Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343180 | GAU45400.1 | 67.101 | 307 | 79 | 3 | 48 | 353 | 12 | 297 | 4.28e-145 | 428 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343180 | sp|Q9SZL8|FRS5_ARATH | 32.803 | 314 | 196 | 8 | 46 | 351 | 20 | 326 | 2.68e-33 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343180 | A0A2Z6P7V3 | 67.101 | 307 | 79 | 3 | 48 | 353 | 12 | 297 | 2.04e-145 | 428 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0343180 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343180 | MtrunA17_Chr2g0287651 | 47.101 | 276 | 133 | 3 | 94 | 365 | 68 | 334 | 1.10e-80 | 266 |
| Msa0343180 | MtrunA17_Chr1g0203051 | 31.250 | 304 | 188 | 5 | 64 | 352 | 34 | 331 | 4.39e-44 | 163 |
| Msa0343180 | MtrunA17_Chr1g0202341 | 33.803 | 284 | 168 | 7 | 100 | 376 | 50 | 320 | 5.84e-38 | 146 |
| Msa0343180 | MtrunA17_Chr1g0198761 | 35.271 | 258 | 154 | 6 | 107 | 352 | 53 | 309 | 4.21e-34 | 135 |
| Msa0343180 | MtrunA17_Chr5g0448761 | 35.019 | 257 | 154 | 6 | 105 | 351 | 64 | 317 | 6.57e-34 | 135 |
| Msa0343180 | MtrunA17_Chr5g0441581 | 31.203 | 266 | 158 | 6 | 105 | 364 | 36 | 282 | 3.27e-33 | 132 |
| Msa0343180 | MtrunA17_Chr8g0363841 | 30.451 | 266 | 168 | 5 | 97 | 351 | 9 | 268 | 4.69e-32 | 129 |
| Msa0343180 | MtrunA17_Chr5g0431001 | 33.206 | 262 | 156 | 6 | 107 | 353 | 67 | 324 | 1.74e-30 | 123 |
| Msa0343180 | MtrunA17_Chr7g0258861 | 29.078 | 282 | 171 | 7 | 105 | 373 | 14 | 279 | 2.70e-29 | 116 |
| Msa0343180 | MtrunA17_Chr2g0324011 | 28.897 | 263 | 175 | 4 | 105 | 365 | 14 | 266 | 8.71e-29 | 119 |
| Msa0343180 | MtrunA17_Chr2g0290391 | 30.682 | 264 | 165 | 5 | 105 | 352 | 55 | 316 | 3.42e-27 | 114 |
| Msa0343180 | MtrunA17_Chr2g0296781 | 30.522 | 249 | 167 | 5 | 105 | 352 | 1 | 244 | 6.09e-27 | 114 |
| Msa0343180 | MtrunA17_Chr2g0276841 | 30.502 | 259 | 170 | 7 | 107 | 358 | 76 | 331 | 1.60e-25 | 109 |
| Msa0343180 | MtrunA17_Chr1g0196541 | 31.890 | 254 | 157 | 7 | 105 | 352 | 1 | 244 | 8.55e-25 | 107 |
| Msa0343180 | MtrunA17_Chr2g0291591 | 32.819 | 259 | 156 | 7 | 102 | 353 | 65 | 312 | 1.95e-24 | 106 |
| Msa0343180 | MtrunA17_Chr3g0082121 | 28.740 | 254 | 166 | 7 | 104 | 353 | 46 | 288 | 6.27e-23 | 102 |
| Msa0343180 | MtrunA17_Chr2g0294841 | 30.315 | 254 | 166 | 6 | 107 | 350 | 51 | 303 | 7.56e-23 | 101 |
| Msa0343180 | MtrunA17_Chr6g0458391 | 27.907 | 301 | 167 | 10 | 105 | 389 | 229 | 495 | 1.22e-22 | 101 |
| Msa0343180 | MtrunA17_Chr6g0477261 | 41.071 | 112 | 66 | 0 | 241 | 352 | 22 | 133 | 2.52e-21 | 97.1 |
| Msa0343180 | MtrunA17_Chr2g0287061 | 31.154 | 260 | 136 | 9 | 106 | 362 | 188 | 407 | 2.53e-21 | 97.1 |
| Msa0343180 | MtrunA17_Chr1g0203721 | 27.888 | 251 | 174 | 6 | 107 | 352 | 69 | 317 | 2.57e-21 | 97.1 |
| Msa0343180 | MtrunA17_Chr2g0291581 | 28.947 | 266 | 161 | 8 | 105 | 364 | 75 | 318 | 3.51e-21 | 96.7 |
| Msa0343180 | MtrunA17_Chr1g0207551 | 29.435 | 248 | 171 | 4 | 105 | 351 | 38 | 282 | 6.70e-21 | 95.9 |
| Msa0343180 | MtrunA17_Chr5g0440451 | 27.547 | 265 | 161 | 8 | 105 | 351 | 47 | 298 | 4.47e-18 | 87.4 |
| Msa0343180 | MtrunA17_Chr3g0080351 | 26.374 | 273 | 153 | 7 | 96 | 349 | 71 | 314 | 8.74e-18 | 86.3 |
| Msa0343180 | MtrunA17_Chr2g0329031 | 24.535 | 269 | 176 | 5 | 94 | 353 | 7 | 257 | 1.06e-16 | 82.8 |
| Msa0343180 | MtrunA17_Chr1g0164591 | 28.313 | 166 | 110 | 2 | 188 | 353 | 12 | 168 | 2.21e-15 | 77.0 |
| Msa0343180 | MtrunA17_Chr8g0340801 | 33.945 | 109 | 70 | 1 | 209 | 317 | 1 | 107 | 1.02e-14 | 70.1 |
| Msa0343180 | MtrunA17_Chr5g0448511 | 40.000 | 85 | 51 | 0 | 267 | 351 | 5 | 89 | 3.07e-12 | 68.6 |
| Msa0343180 | MtrunA17_Chr3g0118611 | 31.538 | 130 | 81 | 3 | 226 | 351 | 70 | 195 | 3.70e-12 | 68.6 |
| Msa0343180 | MtrunA17_Chr6g0451441 | 24.345 | 267 | 154 | 8 | 9 | 265 | 18 | 246 | 8.13e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343180 | AT4G38180.1 | 32.803 | 314 | 196 | 8 | 46 | 351 | 20 | 326 | 2.73e-34 | 136 |
| Msa0343180 | AT5G28530.3 | 33.333 | 261 | 158 | 5 | 107 | 352 | 61 | 320 | 1.04e-31 | 128 |
| Msa0343180 | AT5G28530.2 | 33.333 | 261 | 158 | 5 | 107 | 352 | 61 | 320 | 1.04e-31 | 128 |
| Msa0343180 | AT5G28530.1 | 33.333 | 261 | 158 | 5 | 107 | 352 | 61 | 320 | 1.13e-31 | 128 |
| Msa0343180 | AT1G10240.2 | 32.319 | 263 | 160 | 8 | 107 | 358 | 54 | 309 | 1.65e-27 | 116 |
| Msa0343180 | AT1G10240.1 | 32.319 | 263 | 160 | 8 | 107 | 358 | 54 | 309 | 1.65e-27 | 116 |
| Msa0343180 | AT4G15090.1 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 3.12e-25 | 109 |
| Msa0343180 | AT4G15090.5 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 3.12e-25 | 109 |
| Msa0343180 | AT4G15090.3 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 3.12e-25 | 109 |
| Msa0343180 | AT4G15090.2 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 3.12e-25 | 109 |
| Msa0343180 | AT4G15090.4 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 3.12e-25 | 109 |
| Msa0343180 | AT4G19990.7 | 29.054 | 296 | 149 | 10 | 79 | 351 | 6 | 263 | 2.32e-20 | 94.7 |
| Msa0343180 | AT3G06250.2 | 29.675 | 246 | 133 | 5 | 105 | 349 | 194 | 400 | 3.08e-20 | 94.4 |
| Msa0343180 | AT3G06250.1 | 29.675 | 246 | 133 | 5 | 105 | 349 | 194 | 400 | 3.08e-20 | 94.4 |
| Msa0343180 | AT3G06250.3 | 29.675 | 246 | 133 | 5 | 105 | 349 | 194 | 400 | 3.08e-20 | 94.4 |
| Msa0343180 | AT4G19990.3 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 5.94e-20 | 93.2 |
