AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0347430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347430 MtrunA17_Chr3g0079691 97.606 710 9 2 1 708 1 704 0.0 1424
Msa0347430 MtrunA17_Chr3g0101131 42.886 492 201 14 109 579 60 492 3.77e-104 330
Msa0347430 MtrunA17_Chr7g0249311 56.169 308 123 5 266 570 163 461 6.05e-100 321
Msa0347430 MtrunA17_Chr7g0249311 52.778 72 33 1 286 356 392 463 2.77e-14 76.6
Msa0347430 MtrunA17_Chr5g0432161 42.857 476 175 14 112 565 85 485 5.79e-89 290
Msa0347430 MtrunA17_Chr5g0445311 41.469 463 194 11 109 567 41 430 1.15e-88 288
Msa0347430 MtrunA17_Chr5g0445311 48.148 81 39 2 501 581 200 277 9.51e-14 74.7
Msa0347430 MtrunA17_Chr7g0218081 51.495 301 104 8 284 580 226 488 2.54e-85 278
Msa0347430 MtrunA17_Chr7g0249301 48.225 338 106 9 266 563 46 354 4.55e-84 270
Msa0347430 MtrunA17_Chr7g0249301 46.078 102 43 5 500 592 61 159 6.82e-15 77.0
Msa0347430 MtrunA17_Chr5g0418191 49.521 313 102 9 268 577 136 395 1.11e-82 268
Msa0347430 MtrunA17_Chr5g0418191 47.525 101 42 5 501 593 151 248 1.13e-16 83.2
Msa0347430 MtrunA17_Chr5g0418191 41.129 124 52 4 241 344 257 379 1.46e-14 76.6
Msa0347430 MtrunA17_Chr7g0243891 41.113 467 190 13 112 571 56 444 1.49e-81 269
Msa0347430 MtrunA17_Chr7g0243891 48.276 87 38 3 501 583 216 299 6.11e-16 81.6
Msa0347430 MtrunA17_Chr7g0263531 46.763 278 103 5 284 560 187 420 1.48e-69 234
Msa0347430 MtrunA17_Chr4g0004911 67.717 127 34 3 442 563 274 398 3.18e-47 174
Msa0347430 MtrunA17_Chr4g0004911 33.463 257 116 7 102 349 38 248 2.56e-25 110
Msa0347430 MtrunA17_Chr4g0004911 47.778 90 38 2 473 562 165 245 6.93e-17 84.3
Msa0347430 MtrunA17_Chr4g0004911 55.000 60 26 1 286 344 336 395 4.42e-13 72.4
Msa0347430 MtrunA17_Chr3g0106491 60.870 138 51 1 431 565 292 429 1.21e-45 170
Msa0347430 MtrunA17_Chr3g0106491 39.419 241 106 5 110 349 60 261 1.61e-36 144
Msa0347430 MtrunA17_Chr3g0106491 54.545 77 26 3 492 562 185 258 3.86e-15 79.0
Msa0347430 MtrunA17_Chr3g0106491 56.452 62 26 1 286 346 365 426 3.91e-14 75.5
Msa0347430 MtrunA17_Chr4g0042831 56.429 140 51 2 439 577 224 354 1.20e-41 156
Msa0347430 MtrunA17_Chr4g0042831 58.427 89 34 2 268 355 129 215 3.90e-24 105
Msa0347430 MtrunA17_Chr4g0042831 60.000 60 23 1 286 344 278 337 2.67e-14 75.5
Msa0347430 MtrunA17_Chr4g0042831 53.425 73 32 1 501 573 145 215 4.37e-14 74.7
Msa0347430 MtrunA17_Chr1g0188941 63.095 84 31 0 477 560 27 110 1.86e-34 127
Msa0347430 MtrunA17_Chr1g0188941 51.613 62 29 1 286 346 51 112 2.85e-15 72.4
