AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0346940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346940 MtrunA17_Chr4g0009491 83.032 442 55 1 37 478 11 432 0.0 748
Msa0346940 MtrunA17_Chr4g0009491 53.171 205 74 1 18 200 220 424 1.79e-65 218
Msa0346940 MtrunA17_Chr4g0009491 52.113 213 80 1 285 497 11 201 4.64e-64 215
Msa0346940 MtrunA17_Chr3g0077361 71.128 523 113 3 1 522 20 505 0.0 741
Msa0346940 MtrunA17_Chr3g0077381 80.361 443 57 3 37 478 34 447 0.0 708
Msa0346940 MtrunA17_Chr3g0077381 47.431 253 87 3 276 526 25 233 4.40e-61 207
Msa0346940 MtrunA17_Chr3g0077381 51.707 205 70 2 18 200 242 439 2.44e-59 202
Msa0346940 MtrunA17_Chr3g0077411 63.346 532 174 5 1 522 1 521 0.0 644
Msa0346940 MtrunA17_Chr3g0077461 57.588 481 167 8 38 516 22 467 0.0 518
Msa0346940 MtrunA17_Chr3g0077461 49.167 240 110 5 18 248 232 468 2.04e-61 209
Msa0346940 MtrunA17_Chr3g0077451 65.833 240 71 2 285 523 10 239 9.47e-109 324
Msa0346940 MtrunA17_Chr3g0077451 57.078 219 81 2 37 242 10 228 1.64e-74 236
Msa0346940 MtrunA17_Chr5g0429931 65.401 237 82 0 286 522 10 246 5.17e-105 315
Msa0346940 MtrunA17_Chr5g0429931 56.388 227 77 1 38 242 10 236 2.24e-77 243
Msa0346940 MtrunA17_Chr3g0077431 63.810 210 65 2 315 523 1 200 1.83e-89 273
Msa0346940 MtrunA17_Chr3g0077431 53.968 189 74 2 67 242 1 189 1.10e-56 188
Msa0346940 MtrunA17_Chr3g0077421 62.381 210 67 2 315 522 1 200 4.39e-86 264
Msa0346940 MtrunA17_Chr3g0077421 53.684 190 74 2 67 242 1 190 2.88e-54 181
Msa0346940 MtrunA17_Chr3g0077441 62.381 210 67 2 315 522 1 200 4.39e-86 264
Msa0346940 MtrunA17_Chr3g0077441 53.684 190 74 2 67 242 1 190 2.88e-54 181
Msa0346940 MtrunA17_Chr3g0131891 29.553 291 164 6 270 521 18 306 3.88e-28 114
Msa0346940 MtrunA17_Chr3g0131891 27.240 279 144 7 16 235 12 290 5.78e-20 91.3
Msa0346940 MtrunA17_Chr7g0233561 27.974 311 175 7 263 524 8 318 2.58e-26 109
Msa0346940 MtrunA17_Chr7g0233561 30.286 175 116 3 22 194 17 187 2.55e-18 86.3
Msa0346940 MtrunA17_Chr8g0390841 29.293 297 157 9 271 518 39 331 2.74e-26 112
Msa0346940 MtrunA17_Chr8g0390841 32.323 99 67 0 23 121 39 137 6.62e-14 74.3
Msa0346940 MtrunA17_Chr1g0162441 45.455 99 54 0 271 369 7 105 1.21e-25 109
Msa0346940 MtrunA17_Chr1g0162441 40.404 99 59 0 23 121 7 105 3.20e-21 96.3
Msa0346940 MtrunA17_Chr3g0103181 29.749 279 155 8 270 517 11 279 3.42e-25 105
Msa0346940 MtrunA17_Chr3g0103181 27.881 269 139 8 22 241 11 273 2.30e-20 91.3
Msa0346940 MtrunA17_Chr3g0103171 28.358 268 149 6 286 517 5 265 2.54e-24 102
Msa0346940 MtrunA17_Chr3g0103171 26.953 256 134 6 38 241 5 259 9.91e-19 86.3
Msa0346940 MtrunA17_Chr1g0208771 28.283 297 148 11 286 527 12 298 8.05e-23 101
Msa0346940 MtrunA17_Chr1g0208771 33.333 84 56 0 38 121 12 95 4.92e-12 68.2
Msa0346940 MtrunA17_Chr7g0233521 29.057 265 158 4 287 521 2 266 8.56e-23 98.6
Msa0346940 MtrunA17_Chr7g0233521 34.884 86 56 0 39 124 2 87 2.03e-15 76.6
Msa0346940 MtrunA17_Chr7g0233531 27.372 274 151 7 287 521 2 266 5.70e-22 95.9
Msa0346940 MtrunA17_Chr7g0233531 23.600 250 137 7 39 235 2 250 9.53e-15 74.7
Msa0346940 MtrunA17_Chr4g0033961 41.176 102 60 0 268 369 3 104 2.07e-21 96.7
Msa0346940 MtrunA17_Chr4g0033961 34.513 113 65 1 9 121 1 104 3.92e-16 80.9
Msa0346940 MtrunA17_Chr1g0163071 28.231 294 141 8 287 518 2 287 1.70e-20 92.4
Msa0346940 MtrunA17_Chr1g0163071 37.647 85 53 0 39 123 2 86 4.78e-14 73.2
Msa0346940 MtrunA17_Chr1g0162411 40.777 103 61 0 271 373 7 109 2.33e-20 94.0
Msa0346940 MtrunA17_Chr1g0162411 33.613 119 68 1 23 141 7 114 2.42e-15 78.6
Msa0346940 MtrunA17_Chr7g0233541 27.586 290 147 10 287 521 2 283 8.02e-20 90.1