| Msa0343180 | AT4G19990.4 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 5.94e-20 | 93.2 |
| Msa0343180 | AT4G19990.5 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 6.55e-20 | 93.2 |
| Msa0343180 | AT4G19990.6 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 6.99e-20 | 93.2 |
| Msa0343180 | AT4G19990.2 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 6.99e-20 | 93.2 |
| Msa0343180 | AT1G76320.2 | 28.148 | 270 | 160 | 8 | 105 | 362 | 1 | 248 | 8.76e-19 | 89.7 |
| Msa0343180 | AT1G76320.1 | 28.148 | 270 | 160 | 8 | 105 | 362 | 1 | 248 | 8.86e-19 | 89.7 |
| Msa0343180 | AT1G76320.4 | 28.148 | 270 | 160 | 8 | 105 | 362 | 1 | 248 | 8.86e-19 | 89.7 |
| Msa0343180 | AT1G76320.3 | 28.148 | 270 | 160 | 8 | 105 | 362 | 1 | 248 | 9.05e-19 | 89.7 |
| Msa0343180 | AT1G52520.1 | 29.457 | 258 | 153 | 8 | 105 | 353 | 89 | 326 | 3.30e-18 | 87.8 |
| Msa0343180 | AT5G28530.5 | 32.768 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 3.77e-18 | 87.4 |
| Msa0343180 | AT5G28530.4 | 32.768 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 4.07e-18 | 87.4 |
| Msa0343180 | AT4G19990.1 | 45.783 | 83 | 45 | 0 | 269 | 351 | 110 | 192 | 1.16e-17 | 86.3 |
| Msa0343180 | AT3G22170.2 | 24.151 | 265 | 162 | 5 | 100 | 349 | 69 | 309 | 2.13e-17 | 85.5 |
| Msa0343180 | AT3G22170.1 | 24.151 | 265 | 162 | 5 | 100 | 349 | 69 | 309 | 2.13e-17 | 85.5 |
| Msa0343180 | AT2G27110.2 | 24.901 | 253 | 154 | 5 | 105 | 352 | 53 | 274 | 3.63e-17 | 84.7 |
| Msa0343180 | AT2G27110.1 | 24.901 | 253 | 154 | 5 | 105 | 352 | 53 | 274 | 3.63e-17 | 84.7 |
| Msa0343180 | AT1G80010.1 | 28.669 | 293 | 167 | 13 | 80 | 352 | 79 | 349 | 6.91e-17 | 84.0 |
| Msa0343180 | AT5G18960.2 | 27.935 | 247 | 139 | 7 | 105 | 349 | 215 | 424 | 1.19e-16 | 83.2 |
| Msa0343180 | AT5G18960.1 | 27.935 | 247 | 139 | 7 | 105 | 349 | 215 | 424 | 1.19e-16 | 83.2 |
| Msa0343180 | AT2G27110.3 | 40.506 | 79 | 47 | 0 | 274 | 352 | 51 | 129 | 4.98e-13 | 71.6 |
| Msa0343180 | AT2G32250.2 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 3.19e-11 | 66.2 |
| Msa0343180 | AT2G32250.4 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 3.19e-11 | 66.2 |
| Msa0343180 | AT2G32250.5 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 3.28e-11 | 65.9 |
| Msa0343180 | AT2G32250.6 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 3.42e-11 | 65.9 |
| Msa0343180 | AT2G32250.1 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 3.42e-11 | 65.9 |
| Msa0343180 | AT2G32250.3 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 3.42e-11 | 65.9 |
| Msa0343180 | AT2G32250.8 | 26.275 | 255 | 126 | 7 | 105 | 349 | 1 | 203 | 3.78e-11 | 65.9 |
| Msa0343180 | AT2G32250.7 | 26.275 | 255 | 126 | 7 | 105 | 349 | 1 | 203 | 4.13e-11 | 65.9 |
| Msa0343180 | AT4G38170.1 | 50.000 | 58 | 26 | 2 | 306 | 362 | 45 | 100 | 7.11e-11 | 64.7 |
Find 99 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTACTTTGAGTTACTTCC+AGG | 0.237219 | 3_1:+1203432 | Msa0343180:CDS |
| TCACTCAATTTGCGGTAATT+AGG | 0.258248 | 3_1:-1203235 | None:intergenic |
| ATCATCAGCAATAGGGCTTT+TGG | 0.276381 | 3_1:-1204546 | None:intergenic |
| TCCATACTTGTTCTTTCTAT+AGG | 0.305560 | 3_1:-1203593 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 3_1:+1203351 | Msa0343180:CDS |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 3_1:-1203345 | None:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | 3_1:+1202898 | Msa0343180:CDS |
| CCCCTTGCCATAGGGGTAAA+GGG | 0.347960 | 3_1:+1203662 | Msa0343180:CDS |
| ACCTATAGAAAGAACAAGTA+TGG | 0.349144 | 3_1:+1203592 | Msa0343180:CDS |
| GAAGATTCATCATCAGCAAT+AGG | 0.352394 | 3_1:-1204554 | None:intergenic |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | 3_1:+1203146 | Msa0343180:CDS |
| TATTGCTGATGGCGGCTCGC+TGG | 0.361638 | 3_1:+1204597 | Msa0343180:CDS |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | 3_1:+1202891 | Msa0343180:CDS |
| GAGTTTACATTTACAGATGA+TGG | 0.367609 | 3_1:+1203487 | Msa0343180:CDS |
| AGGGGTAAAGGGGTTATATA+TGG | 0.369420 | 3_1:+1203673 | Msa0343180:CDS |
| AGGTTTGACTATGAGTGTTT+TGG | 0.377109 | 3_1:+1203547 | Msa0343180:CDS |
| TGTAAGAACATGTCATATCT+TGG | 0.384991 | 3_1:+1203297 | Msa0343180:CDS |
| TGGGTATAACACGACACTTT+TGG | 0.385145 | 3_1:-1204620 | None:intergenic |
| TTGCTGTAGAGTAACTTGTT+TGG | 0.396662 | 3_1:-1204352 | None:intergenic |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 3_1:+1203378 | Msa0343180:CDS |
| TTTGGGCAGATTCTACTAGT+AGG | 0.409763 | 3_1:+1203527 | Msa0343180:CDS |
| ACCCCTTGCCATAGGGGTAA+AGG | 0.431308 | 3_1:+1203661 | Msa0343180:CDS |
| TGCGGTAATTAGGCATCAAA+TGG | 0.435720 | 3_1:-1203225 | None:intergenic |
| AATAGCGTGCTATAGGAGTA+TGG | 0.437326 | 3_1:-1204660 | None:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | 3_1:-1203107 | None:intergenic |
| TATCAACTTCACTCAATTTG+CGG | 0.446828 | 3_1:-1203243 | None:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 3_1:+1203337 | Msa0343180:CDS |
| GCAAGGGTTAAAATAAAAGA+TGG | 0.464290 | 3_1:+1203400 | Msa0343180:CDS |
| AAGATTCATCATCAGCAATA+GGG | 0.464525 | 3_1:-1204553 | None:intergenic |
| ATACTTGTTCTTTCTATAGG+TGG | 0.464692 | 3_1:-1203590 | None:intergenic |
| GTAAGAACATGTCATATCTT+GGG | 0.467321 | 3_1:+1203298 | Msa0343180:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 3_1:+1203033 | Msa0343180:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.469712 | 3_1:-1203198 | None:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 3_1:-1203093 | None:intergenic |
