AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0346420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346420 MtrunA17_Chr3g0078041 92.810 153 11 0 1 153 77 229 3.53e-104 297
Msa0346420 MtrunA17_Chr7g0233911 49.655 145 72 1 1 145 61 204 6.40e-46 149
Msa0346420 MtrunA17_Chr2g0329421 38.158 152 87 3 1 148 54 202 1.67e-25 96.7
Msa0346420 MtrunA17_Chr4g0033611 39.726 146 78 3 1 140 103 244 4.37e-25 96.7
Msa0346420 MtrunA17_Chr2g0329361 35.404 161 82 5 1 144 88 243 2.39e-22 89.4
Msa0346420 MtrunA17_Chr2g0287061 33.019 106 57 1 1 106 56 147 6.91e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346420 AT2G43280.2 74.000 150 39 0 1 150 14 163 4.33e-83 242
Msa0346420 AT2G43280.1 74.000 150 39 0 1 150 49 198 5.75e-83 243
Msa0346420 AT3G07500.1 47.020 151 73 3 1 145 60 209 8.17e-35 121
Msa0346420 AT4G12850.1 40.541 148 76 2 1 144 38 177 3.48e-32 113
Msa0346420 AT3G59470.3 44.000 150 73 4 1 144 97 241 2.14e-29 108
Msa0346420 AT3G59470.1 44.000 150 73 4 1 144 97 241 2.14e-29 108
Msa0346420 AT3G59470.2 44.000 150 73 4 1 144 109 253 3.46e-29 107
Msa0346420 AT4G12850.2 50.617 81 26 3 1 76 38 109 3.35e-17 73.6
Msa0346420 AT4G12850.4 48.750 80 29 2 1 76 38 109 8.28e-17 72.8

Find 138 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAATTTCAAATGTTATT+TGG 0.078075 3_1:-6906213 Msa0346420:three_prime_UTR
GTTAAAGTATTTATCAAATT+AGG 0.122825 3_1:-6910175 Msa0346420:five_prime_UTR
AGTGACGGGGCGCAAGTTTC+TGG 0.159707 3_1:-6908362 Msa0346420:five_prime_UTR
AGTTTCTGGGGATGGTAATT+TGG 0.161172 3_1:-6908348 Msa0346420:five_prime_UTR
CTAACGCGGCAGGCTGATTT+TGG 0.184680 3_1:-6910248 Msa0346420:five_prime_UTR
CATAATTTCAAATGTTATTT+GGG 0.254582 3_1:-6906212 Msa0346420:three_prime_UTR
CACAGTAATATATTGATTAT+AGG 0.279919 3_1:+6905989 None:intergenic
CATCCTTTGAACAGAACTTT+AGG 0.286081 3_1:+6905899 None:intergenic
TTAAAGTATTTATCAAATTA+GGG 0.291110 3_1:-6910174 Msa0346420:five_prime_UTR
CATTAAATGCCTAAAATTAC+TGG 0.294760 3_1:-6906152 Msa0346420:three_prime_UTR
AGTCATCACCAAAGGATAAA+AGG 0.302280 3_1:+6905874 None:intergenic
AGATCGGCAATGAGTTATTC+TGG 0.302667 3_1:-6907302 Msa0346420:five_prime_UTR
AGTATGATCAGTCTGGAAAA+TGG 0.314309 3_1:-6906989 Msa0346420:CDS
AAATTATGTAAGACCGACTA+TGG 0.315213 3_1:+6906227 None:intergenic
CCATGTTGCATAACAAAGTA+TGG 0.327959 3_1:+6908405 None:intergenic
TTTCTGTATCACAGAAAATC+TGG 0.331432 3_1:+6905759 None:intergenic
GTTTCTGGGGATGGTAATTT+GGG 0.336117 3_1:-6908347 Msa0346420:intron
AGGATTCTCGCCCGCAGGTT+TGG 0.338766 3_1:-6907116 Msa0346420:CDS
CTCCGCGCCGCGATAGCGCC+GGG 0.342358 3_1:-6910222 Msa0346420:five_prime_UTR
CCGCAGGTTTGGATGTAATA+AGG 0.351849 3_1:-6907105 Msa0346420:CDS
TCAAGTGTCATCTTATCAAT+TGG 0.352747 3_1:+6906332 None:intergenic
CGCCGCGATAGCGCCGGGAG+CGG 0.357422 3_1:-6910217 Msa0346420:five_prime_UTR
GCTCCGCGCCGCGATAGCGC+CGG 0.369703 3_1:-6910223 Msa0346420:five_prime_UTR
TGAGAAGGATAAGAAAATTC+AGG 0.371151 3_1:-6906681 Msa0346420:CDS
GAAGGAGAAGGAAGAGGAAA+AGG 0.372699 3_1:+6910503 None:intergenic
AGTTATTCTGGGAGAGAGTT+GGG 0.374469 3_1:-6907290 Msa0346420:five_prime_UTR
GTGACGGGGCGCAAGTTTCT+GGG 0.375563 3_1:-6908361 Msa0346420:five_prime_UTR
CTGGCCCTTTGTTTACGAAC+TGG 0.384788 3_1:+6907047 None:intergenic
ATTATGGATTTACCACTGTT+TGG 0.387495 3_1:+6906904 None:intergenic
TAAATACTCACACATATTGC+AGG 0.401425 3_1:+6906481 None:intergenic
TTGTCAAACGCGGCCGCTCC+CGG 0.401595 3_1:+6910204 None:intergenic
TTTAATGCAAGACAAAATCT+TGG 0.403945 3_1:-6906060 Msa0346420:three_prime_UTR
ACAAATTCCATGCCTTCATA+TGG 0.409270 3_1:+6907236 None:intergenic
TGATCATGACCGTGTTGTTA+AGG 0.412987 3_1:-6907261 Msa0346420:five_prime_UTR
CAGCACAAGGGAAGGTTGTA+AGG 0.418636 3_1:-6907027 Msa0346420:CDS
AGGAAAAGGAAGAGGAAGGA+AGG 0.429477 3_1:+6910517 None:intergenic
CTGGTGCAAAAGCTCTTCTA+TGG 0.431453 3_1:+6906511 None:intergenic
CATCATACAGAATTATGAAA+TGG 0.441815 3_1:+6906179 None:intergenic
CTTACAACCTTCCCTTGTGC+TGG 0.442748 3_1:+6907028 None:intergenic
GAAGGAAGAGGAAAAGGAAG+AGG 0.447884 3_1:+6910509 None:intergenic
GTATGATCAGTCTGGAAAAT+GGG 0.452188 3_1:-6906988 Msa0346420:CDS
GAAGAGGAAGGAGAAGGAAG+AGG 0.452552 3_1:+6910497 None:intergenic
TTGCAAAAGATTTGAAATTG+AGG 0.453516 3_1:-6910074 Msa0346420:intron
GCCGATCTACACCCATCATT+CGG 0.454532 3_1:+6907317 None:intergenic
CAGATCTAACCGGATCTAAC+CGG 0.458845 3_1:-6910466 Msa0346420:five_prime_UTR
GAGCGGAGCGGGTCGATAGC+GGG 0.461378 3_1:+6910326 None:intergenic
GGTCATTGTGTCAGCATACA+AGG 0.462427 3_1:-6907080 Msa0346420:CDS
TCTGTAGAGGAGGAAGAGGA+AGG 0.465585 3_1:+6910485 None:intergenic
CAAGTGTCATCTTATCAATT+GGG 0.470689 3_1:+6906333 None:intergenic
AGTTTGTGAAAGATCATAAT+CGG 0.471376 3_1:-6906956 Msa0346420:CDS
AAAATGAGAGGTCACTTTGA+AGG 0.472140 3_1:-6906258 Msa0346420:three_prime_UTR
