AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0345770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0345770 MtrunA17_Chr3g0090311 99.454 183 1 0 1 183 1 183 7.94e-138 382
Msa0345770 MtrunA17_Chr7g0275421 34.400 125 81 1 27 151 12 135 1.23e-21 86.3
Msa0345770 MtrunA17_Chr7g0252251 31.373 153 96 4 23 169 65 214 3.86e-14 67.8
Msa0345770 MtrunA17_Chr3g0098461 37.241 145 71 5 41 183 37 163 4.59e-14 66.6
Msa0345770 MtrunA17_Chr3g0088851 43.000 100 48 2 2 101 6 96 2.39e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0345770 AT5G13780.1 87.640 178 21 1 1 178 1 177 1.57e-106 303
Msa0345770 AT1G03150.1 37.086 151 94 1 1 151 1 150 8.37e-31 110
Msa0345770 AT2G38130.2 34.921 126 79 3 23 148 38 160 1.95e-14 68.6
Msa0345770 AT2G38130.1 34.921 126 79 3 23 148 38 160 1.95e-14 68.6

Find 70 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTGGATTTGAAGAATT+AGG 0.210822 3_1:+5337475 None:intergenic
AAGAATTAGGGTTAGGGTTT+TGG 0.227708 3_1:+5337488 None:intergenic
ATCTCTACCATATCCTTTCA+TGG 0.314795 3_1:-5337358 Msa0345770:CDS
TGGTTTGAGGATTTGGGTGG+GGG 0.322198 3_1:+5337508 None:intergenic
GGATTTGAAGAATTAGGGTT+AGG 0.370709 3_1:+5337481 None:intergenic
AACAAAGACACTTAAGAAAC+TGG 0.371891 3_1:+5332282 None:intergenic
TTGAGGACTCATCGGAAGTT+GGG 0.373691 3_1:-5337221 Msa0345770:CDS
CATGGCGGTGGATGTTGTTC+TGG 0.380099 3_1:-5332372 Msa0345770:CDS
GTTGTGGATTTGAAGAATTA+GGG 0.382882 3_1:+5337476 None:intergenic
TTGGTTTGAGGATTTGGGTG+GGG 0.383982 3_1:+5337507 None:intergenic
GGTGAAGAGAGAATTTGTTT+TGG 0.396773 3_1:+5337539 None:intergenic
CTCACCATCGGCATAATACT+TGG 0.397635 3_1:+5332470 None:intergenic
GCTGCGGCCATGAAAGGATA+TGG 0.408084 3_1:+5337351 None:intergenic
CCCTGTCTGACACAGGTGTT+TGG 0.408450 3_1:-5332588 Msa0345770:intron
CATGTCATGATGCTTGATTA+TGG 0.413261 3_1:-5332080 Msa0345770:three_prime_UTR
TTGTTAATTCAGAGAGAAAG+AGG 0.413840 3_1:-5332009 Msa0345770:three_prime_UTR
GGTAGAGATAATACTTCATC+TGG 0.416566 3_1:+5337372 None:intergenic
GATTACAACGGGCGTATTGT+TGG 0.428125 3_1:-5337311 Msa0345770:CDS
AATTTGTACACAGAGACATT+GGG 0.436747 3_1:-5332516 Msa0345770:CDS
AGTACGTGTCGCTGCACGTC+AGG 0.443312 3_1:-5332560 Msa0345770:CDS
ACGTAACAGAGAGCATTATT+CGG 0.452550 3_1:+5332201 None:intergenic
ATTACAACGGGCGTATTGTT+GGG 0.454521 3_1:-5337310 Msa0345770:CDS
TACTTCATCTGGTAATTCTC+TGG 0.457563 3_1:+5337383 None:intergenic
TTTGGTTTGAGGATTTGGGT+GGG 0.462483 3_1:+5337506 None:intergenic
GATTTGAAGAATTAGGGTTA+GGG 0.469618 3_1:+5337482 None:intergenic
TGCGCAGAATGCTATGGAAC+AGG 0.469671 3_1:-5337174 Msa0345770:intron
TTACTTCTCTTGCTGTGTTG+AGG 0.475222 3_1:-5337238 Msa0345770:CDS
AGGGGATTGCACACACAATC+AGG 0.476914 3_1:+5332326 None:intergenic
TAAATGAATGCACCTGGTTG+TGG 0.495495 3_1:-5332108 Msa0345770:three_prime_UTR
CTAGTTTGATATTGACAAGA+TGG 0.498485 3_1:-5332234 Msa0345770:three_prime_UTR
TGGGTATGTTCTTGCGAAGA+TGG 0.502832 3_1:-5337291 Msa0345770:CDS
TAATTTGTACACAGAGACAT+TGG 0.506484 3_1:-5332517 Msa0345770:CDS
GTTGAGGACTCATCGGAAGT+TGG 0.509733 3_1:-5337222 Msa0345770:CDS
CACCACCACCACCATGGCGG+TGG 0.513426 3_1:-5332384 Msa0345770:CDS
TGGTGATGATGATGCTGTGG+TGG 0.516982 3_1:+5332402 None:intergenic
AACATCCACCGCCATGGTGG+TGG 0.527634 3_1:+5332379 None:intergenic
ACGTTGCTGAAGATTACAAC+GGG 0.530845 3_1:-5337322 Msa0345770:CDS
ATCCACCGCCATGGTGGTGG+TGG 0.531254 3_1:+5332382 None:intergenic
GGTGATGATGATGCTGTGGT+GGG 0.531337 3_1:+5332403 None:intergenic
GACTGCTGCGCAGAATGCTA+TGG 0.532516 3_1:-5337180 Msa0345770:CDS
AAAGAAGCTGCGGCCATGAA+AGG 0.548179 3_1:+5337345 None:intergenic
CGCGAGTAGGTCGTTTACGT+TGG 0.550072 3_1:+5337433 None:intergenic
TTGCTGTGTTGAGGACTCAT+CGG 0.568495 3_1:-5337229 Msa0345770:CDS
GCGTATGCACACCATTGTTG+TGG 0.579484 3_1:+5337460 None:intergenic
GTCGTAAGCATCCTCACCAT+CGG 0.583433 3_1:+5332458 None:intergenic
TGAGGACTCATCGGAAGTTG+GGG 0.585463 3_1:-5337220 Msa0345770:CDS
TCAGGCTTTAGCATTCCCCT+TGG 0.589203 3_1:+5332344 None:intergenic
TGACATGATGAACCACAACC+AGG 0.590159 3_1:+5332096 None:intergenic
TGTACAAATTAAAAGCTGCT+CGG 0.593994 3_1:+5332529 None:intergenic
TGGTGGTGATGATGATGCTG+TGG 0.594446 3_1:+5332399 None:intergenic