| CCCCTTTACCCCTATGGCAA+GGG | 0.471821 | 3_1:-1203663 | None:intergenic |
| AGGACTGAGTCCAAGATGAT+AGG | 0.475000 | 3_1:+1204512 | Msa0343180:CDS |
| TTTGAGTTACTTCCAGGGTA+AGG | 0.478060 | 3_1:+1203438 | Msa0343180:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 3_1:+1202851 | Msa0343180:CDS |
| GGCAAGGGGTTGTTTCTCCA+TGG | 0.482176 | 3_1:-1203648 | None:intergenic |
| ATGTGAAACGTGATTCTAAT+GGG | 0.492055 | 3_1:+1202999 | Msa0343180:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 3_1:+1203369 | Msa0343180:CDS |
| CTACGAGTTTGAAGTAAGAA+AGG | 0.503537 | 3_1:+1202973 | Msa0343180:CDS |
| ATATAACCCCTTTACCCCTA+TGG | 0.505461 | 3_1:-1203669 | None:intergenic |
| GTATCACTATATACATCAAA+AGG | 0.509968 | 3_1:-1202632 | None:intergenic |
| CAAGGGTTAAAATAAAAGAT+GGG | 0.510385 | 3_1:+1203401 | Msa0343180:CDS |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 3_1:+1203331 | Msa0343180:CDS |
| GATGTGAAACGTGATTCTAA+TGG | 0.514927 | 3_1:+1202998 | Msa0343180:CDS |
| GTTTGCTAAGCTCAGCAAGA+AGG | 0.520099 | 3_1:+1204492 | Msa0343180:intron |
| GCCTCGGACTATCAGAGTGC+AGG | 0.524275 | 3_1:+1204316 | Msa0343180:CDS |
| GAGAAACAACCCCTTGCCAT+AGG | 0.525206 | 3_1:+1203653 | Msa0343180:CDS |
| TTGCAAGCCGCCTATCATCT+TGG | 0.527236 | 3_1:-1204522 | None:intergenic |
| AGAAACAACCCCTTGCCATA+GGG | 0.527759 | 3_1:+1203654 | Msa0343180:CDS |
| AATAAGGAGGGTATTAATGA+TGG | 0.529187 | 3_1:+1203049 | Msa0343180:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | 3_1:-1203188 | None:intergenic |
| AGCAACGATGTTTGTACTGA+CGG | 0.549220 | 3_1:+1202779 | Msa0343180:CDS |
| TGGTAGCGACTAGCAGTGGT+TGG | 0.553705 | 3_1:-1204640 | None:intergenic |
| AAGGGGTTGTTTCTCCATGG+TGG | 0.566504 | 3_1:-1203645 | None:intergenic |
| ACCCCTTTACCCCTATGGCA+AGG | 0.568144 | 3_1:-1203664 | None:intergenic |
| CGAGCCGCCATCAGCAATAG+CGG | 0.571864 | 3_1:-1204593 | None:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 3_1:+1202815 | Msa0343180:CDS |
| TCAATTAGTATGCAATAAGG+AGG | 0.578737 | 3_1:+1203036 | Msa0343180:CDS |
| CCCTTTACCCCTATGGCAAG+GGG | 0.579715 | 3_1:-1203662 | None:intergenic |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | 3_1:+1202892 | Msa0343180:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | 3_1:-1203187 | None:intergenic |
| TATCAGTATCAGCCTTACCC+TGG | 0.582368 | 3_1:-1203450 | None:intergenic |
| ATATATGCAGAACACCTCAA+TGG | 0.583601 | 3_1:-1203713 | None:intergenic |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 3_1:+1203338 | Msa0343180:CDS |
| TGTGCAACCGCTATTGCTGA+TGG | 0.589432 | 3_1:+1204586 | Msa0343180:CDS |
| GGTAGCGACTAGCAGTGGTT+GGG | 0.589687 | 3_1:-1204639 | None:intergenic |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 3_1:+1203383 | Msa0343180:CDS |
| CCCTTGCCATAGGGGTAAAG+GGG | 0.596187 | 3_1:+1203663 | Msa0343180:CDS |
| ATATAGTGATACAGATGAGG+TGG | 0.607738 | 3_1:+1202643 | Msa0343180:CDS |
| GCTACTTTGAGTTACTTCCA+GGG | 0.608783 | 3_1:+1203433 | Msa0343180:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 3_1:+1202689 | Msa0343180:CDS |
| TATGCAGAACACCTCAATGG+TGG | 0.616308 | 3_1:-1203710 | None:intergenic |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 3_1:+1203259 | Msa0343180:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 3_1:+1202694 | Msa0343180:CDS |
| AAGGGTTAAAATAAAAGATG+GGG | 0.619179 | 3_1:+1203402 | Msa0343180:CDS |
| GAAACAACCCCTTGCCATAG+GGG | 0.626017 | 3_1:+1203655 | Msa0343180:CDS |
| ATGCAGAACACCTCAATGGT+GGG | 0.628893 | 3_1:-1203709 | None:intergenic |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 3_1:+1203384 | Msa0343180:CDS |
| TTTAGTGGATATAACCACCA+TGG | 0.638528 | 3_1:+1203631 | Msa0343180:CDS |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 3_1:-1202826 | None:intergenic |
| GCCTGCACTCTGATAGTCCG+AGG | 0.642470 | 3_1:-1204317 | None:intergenic |
| TGACGGAGATGCAGACGGTG+TGG | 0.643271 | 3_1:+1202796 | Msa0343180:CDS |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 3_1:+1202833 | Msa0343180:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 3_1:+1203274 | Msa0343180:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | 3_1:-1203211 | None:intergenic |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 3_1:+1202834 | Msa0343180:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 3_1:+1202690 | Msa0343180:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.667584 | 3_1:+1203037 | Msa0343180:CDS |
| AGTATGGTAGCGACTAGCAG+TGG | 0.667677 | 3_1:-1204644 | None:intergenic |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 3_1:+1202809 | Msa0343180:CDS |
| GCAACCGCTATTGCTGATGG+CGG | 0.689020 | 3_1:+1204589 | Msa0343180:CDS |
| ACTGAGTCCAAGATGATAGG+CGG | 0.689094 | 3_1:+1204515 | Msa0343180:CDS |
| TGTATATAGTGATACAGATG+AGG | 0.703043 | 3_1:+1202640 | Msa0343180:CDS |
| TGTACTGACGGAGATGCAGA+CGG | 0.719254 | 3_1:+1202791 | Msa0343180:CDS |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 3_1:+1202691 | Msa0343180:CDS |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 3_1:+1202913 | Msa0343180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATGTTTTTTTTTTGAAT+CGG | - | chr3_1:1203813-1203832 | None:intergenic | 10.0% |
| !!! | CAATTTTATTTATGTTTTTA+GGG | - | chr3_1:1204022-1204041 | None:intergenic | 10.0% |