GGAAGGAAGGAGAAGGAAAG+AGG 0.472738 3_1:+6910530 None:intergenic
CATATCAAGTATGATCAGTC+TGG 0.475718 3_1:-6906996 Msa0346420:CDS
ATGGAATCTAGATTAGTTGA+TGG 0.477267 3_1:-6908386 Msa0346420:five_prime_UTR
GGAAGGAGAAGGAAAGAGGA+AGG 0.480169 3_1:+6910534 None:intergenic
GGCGCTATCGCGGCGCGGAG+CGG 0.481361 3_1:+6910225 None:intergenic
GTCAGCATACAAGGGAAACT+TGG 0.481454 3_1:-6907071 Msa0346420:CDS
GGATCTGAGCACAAAACAAC+CGG 0.481926 3_1:+6910368 None:intergenic
GGAGCGGAGCGGGTCGATAG+CGG 0.482502 3_1:+6910325 None:intergenic
GGCCGCTCCCGGCGCTATCG+CGG 0.483112 3_1:+6910215 None:intergenic
GAAGAGGAAAAGGAAGAGGA+AGG 0.484246 3_1:+6910513 None:intergenic
CTAGTCTTGTGACATAAAGT+TGG 0.484495 3_1:-6905840 Msa0346420:three_prime_UTR
TGGTTGTTTCCGGTTAGATC+CGG 0.486613 3_1:+6910405 None:intergenic
TGGTTGTTTCCGGTTAGATC+CGG 0.486613 3_1:+6910457 None:intergenic
AGGAACTAACAATAGAGCTT+CGG 0.489799 3_1:-6906661 Msa0346420:CDS
TCCTCCTCTACAGATCTAAC+CGG 0.489976 3_1:-6910476 Msa0346420:five_prime_UTR
CGGTGGCGTTCTAACGCGGC+AGG 0.490492 3_1:-6910258 Msa0346420:five_prime_UTR
GAGTTATTCTGGGAGAGAGT+TGG 0.490905 3_1:-6907291 Msa0346420:five_prime_UTR
TCCTCATTCACGTGAAAGTA+CGG 0.492285 3_1:-6910572 None:intergenic
GTCATCTTATCAATTGGGCT+AGG 0.495796 3_1:+6906338 None:intergenic
TAGATCTGTAGAGGAGGAAG+AGG 0.497896 3_1:+6910481 None:intergenic
TCATGCGTGTGATGTCTTGT+CGG 0.499987 3_1:-6907157 Msa0346420:CDS
CTAGGGTCGGACCGCAATGA+TGG 0.500363 3_1:+6906356 None:intergenic
CATGACAAATCCCACATGTC+AGG 0.501698 3_1:+6907175 None:intergenic
AGGAAGAGGAAGGAAGGAGA+AGG 0.502386 3_1:+6910523 None:intergenic
ACATATTGCAGGGCTACGTC+TGG 0.502924 3_1:+6906492 None:intergenic
CCATACTTTGTTATGCAACA+TGG 0.507703 3_1:-6908405 Msa0346420:five_prime_UTR
GTGACAGGGGAACCGAATGA+TGG 0.522978 3_1:-6907329 Msa0346420:intron
GATCGGCAATGAGTTATTCT+GGG 0.523467 3_1:-6907301 Msa0346420:five_prime_UTR
GGTCCTAAAGTTCTGTTCAA+AGG 0.528523 3_1:-6905902 Msa0346420:three_prime_UTR
TTTGTGAAAAGCGGGTTTCG+CGG 0.529584 3_1:+6910290 None:intergenic
GAGGAGGAAGAGGAAGGAGA+AGG 0.529892 3_1:+6910491 None:intergenic
ATGGAAGGATTCTCGCCCGC+AGG 0.531144 3_1:-6907121 Msa0346420:CDS
AGGAGAAGGAAAGAGGAAGG+AGG 0.532635 3_1:+6910537 None:intergenic
TACGCGGTGGCGTTCTAACG+CGG 0.540337 3_1:-6910262 Msa0346420:five_prime_UTR
CGCTCCGCTCCCCGTAAAAG+CGG 0.541984 3_1:-6910313 Msa0346420:five_prime_UTR
GTAAACAAAGGGCCAGCACA+AGG 0.551726 3_1:-6907040 Msa0346420:CDS
ACCGAATGATGGGTGTAGAT+CGG 0.551733 3_1:-6907318 Msa0346420:five_prime_UTR
TGGTCCAGTTCGTAAACAAA+GGG 0.552529 3_1:-6907051 Msa0346420:CDS
CTCCCGGCGCTATCGCGGCG+CGG 0.554875 3_1:+6910220 None:intergenic
GATTAGTTGATGGAAGTGAC+GGG 0.556222 3_1:-6908376 Msa0346420:five_prime_UTR
TGTAAGACCGACTATGGAGT+TGG 0.568494 3_1:+6906233 None:intergenic
GTAGCGCGTTTGTGAAAAGC+GGG 0.570173 3_1:+6910282 None:intergenic
CTTATTACATCCAAACCTGC+GGG 0.573213 3_1:+6907106 None:intergenic
TGAAATATTTATAAAATGAG+AGG 0.576338 3_1:-6906270 Msa0346420:three_prime_UTR
GTTGTTAAGGAACCATATGA+AGG 0.579939 3_1:-6907248 Msa0346420:five_prime_UTR
AGATTAGTTGATGGAAGTGA+CGG 0.582091 3_1:-6908377 Msa0346420:five_prime_UTR
TTGGTCCAGTTCGTAAACAA+AGG 0.585407 3_1:-6907052 Msa0346420:CDS
TCATCTTATCAATTGGGCTA+GGG 0.585452 3_1:+6906339 None:intergenic
TTCACAAACGCGCTACGCGG+TGG 0.585958 3_1:-6910275 Msa0346420:five_prime_UTR
GGGGCGCAAGTTTCTGGGGA+TGG 0.587261 3_1:-6908356 Msa0346420:five_prime_UTR
GCGTGGTGTGATCACTAACT+TGG 0.589124 3_1:-6905923 Msa0346420:three_prime_UTR
CATAACACGTAAAATCTGCA+TGG 0.589761 3_1:+6905957 None:intergenic
TAAGGAACCATATGAAGGCA+TGG 0.594188 3_1:-6907243 Msa0346420:five_prime_UTR
ACTGTTTGGCGTGCTTCACG+TGG 0.596242 3_1:+6906918 None:intergenic
TCCGGTTAGATCTGTAGAGG+AGG 0.597608 3_1:+6910475 None:intergenic
CAAAGGGCCAGCACAAGGGA+AGG 0.601558 3_1:-6907035 Msa0346420:CDS
TGTCGGCGCTCAGAAAGAGA+TGG 0.607052 3_1:-6907140 Msa0346420:CDS
TGGAAATTTCGCCATCATTG+CGG 0.610428 3_1:-6906367 Msa0346420:three_prime_UTR
TGACAGGGGAACCGAATGAT+GGG 0.614797 3_1:-6907328 Msa0346420:intron
CGTAGCGCGTTTGTGAAAAG+CGG 0.615340 3_1:+6910281 None:intergenic
CTTATCAATTGGGCTAGGGT+CGG 0.618568 3_1:+6906343 None:intergenic
ATAGGTTAAGCATAATAAAG+CGG 0.619540 3_1:+6906007 None:intergenic
GAAGGAACCAACTCCATAGT+CGG 0.620437 3_1:-6906240 Msa0346420:three_prime_UTR
AAATACTCACACATATTGCA+GGG 0.620555 3_1:+6906482 None:intergenic
TGATGAATATGCCTGACATG+TGG 0.623260 3_1:-6907186 Msa0346420:five_prime_UTR
TAAACAAAGGGCCAGCACAA+GGG 0.625275 3_1:-6907039 Msa0346420:CDS
ATTAAATGCCTAAAATTACT+GGG 0.625557 3_1:-6906151 Msa0346420:three_prime_UTR
CAGGTTTGGATGTAATAAGG+AGG 0.625678 3_1:-6907102 Msa0346420:CDS
TGACGGGGCGCAAGTTTCTG+GGG 0.627063 3_1:-6908360 Msa0346420:five_prime_UTR