Msa0346940 MtrunA17_Chr7g0233541 31.250 112 72 1 39 145 2 113 1.38e-15 77.4
Msa0346940 MtrunA17_Chr5g0419201 34.579 107 70 0 263 369 8 114 1.72e-19 86.7
Msa0346940 MtrunA17_Chr5g0419201 35.354 99 64 0 23 121 16 114 9.82e-18 81.6
Msa0346940 MtrunA17_Chr5g0421921 39.640 111 66 1 412 522 3 112 4.26e-19 83.2
Msa0346940 MtrunA17_Chr5g0421731 39.640 111 66 1 412 522 3 112 4.26e-19 83.2
Msa0346940 MtrunA17_Chr5g0421851 36.306 157 80 4 385 522 32 187 6.34e-19 84.7
Msa0346940 MtrunA17_Chr4g0067431 28.328 293 157 8 270 511 14 304 7.75e-19 87.8
Msa0346940 MtrunA17_Chr7g0233571 34.400 125 82 0 270 394 9 133 2.36e-18 84.0
Msa0346940 MtrunA17_Chr7g0233571 34.653 101 66 0 22 122 9 109 7.91e-17 79.7
Msa0346940 MtrunA17_Chr3g0103151 36.154 130 70 2 270 399 11 127 2.89e-17 79.3
Msa0346940 MtrunA17_Chr3g0103151 37.000 100 61 1 22 121 11 108 3.06e-15 73.6
Msa0346940 MtrunA17_Chr1g0163221 26.316 285 169 10 270 517 10 290 5.32e-17 82.8
Msa0346940 MtrunA17_Chr1g0163221 23.129 294 156 9 15 246 3 288 2.13e-11 65.5
Msa0346940 MtrunA17_Chr1g0162421 45.161 62 34 0 281 342 3 64 2.88e-16 73.2
Msa0346940 MtrunA17_Chr1g0163251 26.471 272 166 9 280 520 14 282 4.83e-16 80.1
Msa0346940 MtrunA17_Chr1g0163131 24.579 297 164 9 270 515 17 304 5.27e-16 79.0
Msa0346940 MtrunA17_Chr3g0103191 38.384 99 59 1 23 121 12 108 8.99e-15 74.3
Msa0346940 MtrunA17_Chr3g0103191 41.860 86 50 0 284 369 23 108 1.33e-14 73.9
Msa0346940 MtrunA17_Chr3g0103201 27.650 217 127 6 330 517 5 220 1.15e-13 70.5
Msa0346940 MtrunA17_Chr6g0467351 32.143 140 91 2 270 405 14 153 1.54e-13 70.5
Msa0346940 MtrunA17_Chr1g0163101 29.921 127 86 2 265 391 11 134 5.97e-13 67.4
Msa0346940 MtrunA17_Chr1g0163061 35.577 104 66 1 270 372 14 117 5.38e-12 66.6
Msa0346940 MtrunA17_Chr1g0171611 24.254 268 180 7 269 519 7 268 5.46e-11 63.5
Msa0346940 MtrunA17_Chr6g0476181 36.082 97 59 2 287 383 2 95 6.89e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346940 AT3G18990.1 27.463 335 160 7 271 522 6 340 6.97e-29 117
Msa0346940 AT3G18990.1 38.384 99 61 0 23 121 6 104 1.15e-18 87.8
Msa0346940 AT3G18990.2 27.545 334 159 7 271 521 6 339 1.84e-28 117
Msa0346940 AT3G18990.2 38.384 99 61 0 23 121 6 104 1.69e-18 87.8
Msa0346940 AT3G18960.2 36.364 132 81 1 240 371 2 130 2.77e-18 83.6
Msa0346940 AT3G18960.2 35.185 108 70 0 16 123 23 130 1.82e-16 78.2
Msa0346940 AT3G18960.1 35.556 135 84 1 240 374 2 133 4.56e-18 83.6
Msa0346940 AT3G18960.1 35.185 108 70 0 16 123 23 130 4.58e-16 77.4
Msa0346940 AT4G01580.1 34.074 135 86 1 240 374 2 133 7.03e-18 82.4
Msa0346940 AT4G01580.1 29.412 153 95 2 3 155 15 154 1.24e-17 81.6
Msa0346940 AT1G49475.1 40.541 111 65 1 269 379 32 141 1.56e-17 81.3
Msa0346940 AT1G49475.1 33.813 139 81 2 4 132 5 142 1.41e-16 78.6
Msa0346940 AT1G26680.6 21.494 549 347 20 22 516 14 532 4.18e-16 82.0
Msa0346940 AT1G26680.5 21.494 549 347 20 22 516 14 532 4.45e-16 82.0
Msa0346940 AT3G18960.3 38.462 91 56 0 284 374 6 96 8.37e-14 70.1
Msa0346940 AT3G18960.3 35.227 88 57 0 36 123 6 93 2.40e-12 65.9
Msa0346940 AT1G26680.4 20.702 541 350 19 22 511 14 526 3.69e-13 72.8
Msa0346940 AT1G26680.1 20.702 541 350 19 22 511 14 526 4.15e-13 72.8
Msa0346940 AT1G26680.3 20.471 552 360 22 22 516 14 543 4.29e-12 69.3
Msa0346940 AT1G49480.3 36.607 112 62 3 142 248 113 220 3.42e-11 63.5
Msa0346940 AT1G49480.3 35.714 112 62 4 417 522 118 225 4.28e-11 63.5
Msa0346940 AT1G49480.1 36.607 112 62 3 142 248 113 220 3.42e-11 63.5
Msa0346940 AT1G49480.1 35.714 112 62 4 417 522 118 225 4.28e-11 63.5
Msa0346940 AT1G49480.2 36.607 112 62 3 142 248 113 220 3.42e-11 63.5
Msa0346940 AT1G49480.2 35.714 112 62 4 417 522 118 225 4.28e-11 63.5