| !!! | TCAATTTTATTTATGTTTTT+AGG | - | chr3_1:1204023-1204042 | None:intergenic | 10.0% |
| !!! | TATATGTTTTTTTTTTGAAT+CGG | - | chr3_1:1203813-1203832 | None:intergenic | 10.0% |
| !!! | CAATTTTATTTATGTTTTTA+GGG | - | chr3_1:1204022-1204041 | None:intergenic | 10.0% |
| !!! | TCAATTTTATTTATGTTTTT+AGG | - | chr3_1:1204023-1204042 | None:intergenic | 10.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | chr3_1:1203369-1203388 | Msa0343180:CDS | 20.0% |
| !!! | CATAAATTTTATACAAGATC+AGG | + | chr3_1:1203874-1203893 | Msa0343180:intron | 20.0% |
| !!! | ATTTTATTAAAACGAGTTCA+AGG | + | chr3_1:1204140-1204159 | Msa0343180:intron | 20.0% |
| !!! | TTTTATTAAAACGAGTTCAA+GGG | + | chr3_1:1204141-1204160 | Msa0343180:intron | 20.0% |
| !! | GAGTTTAAATCATATTAAAG+TGG | - | chr3_1:1204467-1204486 | None:intergenic | 20.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | chr3_1:1203369-1203388 | Msa0343180:CDS | 20.0% |
| !!! | CATAAATTTTATACAAGATC+AGG | + | chr3_1:1203874-1203893 | Msa0343180:intron | 20.0% |
| !!! | ATTTTATTAAAACGAGTTCA+AGG | + | chr3_1:1204140-1204159 | Msa0343180:intron | 20.0% |
| !!! | TTTTATTAAAACGAGTTCAA+GGG | + | chr3_1:1204141-1204160 | Msa0343180:intron | 20.0% |
| !! | GAGTTTAAATCATATTAAAG+TGG | - | chr3_1:1204467-1204486 | None:intergenic | 20.0% |
| ! | GTATCACTATATACATCAAA+AGG | - | chr3_1:1202635-1202654 | None:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | chr3_1:1203067-1203086 | Msa0343180:CDS | 25.0% |
| ! | CAAGGGTTAAAATAAAAGAT+GGG | + | chr3_1:1203401-1203420 | Msa0343180:CDS | 25.0% |
| ! | AAGGGTTAAAATAAAAGATG+GGG | + | chr3_1:1203402-1203421 | Msa0343180:CDS | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | - | chr3_1:1203623-1203642 | None:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | - | chr3_1:1203624-1203643 | None:intergenic | 25.0% |
| !! | CTTTTGTATTTATCTCTTTG+TGG | + | chr3_1:1203742-1203761 | Msa0343180:intron | 25.0% |
| ! | GACATATGAGTATACTTAAA+TGG | + | chr3_1:1203896-1203915 | Msa0343180:intron | 25.0% |
| ! | TTTATTAAAACGAGTTCAAG+GGG | + | chr3_1:1204142-1204161 | Msa0343180:intron | 25.0% |
| ! | TCATGTAATTTCATCGTAAT+AGG | - | chr3_1:1204177-1204196 | None:intergenic | 25.0% |
| !! | ATATAGCATGATTTTACAGA+AGG | + | chr3_1:1204238-1204257 | Msa0343180:intron | 25.0% |
| ! | GTATCACTATATACATCAAA+AGG | - | chr3_1:1202635-1202654 | None:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | chr3_1:1203067-1203086 | Msa0343180:CDS | 25.0% |
| ! | CAAGGGTTAAAATAAAAGAT+GGG | + | chr3_1:1203401-1203420 | Msa0343180:CDS | 25.0% |
| ! | AAGGGTTAAAATAAAAGATG+GGG | + | chr3_1:1203402-1203421 | Msa0343180:CDS | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | - | chr3_1:1203623-1203642 | None:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | - | chr3_1:1203624-1203643 | None:intergenic | 25.0% |
| !! | CTTTTGTATTTATCTCTTTG+TGG | + | chr3_1:1203742-1203761 | Msa0343180:intron | 25.0% |
| ! | GACATATGAGTATACTTAAA+TGG | + | chr3_1:1203896-1203915 | Msa0343180:intron | 25.0% |
| ! | TTTATTAAAACGAGTTCAAG+GGG | + | chr3_1:1204142-1204161 | Msa0343180:intron | 25.0% |
| ! | TCATGTAATTTCATCGTAAT+AGG | - | chr3_1:1204177-1204196 | None:intergenic | 25.0% |
| !! | ATATAGCATGATTTTACAGA+AGG | + | chr3_1:1204238-1204257 | Msa0343180:intron | 25.0% |
| TGTATATAGTGATACAGATG+AGG | + | chr3_1:1202640-1202659 | Msa0343180:CDS | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | chr3_1:1202891-1202910 | Msa0343180:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | chr3_1:1202892-1202911 | Msa0343180:CDS | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | chr3_1:1202898-1202917 | Msa0343180:CDS | 30.0% | |
| ATGTGAAACGTGATTCTAAT+GGG | + | chr3_1:1202999-1203018 | Msa0343180:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | chr3_1:1203036-1203055 | Msa0343180:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | chr3_1:1203037-1203056 | Msa0343180:CDS | 30.0% | |
| !! | AATAAGGAGGGTATTAATGA+TGG | + | chr3_1:1203049-1203068 | Msa0343180:CDS | 30.0% |
| TATCAACTTCACTCAATTTG+CGG | - | chr3_1:1203246-1203265 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | chr3_1:1203297-1203316 | Msa0343180:CDS | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | chr3_1:1203298-1203317 | Msa0343180:CDS | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | + | chr3_1:1203378-1203397 | Msa0343180:CDS | 30.0% | |
| GCAAGGGTTAAAATAAAAGA+TGG | + | chr3_1:1203400-1203419 | Msa0343180:CDS | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | chr3_1:1203487-1203506 | Msa0343180:CDS | 30.0% | |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | chr3_1:1203510-1203529 | Msa0343180:CDS | 30.0% |
| ATACTTGTTCTTTCTATAGG+TGG | - | chr3_1:1203593-1203612 | None:intergenic | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | chr3_1:1203592-1203611 | Msa0343180:CDS | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | chr3_1:1203596-1203615 | None:intergenic | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | chr3_1:1203622-1203641 | None:intergenic | 30.0% | |
| !!! | GGGTTATATATGGAGTTTTT+TGG | + | chr3_1:1203683-1203702 | Msa0343180:CDS | 30.0% |
| CAAAATTTATTAAGCCAAGG+AGG | - | chr3_1:1203790-1203809 | None:intergenic | 30.0% | |
| ACTTAATTGAAGCTACTCTT+TGG | - | chr3_1:1204097-1204116 | None:intergenic | 30.0% | |
