTTGCAATGC+TGG 0.348875 3_1:+1082278 None:intergenic
CCTTCTCGTAATAATTCATC+TGG 0.379686 3_1:+1074735 None:intergenic
TTCTTCATTTGAGAACAGTT+TGG 0.389365 3_1:+1082349 None:intergenic
GCTATTGTGGAAATGGTTAC+TGG 0.394847 3_1:-1074834 Msa0343060:CDS
GCCAGCATTGCAAACAGATA+TGG 0.397264 3_1:-1082279 Msa0343060:CDS
TAACTGAGTCTTTAGGTGTT+TGG 0.399600 3_1:+1078710 None:intergenic
TTAAGGATCCTTTGAGAAGA+TGG 0.405417 3_1:-1074686 Msa0343060:CDS
ACACTATCATTCACCGCTTC+TGG 0.411589 3_1:+1074894 None:intergenic
TGATGTTGACGATTCGAATT+GGG 0.421148 3_1:-1074782 Msa0343060:CDS
TCTTGAAAAGTGTTTCGTTA+AGG 0.422240 3_1:-1074703 Msa0343060:CDS
AGTGCAAAATTCGAGTAAAT+GGG 0.423884 3_1:-1082306 Msa0343060:CDS
TTGATGTTGACGATTCGAAT+TGG 0.426586 3_1:-1074783 Msa0343060:CDS
TGGTTGCGCTATTGTGGAAA+TGG 0.430722 3_1:-1074841 Msa0343060:CDS
TTCTCGAATACGAGAATGTT+GGG 0.438025 3_1:+1075014 None:intergenic
GCTTCTGGTGACATAATTAC+CGG 0.459669 3_1:+1074909 None:intergenic
TTGACGATTCGAATTGGGGT+TGG 0.467699 3_1:-1074777 Msa0343060:CDS
TAACATTACTTGTGCGGCGG+CGG 0.470452 3_1:+1082386 None:intergenic
TGAATCGCCAACGGATATAT+GGG 0.479167 3_1:-1074868 Msa0343060:CDS
CCAACGGATATATGGGCTCT+TGG 0.492558 3_1:-1074861 Msa0343060:CDS
AACATTCTCGTATTCGAGAA+TGG 0.492631 3_1:-1075011 Msa0343060:CDS
GGCTCTTGGTTGCGCTATTG+TGG 0.495111 3_1:-1074847 Msa0343060:CDS
TATACGAGGTCGGTTGTTGA+AGG 0.500415 3_1:-1075090 Msa0343060:CDS
TTATACTAACCGCTCACTCC+AGG 0.503615 3_1:-1082255 Msa0343060:CDS
CTCCAGGAATTGCAAAGACT+CGG 0.514621 3_1:-1082239 Msa0343060:CDS
CAGATGAATTATTACGAGAA+GGG 0.520167 3_1:-1074734 Msa0343060:CDS
GAACGACAGTGGTGAGCTCT+CGG 0.525648 3_1:-1075130 Msa0343060:CDS
CCAGATGAATTATTACGAGA+AGG 0.525954 3_1:-1074735 Msa0343060:CDS
TAGGTGTTTGGCTAAATAGA+CGG 0.540269 3_1:+1078722 None:intergenic
ATTCTCGAATACGAGAATGT+TGG 0.543098 3_1:+1075013 None:intergenic
GGTAATTATGTCACCAGAAG+CGG 0.557800 3_1:-1074907 Msa0343060:CDS
GAACAGTTTGGATGAGAGCA+TGG 0.558811 3_1:+1082361 None:intergenic
GTGAAGATTGCAGGATTCGA+CGG 0.560807 3_1:+1078669 None:intergenic
GGAATGGTAACTGAGTCTTT+AGG 0.562888 3_1:+1078703 None:intergenic
GATTCGACGGCGGTGAGAGA+CGG 0.567936 3_1:+1078682 None:intergenic
GGTGAAAAGTGGCGATCAAG+AGG 0.575193 3_1:-1074936 Msa0343060:CDS
GTTGTAACAGAGTTAAGTTG+AGG 0.584853 3_1:-1074609 None:intergenic
CCAAGAGCCCATATATCCGT+TGG 0.589794 3_1:+1074861 None:intergenic
GGGTTGAACAAGGTGAAAAG+TGG 0.592877 3_1:-1074947 Msa0343060:CDS
TCAGTCTTGCGAAAGAGACA+AGG 0.595495 3_1:-1074968 Msa0343060:CDS
GTGCAAAATTCGAGTAAATG+GGG 0.600317 3_1:-1082305 Msa0343060:CDS
GATGTTGACGATTCGAATTG+GGG 0.607028 3_1:-1074781 Msa0343060:CDS
GTGGCGATCAAGAGGAACTC+CGG 0.608502 3_1:-1074928 Msa0343060:CDS
TCTATCGTCCATCTTCTCAA+AGG 0.609523 3_1:+1074678 None:intergenic
CAGTCTTGCGAAAGAGACAA+GGG 0.612424 3_1:-1074967 Msa0343060:CDS
ATGGCTTAACATTACTTGTG+CGG 0.616612 3_1:+1082380 None:intergenic
ACTGTCGTTCTCGAGTTGAT+CGG 0.619509 3_1:+1075143 None:intergenic
TTTGCAATTCCTGGAGTGAG+CGG 0.621851 3_1:+1082246 None:intergenic
GCTTAACATTACTTGTGCGG+CGG 0.623577 3_1:+1082383 None:intergenic
ACCTCGTATAACGACTAATG+AGG 0.627651 3_1:+1075103 None:intergenic
AGAATCCGCATGGAATGTGT+CGG 0.631308 3_1:-1074811 Msa0343060:CDS
GACGGCGGTGAGAGACGGAA+TGG 0.632883 3_1:+1078687 None:intergenic
TGGTTACTGGAGAATCCGCA+TGG 0.636768 3_1:-1074821 Msa0343060:CDS
CATTAGTCGTTATACGAGGT+CGG 0.643466 3_1:-1075100 Msa0343060:CDS
TGCAAAATTCGAGTAAATGG+GGG 0.648901 3_1:-1082304 Msa0343060:CDS
GATCAACTCGAGAACGACAG+TGG 0.656688 3_1:-1075141 Msa0343060:CDS
AAAGAGACAAGGGTTGAACA+AGG 0.656891 3_1:-1074957 Msa0343060:CDS
TAGTGTGTATGAATCGCCAA+CGG 0.701609 3_1:-1074877 Msa0343060:CDS
ACCTCATTAGTCGTTATACG+AGG 0.719200 3_1:-1075104 Msa0343060:CDS
AAGATTGCAGGATTCGACGG+CGG 0.733343 3_1:+1078672 None:intergenic
CATATCCGACACATTCCATG+CGG 0.747815 3_1:+1074806 None:intergenic
ACTGTAATACATCTGCAGCG+TGG 0.761250 3_1:+1082205 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTACTTATTAAAAAAAA+AGG - chr3_1:1076021-1076040 Msa0343060:intron 10.0%
!! TATTATTATATAAAGACAAT+TGG - chr3_1:1076484-1076503 Msa0343060:intron 10.0%
!! ATCTAACATTTATATTTATA+TGG + chr3_1:1076512-1076531 None:intergenic 10.0%
!!! ATATCATTGTTTTTTTTTAA+GGG - chr3_1:1077645-1077664 Msa0343060:intron 10.0%
!!! TAGTGTTTTATTATTATTAT+TGG + chr3_1:1077911-1077930 None:intergenic 10.0%
!!! TATAAGAAAATTTTGTTTAA+GGG + chr3_1:1079095-1079114 None:intergenic 10.0%
!!! ATATAAGAAAATTTTGTTTA+AGG + chr3_1:1079096-1079115 None:intergenic 10.0%
!!! AATAAAATAGAGTATTTTTT+TGG + chr3_1:1079635-1079654 None:intergenic 10.0%
!!! ATCATTAAATTTTTTTTTGA+AGG + chr3_1:1080132-1080151 None:intergenic 10.0%
!!! AATTTTAATTAAAGTAATGA+TGG + chr3_1:1080170-1080189 None:intergenic 10.0%
!! TTACTTTAATTAAAATTTGT+AGG - chr3_1:1080173-1080192 Msa0343060:intron 10.0%
!!! TTTTAAGAGAATGAATAATA+AGG + chr3_1:1075419-1075438 None:intergenic 15.0%
!! AAAATTTGATCATAAAGAAA+TGG + chr3_1:1075810-1075829 None:intergenic 15.0%
!!! TATTTTAAAAATATTCACTG+AGG + chr3_1:1076538-1076557 None:intergenic 15.0%
!! TACAGTTAAATTAAATTATC+TGG + chr3_1:1076687-1076706 None:intergenic 15.0%
!! CACAAAAAAAAAAAATAGAT+TGG - chr3_1:1077349-1077368 Msa0343060:intron 15.0%