GACATGAGAAAGCAACTCAA+GGG 0.594794 3_1:-5332438 Msa0345770:CDS
CGACATGAGAAAGCAACTCA+AGG 0.607954 3_1:-5332439 Msa0345770:CDS
ATTTGTACACAGAGACATTG+GGG 0.621381 3_1:-5332515 Msa0345770:CDS
GGGGTACAAGATTCATGATG+TGG 0.625757 3_1:-5332496 Msa0345770:CDS
ATTCTTCAAATCCACAACAA+TGG 0.626938 3_1:-5337471 Msa0345770:exon
TGTTGTTCTGGTGAGACCAA+GGG 0.630820 3_1:-5332360 Msa0345770:CDS
GAAGAGACGAATGAGTGTCA+TGG 0.632268 3_1:-5337266 Msa0345770:CDS
ATGTTGTTCTGGTGAGACCA+AGG 0.634317 3_1:-5332361 Msa0345770:CDS
CAGAACAACATCCACCGCCA+TGG 0.635963 3_1:+5332373 None:intergenic
CAAGTATTATGCCGATGGTG+AGG 0.639380 3_1:-5332469 Msa0345770:CDS
GTACAAGATTCATGATGTGG+AGG 0.644670 3_1:-5332493 Msa0345770:CDS
GTTGTTCTGGTGAGACCAAG+GGG 0.645711 3_1:-5332359 Msa0345770:CDS
TGCACGCTTGCATCGCGAGT+AGG 0.650168 3_1:+5337420 None:intergenic
CATCATCACCACCACCACCA+TGG 0.659708 3_1:-5332390 Msa0345770:CDS
TACGTTGCTGAAGATTACAA+CGG 0.660668 3_1:-5337323 Msa0345770:CDS
ACATGAGAAAGCAACTCAAG+GGG 0.666287 3_1:-5332437 Msa0345770:CDS
TCAGCAACGTAAAGAAGCTG+CGG 0.667671 3_1:+5337335 None:intergenic
AACAACATCCACCGCCATGG+TGG 0.672650 3_1:+5332376 None:intergenic
GAGGCCAAGTATTATGCCGA+TGG 0.673456 3_1:-5332474 Msa0345770:CDS
CATCACCACCACCACCATGG+CGG 0.743898 3_1:-5332387 Msa0345770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATTTTAAAAAAAT+TGG - chr3_1:5334404-5334423 Msa0345770:intron 0.0%
!!! TATTTTATTTTAAAAAAATT+GGG - chr3_1:5334405-5334424 Msa0345770:intron 0.0%
!!! ATATTACTTGTATTTTTTTT+AGG + chr3_1:5332545-5332564 None:intergenic 10.0%
!! ATTTATTCAATGAATCTAAA+AGG + chr3_1:5333098-5333117 None:intergenic 15.0%
!! ACTTATAGCTTATAATAAAA+TGG + chr3_1:5333260-5333279 None:intergenic 15.0%
!! ATAAGCATTTATATGATAAA+CGG + chr3_1:5334337-5334356 None:intergenic 15.0%
!! TTCTGTTATATTTAATGTAA+TGG - chr3_1:5335511-5335530 Msa0345770:intron 15.0%
!! TTAACTTAAACTTACTAAAT+AGG - chr3_1:5336333-5336352 Msa0345770:intron 15.0%
!!! TTTTTTCAATCAAGATTACA+AGG - chr3_1:5332582-5332601 Msa0345770:intron 20.0%
!!! TTTTTCAATCAAGATTACAA+GGG - chr3_1:5332583-5332602 Msa0345770:intron 20.0%
!! AGATTACACATTTCATAAAA+TGG + chr3_1:5332811-5332830 None:intergenic 20.0%
!!! AGTGATTTTTTGTTTATAAG+TGG + chr3_1:5333138-5333157 None:intergenic 20.0%
!! TTGCTTATAATAGTGATAAA+AGG - chr3_1:5333198-5333217 Msa0345770:intron 20.0%
!! TGCTTATAATAGTGATAAAA+GGG - chr3_1:5333199-5333218 Msa0345770:intron 20.0%
!! AAATAAGTTAAAACAGCTTA+TGG - chr3_1:5333567-5333586 Msa0345770:intron 20.0%
!!! ATATCATTTTTAGAGTTTGT+TGG - chr3_1:5333962-5333981 Msa0345770:intron 20.0%
!!! TATCATTTTTAGAGTTTGTT+GGG - chr3_1:5333963-5333982 Msa0345770:intron 20.0%
!! ATAAAAACAGTTTATACTTG+AGG + chr3_1:5334555-5334574 None:intergenic 20.0%
!!! ACTGTTTTTATAATAAACGA+TGG - chr3_1:5334564-5334583 Msa0345770:intron 20.0%
!! GTTAGGAATTTATTATATCA+CGG - chr3_1:5336148-5336167 Msa0345770:intron 20.0%
!! ACTTGAATTAACTATAAACA+TGG + chr3_1:5336213-5336232 None:intergenic 20.0%
!!! ACTTACTAAATAGGTTTTTA+TGG - chr3_1:5336342-5336361 Msa0345770:intron 20.0%
!!! CTTACTAAATAGGTTTTTAT+GGG - chr3_1:5336343-5336362 Msa0345770:intron 20.0%
!! GAATACTCATAATCTTTATA+AGG - chr3_1:5336455-5336474 Msa0345770:intron 20.0%
! GTTTGATTATGTTATGAGTT+TGG - chr3_1:5332366-5332385 Msa0345770:CDS 25.0%
! AGCAGTTAATTGATTGAATT+TGG - chr3_1:5332471-5332490 Msa0345770:CDS 25.0%
!!! AATCATTTTTACAGTGAGTT+TGG - chr3_1:5332964-5332983 Msa0345770:intron 25.0%
!!! ATTTTTTGTTTATAAGTGGC+CGG + chr3_1:5333134-5333153 None:intergenic 25.0%
!!! TAAGCAAACAATCACTTTTT+AGG + chr3_1:5333185-5333204 None:intergenic 25.0%
! TATGAAATTACGCTAAAAAC+TGG - chr3_1:5333294-5333313 Msa0345770:intron 25.0%
! GGATTAAGTATAACATAACT+AGG + chr3_1:5333667-5333686 None:intergenic 25.0%
! AATACAAAATCTCCCTTATT+TGG - chr3_1:5333865-5333884 Msa0345770:intron 25.0%
!! ATACAAAATCTCCCTTATTT+GGG - chr3_1:5333866-5333885 Msa0345770:intron 25.0%
! TACTCAAAAATTGTATTGGA+GGG - chr3_1:5333891-5333910 Msa0345770:intron 25.0%
! TTTATTACTATGACTCTGTT+TGG - chr3_1:5333988-5334007 Msa0345770:intron 25.0%
! TTATTACTATGACTCTGTTT+GGG - chr3_1:5333989-5334008 Msa0345770:intron 25.0%
!!! AATCATTTTTAGAGTGAGTT+GGG - chr3_1:5334260-5334279 Msa0345770:intron 25.0%