Msa0346940 AT1G26680.2 20.732 492 321 19 78 516 55 530 4.79e-11 65.9

Find 85 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCTTTCCTTGAGAATTT+TGG 0.134641 3_1:+7837187 None:intergenic
GGCAGCACAATTCACTCTTT+TGG 0.221967 3_1:+7838677 None:intergenic
ACTGCTTTCCTTGAGAGTTT+TGG 0.223060 3_1:+7838441 None:intergenic
GATGAGTTTATAACAAGATT+TGG 0.242784 3_1:-7837782 Msa0346940:CDS
TTGTTGTCCTTTACAAATTT+CGG 0.251174 3_1:+7837102 None:intergenic
GATGAGTTTATAAATAGATT+TGG 0.270080 3_1:-7838978 Msa0346940:CDS
AAATACTATTCGTTAGGATA+TGG 0.294914 3_1:-7837644 Msa0346940:CDS
TATGGCTTTCATAAAATGTT+TGG 0.299040 3_1:+7839721 None:intergenic
TACTATCTCTTTGTCTTGAA+TGG 0.300264 3_1:+7838038 None:intergenic
TTCAAAACTCCAAGTACTAA+TGG 0.347246 3_1:-7838732 Msa0346940:CDS
CTTTGATCTCCATTAGTACT+TGG 0.349576 3_1:+7838723 None:intergenic
ATTTGCATTGAGAATGATTT+GGG 0.350230 3_1:+7837138 None:intergenic
ATGAGTTTATAAATAGATTT+GGG 0.360502 3_1:-7838977 Msa0346940:CDS
ATGAGTTTATAACAAGATTT+GGG 0.367534 3_1:-7837781 Msa0346940:CDS
TGGAGTGCGATTGGAACATT+TGG 0.367737 3_1:+7837207 None:intergenic
CTACTCCTATGAAAAGTTCC+AGG 0.375640 3_1:-7837493 Msa0346940:CDS
TTGAATGGGCAAGGGAAGTA+TGG 0.385863 3_1:+7838053 None:intergenic
TATTTGCATTGAGAATGATT+TGG 0.397480 3_1:+7837137 None:intergenic
AATCTATTTATAAACTCATC+TGG 0.412994 3_1:+7838981 None:intergenic
AATCTTGTTATAAACTCATC+TGG 0.413404 3_1:+7837785 None:intergenic
ATGATCTGGAGGAGGAAGTA+TGG 0.415345 3_1:+7839703 None:intergenic
GCGACGGAACACATCTTTGC+CGG 0.419956 3_1:+7839768 None:intergenic
ATTCTGTAGTACGTTCCTTC+TGG 0.420347 3_1:-7838506 Msa0346940:intron
TTTGCAAAATACTATTCGTT+AGG 0.426106 3_1:-7837650 Msa0346940:CDS
ACTATCTCTTTGTCTTGAAT+GGG 0.432252 3_1:+7838039 None:intergenic
CAATGACAGAAAACGAAGTA+AGG 0.437201 3_1:-7838098 Msa0346940:CDS
ATGTGTTTGAGCTGATTAAG+AGG 0.439595 3_1:-7838313 Msa0346940:CDS
AAGGGAAAACAATCTATTAG+AGG 0.448831 3_1:-7838345 Msa0346940:CDS
TGATGGTCGTGAATGGGAAA+TGG 0.450553 3_1:-7838919 Msa0346940:CDS
AATGGAGATCAAAGCATAAA+GGG 0.451246 3_1:-7838714 Msa0346940:CDS
TTCTCAATGCAAATAACAAT+GGG 0.452154 3_1:-7837129 Msa0346940:CDS
TAATGGAGATCAAAGCATAA+AGG 0.452714 3_1:-7838715 Msa0346940:CDS
TTGGAATCTTTCTCCGGTGC+CGG 0.453652 3_1:+7839740 None:intergenic
CTGTTCCTGATGGTCGTGAT+TGG 0.457555 3_1:-7837730 Msa0346940:CDS
CTCTTTGTCTTGAATGGGCA+AGG 0.457912 3_1:+7838044 None:intergenic
AAATGTTTGGAATCTTTCTC+CGG 0.458549 3_1:+7839734 None:intergenic
TATTGTATTTCGAATACAAA+AGG 0.459107 3_1:-7838410 Msa0346940:CDS
ATGTTTCGTGCGGTTGACTA+CGG 0.465735 3_1:-7837012 Msa0346940:CDS
TCTTTCTCCGGTGCCGGTGA+CGG 0.473264 3_1:+7839746 None:intergenic
GGGATTTCCGAAATTTGTAA+AGG 0.476832 3_1:-7837109 Msa0346940:CDS
ATTTCCCATTCACGACCATC+AGG 0.482051 3_1:+7838921 None:intergenic
CTGTGTGTTTGTTTCTCCAT+TGG 0.483276 3_1:+7837520 None:intergenic
AAAATTCTCAAGGAAAGCAT+TGG 0.485732 3_1:-7837185 Msa0346940:CDS
TCCGTCGCCGTCACCGGCAC+CGG 0.490647 3_1:-7839753 Msa0346940:CDS
GCAACTTGTAGCACAACAAC+AGG 0.493988 3_1:+7838287 None:intergenic
ACTGTTGCCAATTGTTGCTA+AGG 0.496870 3_1:+7838868 None:intergenic
GAATACTATTCCATCAGTTA+CGG 0.500398 3_1:-7838840 Msa0346940:CDS
TTGTTCCTGATGGTCGTGAA+TGG 0.506528 3_1:-7838926 Msa0346940:CDS
ATGTGTTCCGTCGCCGTCAC+CGG 0.509296 3_1:-7839759 Msa0346940:CDS
GCTATCATTATTGTTCCTGA+TGG 0.512138 3_1:-7838936 Msa0346940:CDS
ATTCTCAATGCAAATAACAA+TGG 0.514820 3_1:-7837130 Msa0346940:CDS
CTCAAAACTCTAAGTACCAA+TGG 0.522769 3_1:-7837536 Msa0346940:CDS
ACTGCCACTTGTTTCAACCC+TGG 0.525622 3_1:+7837475 None:intergenic
TCCGGTGCCGGTGACGGCGA+CGG 0.526161 3_1:+7839752 None:intergenic
TGAGTTGATCAAGGAGAAGC+CGG 0.526203 3_1:-7837052 Msa0346940:CDS