!! ATTTCAGTTATTCAAATATA+TGG - chr3_1:1077416-1077435 Msa0343060:intron 15.0%
!! TATTTATTTGGTTAATTAAG+TGG + chr3_1:1077523-1077542 None:intergenic 15.0%
!! TTAATTAACCAAATAAATAG+TGG - chr3_1:1077524-1077543 Msa0343060:intron 15.0%
!!! CATATCATTGTTTTTTTTTA+AGG - chr3_1:1077644-1077663 Msa0343060:intron 15.0%
!!! AAACAATCATACATTATTTT+TGG + chr3_1:1078032-1078051 None:intergenic 15.0%
!! GAAATATTTGAAGATAATAT+AGG + chr3_1:1078151-1078170 None:intergenic 15.0%
!! TATTTGAATTTACTATTTGA+GGG + chr3_1:1078781-1078800 None:intergenic 15.0%
!! ATATTTGAATTTACTATTTG+AGG + chr3_1:1078782-1078801 None:intergenic 15.0%
!! AAAGGATAAATGAAAAAAAA+TGG + chr3_1:1078853-1078872 None:intergenic 15.0%
!!! TATTTTGTTACACTTTTTAA+AGG + chr3_1:1078871-1078890 None:intergenic 15.0%
!!! GGAATATTTACTATTTTAAT+GGG + chr3_1:1078998-1079017 None:intergenic 15.0%
!!! TGGAATATTTACTATTTTAA+TGG + chr3_1:1078999-1079018 None:intergenic 15.0%
!!! TTGTGCTATTAAAAAAAATA+AGG - chr3_1:1079119-1079138 Msa0343060:intron 15.0%
!!! TTTATAACATTTCATTCTTT+TGG + chr3_1:1079801-1079820 None:intergenic 15.0%
!! TACATGAAAAATAAGAATAA+TGG - chr3_1:1079978-1079997 Msa0343060:intron 15.0%
!!! TAAGTGATACAAATATTTTT+TGG + chr3_1:1080209-1080228 None:intergenic 15.0%
!! AAAAATATTTGTATCACTTA+AGG - chr3_1:1080209-1080228 Msa0343060:intron 15.0%
!! AAAATATTTGTATCACTTAA+GGG - chr3_1:1080210-1080229 Msa0343060:intron 15.0%
!!! ATTGATGAAATTTTGAAAAA+TGG + chr3_1:1080408-1080427 None:intergenic 15.0%
!!! GTTTCTTTATTTTTTCTTTT+CGG + chr3_1:1080842-1080861 None:intergenic 15.0%
!! AAATATTATAATACTCTTCT+CGG + chr3_1:1081845-1081864 None:intergenic 15.0%
!! ATCAAATTTATATACACAAG+AGG + chr3_1:1075381-1075400 None:intergenic 20.0%
!! TGTTGTGAATATATATTCAA+TGG - chr3_1:1075459-1075478 Msa0343060:intron 20.0%
!! TTTAAGAAACTTGAAATTAG+AGG - chr3_1:1075522-1075541 Msa0343060:intron 20.0%
!! ACATCAATTTAAATGTTTGA+TGG - chr3_1:1075639-1075658 Msa0343060:intron 20.0%
!!! TACAATGTTTTTTTTAGCTT+TGG + chr3_1:1075858-1075877 None:intergenic 20.0%
!!! TCCTGATTAATACTTTTTAA+CGG + chr3_1:1075996-1076015 None:intergenic 20.0%
!!! CAAACTAGATTGTTTATTTT+GGG + chr3_1:1076421-1076440 None:intergenic 20.0%
!!! TCAAACTAGATTGTTTATTT+TGG + chr3_1:1076422-1076441 None:intergenic 20.0%
!! TTTGAATCAATTTGCAATTT+GGG + chr3_1:1076929-1076948 None:intergenic 20.0%
!!! TTTTGAATCAATTTGCAATT+TGG + chr3_1:1076930-1076949 None:intergenic 20.0%
!!! TCATCTAATTGTGTTAATTT+TGG + chr3_1:1076948-1076967 None:intergenic 20.0%
!!! TTTTTTGTGAGTATTAGTTT+TGG + chr3_1:1077338-1077357 None:intergenic 20.0%
!! AACATAACAACAAGAATATT+TGG + chr3_1:1077793-1077812 None:intergenic 20.0%
!!! ATTTCTTTTATAAACAAGAG+AGG - chr3_1:1078166-1078185 Msa0343060:intron 20.0%
!!! TTATCTAGGTTTTTTTTTGT+AGG + chr3_1:1078236-1078255 None:intergenic 20.0%
!!! TTTCCTTTTTCGATTTTTTT+TGG - chr3_1:1078730-1078749 Msa0343060:intron 20.0%
!! AAAAAGAAACAGTTATAGTA+AGG - chr3_1:1079843-1079862 Msa0343060:intron 20.0%
!! AATTCAGAACAAAAATTTGT+GGG + chr3_1:1080619-1080638 None:intergenic 20.0%
!! TGAATATCAAAATTATGAAC+TGG - chr3_1:1080638-1080657 Msa0343060:intron 20.0%
!!! TTTTTCACTTTTCATACTTT+GGG + chr3_1:1080750-1080769 None:intergenic 20.0%
!! AAATAACCATTAGATTATGA+AGG - chr3_1:1080790-1080809 Msa0343060:intron 20.0%
!! AATAACCATTAGATTATGAA+GGG - chr3_1:1080791-1080810 Msa0343060:intron 20.0%
!! TAAAGAAACTGAAAAATGAA+AGG - chr3_1:1080853-1080872 Msa0343060:intron 20.0%
!!! AAAGTCTTTGTTTTATTCTT+TGG + chr3_1:1080914-1080933 None:intergenic 20.0%
!! TTAGTTAATAATTGAAAACC+TGG + chr3_1:1081367-1081386 None:intergenic 20.0%
!! AATTATTAACTAAAGCGAAA+GGG - chr3_1:1081374-1081393 Msa0343060:intron 20.0%
!! TTTCATTCATTCAAAAGATA+TGG + chr3_1:1081509-1081528 None:intergenic 20.0%
!!! ATCTTTTGAATGAATGAAAA+CGG - chr3_1:1081510-1081529 Msa0343060:intron 20.0%
!! CAGAAAAACTATGTTATATT+AGG + chr3_1:1081700-1081719 None:intergenic 20.0%
!!! GTATTTTTTTGATCAAGAAA+AGG + chr3_1:1081779-1081798 None:intergenic 20.0%
!! TCAAGTATATTCACAAAAAA+GGG - chr3_1:1081973-1081992 Msa0343060:intron 20.0%
!!! AATAATTCATCTGGAATTTT+TGG + chr3_1:1082297-1082316 None:intergenic 20.0%
! AATAGAATATCGAAATCTCT+AGG + chr3_1:1074874-1074893 None:intergenic 25.0%
! ATATAGTCACAAAGATTCAT+TGG + chr3_1:1075105-1075124 None:intergenic 25.0%
! ATATAGTCACAAAGATTCAT+TGG + chr3_1:1075105-1075124 None:intergenic 25.0%
! TGTTGTGAATGTATATTCAA+TGG - chr3_1:1075558-1075577 Msa0343060:intron 25.0%
! ATTATGTCAAAAACACAAAG+AGG - chr3_1:1075679-1075698 Msa0343060:intron 25.0%
! AAGAATAACAAGAATCTCTT+TGG + chr3_1:1075767-1075786 None:intergenic 25.0%
!!! CCTGATTAATACTTTTTAAC+GGG + chr3_1:1075995-1076014 None:intergenic 25.0%
! GATTTAATATCGAATATTGC+TGG - chr3_1:1076077-1076096 Msa0343060:intron 25.0%
! ACACTGTGTAAAAATCTTAT+CGG + chr3_1:1076134-1076153 None:intergenic 25.0%
!! AGCATTTTTCTTGACATTTT+GGG + chr3_1:1076733-1076752 None:intergenic 25.0%
! TTGAATCAATTTGCAATTTG+GGG + chr3_1:1076928-1076947 None:intergenic 25.0%
! TTCTAATATATCACAAATCG+TGG + chr3_1:1077142-1077161 None:intergenic 25.0%
! ACGATTTGTGATATATTAGA+AGG - chr3_1:1077141-1077160 Msa0343060:intron 25.0%
! CGATTTGTGATATATTAGAA+GGG - chr3_1:1077142-1077161 Msa0343060:intron 25.0%