GATGAATATGCCTGACATGT+GGG 0.627371 3_1:-6907185 Msa0346420:five_prime_UTR
AGATCCGGTGACAAAACGAC+CGG 0.631136 3_1:+6910420 None:intergenic
CCTTATTACATCCAAACCTG+CGG 0.631158 3_1:+6907105 None:intergenic
TGTGCTCAGATCCGGAAAAG+CGG 0.635815 3_1:-6910358 Msa0346420:five_prime_UTR
CATATGGTTCCTTAACAACA+CGG 0.637072 3_1:+6907252 None:intergenic
AGGTTTGGATGTAATAAGGA+GGG 0.648013 3_1:-6907101 Msa0346420:CDS
TAGCAAGTAGTCATCACCAA+AGG 0.653778 3_1:+6905866 None:intergenic
GGCGCTCAGAAAGAGATGGA+AGG 0.658444 3_1:-6907136 Msa0346420:CDS
ACGTACAAAATGTTAGACAA+AGG 0.659717 3_1:+6906115 None:intergenic
GTCATTGTGTCAGCATACAA+GGG 0.663280 3_1:-6907079 Msa0346420:CDS
ACGTGAAGCACGCCAAACAG+TGG 0.666308 3_1:-6906916 Msa0346420:intron
TCACGTGGAGAGACTACTAG+TGG 0.667460 3_1:+6906933 None:intergenic
AGATCCGGTTAGATCTGTAG+AGG 0.673740 3_1:+6910472 None:intergenic
TAACACTCTGTTGTCAAACG+CGG 0.679385 3_1:+6910194 None:intergenic
CACAAGGGAAGGTTGTAAGG+CGG 0.693860 3_1:-6907024 Msa0346420:CDS
ATTAGTTGATGGAAGTGACG+GGG 0.720299 3_1:-6908375 Msa0346420:five_prime_UTR
GGGTCGATAGCGGGTCAAAG+CGG 0.744143 3_1:+6910335 None:intergenic
GTTATGCAGAATGCACAGCG+TGG 0.809154 3_1:-6905940 Msa0346420:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAGTATTTATCAAATTA+GGG - chr3_1:6906129-6906148 Msa0346420:three_prime_UTR 10.0%
!! TATTAATATAAACTCAAATT+AGG - chr3_1:6906332-6906351 Msa0346420:three_prime_UTR 10.0%
!! ATAAATGATAGAATTAAAAA+TGG - chr3_1:6907325-6907344 Msa0346420:five_prime_UTR 10.0%
!!! GTTAAAGTATTTATCAAATT+AGG - chr3_1:6906128-6906147 Msa0346420:three_prime_UTR 15.0%
!!! ATATTAATATGGACTATATT+TGG - chr3_1:6906536-6906555 Msa0346420:CDS 15.0%
!!! TGATTTCTATATTTTCTTTA+AGG - chr3_1:6906586-6906605 Msa0346420:CDS 15.0%
!! ATATATTTATCAAACCAAAT+AGG + chr3_1:6906660-6906679 None:intergenic 15.0%
!! AAATAAAAACAATTCCAATT+CGG + chr3_1:6907203-6907222 None:intergenic 15.0%
!!! AAATAAAAATCTTTTACTTG+TGG - chr3_1:6907827-6907846 Msa0346420:intron 15.0%
!! AAAATGAATTAGTATTATGA+GGG - chr3_1:6908511-6908530 Msa0346420:intron 15.0%
!!! CATAATTTTCATTTCATTAA+GGG + chr3_1:6908546-6908565 None:intergenic 15.0%
!!! TCATAATTTTCATTTCATTA+AGG + chr3_1:6908547-6908566 None:intergenic 15.0%
!! TAATGAAATGAAAATTATGA+AGG - chr3_1:6908547-6908566 Msa0346420:intron 15.0%
!! AATGAAATGAAAATTATGAA+GGG - chr3_1:6908548-6908567 Msa0346420:intron 15.0%
!! ATAAAAAATTCATTCTATTC+AGG + chr3_1:6908583-6908602 None:intergenic 15.0%
!! ATATGGTTAAATAAGAATTA+TGG + chr3_1:6909418-6909437 None:intergenic 15.0%
!! TGAAATATTTATAAAATGAG+AGG - chr3_1:6910033-6910052 Msa0346420:intron 15.0%
!! ACATAATTTCAAATGTTATT+TGG - chr3_1:6910090-6910109 Msa0346420:five_prime_UTR 15.0%
!!! CATAATTTCAAATGTTATTT+GGG - chr3_1:6910091-6910110 Msa0346420:five_prime_UTR 15.0%
!!! GTTTTGAGATATATGTTTTT+GGG - chr3_1:6906300-6906319 Msa0346420:three_prime_UTR 20.0%
!!! TTTTGATATGTTCTAAAGTA+TGG - chr3_1:6906484-6906503 Msa0346420:intron 20.0%
!!! CGAAGATTTTGATATTAATA+TGG - chr3_1:6906525-6906544 Msa0346420:CDS 20.0%
!! TATTAAAGAGAGTTTGAATA+GGG - chr3_1:6907351-6907370 Msa0346420:intron 20.0%
!! AATATCTTCATATATGAGTA+TGG - chr3_1:6907730-6907749 Msa0346420:intron 20.0%
!!! CATTTTGGAATATAAATGAT+AGG + chr3_1:6908497-6908516 None:intergenic 20.0%
!!! CTCATAATACTAATTCATTT+TGG + chr3_1:6908512-6908531 None:intergenic 20.0%
!! CAAAATGAATTAGTATTATG+AGG - chr3_1:6908510-6908529 Msa0346420:intron 20.0%
!! ATGAAATGAAAATTATGAAG+GGG - chr3_1:6908549-6908568 Msa0346420:intron 20.0%
!!! TGATTGCTTTAAATGAAAAA+TGG + chr3_1:6908873-6908892 None:intergenic 20.0%
!!! AACATAAATTATTTTGTGAC+AGG - chr3_1:6908959-6908978 Msa0346420:intron 20.0%
!!! ACATAAATTATTTTGTGACA+GGG - chr3_1:6908960-6908979 Msa0346420:intron 20.0%
!! TTAACCATATATTCTATCTT+TGG - chr3_1:6909428-6909447 Msa0346420:intron 20.0%
!!! CATCATATATTTAGAGTTTA+GGG + chr3_1:6909897-6909916 None:intergenic 20.0%
!!! TCATCATATATTTAGAGTTT+AGG + chr3_1:6909898-6909917 None:intergenic 20.0%
!! AAACTCTAAATATATGATGA+AGG - chr3_1:6909898-6909917 Msa0346420:intron 20.0%
!!! AGTAATTTTAGGCATTTAAT+GGG + chr3_1:6910152-6910171 None:intergenic 20.0%
!! ATTAAATGCCTAAAATTACT+GGG - chr3_1:6910152-6910171 Msa0346420:five_prime_UTR 20.0%
!!! AAAATATACCCAGTAATTTT+AGG + chr3_1:6910163-6910182 None:intergenic 20.0%
!!! CACAGTAATATATTGATTAT+AGG + chr3_1:6910317-6910336 None:intergenic 20.0%
!! TTGCAAAAGATTTGAAATTG+AGG - chr3_1:6906229-6906248 Msa0346420:three_prime_UTR 25.0%
!! AAAGATTTGAAATTGAGGTA+TGG - chr3_1:6906234-6906253 Msa0346420:three_prime_UTR 25.0%
!!! GGTTTTGAGATATATGTTTT+TGG - chr3_1:6906299-6906318 Msa0346420:three_prime_UTR 25.0%
!!! ATTTATACGTTGACTTGAAA+TGG - chr3_1:6906364-6906383 Msa0346420:three_prime_UTR 25.0%