!!! TTTTAAAAAAATTGGGGAAG+CGG - chr3_1:5334412-5334431 Msa0345770:intron 25.0%
!!! AGTTAGGATCATTTTTAAGT+TGG - chr3_1:5334779-5334798 Msa0345770:intron 25.0%
! CTGTTTCAAATAAACTATAC+TGG - chr3_1:5334906-5334925 Msa0345770:intron 25.0%
! TACTAACATAAACACATGTA+AGG + chr3_1:5335012-5335031 None:intergenic 25.0%
!! GTTAACGTTATAAGTTTGTT+TGG - chr3_1:5335134-5335153 Msa0345770:intron 25.0%
!!! TTAGAATCATTTTTGGAGTT+GGG - chr3_1:5335217-5335236 Msa0345770:intron 25.0%
!!! CAGTTTGACTTTTTTACTAT+AGG + chr3_1:5335332-5335351 None:intergenic 25.0%
! TCAAATAAGTCAATTGAAAC+CGG - chr3_1:5335469-5335488 Msa0345770:intron 25.0%
! GAACAAAGTTGTAACATAAT+TGG + chr3_1:5335569-5335588 None:intergenic 25.0%
! AGTTCAAAAGTAAGATAATC+CGG + chr3_1:5335929-5335948 None:intergenic 25.0%
!! TTTTTGTGTTTTCAAACTCT+GGG + chr3_1:5336042-5336061 None:intergenic 25.0%
!! ATTTTTGTGTTTTCAAACTC+TGG + chr3_1:5336043-5336062 None:intergenic 25.0%
!! AACTGCAATTTTATATCTTC+TGG - chr3_1:5336066-5336085 Msa0345770:intron 25.0%
!! ACTGCAATTTTATATCTTCT+GGG - chr3_1:5336067-5336086 Msa0345770:intron 25.0%
!! CTTTTACAAGCTAAACTAAT+TGG + chr3_1:5336286-5336305 None:intergenic 25.0%
!! ATAGGTTTTTATGGGTTTAT+TGG - chr3_1:5336351-5336370 Msa0345770:intron 25.0%
! TATGGGTTTATTGGTATTTA+TGG - chr3_1:5336360-5336379 Msa0345770:intron 25.0%
! TGTTTCAACAAAATAATCGT+AGG + chr3_1:5336503-5336522 None:intergenic 25.0%
!!! ATTTTTTAAATGAATGCACC+TGG - chr3_1:5337395-5337414 Msa0345770:CDS 25.0%
!!! ATATCTTTGCTTTTATGTCA+TGG - chr3_1:5337462-5337481 Msa0345770:exon 25.0%
!!! TATCTTTGCTTTTATGTCAT+GGG - chr3_1:5337463-5337482 Msa0345770:exon 25.0%
GATTTGAAGAATTAGGGTTA+GGG + chr3_1:5332030-5332049 None:intergenic 30.0%
GTTGTGGATTTGAAGAATTA+GGG + chr3_1:5332036-5332055 None:intergenic 30.0%
TGTTGTGGATTTGAAGAATT+AGG + chr3_1:5332037-5332056 None:intergenic 30.0%
ATTCTTCAAATCCACAACAA+TGG - chr3_1:5332038-5332057 Msa0345770:three_prime_UTR 30.0%
TTACTTAGTTATCTCGAGTT+CGG - chr3_1:5332394-5332413 Msa0345770:CDS 30.0%
CAAGATTACAAGGGTAAAAT+TGG - chr3_1:5332592-5332611 Msa0345770:intron 30.0%
TTAACTAGAAAAGATCCGTT+TGG + chr3_1:5332696-5332715 None:intergenic 30.0%
!! AAAGTGTCTTGCCTTTTTAT+CGG - chr3_1:5332743-5332762 Msa0345770:intron 30.0%
TGTCTATCATTCCGATAAAA+AGG + chr3_1:5332757-5332776 None:intergenic 30.0%
TGCTTATAAAAGTGACTGAA+GGG + chr3_1:5333067-5333086 None:intergenic 30.0%
TTGCTTATAAAAGTGACTGA+AGG + chr3_1:5333068-5333087 None:intergenic 30.0%
ATAAATGATGTATCTCTCTC+CGG - chr3_1:5333112-5333131 Msa0345770:intron 30.0%
TCAATTAAGTCAATCCAAAC+AGG - chr3_1:5333346-5333365 Msa0345770:intron 30.0%
!!! TTGTTTTTATTAGCTGTCCT+TGG - chr3_1:5333534-5333553 Msa0345770:intron 30.0%
!! TGTTTTTATTAGCTGTCCTT+GGG - chr3_1:5333535-5333554 Msa0345770:intron 30.0%
! CTACTAAGATAAGCACTTTT+GGG + chr3_1:5333625-5333644 None:intergenic 30.0%
! TCTACTAAGATAAGCACTTT+TGG + chr3_1:5333626-5333645 None:intergenic 30.0%
GAACTAACTACTAACAAACT+TGG + chr3_1:5333728-5333747 None:intergenic 30.0%
! TTGTTAGTAGTTAGTTCTTC+AGG - chr3_1:5333731-5333750 Msa0345770:intron 30.0%
! TGTTAGTAGTTAGTTCTTCA+GGG - chr3_1:5333732-5333751 Msa0345770:intron 30.0%
TGGAGTAAGTGAAAGAATTT+AGG - chr3_1:5333800-5333819 Msa0345770:intron 30.0%
GGAGTAAGTGAAAGAATTTA+GGG - chr3_1:5333801-5333820 Msa0345770:intron 30.0%
! TACAAAATCTCCCTTATTTG+GGG - chr3_1:5333867-5333886 Msa0345770:intron 30.0%
GTACTCAAAAATTGTATTGG+AGG - chr3_1:5333890-5333909 Msa0345770:intron 30.0%
ACTCAAAAATTGTATTGGAG+GGG - chr3_1:5333892-5333911 Msa0345770:intron 30.0%
GACTGCTTATGCTATTAAAA+AGG - chr3_1:5334026-5334045 Msa0345770:intron 30.0%
!! GCTTATTTTCATAAACACTC+CGG + chr3_1:5334115-5334134 None:intergenic 30.0%
AATAAGCCGAAAACAACTTA+TGG - chr3_1:5334128-5334147 Msa0345770:intron 30.0%
!! ACATGTCCATAAGTTGTTTT+CGG + chr3_1:5334137-5334156 None:intergenic 30.0%
GTCAATTTGTACGAACTTAT+AGG - chr3_1:5334225-5334244 Msa0345770:intron 30.0%
!!! GAATCATTTTTAGAGTGAGT+TGG - chr3_1:5334259-5334278 Msa0345770:intron 30.0%
TGTTAATTAAAGTGCACTAG+TGG - chr3_1:5334442-5334461 Msa0345770:intron 30.0%
GCATCAAGTGATAAATTAGT+GGG + chr3_1:5334677-5334696 None:intergenic 30.0%