!!! TTCAGAATCGATTTTCAATT+TGG - chr3_1:1077173-1077192 Msa0343060:intron 25.0%
!!! TCAGAATCGATTTTCAATTT+GGG - chr3_1:1077174-1077193 Msa0343060:intron 25.0%
!! TTTTGCAGAGTAATACAAAT+GGG + chr3_1:1077397-1077416 None:intergenic 25.0%
!! ATTTTGCAGAGTAATACAAA+TGG + chr3_1:1077398-1077417 None:intergenic 25.0%
!! ATTTTCCAGAATAGTACAAA+AGG - chr3_1:1077599-1077618 Msa0343060:intron 25.0%
!! TTTTCCAGAATAGTACAAAA+GGG - chr3_1:1077600-1077619 Msa0343060:intron 25.0%
! TATCATTGTTGATACTTGTA+TGG - chr3_1:1077674-1077693 Msa0343060:intron 25.0%
! CTATCATAGAAAAAGAAGTT+GGG + chr3_1:1077761-1077780 None:intergenic 25.0%
!!! ACAAGAATATTTGGTGTATT+GGG + chr3_1:1077784-1077803 None:intergenic 25.0%
!!! AACAAGAATATTTGGTGTAT+TGG + chr3_1:1077785-1077804 None:intergenic 25.0%
!! ATTAGTGAAACATGCTTTTA+AGG + chr3_1:1077885-1077904 None:intergenic 25.0%
!! AAAAAAATTTGTTCCACAAG+AGG - chr3_1:1078116-1078135 Msa0343060:intron 25.0%
! AAACAAGTACTTGATCATTT+AGG - chr3_1:1078416-1078435 Msa0343060:intron 25.0%
! CATCCAAAAAAAATCGAAAA+AGG + chr3_1:1078736-1078755 None:intergenic 25.0%
!!! CTTTTTCGATTTTTTTTGGA+TGG - chr3_1:1078734-1078753 Msa0343060:intron 25.0%
!! AAATAAAAGCGTAACAAACA+TGG - chr3_1:1078804-1078823 Msa0343060:intron 25.0%
! AGTAAATATTCCACTACAAT+AGG - chr3_1:1079006-1079025 Msa0343060:intron 25.0%
! TAATATTGTTCCTATTGTAG+TGG + chr3_1:1079019-1079038 None:intergenic 25.0%
!! TATGAAGATGATAGAGATTT+TGG - chr3_1:1079041-1079060 Msa0343060:intron 25.0%
!! ATGAAGATGATAGAGATTTT+GGG - chr3_1:1079042-1079061 Msa0343060:intron 25.0%
! CAATAAAATTAGCGAAAAGA+CGG - chr3_1:1079301-1079320 Msa0343060:intron 25.0%
! ATGCAAGTAATATTAAGTAG+AGG + chr3_1:1079350-1079369 None:intergenic 25.0%
! AAAAATTACTCAAACCCATT+TGG - chr3_1:1079450-1079469 Msa0343060:intron 25.0%
! TAAGTGTGAAATGATCAAAA+TGG - chr3_1:1079671-1079690 Msa0343060:intron 25.0%
! TAAAACCTTACAAAAGTTGT+AGG - chr3_1:1079714-1079733 Msa0343060:intron 25.0%
! TCAAAACTTATGTATGTAGT+TGG - chr3_1:1080003-1080022 Msa0343060:intron 25.0%
!!! ACTCAAGTGTCTATTTTAAA+AGG + chr3_1:1080281-1080300 None:intergenic 25.0%
!!! TTTTGAAAAATGGCTATAGT+GGG + chr3_1:1080398-1080417 None:intergenic 25.0%
!!! ATTTTGAAAAATGGCTATAG+TGG + chr3_1:1080399-1080418 None:intergenic 25.0%
!! GATAAAATAGACTTTTTGTG+TGG + chr3_1:1080574-1080593 None:intergenic 25.0%
! GGTCAAATCAAATTACAAAA+GGG + chr3_1:1080596-1080615 None:intergenic 25.0%
! ATTCAGAACAAAAATTTGTG+GGG + chr3_1:1080618-1080637 None:intergenic 25.0%
! CAATTCAGAACAAAAATTTG+TGG + chr3_1:1080620-1080639 None:intergenic 25.0%
! ATCAAAATTATGAACTGGAA+AGG - chr3_1:1080643-1080662 Msa0343060:intron 25.0%
!!! GTTTTTCACTTTTCATACTT+TGG + chr3_1:1080751-1080770 None:intergenic 25.0%
! TGAAAAGTGAAAAACAATCA+TGG - chr3_1:1080756-1080775 Msa0343060:intron 25.0%
! TATTTCCCTTCATAATCTAA+TGG + chr3_1:1080799-1080818 None:intergenic 25.0%
! TTATGAAGGGAAATAATTTC+TGG - chr3_1:1080804-1080823 Msa0343060:intron 25.0%
! AAAACTCATTGATAGATTGT+TGG + chr3_1:1081122-1081141 None:intergenic 25.0%
!! AGTTTTCCTATTCACAATTT+TGG - chr3_1:1081136-1081155 Msa0343060:intron 25.0%
!!! TGGCTTTGAAAATTATTTTG+TGG - chr3_1:1081156-1081175 Msa0343060:intron 25.0%
!!! GGCTTTGAAAATTATTTTGT+GGG - chr3_1:1081157-1081176 Msa0343060:intron 25.0%
!!! GCTTTGAAAATTATTTTGTG+GGG - chr3_1:1081158-1081177 Msa0343060:intron 25.0%
! CAATTATTAACTAAAGCGAA+AGG - chr3_1:1081373-1081392 Msa0343060:intron 25.0%
! ATTATTAACTAAAGCGAAAG+GGG - chr3_1:1081375-1081394 Msa0343060:intron 25.0%
! AATTTCAACTCATTGATCTA+GGG - chr3_1:1081536-1081555 Msa0343060:intron 25.0%
!! TTTTTCTGACATTGAAAGAT+CGG - chr3_1:1081712-1081731 Msa0343060:intron 25.0%
!!! ATTTTTCTAGAATATGTCAG+TGG - chr3_1:1081861-1081880 Msa0343060:intron 25.0%
! CTCAAGTATATTCACAAAAA+AGG - chr3_1:1081972-1081991 Msa0343060:intron 25.0%
!! AACTGAAACATTTTCAACAT+CGG + chr3_1:1082412-1082431 None:intergenic 25.0%
TTCTTCATTTGAGAACAGTT+TGG + chr3_1:1074692-1074711 None:intergenic 30.0%
AAGTGCAAAATTCGAGTAAA+TGG - chr3_1:1074731-1074750 Msa0343060:CDS 30.0%
AGTGCAAAATTCGAGTAAAT+GGG - chr3_1:1074732-1074751 Msa0343060:CDS 30.0%
!!! CACAACAGTCTTTTTTTTTG+TGG - chr3_1:1074943-1074962 Msa0343060:CDS 30.0%
! TTGCCAAATTCTATTAGCTT+TGG - chr3_1:1075147-1075166 Msa0343060:CDS 30.0%
! TTGCCAAATTCTATTAGCTT+TGG - chr3_1:1075147-1075166 Msa0343060:CDS 30.0%
TGAGACTTGAATTGAATAGT+TGG + chr3_1:1075500-1075519 None:intergenic 30.0%
GAAAACTTGAATTGAGTAGT+TGG + chr3_1:1075602-1075621 None:intergenic 30.0%
!! CCCGTTAAAAAGTATTAATC+AGG - chr3_1:1075992-1076011 Msa0343060:intron 30.0%
CACTGTGTAAAAATCTTATC+GGG + chr3_1:1076133-1076152 None:intergenic 30.0%
GAAAGAATTTAATTGGGTGA+TGG - chr3_1:1076198-1076217 Msa0343060:intron 30.0%
!!! TCAAATCGGGATGATTTTTT+CGG - chr3_1:1076231-1076250 Msa0343060:intron 30.0%
!!! CTAGATTGTTTATTTTGGGA+TGG + chr3_1:1076417-1076436 None:intergenic 30.0%
! GCATTTTTCTTGACATTTTG+GGG + chr3_1:1076732-1076751 None:intergenic 30.0%
! GAGCATTTTTCTTGACATTT+TGG + chr3_1:1076734-1076753 None:intergenic 30.0%
! GCATTTTCGAAAGTTTAGTT+GGG + chr3_1:1076781-1076800 None:intergenic 30.0%
!!! TATTTTGACAAAACATACCC+AGG - chr3_1:1076888-1076907 Msa0343060:intron 30.0%