!!! TTTCTTTAAGGTTGTGAATT+TGG - chr3_1:6906598-6906617 Msa0346420:CDS 25.0%
!!! TTCTTTAAGGTTGTGAATTT+GGG - chr3_1:6906599-6906618 Msa0346420:CDS 25.0%
! GATTTCGATATAATCCTATT+TGG - chr3_1:6906643-6906662 Msa0346420:CDS 25.0%
!! CGGATTACTTGAATTTTATA+CGG - chr3_1:6906743-6906762 Msa0346420:intron 25.0%
!! ATTTGAGATAATGATGAAAC+AGG - chr3_1:6907087-6907106 Msa0346420:CDS 25.0%
!!! ATGAAACAGGTTTTTAAAAC+AGG - chr3_1:6907100-6907119 Msa0346420:CDS 25.0%
! TTAAAACAGGATTCATATCT+TGG - chr3_1:6907113-6907132 Msa0346420:CDS 25.0%
! TTGGAAATGTTGAATTTACA+GGG - chr3_1:6907132-6907151 Msa0346420:CDS 25.0%
! GTATTAAAGAGAGTTTGAAT+AGG - chr3_1:6907350-6907369 Msa0346420:intron 25.0%
! TGACAAATACACTATGAAAA+TGG + chr3_1:6907684-6907703 None:intergenic 25.0%
!! AAAGAATGCACTTTTATGTA+GGG + chr3_1:6907775-6907794 None:intergenic 25.0%
!! AAAAGAATGCACTTTTATGT+AGG + chr3_1:6907776-6907795 None:intergenic 25.0%
!! CTTTTATTGAAAGCAAAGTT+AGG - chr3_1:6907791-6907810 Msa0346420:intron 25.0%
!! CAAATTTTGAGCTAAAATGT+GGG + chr3_1:6908171-6908190 None:intergenic 25.0%
!! ACAAATTTTGAGCTAAAATG+TGG + chr3_1:6908172-6908191 None:intergenic 25.0%
!! AAATTCCAAGTTGAAATGTT+TGG + chr3_1:6908437-6908456 None:intergenic 25.0%
! AAACATTTCAACTTGGAATT+TGG - chr3_1:6908436-6908455 Msa0346420:five_prime_UTR 25.0%
! AACATTTCAACTTGGAATTT+GGG - chr3_1:6908437-6908456 Msa0346420:five_prime_UTR 25.0%
! TTTATTCGATAGTTGAATGA+AGG - chr3_1:6908598-6908617 Msa0346420:intron 25.0%
! AAGAAACCTATAGTTATTAG+AGG + chr3_1:6908793-6908812 None:intergenic 25.0%
! ATGCAAAAATAAGTTATGCA+TGG + chr3_1:6908918-6908937 None:intergenic 25.0%
!!! CATAAATTATTTTGTGACAG+GGG - chr3_1:6908961-6908980 Msa0346420:intron 25.0%
! AGTTTGTGAAAGATCATAAT+CGG - chr3_1:6909347-6909366 Msa0346420:intron 25.0%
! TTTGCCAAAGATAGAATATA+TGG + chr3_1:6909435-6909454 None:intergenic 25.0%
! GTTATATTATATAACATCCC+AGG - chr3_1:6909529-6909548 Msa0346420:intron 25.0%
!!! TTCTGCATTGTTTTTGTTTT+AGG - chr3_1:6909598-6909617 Msa0346420:intron 25.0%
!! GAAGGTTTAAAAGTTTTTGT+TGG - chr3_1:6909916-6909935 Msa0346420:intron 25.0%
! CATCATACAGAATTATGAAA+TGG + chr3_1:6910127-6910146 None:intergenic 25.0%
!! CAGTAATTTTAGGCATTTAA+TGG + chr3_1:6910153-6910172 None:intergenic 25.0%
! CATTAAATGCCTAAAATTAC+TGG - chr3_1:6910151-6910170 Msa0346420:five_prime_UTR 25.0%
! TTTAATGCAAGACAAAATCT+TGG - chr3_1:6910243-6910262 Msa0346420:five_prime_UTR 25.0%
! ATAGGTTAAGCATAATAAAG+CGG + chr3_1:6910299-6910318 None:intergenic 25.0%
CAACGAGAAAAATGTTCAAA+GGG + chr3_1:6906161-6906180 None:intergenic 30.0%
ACAACGAGAAAAATGTTCAA+AGG + chr3_1:6906162-6906181 None:intergenic 30.0%
!!! TTTTGAGACATGGAGAAATA+CGG - chr3_1:6906278-6906297 Msa0346420:three_prime_UTR 30.0%
TATCACAACAATGTATTTCC+CGG + chr3_1:6906433-6906452 None:intergenic 30.0%
TTCACGAGCATATTAAAAGT+AGG + chr3_1:6906459-6906478 None:intergenic 30.0%
AAATAAAAGAGTAAGTCACG+AGG + chr3_1:6906869-6906888 None:intergenic 30.0%
CTTGGAAATGTTGAATTTAC+AGG - chr3_1:6907131-6907150 Msa0346420:CDS 30.0%
TGGAAATGTTGAATTTACAG+GGG - chr3_1:6907133-6907152 Msa0346420:CDS 30.0%
TATTGAAGTGAAAACCGAAT+TGG - chr3_1:6907186-6907205 Msa0346420:five_prime_UTR 30.0%
!! GTTTGTCAAGTTGAATCAAT+AGG - chr3_1:6907227-6907246 Msa0346420:five_prime_UTR 30.0%
! TTGGTTCTTGTACTAGATTA+AGG - chr3_1:6907442-6907461 Msa0346420:intron 30.0%
TAGAGAGCTTAAACAACTTA+TGG + chr3_1:6907516-6907535 None:intergenic 30.0%
ATAAGTTGTTTAAGCTCTCT+AGG - chr3_1:6907515-6907534 Msa0346420:intron 30.0%
! AAAATCTTTTACTTGTGGAC+AGG - chr3_1:6907832-6907851 Msa0346420:intron 30.0%
! ATGGAATCTAGATTAGTTGA+TGG - chr3_1:6907917-6907936 Msa0346420:intron 30.0%
!! AGAGAATTTGTTATTCACCA+GGG + chr3_1:6908358-6908377 None:intergenic 30.0%
!! TAGAGAATTTGTTATTCACC+AGG + chr3_1:6908359-6908378 None:intergenic 30.0%
CGTAAATAAGAACCAGAAAT+AGG - chr3_1:6908382-6908401 Msa0346420:five_prime_UTR 30.0%
TTAGTATTATGAGGGTGATT+AGG - chr3_1:6908519-6908538 Msa0346420:intron 30.0%
TGAAAATTATGAAGGGGATT+AGG - chr3_1:6908555-6908574 Msa0346420:intron 30.0%
!! ATCTTGTATGAGGTATTGAA+AGG + chr3_1:6908683-6908702 None:intergenic 30.0%
!! TAGTTATTAGAGGCTCTAAA+GGG + chr3_1:6908783-6908802 None:intergenic 30.0%
! ATAGTTATTAGAGGCTCTAA+AGG + chr3_1:6908784-6908803 None:intergenic 30.0%
TTAGAGCCTCTAATAACTAT+AGG - chr3_1:6908784-6908803 Msa0346420:intron 30.0%
ATTATGGATTTACCACTGTT+TGG + chr3_1:6909402-6909421 None:intergenic 30.0%
!!! CATTTTGTTTTACGAAACCT+GGG + chr3_1:6909549-6909568 None:intergenic 30.0%
!!! TCATTTTGTTTTACGAAACC+TGG + chr3_1:6909550-6909569 None:intergenic 30.0%
!!! GTTTTTGTTTTAGGATGAGA+AGG - chr3_1:6909607-6909626 Msa0346420:intron 30.0%
TGAGAAGGATAAGAAAATTC+AGG - chr3_1:6909622-6909641 Msa0346420:intron 30.0%