AAAGTTGTAACTAAATACCC+TGG + chr3_1:5334747-5334766 None:intergenic 30.0%
! CTTTAGTGTTTGAGATAGTT+AGG - chr3_1:5334763-5334782 Msa0345770:intron 30.0%
ATCTGTAACAGCTATTTACA+AGG + chr3_1:5335065-5335084 None:intergenic 30.0%
! AACGTTAACAAACTTGTTCA+TGG + chr3_1:5335123-5335142 None:intergenic 30.0%
! GAGACACTTAGAATCATTTT+TGG - chr3_1:5335210-5335229 Msa0345770:intron 30.0%
!!! CTTAGAATCATTTTTGGAGT+TGG - chr3_1:5335216-5335235 Msa0345770:intron 30.0%
AAGCTTTCTTAGATAGCTTA+TGG - chr3_1:5335368-5335387 Msa0345770:intron 30.0%
GATAAGCTGAAAACAACTTA+TGG - chr3_1:5335392-5335411 Msa0345770:intron 30.0%
CAAATTAGTCAGTTACATCA+CGG - chr3_1:5335588-5335607 Msa0345770:intron 30.0%
AAAGAATCCTCAAAGTTAGT+TGG - chr3_1:5335670-5335689 Msa0345770:intron 30.0%
AAGAATCCTCAAAGTTAGTT+GGG - chr3_1:5335671-5335690 Msa0345770:intron 30.0%
!! TTTGGAAACAACTTGTTAAC+CGG - chr3_1:5335790-5335809 Msa0345770:intron 30.0%
! GTTTTCTTACCTCGTATATA+TGG + chr3_1:5335830-5335849 None:intergenic 30.0%
! TTTTGTGTTTTCAAACTCTG+GGG + chr3_1:5336041-5336060 None:intergenic 30.0%
! GATTCTGTTGAAAGTTTGTT+AGG - chr3_1:5336131-5336150 Msa0345770:intron 30.0%
! TGGTGTTAACTAACTATAAC+AGG + chr3_1:5336193-5336212 None:intergenic 30.0%
! TTGGTTCCAATTTTGTTAGT+TGG - chr3_1:5336258-5336277 Msa0345770:intron 30.0%
! TGGTTCCAATTTTGTTAGTT+GGG - chr3_1:5336259-5336278 Msa0345770:intron 30.0%
TATAAACAGTTGAGCTACAA+TGG - chr3_1:5336403-5336422 Msa0345770:intron 30.0%
TTCAATTAGCTGTGATACTT+AGG - chr3_1:5336539-5336558 Msa0345770:intron 30.0%
AGAGCAGATAAGTTGTAAAA+AGG + chr3_1:5336580-5336599 None:intergenic 30.0%
ATCTGCTCTTAATCTTATCA+TGG - chr3_1:5336591-5336610 Msa0345770:intron 30.0%
TGTACAAATTAAAAGCTGCT+CGG + chr3_1:5336983-5337002 None:intergenic 30.0%
! TAATTTGTACACAGAGACAT+TGG - chr3_1:5336992-5337011 Msa0345770:intron 30.0%
AATTTGTACACAGAGACATT+GGG - chr3_1:5336993-5337012 Msa0345770:intron 30.0%
AGAAACTGGCAAAAAAAATG+TGG + chr3_1:5337216-5337235 None:intergenic 30.0%
AACAAAGACACTTAAGAAAC+TGG + chr3_1:5337230-5337249 None:intergenic 30.0%
CTAGTTTGATATTGACAAGA+TGG - chr3_1:5337275-5337294 Msa0345770:CDS 30.0%
!! ATCTTTGCTTTTATGTCATG+GGG - chr3_1:5337464-5337483 Msa0345770:exon 30.0%
TTGTTAATTCAGAGAGAAAG+AGG - chr3_1:5337500-5337519 Msa0345770:five_prime_UTR 30.0%
!! GGTGAAGAGAGAATTTGTTT+TGG + chr3_1:5331973-5331992 None:intergenic 35.0%
! AAGAATTAGGGTTAGGGTTT+TGG + chr3_1:5332024-5332043 None:intergenic 35.0%
GGATTTGAAGAATTAGGGTT+AGG + chr3_1:5332031-5332050 None:intergenic 35.0%
TACTTCATCTGGTAATTCTC+TGG + chr3_1:5332129-5332148 None:intergenic 35.0%
GGTAGAGATAATACTTCATC+TGG + chr3_1:5332140-5332159 None:intergenic 35.0%
ATCTCTACCATATCCTTTCA+TGG - chr3_1:5332151-5332170 Msa0345770:three_prime_UTR 35.0%
TACGTTGCTGAAGATTACAA+CGG - chr3_1:5332186-5332205 Msa0345770:three_prime_UTR 35.0%
ATAAGCCCATGAGAAATTGA+CGG - chr3_1:5332667-5332686 Msa0345770:intron 35.0%
AGAAATTGACGGTTACCAAA+CGG - chr3_1:5332678-5332697 Msa0345770:intron 35.0%
TTTATCGGAATGATAGACAC+AGG - chr3_1:5332758-5332777 Msa0345770:intron 35.0%
CGTAATTTCATAAGATCTGC+AGG + chr3_1:5333286-5333305 None:intergenic 35.0%
TAGTTCTTCAGGGTATGTTT+AGG - chr3_1:5333742-5333761 Msa0345770:intron 35.0%
GTATGTTTAGGAGTTTGGAA+TGG - chr3_1:5333754-5333773 Msa0345770:intron 35.0%
! AGTGAAAGAATTTAGGGCTT+TGG - chr3_1:5333807-5333826 Msa0345770:intron 35.0%
! GTGAAAGAATTTAGGGCTTT+GGG - chr3_1:5333808-5333827 Msa0345770:intron 35.0%
! ACAAAATCTCCCTTATTTGG+GGG - chr3_1:5333868-5333887 Msa0345770:intron 35.0%
!! TTTTGAGTACCCCCAAATAA+GGG + chr3_1:5333880-5333899 None:intergenic 35.0%
!!! TTTTTGAGTACCCCCAAATA+AGG + chr3_1:5333881-5333900 None:intergenic 35.0%
! GGGGTACTCAAAAATTGTAT+TGG - chr3_1:5333887-5333906 Msa0345770:intron 35.0%
CTCAAAAATTGTATTGGAGG+GGG - chr3_1:5333893-5333912 Msa0345770:intron 35.0%
ATTGTTTCAGTAAGCCATAC+CGG - chr3_1:5334093-5334112 Msa0345770:intron 35.0%
! TTTTCATAAACACTCCGGTA+TGG + chr3_1:5334110-5334129 None:intergenic 35.0%
CTTATTACCTTGATGCTACA+AGG - chr3_1:5334497-5334516 Msa0345770:intron 35.0%
! AGATTAGTTGGACCTATTAG+TGG - chr3_1:5334644-5334663 Msa0345770:intron 35.0%