TGAATCAATTTGCAATTTGG+GGG + chr3_1:1076927-1076946 None:intergenic 30.0%
!! ATTGTGTTAATTTTGGTGAG+TGG + chr3_1:1077062-1077081 None:intergenic 30.0%
!! CAGAATCGATTTTCAATTTG+GGG - chr3_1:1077175-1077194 Msa0343060:intron 30.0%
!! AGAATCGATTTTCAATTTGG+GGG - chr3_1:1077176-1077195 Msa0343060:intron 30.0%
!!! GTATTTTGACAAAACATACC+AGG + chr3_1:1076887-1076906 None:intergenic 30.0%
!!! TGTGAGTATTAGTTTTGGAA+CGG + chr3_1:1077333-1077352 None:intergenic 30.0%
TCAAAATGCTGGAAAAATAG+TGG + chr3_1:1077451-1077470 None:intergenic 30.0%
!! ATTTTTCAGCTTCAAAATGC+TGG + chr3_1:1077462-1077481 None:intergenic 30.0%
!!! CATTTTGAAGCTGAAAAATG+TGG - chr3_1:1077463-1077482 Msa0343060:intron 30.0%
AATCCCTTGTTAATCATCTT+GGG - chr3_1:1077728-1077747 Msa0343060:intron 30.0%
GCTATCATAGAAAAAGAAGT+TGG + chr3_1:1077762-1077781 None:intergenic 30.0%
TGTTTGTCATCAATATCTCA+TGG - chr3_1:1078047-1078066 Msa0343060:intron 30.0%
!!! TCTAGGTTTTTTTTTGTAGG+AGG + chr3_1:1078233-1078252 None:intergenic 30.0%
AGCAGTTAAATAGTATGTGA+GGG + chr3_1:1078447-1078466 None:intergenic 30.0%
! TTTGAGTTCATGTATGTTCA+TGG + chr3_1:1078531-1078550 None:intergenic 30.0%
CAAATAGTCAAATCACCTTT+AGG - chr3_1:1078560-1078579 Msa0343060:intron 30.0%
GAATGAATAGTCATACCTAA+AGG + chr3_1:1078578-1078597 None:intergenic 30.0%
!! GTTTTAAGCATGGTTTAAGT+GGG + chr3_1:1078606-1078625 None:intergenic 30.0%
!!! AGTTTTAAGCATGGTTTAAG+TGG + chr3_1:1078607-1078626 None:intergenic 30.0%
CTTAAACCATGCTTAAAACT+AGG - chr3_1:1078607-1078626 Msa0343060:intron 30.0%
TAACGCGTATAAGTTATGAA+CGG + chr3_1:1079278-1079297 None:intergenic 30.0%
TTCATAACTTATACGCGTTA+GGG - chr3_1:1079278-1079297 Msa0343060:intron 30.0%
!! GTGTCTATTTTAAAAGGTTG+AGG + chr3_1:1080275-1080294 None:intergenic 30.0%
GATTGTCATCTTAACTAAGT+TGG + chr3_1:1080496-1080515 None:intergenic 30.0%
!! TAAGATGACAATCACTTTTC+TGG - chr3_1:1080503-1080522 Msa0343060:intron 30.0%
GGGTCAAATCAAATTACAAA+AGG + chr3_1:1080597-1080616 None:intergenic 30.0%
TTCAGAACAAAAATTTGTGG+GGG + chr3_1:1080617-1080636 None:intergenic 30.0%
TGGTTATAATTCAAACTCCA+TGG + chr3_1:1080724-1080743 None:intergenic 30.0%
!! ACTTTTCATACTTTGGGTTA+TGG + chr3_1:1080744-1080763 None:intergenic 30.0%
GAAACTGAAAAATGAAAGGA+AGG - chr3_1:1080857-1080876 Msa0343060:intron 30.0%
CCACACAAAATCATGTATTA+TGG + chr3_1:1081006-1081025 None:intergenic 30.0%
! CCATAATACATGATTTTGTG+TGG - chr3_1:1081003-1081022 Msa0343060:intron 30.0%
! TAATACATGATTTTGTGTGG+AGG - chr3_1:1081006-1081025 Msa0343060:intron 30.0%
TCAAAGCCAAAATTGTGAAT+AGG + chr3_1:1081145-1081164 None:intergenic 30.0%
!! TTGAAAATTATTTTGTGGGG+TGG - chr3_1:1081161-1081180 Msa0343060:intron 30.0%
!!! TGTCATTTTTTGAAGTTCGT+AGG - chr3_1:1081209-1081228 Msa0343060:intron 30.0%
!!! GTCATTTTTTGAAGTTCGTA+GGG - chr3_1:1081210-1081229 Msa0343060:intron 30.0%
!!! TCATTTTTTGAAGTTCGTAG+GGG - chr3_1:1081211-1081230 Msa0343060:intron 30.0%
AGATTAATTGCATGTGTACA+CGG - chr3_1:1081238-1081257 Msa0343060:intron 30.0%
!!! GTTTTGAAACAAAGAAAGTG+AGG + chr3_1:1081272-1081291 None:intergenic 30.0%
! ATTAGATTTTCAGATCAACC+AGG - chr3_1:1081346-1081365 Msa0343060:intron 30.0%
AACAAAAGTAAAAGAAGTCC+CGG + chr3_1:1081412-1081431 None:intergenic 30.0%
!! TCTTTTACTTTTGTTGAACG+TGG - chr3_1:1081417-1081436 Msa0343060:intron 30.0%
!! CTTTTACTTTTGTTGAACGT+GGG - chr3_1:1081418-1081437 Msa0343060:intron 30.0%
!! TTTTACTTTTGTTGAACGTG+GGG - chr3_1:1081419-1081438 Msa0343060:intron 30.0%
GAATTTCAACTCATTGATCT+AGG - chr3_1:1081535-1081554 Msa0343060:intron 30.0%
ATAGGAAATAAACTGTCGAT+AGG - chr3_1:1081559-1081578 Msa0343060:intron 30.0%
AGTGATATATATGTCACACA+TGG + chr3_1:1081618-1081637 None:intergenic 30.0%
! TTTTCTGACATTGAAAGATC+GGG - chr3_1:1081713-1081732 Msa0343060:intron 30.0%
! CCAAAACACTTGATAATATG+TGG + chr3_1:1081801-1081820 None:intergenic 30.0%
! CCACATATTATCAAGTGTTT+TGG - chr3_1:1081798-1081817 Msa0343060:intron 30.0%
CAGATGAATTATTACGAGAA+GGG - chr3_1:1082304-1082323 Msa0343060:CDS 30.0%
!! TCTTGAAAAGTGTTTCGTTA+AGG - chr3_1:1082335-1082354 Msa0343060:CDS 30.0%
! TTTTCAACATCGGAGATAAA+CGG + chr3_1:1082402-1082421 None:intergenic 30.0%
ATGGCTTAACATTACTTGTG+CGG + chr3_1:1074661-1074680 None:intergenic 35.0%
! TACTCGAATTTTGCACTTAC+TGG + chr3_1:1074729-1074748 None:intergenic 35.0%
GTGCAAAATTCGAGTAAATG+GGG - chr3_1:1074733-1074752 Msa0343060:CDS 35.0%
TGCAAAATTCGAGTAAATGG+GGG - chr3_1:1074734-1074753 Msa0343060:CDS 35.0%
! ATCTGAAGAAGCATGTAGAA+CGG - chr3_1:1075014-1075033 Msa0343060:CDS 35.0%
TTTCCAAAACTTCAGCTCTA+CGG + chr3_1:1075063-1075082 None:intergenic 35.0%
CCACCAAAGCTAATAGAATT+TGG + chr3_1:1075153-1075172 None:intergenic 35.0%
!! CCAAATTCTATTAGCTTTGG+TGG - chr3_1:1075150-1075169 Msa0343060:CDS 35.0%
TTTCCAAAACTTCAGCTCTA+CGG + chr3_1:1075063-1075082 None:intergenic 35.0%
CCACCAAAGCTAATAGAATT+TGG + chr3_1:1075153-1075172 None:intergenic 35.0%
!! CCAAATTCTATTAGCTTTGG+TGG - chr3_1:1075150-1075169 Msa0343060:CDS 35.0%
GAATTGAATAGTTGGACCTT+AGG + chr3_1:1075492-1075511 None:intergenic 35.0%
!! CACTTTTTGCAGTGAAACTA+TGG + chr3_1:1075739-1075758 None:intergenic 35.0%
GGCCAGGAAAGAATTTAATT+GGG - chr3_1:1076192-1076211 Msa0343060:intron 35.0%
CACCCAATTAAATTCTTTCC+TGG + chr3_1:1076197-1076216 None:intergenic 35.0%