TTGTGTGTTTGAGTTGATCA+AGG 0.529271 3_1:-7837061 Msa0346940:CDS
GATGGTCGTGAATGGGAAAT+GGG 0.538439 3_1:-7838918 Msa0346940:CDS
GTGGATTCAGTAAATTTGCA+AGG 0.539955 3_1:-7838364 Msa0346940:CDS
TATTATATTTGATGTAACTT+CGG 0.545296 3_1:-7837576 Msa0346940:CDS
TGTTCCTGATGGTCGTGAAT+GGG 0.546552 3_1:-7838925 Msa0346940:CDS
TTTCATTCAAAATCCGTCAA+GGG 0.556507 3_1:-7838627 Msa0346940:CDS
TACATATCTTTCAAATACGA+AGG 0.575333 3_1:-7837617 Msa0346940:CDS
TCTTTGTCTTGAATGGGCAA+GGG 0.579549 3_1:+7838045 None:intergenic
TTCATGCTCCAAAACTCTCA+AGG 0.581396 3_1:-7838449 Msa0346940:CDS
AGGGAAAACAATCTATTAGA+GGG 0.584707 3_1:-7838344 Msa0346940:CDS
TGGATTCAGTAAATTTGCAA+GGG 0.590777 3_1:-7838363 Msa0346940:CDS
AAAACTCTCAAGGAAAGCAG+TGG 0.591204 3_1:-7838439 Msa0346940:CDS
CAATGCAGCCTCCATGCGGA+AGG 0.592466 3_1:-7838131 Msa0346940:intron
AATTGCTAAGCGAAATCTTG+TGG 0.593067 3_1:-7837354 Msa0346940:intron
GACTGGGCACACCTTCCGCA+TGG 0.593609 3_1:+7838120 None:intergenic
AATGACAGAAAACGAAGTAA+GGG 0.598240 3_1:-7838097 Msa0346940:CDS
ATCGCACTCCAAAATTCTCA+AGG 0.598710 3_1:-7837195 Msa0346940:CDS
ACAAGTTGCAGCAATTTGCA+CGG 0.599452 3_1:-7838273 Msa0346940:intron
TACTCCTATGAAAAGTTCCA+GGG 0.613948 3_1:-7837492 Msa0346940:CDS
AAGAAACAATGAAGACTCAC+CGG 0.615286 3_1:-7839787 None:intergenic
GCTACAGTTACTGTTCCTGA+TGG 0.628443 3_1:-7837740 Msa0346940:CDS
AGTTCCAGGGTTGAAACAAG+TGG 0.632824 3_1:-7837479 Msa0346940:CDS
TCATCAATGCGAATAACGAG+TGG 0.633101 3_1:-7838383 Msa0346940:CDS
AAACTCTCAAGGAAAGCAGT+GGG 0.637619 3_1:-7838438 Msa0346940:CDS
GAAATGGGACTGACGAAATG+TGG 0.643468 3_1:-7838903 Msa0346940:CDS
CATTCATCATCAAAGTAGAG+AGG 0.651757 3_1:+7836984 None:intergenic
AAAAGTCACAATGTTTCGTG+CGG 0.653466 3_1:-7837022 Msa0346940:CDS
AAGGACAACAATCTGACACA+TGG 0.654644 3_1:-7837090 Msa0346940:CDS
TGGGCACACCTTCCGCATGG+AGG 0.664596 3_1:+7838123 None:intergenic
ATTGCAATGCAGCCTCCATG+CGG 0.701402 3_1:-7838135 Msa0346940:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTATTCTTATCAT+CGG + chr3_1:7838826-7838845 None:intergenic 10.0%
!! ATTAATTATTAGTGTATGTT+TGG - chr3_1:7837289-7837308 Msa0346940:intron 15.0%
!! CACAAATTATTTACAAATTT+GGG + chr3_1:7837597-7837616 None:intergenic 15.0%
!! ACACAAATTATTTACAAATT+TGG + chr3_1:7837598-7837617 None:intergenic 15.0%
!! ATGAGTTTATAAATAGATTT+GGG - chr3_1:7837795-7837814 Msa0346940:intron 15.0%
!!! ATTTTTTTATTCTTATCATC+GGG + chr3_1:7838825-7838844 None:intergenic 15.0%
!! TATTATATTTGATGTAACTT+CGG - chr3_1:7839196-7839215 Msa0346940:intron 15.0%
!!! CAATTTTTGAACAAAAATAA+GGG + chr3_1:7839403-7839422 None:intergenic 15.0%
!!! ATGTTTGAACTAATTTTTGT+GGG + chr3_1:7837639-7837658 None:intergenic 20.0%
!! AATCTATTTATAAACTCATC+TGG + chr3_1:7837794-7837813 None:intergenic 20.0%
!! GATGAGTTTATAAATAGATT+TGG - chr3_1:7837794-7837813 Msa0346940:CDS 20.0%
!!! TTTTTAGATTTCAAGTATGA+AGG - chr3_1:7837959-7837978 Msa0346940:intron 20.0%
!!! TTTTAGATTTCAAGTATGAA+GGG - chr3_1:7837960-7837979 Msa0346940:intron 20.0%
!!! AATGAAAATAAGGGTTTTTT+GGG + chr3_1:7838132-7838151 None:intergenic 20.0%
!!! ATGTTTGAGTTATATACTTA+CGG - chr3_1:7838218-7838237 Msa0346940:intron 20.0%
!!! TAAAAAGTATTTGATGCTAA+TGG - chr3_1:7838295-7838314 Msa0346940:CDS 20.0%
!! TATTGTATTTCGAATACAAA+AGG - chr3_1:7838362-7838381 Msa0346940:CDS 20.0%
!!! TTTTTTTATTCTTATCATCG+GGG + chr3_1:7838824-7838843 None:intergenic 20.0%
!! ATGAGTTTATAACAAGATTT+GGG - chr3_1:7838991-7839010 Msa0346940:intron 20.0%
!!! GCAATTTTTGAACAAAAATA+AGG + chr3_1:7839404-7839423 None:intergenic 20.0%
! TATGGCTTTCATAAAATGTT+TGG + chr3_1:7837054-7837073 None:intergenic 25.0%
!!! ACTATTTCTTTTGTATGATC+TGG + chr3_1:7837086-7837105 None:intergenic 25.0%