GGCATCAAGTGATAAATTAG+TGG + chr3_1:5334678-5334697 None:intergenic 35.0%
!! ATGCCTATTTTTCTCATGAG+CGG - chr3_1:5334693-5334712 Msa0345770:intron 35.0%
GCATAAGCACTTAATTAAGC+TGG + chr3_1:5334839-5334858 None:intergenic 35.0%
CCATTACAGATAATTAGTGC+CGG + chr3_1:5335491-5335510 None:intergenic 35.0%
! AAACCTATTCCATAGCGTTT+TGG + chr3_1:5335543-5335562 None:intergenic 35.0%
TTGCGACTATAACTCTGTTA+CGG - chr3_1:5335697-5335716 Msa0345770:intron 35.0%
! ACAAGTTGTTTCCAAACTCT+GGG + chr3_1:5335786-5335805 None:intergenic 35.0%
! AACAAGTTGTTTCCAAACTC+TGG + chr3_1:5335787-5335806 None:intergenic 35.0%
!! TTGGAAACAACTTGTTAACC+GGG - chr3_1:5335791-5335810 Msa0345770:intron 35.0%
CGTATATATGGAGAAACAGT+TGG + chr3_1:5335818-5335837 None:intergenic 35.0%
! ACTGTTTCTCCATATATACG+AGG - chr3_1:5335818-5335837 Msa0345770:intron 35.0%
!!! TTCTGGGTTTTCTAGTCTTA+AGG - chr3_1:5336083-5336102 Msa0345770:intron 35.0%
ATCTGTAAGACTGTAGCTAT+TGG - chr3_1:5336239-5336258 Msa0345770:intron 35.0%
TTGGACCCAACTAACAAAAT+TGG + chr3_1:5336267-5336286 None:intergenic 35.0%
!! GCAGAGTTGATTTTCACTTA+CGG - chr3_1:5336675-5336694 Msa0345770:intron 35.0%
!! CAGAGTTGATTTTCACTTAC+GGG - chr3_1:5336676-5336695 Msa0345770:intron 35.0%
AGTCTAACTGAATCGAAATG+TGG + chr3_1:5336758-5336777 None:intergenic 35.0%
ATTTGTACACAGAGACATTG+GGG - chr3_1:5336994-5337013 Msa0345770:intron 35.0%
ACTGGCAAAAAAAATGTGGT+GGG + chr3_1:5337212-5337231 None:intergenic 35.0%
AACTGGCAAAAAAAATGTGG+TGG + chr3_1:5337213-5337232 None:intergenic 35.0%
!! ACGTAACAGAGAGCATTATT+CGG + chr3_1:5337311-5337330 None:intergenic 35.0%
CATGTCATGATGCTTGATTA+TGG - chr3_1:5337429-5337448 Msa0345770:CDS 35.0%
!! TTTGGTTTGAGGATTTGGGT+GGG + chr3_1:5332006-5332025 None:intergenic 40.0%
!!! TTTTGGTTTGAGGATTTGGG+TGG + chr3_1:5332007-5332026 None:intergenic 40.0%
!!! GGGTTTTGGTTTGAGGATTT+GGG + chr3_1:5332010-5332029 None:intergenic 40.0%
!!! AGGGTTTTGGTTTGAGGATT+TGG + chr3_1:5332011-5332030 None:intergenic 40.0%
ACGTTGCTGAAGATTACAAC+GGG - chr3_1:5332187-5332206 Msa0345770:three_prime_UTR 40.0%
ATTACAACGGGCGTATTGTT+GGG - chr3_1:5332199-5332218 Msa0345770:three_prime_UTR 40.0%
! TTACTTCTCTTGCTGTGTTG+AGG - chr3_1:5332271-5332290 Msa0345770:three_prime_UTR 40.0%
AGAATGCTATGGAACAGGTT+TGG - chr3_1:5332340-5332359 Msa0345770:exon 40.0%
GGTAACCGTCAATTTCTCAT+GGG + chr3_1:5332675-5332694 None:intergenic 40.0%
TGGTAACCGTCAATTTCTCA+TGG + chr3_1:5332676-5332695 None:intergenic 40.0%
TGCTCAGAATGCTATGGAAA+AGG - chr3_1:5332865-5332884 Msa0345770:intron 40.0%
! GAGTTTGGAGTTTGTGACTA+AGG - chr3_1:5332979-5332998 Msa0345770:intron 40.0%
TTTGTGACTAAGGCTCTGTT+TGG - chr3_1:5332989-5333008 Msa0345770:intron 40.0%
ACAGATAGTTACGACCTGTT+TGG + chr3_1:5333363-5333382 None:intergenic 40.0%
CAGGTCGTAACTATCTGTTA+CGG - chr3_1:5333365-5333384 Msa0345770:intron 40.0%
CTTATTTCCATAAGCTCCCA+AGG + chr3_1:5333554-5333573 None:intergenic 40.0%
TTGGAAAGCAACCTATTCCA+TGG + chr3_1:5333709-5333728 None:intergenic 40.0%
TCAGGGTATGTTTAGGAGTT+TGG - chr3_1:5333749-5333768 Msa0345770:intron 40.0%
! TGTTTAGGAGTTTGGAATGG+AGG - chr3_1:5333757-5333776 Msa0345770:intron 40.0%
! GTTTAGGAGTTTGGAATGGA+GGG - chr3_1:5333758-5333777 Msa0345770:intron 40.0%
!!! GAGGGTTTTGGAGAAAAGTA+TGG - chr3_1:5333780-5333799 Msa0345770:intron 40.0%
!! AAAGAATTTAGGGCTTTGGG+TGG - chr3_1:5333811-5333830 Msa0345770:intron 40.0%
! ATTGTATTGGAGGGGGATTT+TGG - chr3_1:5333900-5333919 Msa0345770:intron 40.0%
! TCTGACTATGACGTGTTGTT+TGG - chr3_1:5334287-5334306 Msa0345770:intron 40.0%
CACTAGTGGCCAATTTAGAA+CGG - chr3_1:5334456-5334475 Msa0345770:intron 40.0%
AGCTTAACCTTGTAGCATCA+AGG + chr3_1:5334507-5334526 None:intergenic 40.0%
CTGTAAATGGAGGTAGATTC+TGG + chr3_1:5334600-5334619 None:intergenic 40.0%
CTTTCTCTCTGGACTGTAAA+TGG + chr3_1:5334613-5334632 None:intergenic 40.0%
TGTCCGCTCATGAGAAAAAT+AGG + chr3_1:5334699-5334718 None:intergenic 40.0%
ATGAGCGGACAGTAGATAAA+TGG - chr3_1:5334708-5334727 Msa0345770:intron 40.0%
GTAACTAAATACCCTGGATC+TGG + chr3_1:5334741-5334760 None:intergenic 40.0%
! TTACTGACTATGACCCTGTT+TGG - chr3_1:5334809-5334828 Msa0345770:intron 40.0%
! TACTGACTATGACCCTGTTT+GGG - chr3_1:5334810-5334829 Msa0345770:intron 40.0%