!! TTAATTGGGTGATGGCTTTT+CGG - chr3_1:1076206-1076225 Msa0343060:intron 35.0%
!!! CAAATCGGGATGATTTTTTC+GGG - chr3_1:1076232-1076251 Msa0343060:intron 35.0%
!!! AAATCGGGATGATTTTTTCG+GGG - chr3_1:1076233-1076252 Msa0343060:intron 35.0%
! GGCATTTTCGAAAGTTTAGT+TGG + chr3_1:1076782-1076801 None:intergenic 35.0%
TCACAAATCGTCAAGAGATA+AGG - chr3_1:1076985-1077004 Msa0343060:intron 35.0%
!! TTAATTTTGGTGAGTGGTGT+TGG + chr3_1:1077056-1077075 None:intergenic 35.0%
! TTTTCAATTTGGGGGAGAAT+TGG - chr3_1:1077184-1077203 Msa0343060:intron 35.0%
!!! TGGGAGGAAACATTTTTTGT+TGG - chr3_1:1077280-1077299 Msa0343060:intron 35.0%
!!! GGGAGGAAACATTTTTTGTT+GGG - chr3_1:1077281-1077300 Msa0343060:intron 35.0%
TTGTGCGTCCACTATTTATT+TGG + chr3_1:1077535-1077554 None:intergenic 35.0%
GGTCACACAGACTATATATT+TGG - chr3_1:1077567-1077586 Msa0343060:intron 35.0%
! TACACCCTTTTGTACTATTC+TGG + chr3_1:1077607-1077626 None:intergenic 35.0%
! ACAAAAGGGTGTACACATTA+AGG - chr3_1:1077614-1077633 Msa0343060:intron 35.0%
! CAAAAGGGTGTACACATTAA+GGG - chr3_1:1077615-1077634 Msa0343060:intron 35.0%
GAATCCCTTGTTAATCATCT+TGG - chr3_1:1077727-1077746 Msa0343060:intron 35.0%
! TAGAAAAAGAAGTTGGGTTG+TGG + chr3_1:1077755-1077774 None:intergenic 35.0%
! CATACCTCCTTTTTCTCATT+AGG - chr3_1:1077819-1077838 Msa0343060:intron 35.0%
TGTCTAGCCTAATGAGAAAA+AGG + chr3_1:1077829-1077848 None:intergenic 35.0%
TTGTCATCAATATCTCATGG+TGG - chr3_1:1078050-1078069 Msa0343060:intron 35.0%
AATTCATGATCGTTACGGTT+TGG + chr3_1:1078263-1078282 None:intergenic 35.0%
AAACCGTAACGATCATGAAT+TGG - chr3_1:1078262-1078281 Msa0343060:intron 35.0%
AACCGTAACGATCATGAATT+GGG - chr3_1:1078263-1078282 Msa0343060:intron 35.0%
AACCCAATTCATGATCGTTA+CGG + chr3_1:1078268-1078287 None:intergenic 35.0%
TAGGTGTTTGGCTAAATAGA+CGG + chr3_1:1078319-1078338 None:intergenic 35.0%
TAACTGAGTCTTTAGGTGTT+TGG + chr3_1:1078331-1078350 None:intergenic 35.0%
ATATGAGTTGTGAAGATTGC+AGG + chr3_1:1078381-1078400 None:intergenic 35.0%
!! CAAGTACTTGTTTCTCGTTT+TGG + chr3_1:1078409-1078428 None:intergenic 35.0%
GAGCAGTTAAATAGTATGTG+AGG + chr3_1:1078448-1078467 None:intergenic 35.0%
!!! GTAATGCCTAGTTTTAAGCA+TGG + chr3_1:1078616-1078635 None:intergenic 35.0%
AATACCCTTCAAATTGGGAT+AGG + chr3_1:1078672-1078691 None:intergenic 35.0%
GTTCATAACTTATACGCGTT+AGG - chr3_1:1079277-1079296 Msa0343060:intron 35.0%
!!! TTTTTGGATTAGTCGATCCA+AGG + chr3_1:1079619-1079638 None:intergenic 35.0%
CTTACAAAAGTTGTAGGAGA+GGG - chr3_1:1079720-1079739 Msa0343060:intron 35.0%
TTACAAAAGTTGTAGGAGAG+GGG - chr3_1:1079721-1079740 Msa0343060:intron 35.0%
! TAGTTGCTTAGTGGTGTTTT+TGG - chr3_1:1080056-1080075 Msa0343060:intron 35.0%
!! CTATAGTGGGTGTAATTGTT+GGG + chr3_1:1080385-1080404 None:intergenic 35.0%
!! ACTTTTTGTGTGGTTTGTAG+GGG + chr3_1:1080564-1080583 None:intergenic 35.0%
!! GACTTTTTGTGTGGTTTGTA+GGG + chr3_1:1080565-1080584 None:intergenic 35.0%
!! AGACTTTTTGTGTGGTTTGT+AGG + chr3_1:1080566-1080585 None:intergenic 35.0%
! ATTGTTTGATTTAGTCACCG+AGG + chr3_1:1080690-1080709 None:intergenic 35.0%
GCATCTCAATCACAAAGTAA+TGG + chr3_1:1080892-1080911 None:intergenic 35.0%
TTCGATCAATACGAACATGA+AGG + chr3_1:1080940-1080959 None:intergenic 35.0%
GGTGGAGTCGAATAAAAAAA+GGG - chr3_1:1081179-1081198 Msa0343060:intron 35.0%
! CAAAAGATATGGTTGCTTTG+AGG + chr3_1:1081498-1081517 None:intergenic 35.0%
! TCTTTTACGACACATGAGAT+TGG - chr3_1:1081744-1081763 Msa0343060:intron 35.0%
! CTTTTACGACACATGAGATT+GGG - chr3_1:1081745-1081764 Msa0343060:intron 35.0%
!! TTTCTAGAATATGTCAGTGG+TGG - chr3_1:1081864-1081883 Msa0343060:intron 35.0%
! TGTTCATTGCGATTTGAAGT+TGG - chr3_1:1081998-1082017 Msa0343060:intron 35.0%
TTCTCGAATACGAGAATGTT+GGG + chr3_1:1082027-1082046 None:intergenic 35.0%
ATTCTCGAATACGAGAATGT+TGG + chr3_1:1082028-1082047 None:intergenic 35.0%
AACATTCTCGTATTCGAGAA+TGG - chr3_1:1082027-1082046 Msa0343060:intron 35.0%
TTGATGTTGACGATTCGAAT+TGG - chr3_1:1082255-1082274 Msa0343060:CDS 35.0%
TGATGTTGACGATTCGAATT+GGG - chr3_1:1082256-1082275 Msa0343060:CDS 35.0%
CCTTCTCGTAATAATTCATC+TGG + chr3_1:1082306-1082325 None:intergenic 35.0%
CCAGATGAATTATTACGAGA+AGG - chr3_1:1082303-1082322 Msa0343060:CDS 35.0%
! TTAAGGATCCTTTGAGAAGA+TGG - chr3_1:1082352-1082371 Msa0343060:CDS 35.0%
ACCATATCTGTTTGCAATGC+TGG + chr3_1:1074763-1074782 None:intergenic 40.0%
! TTTCCGTAGAGCTGAAGTTT+TGG - chr3_1:1075057-1075076 Msa0343060:intron 40.0%
!!! GCTGAAGTTTTGGAAATCGA+TGG - chr3_1:1075067-1075086 Msa0343060:CDS 40.0%
! TTTCCGTAGAGCTGAAGTTT+TGG - chr3_1:1075057-1075076 Msa0343060:intron 40.0%
!!! GCTGAAGTTTTGGAAATCGA+TGG - chr3_1:1075067-1075086 Msa0343060:CDS 40.0%
ATTCAATGGTTGAGAGCCTA+AGG - chr3_1:1075473-1075492 Msa0343060:intron 40.0%
CTTTCGTGGAATAGTTGTTC+GGG + chr3_1:1076107-1076126 None:intergenic 40.0%
GCTTTCGTGGAATAGTTGTT+CGG + chr3_1:1076108-1076127 None:intergenic 40.0%
GGGCCAGGAAAGAATTTAAT+TGG - chr3_1:1076191-1076210 Msa0343060:intron 40.0%
!! TAATTGGGTGATGGCTTTTC+GGG - chr3_1:1076207-1076226 Msa0343060:intron 40.0%
!! ATGGCTTTTCGGGATCAAAT+CGG - chr3_1:1076217-1076236 Msa0343060:intron 40.0%
! GGGAGTGAACAAAACTTGTT+GGG + chr3_1:1076761-1076780 None:intergenic 40.0%