TAGAGCTTCGGATTAAAAAA+CGG - chr3_1:6909654-6909673 Msa0346420:intron 30.0%
AAATACTCACACATATTGCA+GGG + chr3_1:6909824-6909843 None:intergenic 30.0%
TAAATACTCACACATATTGC+AGG + chr3_1:6909825-6909844 None:intergenic 30.0%
CAAGTGTCATCTTATCAATT+GGG + chr3_1:6909973-6909992 None:intergenic 30.0%
TCAAGTGTCATCTTATCAAT+TGG + chr3_1:6909974-6909993 None:intergenic 30.0%
!! ATAGTTGATTTTCTGATCGA+TGG - chr3_1:6910009-6910028 Msa0346420:intron 30.0%
AAATTATGTAAGACCGACTA+TGG + chr3_1:6910079-6910098 None:intergenic 30.0%
ACGTACAAAATGTTAGACAA+AGG + chr3_1:6910191-6910210 None:intergenic 30.0%
TTTCTGTATCACAGAAAATC+TGG + chr3_1:6910547-6910566 None:intergenic 30.0%
!!! CTGACTTGAATTTTGAGACA+TGG - chr3_1:6906268-6906287 Msa0346420:three_prime_UTR 35.0%
!! TTGCACATATTTTTGTGCAC+TGG - chr3_1:6906396-6906415 Msa0346420:intron 35.0%
TGCACTGGATTAATATGTTC+CGG - chr3_1:6906411-6906430 Msa0346420:intron 35.0%
! AGCTTTTTACTTAGCTGCTT+AGG + chr3_1:6906910-6906929 None:intergenic 35.0%
AATAGCTGCAGATACATCAA+TGG + chr3_1:6907016-6907035 None:intergenic 35.0%
TTGATGTATCTGCAGCTATT+TGG - chr3_1:6907016-6907035 Msa0346420:CDS 35.0%
CCATGTTGCATAACAAAGTA+TGG + chr3_1:6907901-6907920 None:intergenic 35.0%
! CCATACTTTGTTATGCAACA+TGG - chr3_1:6907898-6907917 Msa0346420:intron 35.0%
!! AGATTAGTTGATGGAAGTGA+CGG - chr3_1:6907926-6907945 Msa0346420:intron 35.0%
GTAGCTTAAGCAAATTACTG+AGG + chr3_1:6908133-6908152 None:intergenic 35.0%
GTTGTCTAGTTGTGTATATG+TGG - chr3_1:6908285-6908304 Msa0346420:intron 35.0%
TCTGTTGGAAATCCTATTTC+TGG + chr3_1:6908397-6908416 None:intergenic 35.0%
CAAGACCAAACATTTCAACT+TGG - chr3_1:6908429-6908448 Msa0346420:five_prime_UTR 35.0%
CGATAGTTGAATGAAGGAAA+AGG - chr3_1:6908604-6908623 Msa0346420:intron 35.0%
! TGAAAGGATGTTTGCTAAGA+GGG + chr3_1:6908667-6908686 None:intergenic 35.0%
! TTGAAAGGATGTTTGCTAAG+AGG + chr3_1:6908668-6908687 None:intergenic 35.0%
TTTGTCATGGATCTTGTATG+AGG + chr3_1:6908693-6908712 None:intergenic 35.0%
! GTTTCTTACGGTTTTTGTCA+TGG + chr3_1:6908706-6908725 None:intergenic 35.0%
CATATGGTTCCTTAACAACA+CGG + chr3_1:6909054-6909073 None:intergenic 35.0%
GTTGTTAAGGAACCATATGA+AGG - chr3_1:6909055-6909074 Msa0346420:intron 35.0%
ACAAATTCCATGCCTTCATA+TGG + chr3_1:6909070-6909089 None:intergenic 35.0%
AGGTTTGGATGTAATAAGGA+GGG - chr3_1:6909202-6909221 Msa0346420:intron 35.0%
CATATCAAGTATGATCAGTC+TGG - chr3_1:6909307-6909326 Msa0346420:intron 35.0%
AGTATGATCAGTCTGGAAAA+TGG - chr3_1:6909314-6909333 Msa0346420:intron 35.0%
GTATGATCAGTCTGGAAAAT+GGG - chr3_1:6909315-6909334 Msa0346420:intron 35.0%
AGGAACTAACAATAGAGCTT+CGG - chr3_1:6909642-6909661 Msa0346420:intron 35.0%
TCATCTTATCAATTGGGCTA+GGG + chr3_1:6909967-6909986 None:intergenic 35.0%
! AAAATGAGAGGTCACTTTGA+AGG - chr3_1:6910045-6910064 Msa0346420:intron 35.0%
CATAACACGTAAAATCTGCA+TGG + chr3_1:6910349-6910368 None:intergenic 35.0%
CATCCTTTGAACAGAACTTT+AGG + chr3_1:6910407-6910426 None:intergenic 35.0%
AGTCATCACCAAAGGATAAA+AGG + chr3_1:6910432-6910451 None:intergenic 35.0%
!! CTAGTCTTGTGACATAAAGT+TGG - chr3_1:6910463-6910482 Msa0346420:five_prime_UTR 35.0%
!!! GAGTTTTTGGTGGTTGTTTC+CGG + chr3_1:6905859-6905878 None:intergenic 40.0%
AACCACCAAAAACTCAGATC+CGG - chr3_1:6905864-6905883 Msa0346420:three_prime_UTR 40.0%
!!! GAGTTTTTGGTGGTTGTTTC+CGG + chr3_1:6905859-6905878 None:intergenic 40.0%
AACCACCAAAAACTCAGATC+CGG - chr3_1:6905864-6905883 Msa0346420:three_prime_UTR 40.0%
! AACAACCGGATCTGAGTTTT+TGG + chr3_1:6905924-6905943 None:intergenic 40.0%
TAACACTCTGTTGTCAAACG+CGG + chr3_1:6906112-6906131 None:intergenic 40.0%
GCACTGGATTAATATGTTCC+GGG - chr3_1:6906412-6906431 Msa0346420:intron 40.0%
GTTCACCTCTTTACGACATT+GGG - chr3_1:6906621-6906640 Msa0346420:CDS 40.0%
GAAATCCCAATGTCGTAAAG+AGG + chr3_1:6906629-6906648 None:intergenic 40.0%
TTCATGCGTATAAACGATCG+CGG - chr3_1:6906723-6906742 Msa0346420:intron 40.0%
TTGTGTGTTTCCCTTCTAGT+TGG - chr3_1:6906818-6906837 Msa0346420:intron 40.0%
!!! AGTTTTCGCAGTGTCACTTT+TGG - chr3_1:6906944-6906963 Msa0346420:CDS 40.0%
AGTTGAATCAATAGGCTTGC+CGG - chr3_1:6907235-6907254 Msa0346420:five_prime_UTR 40.0%
!!! CAAGGCTACATCTTTTTTGC+TGG - chr3_1:6907865-6907884 Msa0346420:intron 40.0%
!! GATTAGTTGATGGAAGTGAC+GGG - chr3_1:6907927-6907946 Msa0346420:intron 40.0%
!! ATTAGTTGATGGAAGTGACG+GGG - chr3_1:6907928-6907947 Msa0346420:intron 40.0%
! AGTTTCTGGGGATGGTAATT+TGG - chr3_1:6907955-6907974 Msa0346420:intron 40.0%
! GTTTCTGGGGATGGTAATTT+GGG - chr3_1:6907956-6907975 Msa0346420:intron 40.0%
TTAAGCGATGCTAAACACAG+TGG - chr3_1:6908213-6908232 Msa0346420:intron 40.0%
TGCTAAACACAGTGGAAAGT+CGG - chr3_1:6908221-6908240 Msa0346420:intron 40.0%
ACATAGCTACAGCACATTGT+AGG + chr3_1:6908334-6908353 None:intergenic 40.0%