TTAAGCTGGTTACCCAAACA+GGG + chr3_1:5334825-5334844 None:intergenic 40.0%
ATTAAGCTGGTTACCCAAAC+AGG + chr3_1:5334826-5334845 None:intergenic 40.0%
!!! AGGCTTTTTCAGAGAGCATT+TGG + chr3_1:5334992-5335011 None:intergenic 40.0%
CTTTATGCTGAAGCTCATGA+CGG - chr3_1:5335085-5335104 Msa0345770:intron 40.0%
! CTTGTTCATGGCATTTTGAG+CGG + chr3_1:5335111-5335130 None:intergenic 40.0%
CTTGTGATATAGGCGATGTT+TGG - chr3_1:5335242-5335261 Msa0345770:intron 40.0%
ATGAGCACTTGTATGACTAG+GGG + chr3_1:5335297-5335316 None:intergenic 40.0%
CATGAGCACTTGTATGACTA+GGG + chr3_1:5335298-5335317 None:intergenic 40.0%
ACATGAGCACTTGTATGACT+AGG + chr3_1:5335299-5335318 None:intergenic 40.0%
AGACTGTTTGAGAGAGCTTA+TGG + chr3_1:5335436-5335455 None:intergenic 40.0%
CCGGCACTAATTATCTGTAA+TGG - chr3_1:5335488-5335507 Msa0345770:intron 40.0%
CAAGTACCCAACTAACTTTG+AGG + chr3_1:5335680-5335699 None:intergenic 40.0%
TCTAAAGAGATCCCAGAGTT+TGG - chr3_1:5335772-5335791 Msa0345770:intron 40.0%
! TCTGGTGTTAAAAGTGTGTG+TGG + chr3_1:5335863-5335882 None:intergenic 40.0%
AGAGAATGCCATACTGAATG+AGG - chr3_1:5335955-5335974 Msa0345770:intron 40.0%
TTTAGATGTAGCTTCCATGG+TGG + chr3_1:5336014-5336033 None:intergenic 40.0%
CACTTTAGATGTAGCTTCCA+TGG + chr3_1:5336017-5336036 None:intergenic 40.0%
! TAAGGTACCAGAGTCTTATG+AGG - chr3_1:5336101-5336120 Msa0345770:intron 40.0%
! AAGGTACCAGAGTCTTATGA+GGG - chr3_1:5336102-5336121 Msa0345770:intron 40.0%
TGTGATACTTAGGATGCGTT+TGG - chr3_1:5336549-5336568 Msa0345770:intron 40.0%
TCCATCTAACTCGTCCATAA+TGG + chr3_1:5336632-5336651 None:intergenic 40.0%
! TGATTTTCACTTACGGGAGA+AGG - chr3_1:5336682-5336701 Msa0345770:intron 40.0%
AAGTGCGTGTCTTCTTGTAA+TGG - chr3_1:5336865-5336884 Msa0345770:intron 40.0%
AGTGCGTGTCTTCTTGTAAT+GGG - chr3_1:5336866-5336885 Msa0345770:intron 40.0%
GTACAAGATTCATGATGTGG+AGG - chr3_1:5337016-5337035 Msa0345770:intron 40.0%
GACATGAGAAAGCAACTCAA+GGG - chr3_1:5337071-5337090 Msa0345770:intron 40.0%
ACATGAGAAAGCAACTCAAG+GGG - chr3_1:5337072-5337091 Msa0345770:intron 40.0%
! AAAAAAATGTGGTGGGGGTA+GGG + chr3_1:5337205-5337224 None:intergenic 40.0%
! AAAAAAAATGTGGTGGGGGT+AGG + chr3_1:5337206-5337225 None:intergenic 40.0%
TGGCAAAAAAAATGTGGTGG+GGG + chr3_1:5337210-5337229 None:intergenic 40.0%
CTGGCAAAAAAAATGTGGTG+GGG + chr3_1:5337211-5337230 None:intergenic 40.0%
TAAATGAATGCACCTGGTTG+TGG - chr3_1:5337401-5337420 Msa0345770:CDS 40.0%
! TTGGTTTGAGGATTTGGGTG+GGG + chr3_1:5332005-5332024 None:intergenic 45.0%
!!! AGGGTTAGGGTTTTGGTTTG+AGG + chr3_1:5332017-5332036 None:intergenic 45.0%
TCAGCAACGTAAAGAAGCTG+CGG + chr3_1:5332177-5332196 None:intergenic 45.0%
GATTACAACGGGCGTATTGT+TGG - chr3_1:5332198-5332217 Msa0345770:three_prime_UTR 45.0%
TGGGTATGTTCTTGCGAAGA+TGG - chr3_1:5332218-5332237 Msa0345770:three_prime_UTR 45.0%
GAAGAGACGAATGAGTGTCA+TGG - chr3_1:5332243-5332262 Msa0345770:three_prime_UTR 45.0%
TTGCTGTGTTGAGGACTCAT+CGG - chr3_1:5332280-5332299 Msa0345770:three_prime_UTR 45.0%
TTGAGGACTCATCGGAAGTT+GGG - chr3_1:5332288-5332307 Msa0345770:three_prime_UTR 45.0%
ATCGGAATGATAGACACAGG+TGG - chr3_1:5332761-5332780 Msa0345770:intron 45.0%
AGACACAGGTGGAAGATTGT+AGG - chr3_1:5332772-5332791 Msa0345770:intron 45.0%
TTCTGAGCAGCAGTCATAAG+TGG + chr3_1:5332854-5332873 None:intergenic 45.0%
GGACTGTTTGAGAGAGCTTA+TGG + chr3_1:5333604-5333623 None:intergenic 45.0%
GGCGATTTGAGCATCAGAAT+GGG + chr3_1:5333688-5333707 None:intergenic 45.0%
TGGCGATTTGAGCATCAGAA+TGG + chr3_1:5333689-5333708 None:intergenic 45.0%
TTCTGATGCTCAAATCGCCA+TGG - chr3_1:5333689-5333708 Msa0345770:intron 45.0%
TGCTCAAATCGCCATGGAAT+AGG - chr3_1:5333695-5333714 Msa0345770:intron 45.0%
!! ATTTAGGGCTTTGGGTGGTA+AGG - chr3_1:5333816-5333835 Msa0345770:intron 45.0%
!! TTTAGGGCTTTGGGTGGTAA+GGG - chr3_1:5333817-5333836 Msa0345770:intron 45.0%
TCTCTCTGGACTGTAAATGG+AGG + chr3_1:5334610-5334629 None:intergenic 45.0%
GACACAGGTGGAAGATTAGT+TGG - chr3_1:5334632-5334651 Msa0345770:intron 45.0%
GTGGGACTCATTCCACTAAT+AGG + chr3_1:5334659-5334678 None:intergenic 45.0%
AATGGAGCAATTCCAGATCC+AGG - chr3_1:5334726-5334745 Msa0345770:intron 45.0%