| ! | ATGTGGTTGATTCATGTAAT+TGG | - | chr3_1:1204293-1204312 | None:intergenic | 30.0% |
| AAGATTCATCATCAGCAATA+GGG | - | chr3_1:1204556-1204575 | None:intergenic | 30.0% | |
| TGTATATAGTGATACAGATG+AGG | + | chr3_1:1202640-1202659 | Msa0343180:CDS | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | chr3_1:1202891-1202910 | Msa0343180:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | chr3_1:1202892-1202911 | Msa0343180:CDS | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | chr3_1:1202898-1202917 | Msa0343180:CDS | 30.0% | |
| ATGTGAAACGTGATTCTAAT+GGG | + | chr3_1:1202999-1203018 | Msa0343180:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | chr3_1:1203036-1203055 | Msa0343180:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | chr3_1:1203037-1203056 | Msa0343180:CDS | 30.0% | |
| !! | AATAAGGAGGGTATTAATGA+TGG | + | chr3_1:1203049-1203068 | Msa0343180:CDS | 30.0% |
| TATCAACTTCACTCAATTTG+CGG | - | chr3_1:1203246-1203265 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | chr3_1:1203297-1203316 | Msa0343180:CDS | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | chr3_1:1203298-1203317 | Msa0343180:CDS | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | + | chr3_1:1203378-1203397 | Msa0343180:CDS | 30.0% | |
| GCAAGGGTTAAAATAAAAGA+TGG | + | chr3_1:1203400-1203419 | Msa0343180:CDS | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | chr3_1:1203487-1203506 | Msa0343180:CDS | 30.0% | |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | chr3_1:1203510-1203529 | Msa0343180:CDS | 30.0% |
| ATACTTGTTCTTTCTATAGG+TGG | - | chr3_1:1203593-1203612 | None:intergenic | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | chr3_1:1203592-1203611 | Msa0343180:CDS | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | chr3_1:1203596-1203615 | None:intergenic | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | chr3_1:1203622-1203641 | None:intergenic | 30.0% | |
| !!! | GGGTTATATATGGAGTTTTT+TGG | + | chr3_1:1203683-1203702 | Msa0343180:CDS | 30.0% |
| CAAAATTTATTAAGCCAAGG+AGG | - | chr3_1:1203790-1203809 | None:intergenic | 30.0% | |
| ACTTAATTGAAGCTACTCTT+TGG | - | chr3_1:1204097-1204116 | None:intergenic | 30.0% | |
| ! | ATGTGGTTGATTCATGTAAT+TGG | - | chr3_1:1204293-1204312 | None:intergenic | 30.0% |
| AAGATTCATCATCAGCAATA+GGG | - | chr3_1:1204556-1204575 | None:intergenic | 30.0% | |
| ATATAGTGATACAGATGAGG+TGG | + | chr3_1:1202643-1202662 | Msa0343180:CDS | 35.0% | |
| ! | ACACTGATAGTGATACAGAT+GGG | + | chr3_1:1202690-1202709 | Msa0343180:CDS | 35.0% |
| GTGGAATTTAACCATGGTAA+TGG | + | chr3_1:1202815-1202834 | Msa0343180:CDS | 35.0% | |
| ! | CTACGAGTTTGAAGTAAGAA+AGG | + | chr3_1:1202973-1202992 | Msa0343180:CDS | 35.0% |
| GATGTGAAACGTGATTCTAA+TGG | + | chr3_1:1202998-1203017 | Msa0343180:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | chr3_1:1203033-1203052 | Msa0343180:CDS | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | - | chr3_1:1203214-1203233 | None:intergenic | 35.0% | |
| TCACTCAATTTGCGGTAATT+AGG | - | chr3_1:1203238-1203257 | None:intergenic | 35.0% | |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | chr3_1:1203259-1203278 | Msa0343180:CDS | 35.0% |
| ! | TCATATCTTGGGCTTTTTGA+TGG | + | chr3_1:1203309-1203328 | Msa0343180:CDS | 35.0% |
| ! | CATATCTTGGGCTTTTTGAT+GGG | + | chr3_1:1203310-1203329 | Msa0343180:CDS | 35.0% |
| AGGACTTGGGTTTATCAAAA+AGG | + | chr3_1:1203351-1203370 | Msa0343180:CDS | 35.0% | |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | chr3_1:1203509-1203528 | Msa0343180:CDS | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | chr3_1:1203516-1203535 | None:intergenic | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | chr3_1:1203547-1203566 | Msa0343180:CDS | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | chr3_1:1203616-1203635 | Msa0343180:CDS | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | + | chr3_1:1203631-1203650 | Msa0343180:CDS | 35.0% |
| ATATATGCAGAACACCTCAA+TGG | - | chr3_1:1203716-1203735 | None:intergenic | 35.0% | |
| ATTTATCTCTTTGTGGTCCA+AGG | + | chr3_1:1203749-1203768 | Msa0343180:intron | 35.0% | |
| CGGCAAAATTTATTAAGCCA+AGG | - | chr3_1:1203793-1203812 | None:intergenic | 35.0% | |
| TATAGAAGACGAAATCTGCA+AGG | - | chr3_1:1203840-1203859 | None:intergenic | 35.0% | |
| AAAAAAAAGTCCCCCGAATT+CGG | + | chr3_1:1204264-1204283 | Msa0343180:intron | 35.0% | |
| ATGTAATTGGTTGCCGAATT+CGG | - | chr3_1:1204280-1204299 | None:intergenic | 35.0% | |
| TTACATGAATCAACCACATC+AGG | + | chr3_1:1204294-1204313 | Msa0343180:intron | 35.0% | |
| !! | TTGCTGTAGAGTAACTTGTT+TGG | - | chr3_1:1204355-1204374 | None:intergenic | 35.0% |
| GAAGATTCATCATCAGCAAT+AGG | - | chr3_1:1204557-1204576 | None:intergenic | 35.0% | |
| ATATAGTGATACAGATGAGG+TGG | + | chr3_1:1202643-1202662 | Msa0343180:CDS | 35.0% | |
| ! | ACACTGATAGTGATACAGAT+GGG | + | chr3_1:1202690-1202709 | Msa0343180:CDS | 35.0% |
| GTGGAATTTAACCATGGTAA+TGG | + | chr3_1:1202815-1202834 | Msa0343180:CDS | 35.0% | |
| ! | CTACGAGTTTGAAGTAAGAA+AGG | + | chr3_1:1202973-1202992 | Msa0343180:CDS | 35.0% |
| GATGTGAAACGTGATTCTAA+TGG | + | chr3_1:1202998-1203017 | Msa0343180:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | chr3_1:1203033-1203052 | Msa0343180:CDS | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | - | chr3_1:1203214-1203233 | None:intergenic | 35.0% | |