!! AATGCTGATACTACTTATTT+TGG - chr3_1:7837174-7837193 Msa0346940:CDS 25.0%
!! CATGTTTGAACTAATTTTTG+TGG + chr3_1:7837640-7837659 None:intergenic 25.0%
! ATCAATCAATCTTCAAAAGA+GGG + chr3_1:7837727-7837746 None:intergenic 25.0%
!! TTCATCAGTTTTACTACTAT+AGG + chr3_1:7837750-7837769 None:intergenic 25.0%
!!! GAATGAAAATAAGGGTTTTT+TGG + chr3_1:7838133-7838152 None:intergenic 25.0%
!! CGGATTTTGAATGAAAATAA+GGG + chr3_1:7838141-7838160 None:intergenic 25.0%
!! ACGGATTTTGAATGAAAATA+AGG + chr3_1:7838142-7838161 None:intergenic 25.0%
!!! GATTTCACTTTCTAGTTTTT+TGG - chr3_1:7838183-7838202 Msa0346940:intron 25.0%
! TCTCTTCAAAACATCAAATT+GGG - chr3_1:7838885-7838904 Msa0346940:CDS 25.0%
! CTATAATACCAAACTTCAAA+AGG + chr3_1:7838933-7838952 None:intergenic 25.0%
! GGTATTATAGTATAACCAAT+AGG - chr3_1:7838943-7838962 Msa0346940:CDS 25.0%
!! AATCTTGTTATAAACTCATC+TGG + chr3_1:7838990-7839009 None:intergenic 25.0%
! GATGAGTTTATAACAAGATT+TGG - chr3_1:7838990-7839009 Msa0346940:CDS 25.0%
! TTTGCAAAATACTATTCGTT+AGG - chr3_1:7839122-7839141 Msa0346940:intron 25.0%
! AAATACTATTCGTTAGGATA+TGG - chr3_1:7839128-7839147 Msa0346940:intron 25.0%
! TACATATCTTTCAAATACGA+AGG - chr3_1:7839155-7839174 Msa0346940:intron 25.0%
! AAAAAGCTCAAAATCAAGTT+TGG - chr3_1:7839326-7839345 Msa0346940:intron 25.0%
!!! GTTTTTTGGATTGAATTCAT+TGG + chr3_1:7839381-7839400 None:intergenic 25.0%
!!! GAACAAAAATAAGGGTTTTT+TGG + chr3_1:7839395-7839414 None:intergenic 25.0%
! ATTTGCATTGAGAATGATTT+GGG + chr3_1:7839637-7839656 None:intergenic 25.0%
! TATTTGCATTGAGAATGATT+TGG + chr3_1:7839638-7839657 None:intergenic 25.0%
! ATTCTCAATGCAAATAACAA+TGG - chr3_1:7839642-7839661 Msa0346940:intron 25.0%
! TTCTCAATGCAAATAACAAT+GGG - chr3_1:7839643-7839662 Msa0346940:intron 25.0%
! TTGTTGTCCTTTACAAATTT+CGG + chr3_1:7839673-7839692 None:intergenic 25.0%
! AAATGTTTGGAATCTTTCTC+CGG + chr3_1:7837041-7837060 None:intergenic 30.0%
! ATTTCTTTTGTATGATCTGG+AGG + chr3_1:7837083-7837102 None:intergenic 30.0%
TTAGGATATATTCTTCGAGT+CGG - chr3_1:7837528-7837547 Msa0346940:CDS 30.0%
! ACAGGTTTAGGATATATTCT+AGG - chr3_1:7837555-7837574 Msa0346940:CDS 30.0%
! CAGGTTTAGGATATATTCTA+GGG - chr3_1:7837556-7837575 Msa0346940:CDS 30.0%
! TTTGAACTAATTTTTGTGGG+AGG + chr3_1:7837636-7837655 None:intergenic 30.0%
TCAATCAATCTTCAAAAGAG+GGG + chr3_1:7837726-7837745 None:intergenic 30.0%
GATCAATCAATCTTCAAAAG+AGG + chr3_1:7837728-7837747 None:intergenic 30.0%
! ATGTTTTCCTTAGCAACAAT+TGG - chr3_1:7837897-7837916 Msa0346940:intron 30.0%
GAATACTATTCCATCAGTTA+CGG - chr3_1:7837932-7837951 Msa0346940:intron 30.0%
TAAAAAACAACCGTAACTGA+TGG + chr3_1:7837945-7837964 None:intergenic 30.0%
!!! TTAGTACTTGGAGTTTTGAA+TGG + chr3_1:7838040-7838059 None:intergenic 30.0%
TTCAAAACTCCAAGTACTAA+TGG - chr3_1:7838040-7838059 Msa0346940:intron 30.0%
TAATGGAGATCAAAGCATAA+AGG - chr3_1:7838057-7838076 Msa0346940:CDS 30.0%
AATGGAGATCAAAGCATAAA+GGG - chr3_1:7838058-7838077 Msa0346940:CDS 30.0%
! TTTTCATTCAAAATCCGTCA+AGG - chr3_1:7838144-7838163 Msa0346940:intron 30.0%
TTTCATTCAAAATCCGTCAA+GGG - chr3_1:7838145-7838164 Msa0346940:intron 30.0%
!! TACTTTTTAGCAAAACCAGA+AGG + chr3_1:7838284-7838303 None:intergenic 30.0%
TGGATTCAGTAAATTTGCAA+GGG - chr3_1:7838409-7838428 Msa0346940:CDS 30.0%
AAGGGAAAACAATCTATTAG+AGG - chr3_1:7838427-7838446 Msa0346940:CDS 30.0%
AGGGAAAACAATCTATTAGA+GGG - chr3_1:7838428-7838447 Msa0346940:CDS 30.0%
! TCTTTTAATGTCTGAACTGT+TGG - chr3_1:7838578-7838597 Msa0346940:intron 30.0%
AATGACAGAAAACGAAGTAA+GGG - chr3_1:7838675-7838694 Msa0346940:CDS 30.0%
!! GGAATCGAAACATTTTAAGA+AGG - chr3_1:7838696-7838715 Msa0346940:CDS 30.0%