ATGGAGCAATTCCAGATCCA+GGG - chr3_1:5334727-5334746 Msa0345770:intron 45.0%
GAGTTGGGAGCTTGTGATAT+AGG - chr3_1:5335232-5335251 Msa0345770:intron 45.0%
TGAGCACTTGTATGACTAGG+GGG + chr3_1:5335296-5335315 None:intergenic 45.0%
! CCTATTCCATAGCGTTTTGG+CGG + chr3_1:5335540-5335559 None:intergenic 45.0%
TATGGAGAAACAGTTGGACC+CGG + chr3_1:5335812-5335831 None:intergenic 45.0%
! GGTGTTAAAAGTGTGTGTGG+CGG + chr3_1:5335860-5335879 None:intergenic 45.0%
! ACTGGTTTACAAGTTGGGTC+TGG + chr3_1:5335881-5335900 None:intergenic 45.0%
! CGCGAACTGGTTTACAAGTT+GGG + chr3_1:5335886-5335905 None:intergenic 45.0%
! TCGCGAACTGGTTTACAAGT+TGG + chr3_1:5335887-5335906 None:intergenic 45.0%
!!! CCGGTTGTTTTTCACGTATC+CGG + chr3_1:5335910-5335929 None:intergenic 45.0%
CCGGATACGTGAAAAACAAC+CGG - chr3_1:5335907-5335926 Msa0345770:intron 45.0%
TGCCATACTGAATGAGGCAA+AGG - chr3_1:5335961-5335980 Msa0345770:intron 45.0%
AGCCTTTGCCTCATTCAGTA+TGG + chr3_1:5335966-5335985 None:intergenic 45.0%
! TTGTGAGGGTGTGAAATGCA+CGG + chr3_1:5335989-5336008 None:intergenic 45.0%
CTTCCATGGTGGTATTGTGA+GGG + chr3_1:5336003-5336022 None:intergenic 45.0%
! ACCAGAGTCTTATGAGGGTA+AGG - chr3_1:5336107-5336126 Msa0345770:intron 45.0%
ACCTTACCCTCATAAGACTC+TGG + chr3_1:5336111-5336130 None:intergenic 45.0%
TATCATGGCATGAACACCTG+TGG - chr3_1:5336606-5336625 Msa0345770:intron 45.0%
ATGAACACCTGTGGCCATTA+TGG - chr3_1:5336615-5336634 Msa0345770:intron 45.0%
GCCATTATGGACGAGTTAGA+TGG - chr3_1:5336628-5336647 Msa0345770:intron 45.0%
GTGCGTGTCTTCTTGTAATG+GGG - chr3_1:5336867-5336886 Msa0345770:intron 45.0%
! TGTCTTCTTGTAATGGGGCT+TGG - chr3_1:5336872-5336891 Msa0345770:intron 45.0%
GGGGTACAAGATTCATGATG+TGG - chr3_1:5337013-5337032 Msa0345770:intron 45.0%
CTCACCATCGGCATAATACT+TGG + chr3_1:5337042-5337061 None:intergenic 45.0%
CAAGTATTATGCCGATGGTG+AGG - chr3_1:5337040-5337059 Msa0345770:intron 45.0%
CGACATGAGAAAGCAACTCA+AGG - chr3_1:5337070-5337089 Msa0345770:intron 45.0%
ATGTTGTTCTGGTGAGACCA+AGG - chr3_1:5337148-5337167 Msa0345770:intron 45.0%
TGTTGTTCTGGTGAGACCAA+GGG - chr3_1:5337149-5337168 Msa0345770:intron 45.0%
! AAAAAATGTGGTGGGGGTAG+GGG + chr3_1:5337204-5337223 None:intergenic 45.0%
TGACATGATGAACCACAACC+AGG + chr3_1:5337416-5337435 None:intergenic 45.0%
!!! ATTTTATTTTAAAAAAATTG+GGG - chr3_1:5334406-5334425 Msa0345770:intron 5.0%
ATTTGGGTGGGGGAATCGAA+TGG + chr3_1:5331994-5332013 None:intergenic 50.0%
TGGTTTGAGGATTTGGGTGG+GGG + chr3_1:5332004-5332023 None:intergenic 50.0%
GCGTATGCACACCATTGTTG+TGG + chr3_1:5332052-5332071 None:intergenic 50.0%
AAAGAAGCTGCGGCCATGAA+AGG + chr3_1:5332167-5332186 None:intergenic 50.0%
GTTGAGGACTCATCGGAAGT+TGG - chr3_1:5332287-5332306 Msa0345770:three_prime_UTR 50.0%
TGAGGACTCATCGGAAGTTG+GGG - chr3_1:5332289-5332308 Msa0345770:three_prime_UTR 50.0%
TGCGCAGAATGCTATGGAAC+AGG - chr3_1:5332335-5332354 Msa0345770:exon 50.0%
TCGAGTTCGGATTTGCATCG+CGG - chr3_1:5332407-5332426 Msa0345770:CDS 50.0%
GACTGCTGCTCAGAATGCTA+TGG - chr3_1:5332859-5332878 Msa0345770:intron 50.0%
TAGCTGTCCTTGGGAGCTTA+TGG - chr3_1:5333544-5333563 Msa0345770:intron 50.0%
! TAGGAGTTTGGAATGGAGGG+AGG - chr3_1:5333761-5333780 Msa0345770:intron 50.0%
! AGGAGTTTGGAATGGAGGGA+GGG - chr3_1:5333762-5333781 Msa0345770:intron 50.0%
! TTGGAATGGAGGGAGGGTTT+TGG - chr3_1:5333768-5333787 Msa0345770:intron 50.0%
! TGGCCAATTTAGAACGGCAC+TGG - chr3_1:5334462-5334481 Msa0345770:intron 50.0%
! CCTCCAGTGCCGTTCTAAAT+TGG + chr3_1:5334468-5334487 None:intergenic 50.0%
! CCAATTTAGAACGGCACTGG+AGG - chr3_1:5334465-5334484 Msa0345770:intron 50.0%
CAGTCCAGAGAGAAAGACAC+AGG - chr3_1:5334617-5334636 Msa0345770:intron 50.0%
TCCAGAGAGAAAGACACAGG+TGG - chr3_1:5334620-5334639 Msa0345770:intron 50.0%
TCCACCTGTGTCTTTCTCTC+TGG + chr3_1:5334624-5334643 None:intergenic 50.0%
CCGCCAAAACGCTATGGAAT+AGG - chr3_1:5335537-5335556 Msa0345770:intron 50.0%
! AAAGTGTGTGTGGCGGAACA+GGG + chr3_1:5335853-5335872 None:intergenic 50.0%
! AAAAGTGTGTGTGGCGGAAC+AGG + chr3_1:5335854-5335873 None:intergenic 50.0%
CTTGTAAACCAGTTCGCGAC+CGG - chr3_1:5335888-5335907 Msa0345770:intron 50.0%
ACACCCTCACAATACCACCA+TGG - chr3_1:5335997-5336016 Msa0345770:intron 50.0%