| TCACTCAATTTGCGGTAATT+AGG | - | chr3_1:1203238-1203257 | None:intergenic | 35.0% | |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | chr3_1:1203259-1203278 | Msa0343180:CDS | 35.0% |
| ! | TCATATCTTGGGCTTTTTGA+TGG | + | chr3_1:1203309-1203328 | Msa0343180:CDS | 35.0% |
| ! | CATATCTTGGGCTTTTTGAT+GGG | + | chr3_1:1203310-1203329 | Msa0343180:CDS | 35.0% |
| AGGACTTGGGTTTATCAAAA+AGG | + | chr3_1:1203351-1203370 | Msa0343180:CDS | 35.0% | |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | chr3_1:1203509-1203528 | Msa0343180:CDS | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | chr3_1:1203516-1203535 | None:intergenic | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | chr3_1:1203547-1203566 | Msa0343180:CDS | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | chr3_1:1203616-1203635 | Msa0343180:CDS | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | + | chr3_1:1203631-1203650 | Msa0343180:CDS | 35.0% |
| ATATATGCAGAACACCTCAA+TGG | - | chr3_1:1203716-1203735 | None:intergenic | 35.0% | |
| ATTTATCTCTTTGTGGTCCA+AGG | + | chr3_1:1203749-1203768 | Msa0343180:intron | 35.0% | |
| CGGCAAAATTTATTAAGCCA+AGG | - | chr3_1:1203793-1203812 | None:intergenic | 35.0% | |
| TATAGAAGACGAAATCTGCA+AGG | - | chr3_1:1203840-1203859 | None:intergenic | 35.0% | |
| AAAAAAAAGTCCCCCGAATT+CGG | + | chr3_1:1204264-1204283 | Msa0343180:intron | 35.0% | |
| ATGTAATTGGTTGCCGAATT+CGG | - | chr3_1:1204280-1204299 | None:intergenic | 35.0% | |
| TTACATGAATCAACCACATC+AGG | + | chr3_1:1204294-1204313 | Msa0343180:intron | 35.0% | |
| !! | TTGCTGTAGAGTAACTTGTT+TGG | - | chr3_1:1204355-1204374 | None:intergenic | 35.0% |
| GAAGATTCATCATCAGCAAT+AGG | - | chr3_1:1204557-1204576 | None:intergenic | 35.0% | |
| ! | GACACTGATAGTGATACAGA+TGG | + | chr3_1:1202689-1202708 | Msa0343180:CDS | 40.0% |
| ! | CACTGATAGTGATACAGATG+GGG | + | chr3_1:1202691-1202710 | Msa0343180:CDS | 40.0% |
| AGCAACGATGTTTGTACTGA+CGG | + | chr3_1:1202779-1202798 | Msa0343180:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | chr3_1:1202829-1202848 | None:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | chr3_1:1202833-1202852 | Msa0343180:CDS | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | chr3_1:1202834-1202853 | Msa0343180:CDS | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | chr3_1:1202851-1202870 | Msa0343180:CDS | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | chr3_1:1202913-1202932 | Msa0343180:CDS | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | - | chr3_1:1203096-1203115 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | chr3_1:1203110-1203129 | None:intergenic | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | chr3_1:1203146-1203165 | Msa0343180:CDS | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | chr3_1:1203190-1203209 | None:intergenic | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | chr3_1:1203191-1203210 | None:intergenic | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | - | chr3_1:1203201-1203220 | None:intergenic | 40.0% | |
| TGCGGTAATTAGGCATCAAA+TGG | - | chr3_1:1203228-1203247 | None:intergenic | 40.0% | |
| !! | GGCTTTTTGATGGGTCAAAA+GGG | + | chr3_1:1203319-1203338 | Msa0343180:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | chr3_1:1203322-1203341 | Msa0343180:CDS | 40.0% |
| TGATAAACCCAAGTCCTTCA+TGG | - | chr3_1:1203348-1203367 | None:intergenic | 40.0% | |
| !! | TGCTACTTTGAGTTACTTCC+AGG | + | chr3_1:1203432-1203451 | Msa0343180:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+GGG | + | chr3_1:1203433-1203452 | Msa0343180:CDS | 40.0% |
| ! | TTTGAGTTACTTCCAGGGTA+AGG | + | chr3_1:1203438-1203457 | Msa0343180:CDS | 40.0% |
| TTTGGGCAGATTCTACTAGT+AGG | + | chr3_1:1203527-1203546 | Msa0343180:CDS | 40.0% | |
| ATATAACCCCTTTACCCCTA+TGG | - | chr3_1:1203672-1203691 | None:intergenic | 40.0% | |
| AGGGGTAAAGGGGTTATATA+TGG | + | chr3_1:1203673-1203692 | Msa0343180:CDS | 40.0% | |
| TGTAATTGGTTGCCGAATTC+GGG | - | chr3_1:1204279-1204298 | None:intergenic | 40.0% | |
| ! | ATCATCAGCAATAGGGCTTT+TGG | - | chr3_1:1204549-1204568 | None:intergenic | 40.0% |
| ! | TGGGTATAACACGACACTTT+TGG | - | chr3_1:1204623-1204642 | None:intergenic | 40.0% |
| ! | GACACTGATAGTGATACAGA+TGG | + | chr3_1:1202689-1202708 | Msa0343180:CDS | 40.0% |
| ! | CACTGATAGTGATACAGATG+GGG | + | chr3_1:1202691-1202710 | Msa0343180:CDS | 40.0% |
| AGCAACGATGTTTGTACTGA+CGG | + | chr3_1:1202779-1202798 | Msa0343180:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | chr3_1:1202829-1202848 | None:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | chr3_1:1202833-1202852 | Msa0343180:CDS | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | chr3_1:1202834-1202853 | Msa0343180:CDS | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | chr3_1:1202851-1202870 | Msa0343180:CDS | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | chr3_1:1202913-1202932 | Msa0343180:CDS | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | - | chr3_1:1203096-1203115 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | chr3_1:1203110-1203129 | None:intergenic | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | chr3_1:1203146-1203165 | Msa0343180:CDS | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | chr3_1:1203190-1203209 | None:intergenic | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | chr3_1:1203191-1203210 | None:intergenic | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | - | chr3_1:1203201-1203220 | None:intergenic | 40.0% | |