ACTATCTCTTTGTCTTGAAT+GGG + chr3_1:7838736-7838755 None:intergenic 30.0%
TACTATCTCTTTGTCTTGAA+TGG + chr3_1:7838737-7838756 None:intergenic 30.0%
ACAGTAACTCAAAACAGAAA+GGG + chr3_1:7838765-7838784 None:intergenic 30.0%
AACAGTAACTCAAAACAGAA+AGG + chr3_1:7838766-7838785 None:intergenic 30.0%
GTCTCTTCAAAACATCAAAT+TGG - chr3_1:7838884-7838903 Msa0346940:CDS 30.0%
CTCTTCAAAACATCAAATTG+GGG - chr3_1:7838886-7838905 Msa0346940:CDS 30.0%
AATACCAAACTTCAAAAGGA+GGG + chr3_1:7838929-7838948 None:intergenic 30.0%
TAATACCAAACTTCAAAAGG+AGG + chr3_1:7838930-7838949 None:intergenic 30.0%
! ACATTTTCTTTTGCAACGAA+TGG - chr3_1:7839093-7839112 Msa0346940:intron 30.0%
! AATGCTTTCCTTGAGAATTT+TGG + chr3_1:7839588-7839607 None:intergenic 30.0%
! AAAATTCTCAAGGAAAGCAT+TGG - chr3_1:7839587-7839606 Msa0346940:intron 30.0%
!! ACTCTAACTCTGAAACTTTG+AGG - chr3_1:7837144-7837163 Msa0346940:CDS 35.0%
! GATTGATTGAGCATGTGTTT+TGG - chr3_1:7837345-7837364 Msa0346940:intron 35.0%
!! GAGCATGTGTTTTGGATTAA+TGG - chr3_1:7837353-7837372 Msa0346940:intron 35.0%
ATGCAAAAAACTTCGAGTCA+GGG - chr3_1:7837498-7837517 Msa0346940:CDS 35.0%
TAGGATATATTCTTCGAGTC+GGG - chr3_1:7837529-7837548 Msa0346940:CDS 35.0%
GCTATCATTATTGTTCCTGA+TGG - chr3_1:7837836-7837855 Msa0346940:intron 35.0%
CTTTGATCTCCATTAGTACT+TGG + chr3_1:7838052-7838071 None:intergenic 35.0%
!!! GTTTTTTGGGTTGAATTCAC+TGG + chr3_1:7838119-7838138 None:intergenic 35.0%
GTGGATTCAGTAAATTTGCA+AGG - chr3_1:7838408-7838427 Msa0346940:CDS 35.0%
ATGTGTTTGAGCTGATTAAG+AGG - chr3_1:7838459-7838478 Msa0346940:CDS 35.0%
! TGAACTGTTGGTGAACTTAA+TGG - chr3_1:7838590-7838609 Msa0346940:intron 35.0%
!! TTCGTTTTCTGTCATTGACT+GGG + chr3_1:7838671-7838690 None:intergenic 35.0%
CAATGACAGAAAACGAAGTA+AGG - chr3_1:7838674-7838693 Msa0346940:CDS 35.0%
!!! TTGGTACTTAGAGTTTTGAG+TGG + chr3_1:7839236-7839255 None:intergenic 35.0%
CTCAAAACTCTAAGTACCAA+TGG - chr3_1:7839236-7839255 Msa0346940:intron 35.0%
TACTCCTATGAAAAGTTCCA+GGG - chr3_1:7839280-7839299 Msa0346940:intron 35.0%
!! ACATGCTTTTAAAAGTGCAG+AGG - chr3_1:7839349-7839368 Msa0346940:intron 35.0%
AATTGCTAAGCGAAATCTTG+TGG - chr3_1:7839418-7839437 Msa0346940:intron 35.0%
GGGATTTCCGAAATTTGTAA+AGG - chr3_1:7839663-7839682 Msa0346940:intron 35.0%
!! TTGTGTGTTTGAGTTGATCA+AGG - chr3_1:7839711-7839730 Msa0346940:CDS 35.0%
! ATTGTGACTTTTAGCACAAC+CGG + chr3_1:7839742-7839761 None:intergenic 35.0%
AAAAGTCACAATGTTTCGTG+CGG - chr3_1:7839750-7839769 Msa0346940:CDS 35.0%
! TCTTTTGTATGATCTGGAGG+AGG + chr3_1:7837080-7837099 None:intergenic 40.0%
TTGAGCCTACAGATCATGTT+TGG - chr3_1:7837475-7837494 Msa0346940:CDS 40.0%
TGCATCCAAACATGATCTGT+AGG + chr3_1:7837483-7837502 None:intergenic 40.0%
GATGCAAAAAACTTCGAGTC+AGG - chr3_1:7837497-7837516 Msa0346940:CDS 40.0%
AGGATATATTCTTCGAGTCG+GGG - chr3_1:7837530-7837549 Msa0346940:CDS 40.0%
ACTGTTGCCAATTGTTGCTA+AGG + chr3_1:7837907-7837926 None:intergenic 40.0%
!!! ACTCTTTTGGGATCAGAGTT+AGG + chr3_1:7838085-7838104 None:intergenic 40.0%
! GCAGCACAATTCACTCTTTT+GGG + chr3_1:7838097-7838116 None:intergenic 40.0%
AGGAACGTACTACAGAATGA+AGG + chr3_1:7838264-7838283 None:intergenic 40.0%
ATTCTGTAGTACGTTCCTTC+TGG - chr3_1:7838266-7838285 Msa0346940:intron 40.0%
!!! TGAGAGTTTTGGAGCATGAA+CGG + chr3_1:7838323-7838342 None:intergenic 40.0%
TTCATGCTCCAAAACTCTCA+AGG - chr3_1:7838323-7838342 Msa0346940:CDS 40.0%
! ACTGCTTTCCTTGAGAGTTT+TGG + chr3_1:7838334-7838353 None:intergenic 40.0%
AAAACTCTCAAGGAAAGCAG+TGG - chr3_1:7838333-7838352 Msa0346940:CDS 40.0%
AAACTCTCAAGGAAAGCAGT+GGG - chr3_1:7838334-7838353 Msa0346940:CDS 40.0%
TCATCAATGCGAATAACGAG+TGG - chr3_1:7838389-7838408 Msa0346940:CDS 40.0%