GCTTCCATGGTGGTATTGTG+AGG + chr3_1:5336004-5336023 None:intergenic 50.0%
AACTCGTCCATAATGGCCAC+AGG + chr3_1:5336625-5336644 None:intergenic 50.0%
ACCTGTGTCAGACAGGGTAA+CGG + chr3_1:5336918-5336937 None:intergenic 50.0%
CCAAACACCTGTGTCAGACA+GGG + chr3_1:5336924-5336943 None:intergenic 50.0%
ACCAAACACCTGTGTCAGAC+AGG + chr3_1:5336925-5336944 None:intergenic 50.0%
GAGGCCAAGTATTATGCCGA+TGG - chr3_1:5337035-5337054 Msa0345770:intron 50.0%
GTCGTAAGCATCCTCACCAT+CGG + chr3_1:5337054-5337073 None:intergenic 50.0%
! GGTGATGATGATGCTGTGGT+GGG + chr3_1:5337109-5337128 None:intergenic 50.0%
! TGGTGATGATGATGCTGTGG+TGG + chr3_1:5337110-5337129 None:intergenic 50.0%
! TGGTGGTGATGATGATGCTG+TGG + chr3_1:5337113-5337132 None:intergenic 50.0%
GTTGTTCTGGTGAGACCAAG+GGG - chr3_1:5337150-5337169 Msa0345770:intron 50.0%
! TCAGGCTTTAGCATTCCCCT+TGG + chr3_1:5337168-5337187 None:intergenic 50.0%
AGGGGATTGCACACACAATC+AGG + chr3_1:5337186-5337205 None:intergenic 50.0%
CGCGAGTAGGTCGTTTACGT+TGG + chr3_1:5332079-5332098 None:intergenic 55.0%
GCTGCGGCCATGAAAGGATA+TGG + chr3_1:5332161-5332180 None:intergenic 55.0%
GACTGCTGCGCAGAATGCTA+TGG - chr3_1:5332329-5332348 Msa0345770:exon 55.0%
CTTTGGGTGGTAAGGGCTCT+GGG - chr3_1:5333824-5333843 Msa0345770:intron 55.0%
TTTGGGTGGTAAGGGCTCTG+GGG - chr3_1:5333825-5333844 Msa0345770:intron 55.0%
TGGTTGCCGCCAAAACGCTA+TGG - chr3_1:5335531-5335550 Msa0345770:intron 55.0%
! AAGTGTGTGTGGCGGAACAG+GGG + chr3_1:5335852-5335871 None:intergenic 55.0%
ACCGTTACCCTGTCTGACAC+AGG - chr3_1:5336914-5336933 Msa0345770:intron 55.0%
CCCTGTCTGACACAGGTGTT+TGG - chr3_1:5336921-5336940 Msa0345770:intron 55.0%
CATCATCACCACCACCACCA+TGG - chr3_1:5337119-5337138 Msa0345770:intron 55.0%
AACAACATCCACCGCCATGG+TGG + chr3_1:5337136-5337155 None:intergenic 55.0%
CAGAACAACATCCACCGCCA+TGG + chr3_1:5337139-5337158 None:intergenic 55.0%
CATGGCGGTGGATGTTGTTC+TGG - chr3_1:5337137-5337156 Msa0345770:intron 55.0%
TGCACGCTTGCATCGCGAGT+AGG + chr3_1:5332092-5332111 None:intergenic 60.0%
! GCTTTGGGTGGTAAGGGCTC+TGG - chr3_1:5333823-5333842 Msa0345770:intron 60.0%
TCACGTATCCGGTCGCGAAC+TGG + chr3_1:5335899-5335918 None:intergenic 60.0%
CATCACCACCACCACCATGG+CGG - chr3_1:5337122-5337141 Msa0345770:intron 60.0%
AACATCCACCGCCATGGTGG+TGG + chr3_1:5337133-5337152 None:intergenic 60.0%
!! ATCCACCGCCATGGTGGTGG+TGG + chr3_1:5337130-5337149 None:intergenic 65.0%
CACCACCACCACCATGGCGG+TGG - chr3_1:5337125-5337144 Msa0345770:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 5331961 5337570 5331961 ID=Msa0345770;Name=Msa0345770
chr3_1 mRNA 5331961 5337570 5331961 ID=Msa0345770-mRNA-1;Parent=Msa0345770;Name=Msa0345770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=96|1|1|1|1|1|2|383|183
chr3_1 exon 5331961 5332595 5331961 ID=Msa0345770-mRNA-1:exon:1595;Parent=Msa0345770-mRNA-1
chr3_1 exon 5337175 5337570 5337175 ID=Msa0345770-mRNA-1:exon:1594;Parent=Msa0345770-mRNA-1
chr3_1 five_prime_UTR 5337475 5337570 5337475 ID=Msa0345770-mRNA-1:five_prime_utr;Parent=Msa0345770-mRNA-1
chr3_1 CDS 5337175 5337474 5337175 ID=Msa0345770-mRNA-1:cds;Parent=Msa0345770-mRNA-1
chr3_1 CDS 5332344 5332595 5332344 ID=Msa0345770-mRNA-1:cds;Parent=Msa0345770-mRNA-1
chr3_1 three_prime_UTR 5331961 5332343 5331961 ID=Msa0345770-mRNA-1:three_prime_utr;Parent=Msa0345770-mRNA-1
Gene Sequence

>Msa0345770

ATGGTGTGCATACGCAAAGCCAACGTAAACGACCTACTCGCGATGCAAGCGTGCAATCTCTTCTGCTTACCAGAGAATTACCAGATGAAGTATTATCTCTACCATATCCTTTCATGGCCGCAGCTTCTTTACGTTGCTGAAGATTACAACGGGCGTATTGTTGGGTATGTTCTTGCGAAGATGGAAGAAGAGACGAATGAGTGTCATGGTCATATTACTTCTCTTGCTGTGTTGAGGACTCATCGGAAGTTGGGGATTGCTACTAAGCTTATGACTGCTGCGCAGAATGCTATGGAACAGGTGTTTGGTGCTGAGTACGTGTCGCTGCACGTCAGGAAGAGCAACCGAGCAGCTTTTAATTTGTACACAGAGACATTGGGGTACAAGATTCATGATGTGGAGGCCAAGTATTATGCCGATGGTGAGGATGCTTACGACATGAGAAAGCAACTCAAGGGGAAGACGATACACCCACCACAGCATCATCATCACCACCACCACCATGGCGGTGGATGTTGTTCTGGTGAGACCAAGGGGAATGCTAAAGCCTGA
Protein sequence

>Msa0345770

MVCIRKANVNDLLAMQACNLFCLPENYQMKYYLYHILSWPQLLYVAEDYNGRIVGYVLAKMEEETNECHGHITSLAVLRTHRKLGIATKLMTAAQNAMEQVFGAEYVSLHVRKSNRAAFNLYTETLGYKIHDVEAKYYADGEDAYDMRKQLKGKTIHPPQHHHHHHHHGGGCCSGETKGNAKA*