| TGCGGTAATTAGGCATCAAA+TGG | - | chr3_1:1203228-1203247 | None:intergenic | 40.0% | |
| !! | GGCTTTTTGATGGGTCAAAA+GGG | + | chr3_1:1203319-1203338 | Msa0343180:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | chr3_1:1203322-1203341 | Msa0343180:CDS | 40.0% |
| TGATAAACCCAAGTCCTTCA+TGG | - | chr3_1:1203348-1203367 | None:intergenic | 40.0% | |
| !! | TGCTACTTTGAGTTACTTCC+AGG | + | chr3_1:1203432-1203451 | Msa0343180:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+GGG | + | chr3_1:1203433-1203452 | Msa0343180:CDS | 40.0% |
| ! | TTTGAGTTACTTCCAGGGTA+AGG | + | chr3_1:1203438-1203457 | Msa0343180:CDS | 40.0% |
| TTTGGGCAGATTCTACTAGT+AGG | + | chr3_1:1203527-1203546 | Msa0343180:CDS | 40.0% | |
| ATATAACCCCTTTACCCCTA+TGG | - | chr3_1:1203672-1203691 | None:intergenic | 40.0% | |
| AGGGGTAAAGGGGTTATATA+TGG | + | chr3_1:1203673-1203692 | Msa0343180:CDS | 40.0% | |
| TGTAATTGGTTGCCGAATTC+GGG | - | chr3_1:1204279-1204298 | None:intergenic | 40.0% | |
| ! | ATCATCAGCAATAGGGCTTT+TGG | - | chr3_1:1204549-1204568 | None:intergenic | 40.0% |
| ! | TGGGTATAACACGACACTTT+TGG | - | chr3_1:1204623-1204642 | None:intergenic | 40.0% |
| ! | TGATAGTGATACAGATGGGG+TGG | + | chr3_1:1202694-1202713 | Msa0343180:CDS | 45.0% |
| GACGGTGTGGAATTTAACCA+TGG | + | chr3_1:1202809-1202828 | Msa0343180:CDS | 45.0% | |
| !! | GGGCTTTTTGATGGGTCAAA+AGG | + | chr3_1:1203318-1203337 | Msa0343180:CDS | 45.0% |
| ATTTCACGGATCATCAGGCA+AGG | + | chr3_1:1203383-1203402 | Msa0343180:CDS | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | chr3_1:1203384-1203403 | Msa0343180:CDS | 45.0% | |
| TATCAGTATCAGCCTTACCC+TGG | - | chr3_1:1203453-1203472 | None:intergenic | 45.0% | |
| AGAAACAACCCCTTGCCATA+GGG | + | chr3_1:1203654-1203673 | Msa0343180:CDS | 45.0% | |
| ATGCAGAACACCTCAATGGT+GGG | - | chr3_1:1203712-1203731 | None:intergenic | 45.0% | |
| TATGCAGAACACCTCAATGG+TGG | - | chr3_1:1203713-1203732 | None:intergenic | 45.0% | |
| TCTCTTTGTGGTCCAAGGTT+TGG | + | chr3_1:1203754-1203773 | Msa0343180:intron | 45.0% | |
| CTCTTTGTGGTCCAAGGTTT+GGG | + | chr3_1:1203755-1203774 | Msa0343180:intron | 45.0% | |
| GGTGAAAGAAACCCAAACCT+TGG | - | chr3_1:1203769-1203788 | None:intergenic | 45.0% | |
| TTGGGTTTCTTTCACCTCCT+TGG | + | chr3_1:1203773-1203792 | Msa0343180:intron | 45.0% | |
| AGAAGACGAAATCTGCAAGG+AGG | - | chr3_1:1203837-1203856 | None:intergenic | 45.0% | |
| TAATTGGTTGCCGAATTCGG+GGG | - | chr3_1:1204277-1204296 | None:intergenic | 45.0% | |
| GTAATTGGTTGCCGAATTCG+GGG | - | chr3_1:1204278-1204297 | None:intergenic | 45.0% | |
| ! | GTTTGCTAAGCTCAGCAAGA+AGG | + | chr3_1:1204492-1204511 | Msa0343180:intron | 45.0% |
| AGGACTGAGTCCAAGATGAT+AGG | + | chr3_1:1204512-1204531 | Msa0343180:CDS | 45.0% | |
| ACTGAGTCCAAGATGATAGG+CGG | + | chr3_1:1204515-1204534 | Msa0343180:CDS | 45.0% | |
| ! | TGATAGTGATACAGATGGGG+TGG | + | chr3_1:1202694-1202713 | Msa0343180:CDS | 45.0% |
| GACGGTGTGGAATTTAACCA+TGG | + | chr3_1:1202809-1202828 | Msa0343180:CDS | 45.0% | |
| !! | GGGCTTTTTGATGGGTCAAA+AGG | + | chr3_1:1203318-1203337 | Msa0343180:CDS | 45.0% |
| ATTTCACGGATCATCAGGCA+AGG | + | chr3_1:1203383-1203402 | Msa0343180:CDS | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | chr3_1:1203384-1203403 | Msa0343180:CDS | 45.0% | |
| TATCAGTATCAGCCTTACCC+TGG | - | chr3_1:1203453-1203472 | None:intergenic | 45.0% | |
| AGAAACAACCCCTTGCCATA+GGG | + | chr3_1:1203654-1203673 | Msa0343180:CDS | 45.0% | |
| ATGCAGAACACCTCAATGGT+GGG | - | chr3_1:1203712-1203731 | None:intergenic | 45.0% | |
| TATGCAGAACACCTCAATGG+TGG | - | chr3_1:1203713-1203732 | None:intergenic | 45.0% | |
| TCTCTTTGTGGTCCAAGGTT+TGG | + | chr3_1:1203754-1203773 | Msa0343180:intron | 45.0% | |
| CTCTTTGTGGTCCAAGGTTT+GGG | + | chr3_1:1203755-1203774 | Msa0343180:intron | 45.0% | |
| GGTGAAAGAAACCCAAACCT+TGG | - | chr3_1:1203769-1203788 | None:intergenic | 45.0% | |
| TTGGGTTTCTTTCACCTCCT+TGG | + | chr3_1:1203773-1203792 | Msa0343180:intron | 45.0% | |
| AGAAGACGAAATCTGCAAGG+AGG | - | chr3_1:1203837-1203856 | None:intergenic | 45.0% | |
| TAATTGGTTGCCGAATTCGG+GGG | - | chr3_1:1204277-1204296 | None:intergenic | 45.0% | |
| GTAATTGGTTGCCGAATTCG+GGG | - | chr3_1:1204278-1204297 | None:intergenic | 45.0% | |
| ! | GTTTGCTAAGCTCAGCAAGA+AGG | + | chr3_1:1204492-1204511 | Msa0343180:intron | 45.0% |
| AGGACTGAGTCCAAGATGAT+AGG | + | chr3_1:1204512-1204531 | Msa0343180:CDS | 45.0% | |
| ACTGAGTCCAAGATGATAGG+CGG | + | chr3_1:1204515-1204534 | Msa0343180:CDS | 45.0% | |
| ! | TGTACTGACGGAGATGCAGA+CGG | + | chr3_1:1202791-1202810 | Msa0343180:CDS | 50.0% |
| GCTAGTGGTCTACATTCGCA+AGG | + | chr3_1:1203274-1203293 | Msa0343180:CDS | 50.0% | |
| !! | AAGGGGTTGTTTCTCCATGG+TGG | - | chr3_1:1203648-1203667 | None:intergenic | 50.0% |
| GAGAAACAACCCCTTGCCAT+AGG | + | chr3_1:1203653-1203672 | Msa0343180:CDS | 50.0% | |
| GAAACAACCCCTTGCCATAG+GGG | + | chr3_1:1203655-1203674 | Msa0343180:CDS | 50.0% | |
| !! | TTTTTGGCGTCCCACCATTG+AGG | + | chr3_1:1203699-1203718 | Msa0343180:CDS | 50.0% |
| GAATCAACCACATCAGGCCT+CGG | + | chr3_1:1204300-1204319 | Msa0343180:intron | 50.0% | |