ACAAGTTGCAGCAATTTGCA+CGG - chr3_1:7838499-7838518 Msa0346940:CDS 40.0%
! CTTCGTTTTCTGTCATTGAC+TGG + chr3_1:7838672-7838691 None:intergenic 40.0%
TCTTTGTCTTGAATGGGCAA+GGG + chr3_1:7838730-7838749 None:intergenic 40.0%
!!! GTTACCCTCCTTTTGAAGTT+TGG - chr3_1:7838922-7838941 Msa0346940:CDS 40.0%
! ATTTTCCAATCACGACCATC+AGG + chr3_1:7839050-7839069 None:intergenic 40.0%
! CTGTGTGTTTGTTTCTCCAT+TGG + chr3_1:7839255-7839274 None:intergenic 40.0%
! CTGGAACTTTTCATAGGAGT+AGG + chr3_1:7839281-7839300 None:intergenic 40.0%
CTACTCCTATGAAAAGTTCC+AGG - chr3_1:7839279-7839298 Msa0346940:intron 40.0%
! TCAACCCTGGAACTTTTCAT+AGG + chr3_1:7839287-7839306 None:intergenic 40.0%
!!! TGAGAATTTTGGAGTGCGAT+TGG + chr3_1:7839577-7839596 None:intergenic 40.0%
ATCGCACTCCAAAATTCTCA+AGG - chr3_1:7839577-7839596 Msa0346940:intron 40.0%
AAGGACAACAATCTGACACA+TGG - chr3_1:7839682-7839701 Msa0346940:intron 40.0%
ATGATCTGGAGGAGGAAGTA+TGG + chr3_1:7837072-7837091 None:intergenic 45.0%
!!! GTGGGAGGCAACATTGATTT+TGG + chr3_1:7837621-7837640 None:intergenic 45.0%
TTGTTCCTGATGGTCGTGAA+TGG - chr3_1:7837846-7837865 Msa0346940:intron 45.0%
TGTTCCTGATGGTCGTGAAT+GGG - chr3_1:7837847-7837866 Msa0346940:intron 45.0%
ATTTCCCATTCACGACCATC+AGG + chr3_1:7837854-7837873 None:intergenic 45.0%
TGATGGTCGTGAATGGGAAA+TGG - chr3_1:7837853-7837872 Msa0346940:intron 45.0%
GATGGTCGTGAATGGGAAAT+GGG - chr3_1:7837854-7837873 Msa0346940:intron 45.0%
GAAATGGGACTGACGAAATG+TGG - chr3_1:7837869-7837888 Msa0346940:intron 45.0%
! GGCAGCACAATTCACTCTTT+TGG + chr3_1:7838098-7838117 None:intergenic 45.0%
!!! ATCCGTCAAGGGCATTTTTG+CGG - chr3_1:7838156-7838175 Msa0346940:intron 45.0%
CGTACTACAGAATGAAGGAG+AGG + chr3_1:7838259-7838278 None:intergenic 45.0%
GCAACTTGTAGCACAACAAC+AGG + chr3_1:7838488-7838507 None:intergenic 45.0%
TTGAATGGGCAAGGGAAGTA+TGG + chr3_1:7838722-7838741 None:intergenic 45.0%
CTCTTTGTCTTGAATGGGCA+AGG + chr3_1:7838731-7838750 None:intergenic 45.0%
CTGCAGTGATAACAGCCTAT+TGG + chr3_1:7838961-7838980 None:intergenic 45.0%
GCTACAGTTACTGTTCCTGA+TGG - chr3_1:7839032-7839051 Msa0346940:intron 45.0%
AGTTCCAGGGTTGAAACAAG+TGG - chr3_1:7839293-7839312 Msa0346940:intron 45.0%
TGGAGTGCGATTGGAACATT+TGG + chr3_1:7839568-7839587 None:intergenic 45.0%
!! TGAGTTGATCAAGGAGAAGC+CGG - chr3_1:7839720-7839739 Msa0346940:CDS 45.0%
ATGTTTCGTGCGGTTGACTA+CGG - chr3_1:7839760-7839779 Msa0346940:CDS 45.0%
!! AAAAATAAATATAAAACAAT+AGG + chr3_1:7837221-7837240 None:intergenic 5.0%
TTGGAATCTTTCTCCGGTGC+CGG + chr3_1:7837035-7837054 None:intergenic 50.0%
TCGAGTCAGGGCTACAAGTT+AGG - chr3_1:7837510-7837529 Msa0346940:CDS 50.0%
CACCGCAAAAATGCCCTTGA+CGG + chr3_1:7838161-7838180 None:intergenic 50.0%
!!! TCAAGGGCATTTTTGCGGTG+AGG - chr3_1:7838161-7838180 Msa0346940:intron 50.0%
ATTGCAATGCAGCCTCCATG+CGG - chr3_1:7838637-7838656 Msa0346940:CDS 50.0%
CTGTTCCTGATGGTCGTGAT+TGG - chr3_1:7839042-7839061 Msa0346940:intron 50.0%
! ACTGCCACTTGTTTCAACCC+TGG + chr3_1:7839300-7839319 None:intergenic 50.0%
GCGACGGAACACATCTTTGC+CGG + chr3_1:7837007-7837026 None:intergenic 55.0%
ATTCTTCGAGTCGGGGCAAC+AGG - chr3_1:7837537-7837556 Msa0346940:CDS 55.0%
ATGTGTTCCGTCGCCGTCAC+CGG - chr3_1:7837013-7837032 Msa0346940:CDS 60.0%
!! TCTTTCTCCGGTGCCGGTGA+CGG + chr3_1:7837029-7837048 None:intergenic 60.0%
CGAGTCGGGGCAACAGGTTT+AGG - chr3_1:7837543-7837562 Msa0346940:CDS 60.0%
CAATGCAGCCTCCATGCGGA+AGG - chr3_1:7838641-7838660 Msa0346940:CDS 60.0%
TGGGCACACCTTCCGCATGG+AGG + chr3_1:7838652-7838671 None:intergenic 65.0%
GACTGGGCACACCTTCCGCA+TGG + chr3_1:7838655-7838674 None:intergenic 65.0%
TCCGTCGCCGTCACCGGCAC+CGG - chr3_1:7837019-7837038 Msa0346940:CDS 75.0%