! GAAAGGATGTTTGCTAAGAG+GGG + chr3_1:6908666-6908685 None:intergenic 40.0%
!! GACAGACTACTGGTTTCTTA+CGG + chr3_1:6908718-6908737 None:intergenic 40.0%
! TCTAAAGGGTTTTTCTCCCT+AGG + chr3_1:6908769-6908788 None:intergenic 40.0%
AGATCGGCAATGAGTTATTC+TGG - chr3_1:6909001-6909020 Msa0346420:intron 40.0%
GATCGGCAATGAGTTATTCT+GGG - chr3_1:6909002-6909021 Msa0346420:intron 40.0%
! AGTTATTCTGGGAGAGAGTT+GGG - chr3_1:6909013-6909032 Msa0346420:intron 40.0%
! TGATCATGACCGTGTTGTTA+AGG - chr3_1:6909042-6909061 Msa0346420:intron 40.0%
TAAGGAACCATATGAAGGCA+TGG - chr3_1:6909060-6909079 Msa0346420:intron 40.0%
TGATGAATATGCCTGACATG+TGG - chr3_1:6909117-6909136 Msa0346420:intron 40.0%
GATGAATATGCCTGACATGT+GGG - chr3_1:6909118-6909137 Msa0346420:intron 40.0%
CTTATTACATCCAAACCTGC+GGG + chr3_1:6909200-6909219 None:intergenic 40.0%
CCTTATTACATCCAAACCTG+CGG + chr3_1:6909201-6909220 None:intergenic 40.0%
CAGGTTTGGATGTAATAAGG+AGG - chr3_1:6909201-6909220 Msa0346420:intron 40.0%
GTCATTGTGTCAGCATACAA+GGG - chr3_1:6909224-6909243 Msa0346420:intron 40.0%
TTGGTCCAGTTCGTAAACAA+AGG - chr3_1:6909251-6909270 Msa0346420:intron 40.0%
TGGTCCAGTTCGTAAACAAA+GGG - chr3_1:6909252-6909271 Msa0346420:intron 40.0%
TGGAAATTTCGCCATCATTG+CGG - chr3_1:6909936-6909955 Msa0346420:intron 40.0%
GTCATCTTATCAATTGGGCT+AGG + chr3_1:6909968-6909987 None:intergenic 40.0%
GGTCCTAAAGTTCTGTTCAA+AGG - chr3_1:6910401-6910420 Msa0346420:five_prime_UTR 40.0%
! AGGATGTGCCTTTTATCCTT+TGG - chr3_1:6910421-6910440 Msa0346420:five_prime_UTR 40.0%
TAGCAAGTAGTCATCACCAA+AGG + chr3_1:6910440-6910459 None:intergenic 40.0%
AGGAAAAGGAAGAGGAAGGA+AGG + chr3_1:6905789-6905808 None:intergenic 45.0%
GAAGAGGAAAAGGAAGAGGA+AGG + chr3_1:6905793-6905812 None:intergenic 45.0%
GAAGGAAGAGGAAAAGGAAG+AGG + chr3_1:6905797-6905816 None:intergenic 45.0%
GAAGGAGAAGGAAGAGGAAA+AGG + chr3_1:6905803-6905822 None:intergenic 45.0%
TAGATCTGTAGAGGAGGAAG+AGG + chr3_1:6905825-6905844 None:intergenic 45.0%
TCCTCCTCTACAGATCTAAC+CGG - chr3_1:6905827-6905846 Msa0346420:three_prime_UTR 45.0%
AGATCCGGTTAGATCTGTAG+AGG + chr3_1:6905834-6905853 None:intergenic 45.0%
CAGATCTAACCGGATCTAAC+CGG - chr3_1:6905837-6905856 Msa0346420:three_prime_UTR 45.0%
! TGGTTGTTTCCGGTTAGATC+CGG + chr3_1:6905849-6905868 None:intergenic 45.0%
! AACGACCGGATCTGAGTTTT+TGG + chr3_1:6905872-6905891 None:intergenic 45.0%
! GTTTTGTCACCGGATCTAAC+CGG - chr3_1:6905889-6905908 Msa0346420:three_prime_UTR 45.0%
! TGGTTGTTTCCGGTTAGATC+CGG + chr3_1:6905849-6905868 None:intergenic 45.0%
!! AACCGGATCTGAGTTTTTGG+TGG + chr3_1:6905921-6905940 None:intergenic 45.0%
GGATCTGAGCACAAAACAAC+CGG + chr3_1:6905938-6905957 None:intergenic 45.0%
!! GGTTGTTTTGTGCTCAGATC+CGG - chr3_1:6905937-6905956 Msa0346420:three_prime_UTR 45.0%
! TTTGTGAAAAGCGGGTTTCG+CGG + chr3_1:6906016-6906035 None:intergenic 45.0%
GGTTCACCTCTTTACGACAT+TGG - chr3_1:6906620-6906639 Msa0346420:CDS 45.0%
ACAACCACTGCCAACTAGAA+GGG + chr3_1:6906831-6906850 None:intergenic 45.0%
AACAACCACTGCCAACTAGA+AGG + chr3_1:6906832-6906851 None:intergenic 45.0%
!!! TTCGCAGTGTCACTTTTGGT+AGG - chr3_1:6906948-6906967 Msa0346420:CDS 45.0%
GAAAGAGAAGCCAACCAAGA+GGG + chr3_1:6906974-6906993 None:intergenic 45.0%
AGAAAGAGAAGCCAACCAAG+AGG + chr3_1:6906975-6906994 None:intergenic 45.0%
! CTGCAGCTATTTGGTAGTCT+AGG - chr3_1:6907025-6907044 Msa0346420:CDS 45.0%
GTTGAATCAATAGGCTTGCC+GGG - chr3_1:6907236-6907255 Msa0346420:five_prime_UTR 45.0%
CGAACTAGAACATTCTAGCC+CGG + chr3_1:6907257-6907276 None:intergenic 45.0%
CCCAAAACACTAATCGTGAC+CGG + chr3_1:6907284-6907303 None:intergenic 45.0%
! CCGGTCACGATTAGTGTTTT+GGG - chr3_1:6907281-6907300 Msa0346420:five_prime_UTR 45.0%
!! ACTAAGTGGTGTTGGCTACA+TGG + chr3_1:6907412-6907431 None:intergenic 45.0%
ATGTAGCCAACACCACTTAG+TGG - chr3_1:6907411-6907430 Msa0346420:intron 45.0%
TGTAGCCAACACCACTTAGT+GGG - chr3_1:6907412-6907431 Msa0346420:intron 45.0%
CTTATCCCACTAAGTGGTGT+TGG + chr3_1:6907420-6907439 None:intergenic 45.0%
CAACACCACTTAGTGGGATA+AGG - chr3_1:6907418-6907437 Msa0346420:intron 45.0%
! TGGACAGGATCTTTTCAGCA+AGG - chr3_1:6907847-6907866 Msa0346420:intron 45.0%
GAATTCCTGCATCCTGTTCA+TGG - chr3_1:6908065-6908084 Msa0346420:intron 45.0%
TTGAGTCTTGCATGCTCTGT+TGG + chr3_1:6908412-6908431 None:intergenic 45.0%
GGGACACTGAGAAAGATGAA+TGG - chr3_1:6908457-6908476 Msa0346420:intron 45.0%
AATGAAGGAAAAGGCGATGC+AGG - chr3_1:6908613-6908632 Msa0346420:intron 45.0%
! TGGGAAAGAGCTTCTGGTTA+AGG - chr3_1:6908636-6908655 Msa0346420:intron 45.0%
!! GTCTCTTTGAGACAGACTAC+TGG + chr3_1:6908728-6908747 None:intergenic 45.0%
!! ACCGAATGATGGGTGTAGAT+CGG - chr3_1:6908985-6909004 Msa0346420:intron 45.0%
! GAGTTATTCTGGGAGAGAGT+TGG - chr3_1:6909012-6909031 Msa0346420:intron 45.0%