TGGGAGTGAACAAAACTTGT+TGG + chr3_1:1076762-1076781 None:intergenic 40.0%
AGTGTAACTTAACTCACGCA+GGG - chr3_1:1076836-1076855 Msa0343060:intron 40.0%
! TAACTCACACGGGGATATTT+TGG - chr3_1:1077247-1077266 Msa0343060:intron 40.0%
! AACTCACACGGGGATATTTT+GGG - chr3_1:1077248-1077267 Msa0343060:intron 40.0%
!! ATATTTTGGGCAGTTCGGTT+GGG - chr3_1:1077261-1077280 Msa0343060:intron 40.0%
GTGGACGCACAACTAAAAAA+AGG - chr3_1:1077543-1077562 Msa0343060:intron 40.0%
GACGCACAACTAAAAAAAGG+TGG - chr3_1:1077546-1077565 Msa0343060:intron 40.0%
TTGATACTTGTATGGCTTCC+TGG - chr3_1:1077682-1077701 Msa0343060:intron 40.0%
AACAAGGGATTCATATGCGA+AGG + chr3_1:1077719-1077738 None:intergenic 40.0%
GGACCCAAGATGATTAACAA+GGG + chr3_1:1077734-1077753 None:intergenic 40.0%
TGGACCCAAGATGATTAACA+AGG + chr3_1:1077735-1077754 None:intergenic 40.0%
CTAGCCTAATGAGAAAAAGG+AGG + chr3_1:1077826-1077845 None:intergenic 40.0%
TTCTCATTAGGCTAGACAAG+TGG - chr3_1:1077831-1077850 Msa0343060:intron 40.0%
!! TACGGTTTGGTGTGTTATCT+AGG + chr3_1:1078250-1078269 None:intergenic 40.0%
GGAATGGTAACTGAGTCTTT+AGG + chr3_1:1078338-1078357 None:intergenic 40.0%
!!! ACTTGTTTCTCGTTTTGGAG+AGG + chr3_1:1078404-1078423 None:intergenic 40.0%
AGCATGGTTTAAGTGGGATA+TGG + chr3_1:1078600-1078619 None:intergenic 40.0%
CTTCAAATTGGGATAGGTGT+GGG + chr3_1:1078666-1078685 None:intergenic 40.0%
CACACCTATCCCAATTTGAA+GGG - chr3_1:1078665-1078684 Msa0343060:CDS 40.0%
CGGAGAATACCCTTCAAATT+GGG + chr3_1:1078677-1078696 None:intergenic 40.0%
ACGGAGAATACCCTTCAAAT+TGG + chr3_1:1078678-1078697 None:intergenic 40.0%
GGTCATGTGAGTGCAAAATA+TGG - chr3_1:1079322-1079341 Msa0343060:intron 40.0%
! CCTCTCCTACAACTTTTGTA+AGG + chr3_1:1079722-1079741 None:intergenic 40.0%
CCTTACAAAAGTTGTAGGAG+AGG - chr3_1:1079719-1079738 Msa0343060:intron 40.0%
GTAGTTGGTTGTGAAGTTCT+TGG - chr3_1:1080018-1080037 Msa0343060:intron 40.0%
ATGTGTGTGTAGTTGCTTAG+TGG - chr3_1:1080047-1080066 Msa0343060:intron 40.0%
GTATCACTTAAGGGTCTGTT+TGG - chr3_1:1080219-1080238 Msa0343060:intron 40.0%
! CGAAAGTAGTATCGAGACAA+TGG - chr3_1:1080333-1080352 Msa0343060:intron 40.0%
GTGTAATTGTTGGGATTGTG+AGG + chr3_1:1080376-1080395 None:intergenic 40.0%
!! GCTATAGTGGGTGTAATTGT+TGG + chr3_1:1080386-1080405 None:intergenic 40.0%
GGGTAAATGGCTAATTGTAG+GGG + chr3_1:1080544-1080563 None:intergenic 40.0%
GGGGTAAATGGCTAATTGTA+GGG + chr3_1:1080545-1080564 None:intergenic 40.0%
AGGGGTAAATGGCTAATTGT+AGG + chr3_1:1080546-1080565 None:intergenic 40.0%
AACAATCTCTCTCAAAGCCA+TGG - chr3_1:1080704-1080723 Msa0343060:intron 40.0%
ACCAATCCTCAATGTCATTC+GGG + chr3_1:1081057-1081076 None:intergenic 40.0%
CACCAATCCTCAATGTCATT+CGG + chr3_1:1081058-1081077 None:intergenic 40.0%
! AATGACATTGAGGATTGGTG+AGG - chr3_1:1081058-1081077 Msa0343060:intron 40.0%
GGGTGGAGTCGAATAAAAAA+AGG - chr3_1:1081178-1081197 Msa0343060:intron 40.0%
CTAAAGCGAAAGGGGAAATA+TGG - chr3_1:1081383-1081402 Msa0343060:intron 40.0%
GAAAGGGGAAATATGGTTTC+CGG - chr3_1:1081390-1081409 Msa0343060:intron 40.0%
AAAGGGGAAATATGGTTTCC+GGG - chr3_1:1081391-1081410 Msa0343060:intron 40.0%
GAGGTCAAGGCAATATCATA+TGG + chr3_1:1081479-1081498 None:intergenic 40.0%
!! ATATGGTTGCTTTGAGGTCA+AGG + chr3_1:1081492-1081511 None:intergenic 40.0%
CAACTCATTGATCTAGGGAT+AGG - chr3_1:1081541-1081560 Msa0343060:intron 40.0%
GAAATAAACTGTCGATAGGC+TGG - chr3_1:1081563-1081582 Msa0343060:intron 40.0%
ACCTCATTAGTCGTTATACG+AGG - chr3_1:1081934-1081953 Msa0343060:intron 40.0%
ACCTCGTATAACGACTAATG+AGG + chr3_1:1081938-1081957 None:intergenic 40.0%
CATTAGTCGTTATACGAGGT+CGG - chr3_1:1081938-1081957 Msa0343060:intron 40.0%
AAAGAGACAAGGGTTGAACA+AGG - chr3_1:1082081-1082100 Msa0343060:intron 40.0%
GCTTCTGGTGACATAATTAC+CGG + chr3_1:1082132-1082151 None:intergenic 40.0%
GGTAATTATGTCACCAGAAG+CGG - chr3_1:1082131-1082150 Msa0343060:intron 40.0%
TAGTGTGTATGAATCGCCAA+CGG - chr3_1:1082161-1082180 Msa0343060:intron 40.0%
ATGAATCGCCAACGGATATA+TGG - chr3_1:1082169-1082188 Msa0343060:intron 40.0%
TGAATCGCCAACGGATATAT+GGG - chr3_1:1082170-1082189 Msa0343060:intron 40.0%
GCTATTGTGGAAATGGTTAC+TGG - chr3_1:1082204-1082223 Msa0343060:intron 40.0%
GATGTTGACGATTCGAATTG+GGG - chr3_1:1082257-1082276 Msa0343060:CDS 40.0%
TCTATCGTCCATCTTCTCAA+AGG + chr3_1:1082363-1082382 None:intergenic 40.0%
GCTTAACATTACTTGTGCGG+CGG + chr3_1:1074658-1074677 None:intergenic 45.0%
GAACAGTTTGGATGAGAGCA+TGG + chr3_1:1074680-1074699 None:intergenic 45.0%
GCCAGCATTGCAAACAGATA+TGG - chr3_1:1074759-1074778 Msa0343060:CDS 45.0%
TTATACTAACCGCTCACTCC+AGG - chr3_1:1074783-1074802 Msa0343060:CDS 45.0%
TTTGCAATTCCTGGAGTGAG+CGG + chr3_1:1074795-1074814 None:intergenic 45.0%
CTCCAGGAATTGCAAAGACT+CGG - chr3_1:1074799-1074818 Msa0343060:CDS 45.0%
TTCCGAGTCTTTGCAATTCC+TGG + chr3_1:1074804-1074823 None:intergenic 45.0%
ACTGTAATACATCTGCAGCG+TGG + chr3_1:1074836-1074855 None:intergenic 45.0%
ATCTTATCGGGATGCTTTCG+TGG + chr3_1:1076121-1076140 None:intergenic 45.0%
TTTCCTGGCCCACAATACAA+GGG + chr3_1:1076182-1076201 None:intergenic 45.0%
!! TGGCTTTTCGGGATCAAATC+GGG - chr3_1:1076218-1076237 Msa0343060:intron 45.0%
! TTTGGGATGGAGCTACACAA+AGG + chr3_1:1076404-1076423 None:intergenic 45.0%