| TTGCAAGCCGCCTATCATCT+TGG | - | chr3_1:1204525-1204544 | None:intergenic | 50.0% | |
| TGTGCAACCGCTATTGCTGA+TGG | + | chr3_1:1204586-1204605 | Msa0343180:CDS | 50.0% | |
| ! | AGTATGGTAGCGACTAGCAG+TGG | - | chr3_1:1204647-1204666 | None:intergenic | 50.0% |
| ! | TGTACTGACGGAGATGCAGA+CGG | + | chr3_1:1202791-1202810 | Msa0343180:CDS | 50.0% |
| GCTAGTGGTCTACATTCGCA+AGG | + | chr3_1:1203274-1203293 | Msa0343180:CDS | 50.0% | |
| !! | AAGGGGTTGTTTCTCCATGG+TGG | - | chr3_1:1203648-1203667 | None:intergenic | 50.0% |
| GAGAAACAACCCCTTGCCAT+AGG | + | chr3_1:1203653-1203672 | Msa0343180:CDS | 50.0% | |
| GAAACAACCCCTTGCCATAG+GGG | + | chr3_1:1203655-1203674 | Msa0343180:CDS | 50.0% | |
| !! | TTTTTGGCGTCCCACCATTG+AGG | + | chr3_1:1203699-1203718 | Msa0343180:CDS | 50.0% |
| GAATCAACCACATCAGGCCT+CGG | + | chr3_1:1204300-1204319 | Msa0343180:intron | 50.0% | |
| TTGCAAGCCGCCTATCATCT+TGG | - | chr3_1:1204525-1204544 | None:intergenic | 50.0% | |
| TGTGCAACCGCTATTGCTGA+TGG | + | chr3_1:1204586-1204605 | Msa0343180:CDS | 50.0% | |
| ! | AGTATGGTAGCGACTAGCAG+TGG | - | chr3_1:1204647-1204666 | None:intergenic | 50.0% |
| GGTCAAAAGGGTGGCCATGA+AGG | + | chr3_1:1203331-1203350 | Msa0343180:CDS | 55.0% | |
| AAGGGTGGCCATGAAGGACT+TGG | + | chr3_1:1203337-1203356 | Msa0343180:CDS | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | chr3_1:1203338-1203357 | Msa0343180:CDS | 55.0% | |
| !! | GGCAAGGGGTTGTTTCTCCA+TGG | - | chr3_1:1203651-1203670 | None:intergenic | 55.0% |
| ACCCCTTGCCATAGGGGTAA+AGG | + | chr3_1:1203661-1203680 | Msa0343180:CDS | 55.0% | |
| CCCTTTACCCCTATGGCAAG+GGG | - | chr3_1:1203665-1203684 | None:intergenic | 55.0% | |
| CCCCTTGCCATAGGGGTAAA+GGG | + | chr3_1:1203662-1203681 | Msa0343180:CDS | 55.0% | |
| CCCCTTTACCCCTATGGCAA+GGG | - | chr3_1:1203666-1203685 | None:intergenic | 55.0% | |
| CCCTTGCCATAGGGGTAAAG+GGG | + | chr3_1:1203663-1203682 | Msa0343180:CDS | 55.0% | |
| ACCCCTTTACCCCTATGGCA+AGG | - | chr3_1:1203667-1203686 | None:intergenic | 55.0% | |
| TGATAGTCCGAGGCCTGATG+TGG | - | chr3_1:1204310-1204329 | None:intergenic | 55.0% | |
| GCAACCGCTATTGCTGATGG+CGG | + | chr3_1:1204589-1204608 | Msa0343180:CDS | 55.0% | |
| GGTAGCGACTAGCAGTGGTT+GGG | - | chr3_1:1204642-1204661 | None:intergenic | 55.0% | |
| ! | TGGTAGCGACTAGCAGTGGT+TGG | - | chr3_1:1204643-1204662 | None:intergenic | 55.0% |
| GGTCAAAAGGGTGGCCATGA+AGG | + | chr3_1:1203331-1203350 | Msa0343180:CDS | 55.0% | |
| AAGGGTGGCCATGAAGGACT+TGG | + | chr3_1:1203337-1203356 | Msa0343180:CDS | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | chr3_1:1203338-1203357 | Msa0343180:CDS | 55.0% | |
| !! | GGCAAGGGGTTGTTTCTCCA+TGG | - | chr3_1:1203651-1203670 | None:intergenic | 55.0% |
| ACCCCTTGCCATAGGGGTAA+AGG | + | chr3_1:1203661-1203680 | Msa0343180:CDS | 55.0% | |
| CCCTTTACCCCTATGGCAAG+GGG | - | chr3_1:1203665-1203684 | None:intergenic | 55.0% | |
| CCCCTTGCCATAGGGGTAAA+GGG | + | chr3_1:1203662-1203681 | Msa0343180:CDS | 55.0% | |
| CCCCTTTACCCCTATGGCAA+GGG | - | chr3_1:1203666-1203685 | None:intergenic | 55.0% | |
| CCCTTGCCATAGGGGTAAAG+GGG | + | chr3_1:1203663-1203682 | Msa0343180:CDS | 55.0% | |
| ACCCCTTTACCCCTATGGCA+AGG | - | chr3_1:1203667-1203686 | None:intergenic | 55.0% | |
| TGATAGTCCGAGGCCTGATG+TGG | - | chr3_1:1204310-1204329 | None:intergenic | 55.0% | |
| GCAACCGCTATTGCTGATGG+CGG | + | chr3_1:1204589-1204608 | Msa0343180:CDS | 55.0% | |
| GGTAGCGACTAGCAGTGGTT+GGG | - | chr3_1:1204642-1204661 | None:intergenic | 55.0% | |
| ! | TGGTAGCGACTAGCAGTGGT+TGG | - | chr3_1:1204643-1204662 | None:intergenic | 55.0% |
| TGACGGAGATGCAGACGGTG+TGG | + | chr3_1:1202796-1202815 | Msa0343180:CDS | 60.0% | |
| GCCTCGGACTATCAGAGTGC+AGG | + | chr3_1:1204316-1204335 | Msa0343180:CDS | 60.0% | |
| GCCTGCACTCTGATAGTCCG+AGG | - | chr3_1:1204320-1204339 | None:intergenic | 60.0% | |
| CGAGCCGCCATCAGCAATAG+CGG | - | chr3_1:1204596-1204615 | None:intergenic | 60.0% | |
| !! | TATTGCTGATGGCGGCTCGC+TGG | + | chr3_1:1204597-1204616 | Msa0343180:CDS | 60.0% |
| TGACGGAGATGCAGACGGTG+TGG | + | chr3_1:1202796-1202815 | Msa0343180:CDS | 60.0% | |
| GCCTCGGACTATCAGAGTGC+AGG | + | chr3_1:1204316-1204335 | Msa0343180:CDS | 60.0% | |
| GCCTGCACTCTGATAGTCCG+AGG | - | chr3_1:1204320-1204339 | None:intergenic | 60.0% | |
| CGAGCCGCCATCAGCAATAG+CGG | - | chr3_1:1204596-1204615 | None:intergenic | 60.0% | |
| !! | TATTGCTGATGGCGGCTCGC+TGG | + | chr3_1:1204597-1204616 | Msa0343180:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 1202605 | 1204673 | 1202605 | ID=Msa0343180;Name=Msa0343180 |
| chr3_1 | mRNA | 1202605 | 1204673 | 1202605 | ID=Msa0343180-mRNA-1;Parent=Msa0343180;Name=Msa0343180-mRNA-1;_AED=0.11;_eAED=0.13;_QI=0|0|0|0.33|1|1|3|0|448 |
| chr3_1 | exon | 1202605 | 1203720 | 1202605 | ID=Msa0343180-mRNA-1:exon:428;Parent=Msa0343180-mRNA-1 |
| chr3_1 | exon | 1204316 | 1204379 | 1204316 | ID=Msa0343180-mRNA-1:exon:429;Parent=Msa0343180-mRNA-1 |
| chr3_1 | exon | 1204507 | 1204673 | 1204507 | ID=Msa0343180-mRNA-1:exon:430;Parent=Msa0343180-mRNA-1 |
| chr3_1 | CDS | 1202605 | 1203720 | 1202605 | ID=Msa0343180-mRNA-1:cds;Parent=Msa0343180-mRNA-1 |
| chr3_1 | CDS | 1204316 | 1204379 | 1204316 | ID=Msa0343180-mRNA-1:cds;Parent=Msa0343180-mRNA-1 |
| chr3_1 | CDS | 1204507 | 1204673 | 1204507 | ID=Msa0343180-mRNA-1:cds;Parent=Msa0343180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