CATGACAAATCCCACATGTC+AGG + chr3_1:6909131-6909150 None:intergenic 45.0%
TCATGCGTGTGATGTCTTGT+CGG - chr3_1:6909146-6909165 Msa0346420:intron 45.0%
CCGCAGGTTTGGATGTAATA+AGG - chr3_1:6909198-6909217 Msa0346420:intron 45.0%
GGTCATTGTGTCAGCATACA+AGG - chr3_1:6909223-6909242 Msa0346420:intron 45.0%
GTCAGCATACAAGGGAAACT+TGG - chr3_1:6909232-6909251 Msa0346420:intron 45.0%
TAAACAAAGGGCCAGCACAA+GGG - chr3_1:6909264-6909283 Msa0346420:intron 45.0%
CTGGTGCAAAAGCTCTTCTA+TGG + chr3_1:6909795-6909814 None:intergenic 45.0%
! CTTATCAATTGGGCTAGGGT+CGG + chr3_1:6909963-6909982 None:intergenic 45.0%
GAAGGAACCAACTCCATAGT+CGG - chr3_1:6910063-6910082 Msa0346420:intron 45.0%
TGTAAGACCGACTATGGAGT+TGG + chr3_1:6910073-6910092 None:intergenic 45.0%
AGGAGAAGGAAAGAGGAAGG+AGG + chr3_1:6905769-6905788 None:intergenic 50.0%
GGAAGGAGAAGGAAAGAGGA+AGG + chr3_1:6905772-6905791 None:intergenic 50.0%
GGAAGGAAGGAGAAGGAAAG+AGG + chr3_1:6905776-6905795 None:intergenic 50.0%
AGGAAGAGGAAGGAAGGAGA+AGG + chr3_1:6905783-6905802 None:intergenic 50.0%
GAAGAGGAAGGAGAAGGAAG+AGG + chr3_1:6905809-6905828 None:intergenic 50.0%
TCTGTAGAGGAGGAAGAGGA+AGG + chr3_1:6905821-6905840 None:intergenic 50.0%
TCCGGTTAGATCTGTAGAGG+AGG + chr3_1:6905831-6905850 None:intergenic 50.0%
!! GACCGGATCTGAGTTTTTGG+TGG + chr3_1:6905869-6905888 None:intergenic 50.0%
!! AGATCCGGTCGTTTTGTCAC+CGG - chr3_1:6905879-6905898 Msa0346420:three_prime_UTR 50.0%
AGATCCGGTGACAAAACGAC+CGG + chr3_1:6905886-6905905 None:intergenic 50.0%
TGTGCTCAGATCCGGAAAAG+CGG - chr3_1:6905945-6905964 Msa0346420:three_prime_UTR 50.0%
GTAGCGCGTTTGTGAAAAGC+GGG + chr3_1:6906024-6906043 None:intergenic 50.0%
CGTAGCGCGTTTGTGAAAAG+CGG + chr3_1:6906025-6906044 None:intergenic 50.0%
! CTTTTCACAAACGCGCTACG+CGG - chr3_1:6906025-6906044 Msa0346420:three_prime_UTR 50.0%
! GTTTCCCTTCTAGTTGGCAG+TGG - chr3_1:6906824-6906843 Msa0346420:intron 50.0%
!! TCACTTTTGGTAGGCCCTCT+TGG - chr3_1:6906957-6906976 Msa0346420:CDS 50.0%
! TTTTGGTAGGCCCTCTTGGT+TGG - chr3_1:6906961-6906980 Msa0346420:CDS 50.0%
!! GAATGTTCTAGTTCGTGCGC+CGG - chr3_1:6907262-6907281 Msa0346420:five_prime_UTR 50.0%
! GCCGGTCACGATTAGTGTTT+TGG - chr3_1:6907280-6907299 Msa0346420:five_prime_UTR 50.0%
!! TGTTTTGGGTCGTGACAGTG+TGG - chr3_1:6907295-6907314 Msa0346420:five_prime_UTR 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr3_1:6907426-6907445 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr3_1:6907423-6907442 Msa0346420:intron 50.0%
TGTAGAGACCAGCCATGAAC+AGG + chr3_1:6908080-6908099 None:intergenic 50.0%
TGTGCTGTAGCTATGTACCC+TGG - chr3_1:6908338-6908357 Msa0346420:intron 50.0%
AAGGAAAAGGCGATGCAGGT+GGG - chr3_1:6908617-6908636 Msa0346420:intron 50.0%
CTGTCTCAAAGAGACATCGC+CGG - chr3_1:6908733-6908752 Msa0346420:intron 50.0%
CTCCCTAGGATAACCTGTAC+CGG + chr3_1:6908755-6908774 None:intergenic 50.0%
TGACAGGGGAACCGAATGAT+GGG - chr3_1:6908975-6908994 Msa0346420:intron 50.0%
GCCGATCTACACCCATCATT+CGG + chr3_1:6908989-6909008 None:intergenic 50.0%
! CTGGCCCTTTGTTTACGAAC+TGG + chr3_1:6909259-6909278 None:intergenic 50.0%
GTAAACAAAGGGCCAGCACA+AGG - chr3_1:6909263-6909282 Msa0346420:intron 50.0%
CTTACAACCTTCCCTTGTGC+TGG + chr3_1:6909278-6909297 None:intergenic 50.0%
CAGCACAAGGGAAGGTTGTA+AGG - chr3_1:6909276-6909295 Msa0346420:intron 50.0%
CACAAGGGAAGGTTGTAAGG+CGG - chr3_1:6909279-6909298 Msa0346420:intron 50.0%
TCACGTGGAGAGACTACTAG+TGG + chr3_1:6909373-6909392 None:intergenic 50.0%
ACATATTGCAGGGCTACGTC+TGG + chr3_1:6909814-6909833 None:intergenic 50.0%
GTTATGCAGAATGCACAGCG+TGG - chr3_1:6910363-6910382 Msa0346420:five_prime_UTR 50.0%
GCGTGGTGTGATCACTAACT+TGG - chr3_1:6910380-6910399 Msa0346420:five_prime_UTR 50.0%
GAGGAGGAAGAGGAAGGAGA+AGG + chr3_1:6905815-6905834 None:intergenic 55.0%
!! CTAACGCGGCAGGCTGATTT+TGG - chr3_1:6906055-6906074 Msa0346420:three_prime_UTR 55.0%
TCCTGCATCCTGTTCATGGC+TGG - chr3_1:6908069-6908088 Msa0346420:intron 55.0%
ACCAGCCATGAACAGGATGC+AGG + chr3_1:6908073-6908092 None:intergenic 55.0%
GAAGGAAAAGGCGATGCAGG+TGG - chr3_1:6908616-6908635 Msa0346420:intron 55.0%
TGCAGGTGGGAAAGAGCTTC+TGG - chr3_1:6908630-6908649 Msa0346420:intron 55.0%
CAAAGAGACATCGCCGGTAC+AGG - chr3_1:6908739-6908758 Msa0346420:intron 55.0%
TCGCCGGTACAGGTTATCCT+AGG - chr3_1:6908749-6908768 Msa0346420:intron 55.0%
CGCCGGTACAGGTTATCCTA+GGG - chr3_1:6908750-6908769 Msa0346420:intron 55.0%
GTGACAGGGGAACCGAATGA+TGG - chr3_1:6908974-6908993 Msa0346420:intron 55.0%
TGTCGGCGCTCAGAAAGAGA+TGG - chr3_1:6909163-6909182 Msa0346420:intron 55.0%
GGCGCTCAGAAAGAGATGGA+AGG - chr3_1:6909167-6909186 Msa0346420:intron 55.0%
ACTGTTTGGCGTGCTTCACG+TGG + chr3_1:6909388-6909407 None:intergenic 55.0%