TGTATGTGATATCAGCCTCC+TGG - chr3_1:1076703-1076722 Msa0343060:intron 45.0%
!! CTTGACATTTTGGGGAAACC+AGG + chr3_1:1076724-1076743 None:intergenic 45.0%
CTTGACTTAACTCACGCTTG+GGG + chr3_1:1076803-1076822 None:intergenic 45.0%
GCTTGACTTAACTCACGCTT+GGG + chr3_1:1076804-1076823 None:intergenic 45.0%
TGCTTGACTTAACTCACGCT+TGG + chr3_1:1076805-1076824 None:intergenic 45.0%
CTGCGTGAGTTAAGTTACAC+TGG + chr3_1:1076837-1076856 None:intergenic 45.0%
CAGTGTAACTTAACTCACGC+AGG - chr3_1:1076835-1076854 Msa0343060:intron 45.0%
TTTGCAATTTGGGGGCGAAT+TGG + chr3_1:1076919-1076938 None:intergenic 45.0%
CCTGCGTAAGTTAACTCACA+CGG - chr3_1:1077236-1077255 Msa0343060:intron 45.0%
CTGCGTAAGTTAACTCACAC+GGG - chr3_1:1077237-1077256 Msa0343060:intron 45.0%
TGCGTAAGTTAACTCACACG+GGG - chr3_1:1077238-1077257 Msa0343060:intron 45.0%
!! GATATTTTGGGCAGTTCGGT+TGG - chr3_1:1077260-1077279 Msa0343060:intron 45.0%
GCGAAGGAAATATAAGTGCC+AGG + chr3_1:1077703-1077722 None:intergenic 45.0%
ATTTGTTCCACAAGAGGAGC+AGG - chr3_1:1078122-1078141 Msa0343060:intron 45.0%
ACGATCATGAATTGGGTTCG+TGG - chr3_1:1078270-1078289 Msa0343060:intron 45.0%
GCTGTGAAGCTTCCAAGTAA+AGG + chr3_1:1078297-1078316 None:intergenic 45.0%
GTGAAGATTGCAGGATTCGA+CGG + chr3_1:1078372-1078391 None:intergenic 45.0%
CTTCACTTAGGTGACTGTTG+AGG + chr3_1:1078498-1078517 None:intergenic 45.0%
GGTCGTCACTATCTTCACTT+AGG + chr3_1:1078510-1078529 None:intergenic 45.0%
TACAACAAAACACGTGCTCG+CGG - chr3_1:1078633-1078652 Msa0343060:intron 45.0%
CCTTCAAATTGGGATAGGTG+TGG + chr3_1:1078667-1078686 None:intergenic 45.0%
CCACACCTATCCCAATTTGA+AGG - chr3_1:1078664-1078683 Msa0343060:CDS 45.0%
GTATTCTCCGTGCTTTGACT+GGG - chr3_1:1078687-1078706 Msa0343060:CDS 45.0%
ACCTAAACCCAGTCAAAGCA+CGG + chr3_1:1078697-1078716 None:intergenic 45.0%
TACTCAAACCCATTTGGCGT+TGG - chr3_1:1079456-1079475 Msa0343060:intron 45.0%
AAGATTCCAAGCCAACCACT+AGG + chr3_1:1079482-1079501 None:intergenic 45.0%
!! TAGTGGTTGGCTTGGAATCT+TGG - chr3_1:1079481-1079500 Msa0343060:intron 45.0%
ATTCCCTCTGCTGCCAATTT+CGG - chr3_1:1079533-1079552 Msa0343060:intron 45.0%
GCTCTGTATGGAACCGAAAT+TGG + chr3_1:1079549-1079568 None:intergenic 45.0%
TTCCATACAGAGCTTTGCTC+TGG - chr3_1:1079556-1079575 Msa0343060:intron 45.0%
!! TCTGTTTGGTTCTACAGAGG+CGG - chr3_1:1080233-1080252 Msa0343060:intron 45.0%
TGTTGGGATTGTGAGGTGAT+TGG + chr3_1:1080369-1080388 None:intergenic 45.0%
! GTGTGGTTTGTAGGGGTAAA+TGG + chr3_1:1080557-1080576 None:intergenic 45.0%
CATTTGATCCTTGCACTCCT+CGG - chr3_1:1080670-1080689 Msa0343060:intron 45.0%
CAATCCTCAATGTCATTCGG+GGG + chr3_1:1081055-1081074 None:intergenic 45.0%
CCAATCCTCAATGTCATTCG+GGG + chr3_1:1081056-1081075 None:intergenic 45.0%
!! ACTGTCGTTCTCGAGTTGAT+CGG + chr3_1:1081898-1081917 None:intergenic 45.0%
TATACGAGGTCGGTTGTTGA+AGG - chr3_1:1081948-1081967 Msa0343060:intron 45.0%
TCAGTCTTGCGAAAGAGACA+AGG - chr3_1:1082070-1082089 Msa0343060:intron 45.0%
CAGTCTTGCGAAAGAGACAA+GGG - chr3_1:1082071-1082090 Msa0343060:intron 45.0%
GGGTTGAACAAGGTGAAAAG+TGG - chr3_1:1082091-1082110 Msa0343060:intron 45.0%
ACACTATCATTCACCGCTTC+TGG + chr3_1:1082147-1082166 None:intergenic 45.0%
TGGTTGCGCTATTGTGGAAA+TGG - chr3_1:1082197-1082216 Msa0343060:intron 45.0%
AGAATCCGCATGGAATGTGT+CGG - chr3_1:1082227-1082246 Msa0343060:CDS 45.0%
CATATCCGACACATTCCATG+CGG + chr3_1:1082235-1082254 None:intergenic 45.0%
TTGACGATTCGAATTGGGGT+TGG - chr3_1:1082261-1082280 Msa0343060:CDS 45.0%
!!! TTTTATTAATATTTTCAAAT+AGG + chr3_1:1076378-1076397 None:intergenic 5.0%
!! TTTATAATTAAAGATATTAA+AGG - chr3_1:1076565-1076584 Msa0343060:intron 5.0%
!!! AACAATTATTAAAATATTTT+TGG - chr3_1:1080444-1080463 Msa0343060:intron 5.0%
TAACATTACTTGTGCGGCGG+CGG + chr3_1:1074655-1074674 None:intergenic 50.0%
CACAATACAAGGGAGAGGTG+GGG + chr3_1:1076172-1076191 None:intergenic 50.0%
CCACAATACAAGGGAGAGGT+GGG + chr3_1:1076173-1076192 None:intergenic 50.0%
CCACCTCTCCCTTGTATTGT+GGG - chr3_1:1076171-1076190 Msa0343060:intron 50.0%
CTTTCCTGGCCCACAATACA+AGG + chr3_1:1076183-1076202 None:intergenic 50.0%
!! GACATTTTGGGGAAACCAGG+AGG + chr3_1:1076721-1076740 None:intergenic 50.0%
ACTCATGCGCGAGTTAACTC+AGG + chr3_1:1076869-1076888 None:intergenic 50.0%
!!! GGGGCGAATTGGTTTTTCCT+GGG + chr3_1:1076908-1076927 None:intergenic 50.0%
!!! GGGGGAGAATTGGTTTTTCC+TGG - chr3_1:1077194-1077213 Msa0343060:intron 50.0%
CCGTGTGAGTTAACTTACGC+AGG + chr3_1:1077239-1077258 None:intergenic 50.0%
!! CGGGGATATTTTGGGCAGTT+CGG - chr3_1:1077256-1077275 Msa0343060:intron 50.0%
TAGGTTTCCTGCTCCTCTTG+TGG + chr3_1:1078132-1078151 None:intergenic 50.0%
TGGGTTCGTGGTCCTTTACT+TGG - chr3_1:1078282-1078301 Msa0343060:intron 50.0%
AAGATTGCAGGATTCGACGG+CGG + chr3_1:1078369-1078388 None:intergenic 50.0%
AAATTGGGATAGGTGTGGGC+AGG + chr3_1:1078662-1078681 None:intergenic 50.0%
GGTATTCTCCGTGCTTTGAC+TGG - chr3_1:1078686-1078705 Msa0343060:CDS 50.0%
TCCGTGCTTTGACTGGGTTT+AGG - chr3_1:1078693-1078712 Msa0343060:CDS 50.0%
ATCGAACCTGAGACCTTGAG+AGG + chr3_1:1079515-1079534 None:intergenic 50.0%
GAACCGAAATTGGCAGCAGA+GGG + chr3_1:1079539-1079558 None:intergenic 50.0%
AGCCAGAGCAAAGCTCTGTA+TGG + chr3_1:1079561-1079580 None:intergenic 50.0%