!! TCCGGTGCCGGTGACGGCGA+CGG + chr3_1:7837023-7837042 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 7836993 7839801 7836993 ID=Msa0346940;Name=Msa0346940
chr3_1 mRNA 7836993 7839801 7836993 ID=Msa0346940-mRNA-1;Parent=Msa0346940;Name=Msa0346940-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.4|0.16|1|1|1|6|0|528
chr3_1 exon 7839691 7839801 7839691 ID=Msa0346940-mRNA-1:exon:2237;Parent=Msa0346940-mRNA-1
chr3_1 exon 7838617 7839009 7838617 ID=Msa0346940-mRNA-1:exon:2236;Parent=Msa0346940-mRNA-1
chr3_1 exon 7838274 7838519 7838274 ID=Msa0346940-mRNA-1:exon:2235;Parent=Msa0346940-mRNA-1
chr3_1 exon 7838041 7838145 7838041 ID=Msa0346940-mRNA-1:exon:2234;Parent=Msa0346940-mRNA-1
chr3_1 exon 7837355 7837813 7837355 ID=Msa0346940-mRNA-1:exon:2233;Parent=Msa0346940-mRNA-1
chr3_1 exon 7836993 7837265 7836993 ID=Msa0346940-mRNA-1:exon:2232;Parent=Msa0346940-mRNA-1
chr3_1 CDS 7839691 7839801 7839691 ID=Msa0346940-mRNA-1:cds;Parent=Msa0346940-mRNA-1
chr3_1 CDS 7838617 7839009 7838617 ID=Msa0346940-mRNA-1:cds;Parent=Msa0346940-mRNA-1
chr3_1 CDS 7838274 7838519 7838274 ID=Msa0346940-mRNA-1:cds;Parent=Msa0346940-mRNA-1
chr3_1 CDS 7838041 7838145 7838041 ID=Msa0346940-mRNA-1:cds;Parent=Msa0346940-mRNA-1
chr3_1 CDS 7837355 7837813 7837355 ID=Msa0346940-mRNA-1:cds;Parent=Msa0346940-mRNA-1
chr3_1 CDS 7836993 7837265 7836993 ID=Msa0346940-mRNA-1:cds;Parent=Msa0346940-mRNA-1
Gene Sequence

>Msa0346940

ATGAAGACTCACCGGCAAAGATGTGTTCCGTCGCCGTCACCGGCACCGGAGAAAGATTCCAAACATTTTATGAAAGCCATACTTCCTCCTCCAGATCATACAAAAGAAATACAAATTCCAGATGAGTTTATAAATAGATTTGGGAATGAACTCAAGAATGTTGCTATCATTATTGTTCCTGATGGTCGTGAATGGGAAATGGGACTGACGAAATGTGGCGAGCATGTTTTCCTTAGCAACAATTGGCAACAGTTTGCAGAATACTATTCCATCAGTTACGGTTGTTTTTTAGATTTCAAGTATGAAGGGAATTCAAAGTTTGATGTTGTTATATATGATACAACTTCTGTTGAGATTTCTTATCCATTCAAAACTCCAAGTACTAATGGAGATCAAAGCATAAAGGGTCCTAACTCTGATCCCAAAAGAGTGAATTGTGCTGCCAGTGAATTCAACCCAAAAAACCCTTATTTTCATTCAAAATCCGTCAAGGGCATTTTTGCGTACGTTCCTTCTGGTTTTGCTAAAAAGTATTTGATGCTAATGGTTCCGTTCATGCTCCAAAACTCTCAAGGAAAGCAGTGGGAAGTTTATTGTATTTCGAATACAAAAGGAAACTCATCAATGCGAATAACGAGTGGATTCAGTAAATTTGCAAGGGAAAACAATCTATTAGAGGGAGTTACATATGTGTTTGAGCTGATTAAGAGGAAGCCTGTTGTTGTGCTACAAGTTGCAGCAATTTGCACGCCTCCATGCGGAAGGTGTGCCCAGTCAATGACAGAAAACGAAGTAAGGGAATCGAAACATTTTAAGAAGGCCATACTTCCCTTGCCCATTCAAGACAAAGAGATAAAAATTCCAGATGAGTTTATAACAAGATTTGGGAACGAACTCAAGAATGTTGCTACAGTTACTGTTCCTGATGGTCGTGATTGGAAAATGAGATTGAAGAAACGCGACAATGACATTTTCTTTTGCAACGAATGGCAAGAGTTTGCAAAATACTATTCGTTAGGATATGGTTGCTACATATCTTTCAAATACGAAGGAAATTCAAAGTTTAGTGTTATTATATTTGATGTAACTTCGGTTGAGATTTGCTATCCACTCAAAACTCTAAGTACCAATGGAGAAACAAACACACAGTGTCCTACTCCTATGAAAAGTTCCAGGGTTGAAACAAGTGGCAGTCAAGTGAAAAAGCTCAAAATCAAGTTTGGACATGCTTTTAAAAGTGCAGAGGTTGCTGCCAATGAATTCAATCCAAAAAACCCTTATTTTTGTTCAAAAATTGCTAAGCGAAATCTTGTGAATGTTACTGCTAAATTTGCTCAAAAGTATCTAATGCCAAATGTTCCAATCGCACTCCAAAATTCTCAAGGAAAGCATTGGAAAGTTCATTGTATATTGTATAATCCCAAATCATTCTCAATGCAAATAACAATGGGATTTCCGAAATTTGTAAAGGACAACAATCTGACACATGGAGATTATTGTGTGTTTGAGTTGATCAAGGAGAAGCCGGTTGTGCTAAAAGTCACAATGTTTCGTGCGGTTGACTACGGCAAATCCTCTCTACTTTGA
Protein sequence

>Msa0346940

MKTHRQRCVPSPSPAPEKDSKHFMKAILPPPDHTKEIQIPDEFINRFGNELKNVAIIIVPDGREWEMGLTKCGEHVFLSNNWQQFAEYYSISYGCFLDFKYEGNSKFDVVIYDTTSVEISYPFKTPSTNGDQSIKGPNSDPKRVNCAASEFNPKNPYFHSKSVKGIFAYVPSGFAKKYLMLMVPFMLQNSQGKQWEVYCISNTKGNSSMRITSGFSKFARENNLLEGVTYVFELIKRKPVVVLQVAAICTPPCGRCAQSMTENEVRESKHFKKAILPLPIQDKEIKIPDEFITRFGNELKNVATVTVPDGRDWKMRLKKRDNDIFFCNEWQEFAKYYSLGYGCYISFKYEGNSKFSVIIFDVTSVEICYPLKTLSTNGETNTQCPTPMKSSRVETSGSQVKKLKIKFGHAFKSAEVAANEFNPKNPYFCSKIAKRNLVNVTAKFAQKYLMPNVPIALQNSQGKHWKVHCILYNPKSFSMQITMGFPKFVKDNNLTHGDYCVFELIKEKPVVLKVTMFRAVDYGKSSLL*