ACGTGAAGCACGCCAAACAG+TGG - chr3_1:6909387-6909406 Msa0346420:five_prime_UTR 55.0%
!!! GGTCAAAGCGGCCGCTTTTC+CGG + chr3_1:6905959-6905978 None:intergenic 60.0%
!! GGGTCGATAGCGGGTCAAAG+CGG + chr3_1:6905971-6905990 None:intergenic 60.0%
!!! GTTTCGCGGCCGCTTTTACG+GGG + chr3_1:6906002-6906021 None:intergenic 60.0%
!!! GGTTTCGCGGCCGCTTTTAC+GGG + chr3_1:6906003-6906022 None:intergenic 60.0%
!!! GGGTTTCGCGGCCGCTTTTA+CGG + chr3_1:6906004-6906023 None:intergenic 60.0%
TTCACAAACGCGCTACGCGG+TGG - chr3_1:6906028-6906047 Msa0346420:three_prime_UTR 60.0%
TACGCGGTGGCGTTCTAACG+CGG - chr3_1:6906041-6906060 Msa0346420:three_prime_UTR 60.0%
! AGTGACGGGGCGCAAGTTTC+TGG - chr3_1:6907941-6907960 Msa0346420:intron 60.0%
! GTGACGGGGCGCAAGTTTCT+GGG - chr3_1:6907942-6907961 Msa0346420:intron 60.0%
TGACGGGGCGCAAGTTTCTG+GGG - chr3_1:6907943-6907962 Msa0346420:intron 60.0%
ATGGAAGGATTCTCGCCCGC+AGG - chr3_1:6909182-6909201 Msa0346420:intron 60.0%
AGGATTCTCGCCCGCAGGTT+TGG - chr3_1:6909187-6909206 Msa0346420:intron 60.0%
CAAAGGGCCAGCACAAGGGA+AGG - chr3_1:6909268-6909287 Msa0346420:intron 60.0%
CTAGGGTCGGACCGCAATGA+TGG + chr3_1:6909950-6909969 None:intergenic 60.0%
! GCTTTTACGGGGAGCGGAGC+GGG + chr3_1:6905991-6906010 None:intergenic 65.0%
! CGCTTTTACGGGGAGCGGAG+CGG + chr3_1:6905992-6906011 None:intergenic 65.0%
CGCTCCGCTCCCCGTAAAAG+CGG - chr3_1:6905990-6906009 Msa0346420:three_prime_UTR 65.0%
TTGTCAAACGCGGCCGCTCC+CGG + chr3_1:6906102-6906121 None:intergenic 65.0%
! GGGGCGCAAGTTTCTGGGGA+TGG - chr3_1:6907947-6907966 Msa0346420:intron 65.0%
GAGCGGAGCGGGTCGATAGC+GGG + chr3_1:6905980-6905999 None:intergenic 70.0%
GGAGCGGAGCGGGTCGATAG+CGG + chr3_1:6905981-6906000 None:intergenic 70.0%
!!! GCGGCCGCTTTTACGGGGAG+CGG + chr3_1:6905997-6906016 None:intergenic 70.0%
CGGTGGCGTTCTAACGCGGC+AGG - chr3_1:6906045-6906064 Msa0346420:three_prime_UTR 70.0%
! GGCGCTATCGCGGCGCGGAG+CGG + chr3_1:6906081-6906100 None:intergenic 80.0%
! GCTCCGCGCCGCGATAGCGC+CGG - chr3_1:6906080-6906099 Msa0346420:three_prime_UTR 80.0%
! CTCCGCGCCGCGATAGCGCC+GGG - chr3_1:6906081-6906100 Msa0346420:three_prime_UTR 80.0%
! CTCCCGGCGCTATCGCGGCG+CGG + chr3_1:6906086-6906105 None:intergenic 80.0%
!! CGCCGCGATAGCGCCGGGAG+CGG - chr3_1:6906086-6906105 Msa0346420:three_prime_UTR 80.0%
! GGCCGCTCCCGGCGCTATCG+CGG + chr3_1:6906091-6906110 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 6905743 6910582 6905743 ID=Msa0346420;Name=Msa0346420
chr3_1 mRNA 6905743 6910582 6905743 ID=Msa0346420-mRNA-1;Parent=Msa0346420;Name=Msa0346420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=861|1|1|1|0.4|0|6|676|153
chr3_1 exon 6905743 6906405 6905743 ID=Msa0346420-mRNA-1:exon:1951;Parent=Msa0346420-mRNA-1
chr3_1 exon 6906492 6906705 6906492 ID=Msa0346420-mRNA-1:exon:1950;Parent=Msa0346420-mRNA-1
chr3_1 exon 6906917 6907344 6906917 ID=Msa0346420-mRNA-1:exon:1949;Parent=Msa0346420-mRNA-1
chr3_1 exon 6908348 6908471 6908348 ID=Msa0346420-mRNA-1:exon:1948;Parent=Msa0346420-mRNA-1
chr3_1 exon 6909360 6909421 6909360 ID=Msa0346420-mRNA-1:exon:1947;Parent=Msa0346420-mRNA-1
chr3_1 exon 6910075 6910582 6910075 ID=Msa0346420-mRNA-1:exon:1946;Parent=Msa0346420-mRNA-1
chr3_1 five_prime_UTR 6910075 6910582 6910075 ID=Msa0346420-mRNA-1:five_prime_utr;Parent=Msa0346420-mRNA-1
chr3_1 five_prime_UTR 6909360 6909421 6909360 ID=Msa0346420-mRNA-1:five_prime_utr;Parent=Msa0346420-mRNA-1
chr3_1 five_prime_UTR 6908348 6908471 6908348 ID=Msa0346420-mRNA-1:five_prime_utr;Parent=Msa0346420-mRNA-1
chr3_1 five_prime_UTR 6907178 6907344 6907178 ID=Msa0346420-mRNA-1:five_prime_utr;Parent=Msa0346420-mRNA-1
chr3_1 CDS 6906917 6907177 6906917 ID=Msa0346420-mRNA-1:cds;Parent=Msa0346420-mRNA-1
chr3_1 CDS 6906505 6906705 6906505 ID=Msa0346420-mRNA-1:cds;Parent=Msa0346420-mRNA-1
chr3_1 three_prime_UTR 6906492 6906504 6906492 ID=Msa0346420-mRNA-1:three_prime_utr;Parent=Msa0346420-mRNA-1
chr3_1 three_prime_UTR 6905743 6906405 6905743 ID=Msa0346420-mRNA-1:three_prime_utr;Parent=Msa0346420-mRNA-1
Gene Sequence

>Msa0346420

ATGCGTGTGATGTCTTGTCGGCGCTCAGAAAGAGATGGAAGGATTCTCGCCCGCAGGTTTGGATGTAATAAGGAGGGTCATTGTGTCAGCATACAAGGGAAACTTGGTCCAGTTCGTAAACAAAGGGCCAGCACAAGGGAAGGTTGTAAGGCGGTGATTCATATCAAGTATGATCAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAAGATCATAATCGGCCACTAGTAGTCTCTCCACGTGAAGCACGCCAAACAGTGGATGAGAAGGATAAGAAAATTCAGGAACTAACAATAGAGCTTCGGATTAAAAAACGGTTGTGTGTAACATATCAAGAACAGTTGACGTCTTTTATGAAAATTGTCGAAGAGCACAGTGACAAGCTGTCTGCAAGAATTCATCACATACTTGATAATCTTAGAGAATATGAATCCATAGAAGAGCTTTTGCACCAGACGTAG
Protein sequence

>Msa0346420

MRVMSCRRSERDGRILARRFGCNKEGHCVSIQGKLGPVRKQRASTREGCKAVIHIKYDQSGKWVITKFVKDHNRPLVVSPREARQTVDEKDKKIQELTIELRIKKRLCVTYQEQLTSFMKIVEEHSDKLSARIHHILDNLREYESIEELLHQT*