! AGCTTTGCTCTGGCTTAGAG+CGG - chr3_1:1079566-1079585 Msa0343060:intron 50.0%
!! GGGTCTGTTTGGTTCTACAG+AGG - chr3_1:1080230-1080249 Msa0343060:intron 50.0%
! TTTAGTCACCGAGGAGTGCA+AGG + chr3_1:1080681-1080700 None:intergenic 50.0%
TTAGCCCCCGAATGACATTG+AGG - chr3_1:1081048-1081067 Msa0343060:intron 50.0%
CCCCGAATGACATTGAGGAT+TGG - chr3_1:1081053-1081072 Msa0343060:intron 50.0%
! GACATTGAGGATTGGTGAGG+AGG - chr3_1:1081061-1081080 Msa0343060:intron 50.0%
GATCAACTCGAGAACGACAG+TGG - chr3_1:1081897-1081916 Msa0343060:intron 50.0%
GGTGAAAAGTGGCGATCAAG+AGG - chr3_1:1082102-1082121 Msa0343060:intron 50.0%
CCAAGAGCCCATATATCCGT+TGG + chr3_1:1082180-1082199 None:intergenic 50.0%
CCAACGGATATATGGGCTCT+TGG - chr3_1:1082177-1082196 Msa0343060:intron 50.0%
TGGTTACTGGAGAATCCGCA+TGG - chr3_1:1082217-1082236 Msa0343060:CDS 50.0%
GAAATCGATGGAGCAGTCGC+TGG - chr3_1:1075079-1075098 Msa0343060:CDS 55.0%
GAAATCGATGGAGCAGTCGC+TGG - chr3_1:1075079-1075098 Msa0343060:CDS 55.0%
CCCACCTCTCCCTTGTATTG+TGG - chr3_1:1076170-1076189 Msa0343060:intron 55.0%
CCCACAATACAAGGGAGAGG+TGG + chr3_1:1076174-1076193 None:intergenic 55.0%
TGGCCCACAATACAAGGGAG+AGG + chr3_1:1076177-1076196 None:intergenic 55.0%
TCTCCCTTGTATTGTGGGCC+AGG - chr3_1:1076176-1076195 Msa0343060:intron 55.0%
!!! GGGGGCGAATTGGTTTTTCC+TGG + chr3_1:1076909-1076928 None:intergenic 55.0%
! TTTTGGGCAGTTCGGTTGGG+AGG - chr3_1:1077264-1077283 Msa0343060:intron 55.0%
CCACTAGGCCAACGCCAAAT+GGG + chr3_1:1079467-1079486 None:intergenic 55.0%
ACCACTAGGCCAACGCCAAA+TGG + chr3_1:1079468-1079487 None:intergenic 55.0%
!! TTTGGCGTTGGCCTAGTGGT+TGG - chr3_1:1079468-1079487 Msa0343060:intron 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr3_1:1079499-1079518 Msa0343060:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - chr3_1:1079506-1079525 Msa0343060:intron 55.0%
GGAACCGAAATTGGCAGCAG+AGG + chr3_1:1079540-1079559 None:intergenic 55.0%
! GCTTTGCTCTGGCTTAGAGC+GGG - chr3_1:1079567-1079586 Msa0343060:intron 55.0%
! CTTTGCTCTGGCTTAGAGCG+GGG - chr3_1:1079568-1079587 Msa0343060:intron 55.0%
!! TTGGTTCTACAGAGGCGGAG+TGG - chr3_1:1080238-1080257 Msa0343060:intron 55.0%
! TGGTTCTACAGAGGCGGAGT+GGG - chr3_1:1080239-1080258 Msa0343060:intron 55.0%
GTGAGGAGGAGACTGAAGCT+TGG - chr3_1:1081075-1081094 Msa0343060:intron 55.0%
CGACACATGAGATTGGGAGC+AGG - chr3_1:1081751-1081770 Msa0343060:intron 55.0%
GAACGACAGTGGTGAGCTCT+CGG - chr3_1:1081908-1081927 Msa0343060:intron 55.0%
GTGGCGATCAAGAGGAACTC+CGG - chr3_1:1082110-1082129 Msa0343060:intron 55.0%
GGCTCTTGGTTGCGCTATTG+TGG - chr3_1:1082191-1082210 Msa0343060:intron 55.0%
GATTCGACGGCGGTGAGAGA+CGG + chr3_1:1078359-1078378 None:intergenic 60.0%
!! CCCATTTGGCGTTGGCCTAG+TGG - chr3_1:1079464-1079483 Msa0343060:intron 60.0%
! CGTTGGCCTAGTGGTTGGCT+TGG - chr3_1:1079473-1079492 Msa0343060:intron 60.0%
GGTTCTACAGAGGCGGAGTG+GGG - chr3_1:1080240-1080259 Msa0343060:intron 60.0%
GACGGCGGTGAGAGACGGAA+TGG + chr3_1:1078354-1078373 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 1074611 1082449 1074611 ID=Msa0343060;Name=Msa0343060
chr3_1 mRNA 1074611 1082449 1074611 ID=Msa0343060-mRNA-1;Parent=Msa0343060;Name=Msa0343060-mRNA-1;_AED=0.38;_eAED=0.49;_QI=0|0|0|1|0|0|4|0|295
chr3_1 exon 1082215 1082449 1082215 ID=Msa0343060-mRNA-1:exon:356;Parent=Msa0343060-mRNA-1
chr3_1 exon 1078639 1078744 1078639 ID=Msa0343060-mRNA-1:exon:355;Parent=Msa0343060-mRNA-1
chr3_1 exon 1075066 1075179 1075066 ID=Msa0343060-mRNA-1:exon:354;Parent=Msa0343060-mRNA-1
chr3_1 exon 1074611 1075043 1074611 ID=Msa0343060-mRNA-1:exon:353;Parent=Msa0343060-mRNA-1
chr3_1 CDS 1082215 1082449 1082215 ID=Msa0343060-mRNA-1:cds;Parent=Msa0343060-mRNA-1
chr3_1 CDS 1078639 1078744 1078639 ID=Msa0343060-mRNA-1:cds;Parent=Msa0343060-mRNA-1
chr3_1 CDS 1075066 1075179 1075066 ID=Msa0343060-mRNA-1:cds;Parent=Msa0343060-mRNA-1
chr3_1 CDS 1074611 1075043 1074611 ID=Msa0343060-mRNA-1:cds;Parent=Msa0343060-mRNA-1
Gene Sequence

>Msa0343060

ATGGTGAAACTGCTGAACGTTTTGAAGCATGCATCTCAATGCCGCCGCCGCACAAGTAATGTTAAGCCATGCTCTCATCCAAACTGTTCTCAAATGAAGAAGTTGTTCTATCATGCCAGTAAGTGCAAAATTCGAGTAAATGGGGGCTGCCAGCATTGCAAACAGATATGGTTTATACTAACCGCTCACTCCAGGAATTGCAAAGACTCGGAATGTAGAATACCACGCTGCAGATCCGTCTATTTAGCCAAACACCTAAAGACTCAGTTACCATTCCGTCTCTCACCGCCGTCGAATCCTGCAATCTTCACAACTCATATCCTCTCCAAAACGAGAAACAATGGTGGAACTCTCTCCGATCAACTCGAGAACGACAGTGGTGAGCTCTCGGAGAACCTCATTAGTCGTTATACGAGGTCGGTTGTTGAAGGACTCAAGTATATTCACAAAAAAGGTTGGTTGCCCAACATTCTCGTATTCGAGAATGGAAACATTAAAATTTCAGATTTCAGTCTTGCGAAAGAGACAAGGGTTGAACAAGGTGAAAAGTGGCGATCAAGAGGAACTCCGGTAATTATGTCACCAGAAGCGGTGAATGATAGTGTGTATGAATCGCCAACGGATATATGGGCTCTTGGTTGCGCTATTGTGGAAATGGTTACTGGAGAATCCGCATGGAATGTGTCGGATATGTTGATGTTGACGATTCGAATTGGGGTTGGAGAAGAATTACCAAAAATTCCAGATGAATTATTACGAGAAGGGATAGATTTTCTTGAAAAGTGTTTCGTTAAGGATCCTTTGAGAAGATGGACGATAGATCTGCTTTTGAAACATCCGTTTATCTCCGATGTTGAAAATGTTTCAGTTGTAACAGAGTTAAGTTGA
Protein sequence

>Msa0343060

MVKLLNVLKHASQCRRRTSNVKPCSHPNCSQMKKLFYHASKCKIRVNGGCQHCKQIWFILTAHSRNCKDSECRIPRCRSVYLAKHLKTQLPFRLSPPSNPAIFTTHILSKTRNNGGTLSDQLENDSGELSENLISRYTRSVVEGLKYIHKKGWLPNILVFENGNIKISDFSLAKETRVEQGEKWRSRGTPVIMSPEAVNDSVYESPTDIWALGCAIVEMVTGESAWNVSDMLMLTIRIGVGEELPKIPDELLREGIDFLEKCFVKDPLRRWTIDLLLKHPFISDVENVSVVTELS*