Msa0347430 MtrunA17_Chr8g0335811 65.789 76 26 0 482 557 135 210 3.41e-30 119
Msa0347430 MtrunA17_Chr8g0335811 61.404 57 21 1 286 341 154 210 9.92e-17 80.1
Msa0347430 MtrunA17_Chr5g0447701 57.000 100 42 1 465 563 215 314 2.47e-29 120
Msa0347430 MtrunA17_Chr5g0447701 61.667 60 23 0 285 344 91 150 6.56e-20 92.4
Msa0347430 MtrunA17_Chr5g0447701 45.455 99 41 4 252 344 220 311 2.60e-14 75.5
Msa0347430 MtrunA17_Chr5g0447701 50.000 64 31 1 499 562 90 152 1.71e-11 66.6
Msa0347430 MtrunA17_Chr7g0270191 60.465 86 34 0 485 570 129 214 2.60e-28 115
Msa0347430 MtrunA17_Chr7g0270191 57.353 68 28 1 286 352 145 212 1.61e-17 84.0
Msa0347430 MtrunA17_Chr2g0294231 65.385 78 27 0 485 562 187 264 1.05e-27 115
Msa0347430 MtrunA17_Chr2g0294231 57.812 64 26 1 286 348 203 266 4.32e-17 84.0
Msa0347430 MtrunA17_Chr3g0129361 62.162 74 28 0 484 557 127 200 1.10e-27 111
Msa0347430 MtrunA17_Chr3g0129361 56.140 57 24 1 286 341 144 200 1.28e-14 73.6
Msa0347430 MtrunA17_Chr4g0051881 64.474 76 27 0 487 562 164 239 1.50e-27 114
Msa0347430 MtrunA17_Chr4g0051881 64.062 64 22 1 286 348 178 241 8.28e-19 88.6
Msa0347430 MtrunA17_Chr5g0418781 64.474 76 27 0 482 557 105 180 3.11e-27 112
Msa0347430 MtrunA17_Chr5g0418781 64.912 57 19 1 286 341 124 180 4.59e-17 82.0
Msa0347430 MtrunA17_Chr1g0194481 59.756 82 33 0 485 566 142 223 1.48e-26 111
Msa0347430 MtrunA17_Chr1g0194481 44.231 104 48 2 286 388 158 252 5.32e-19 89.0
Msa0347430 MtrunA17_Chr4g0074001 50.485 103 50 1 462 563 319 421 2.36e-26 113
Msa0347430 MtrunA17_Chr4g0074001 50.667 75 32 2 278 351 355 425 3.34e-16 82.4
Msa0347430 MtrunA17_Chr4g0074001 51.899 79 35 2 278 355 178 254 7.37e-16 81.3
Msa0347430 MtrunA17_Chr8g0383351 61.333 75 28 1 484 557 142 216 3.77e-26 107
Msa0347430 MtrunA17_Chr8g0383351 56.140 57 24 1 286 341 160 216 8.48e-15 74.7
Msa0347430 MtrunA17_Chr5g0443131 60.526 76 30 0 487 562 143 218 6.31e-26 108
Msa0347430 MtrunA17_Chr5g0443131 59.375 64 25 1 286 348 157 220 6.44e-17 82.4
Msa0347430 MtrunA17_Chr8g0383251 50.000 88 44 0 488 575 95 182 2.32e-25 103
Msa0347430 MtrunA17_Chr8g0383251 48.684 76 36 2 286 360 108 181 2.41e-12 66.2
Msa0347430 MtrunA17_Chr1g0150801 56.627 83 34 1 477 557 76 158 2.45e-25 102
Msa0347430 MtrunA17_Chr1g0150801 51.724 58 27 1 286 342 102 159 8.45e-14 69.7
Msa0347430 MtrunA17_Chr7g0224801 64.706 68 24 0 492 559 84 151 6.65e-25 102
Msa0347430 MtrunA17_Chr7g0224801 53.448 58 26 1 286 342 93 150 1.39e-15 75.1
Msa0347430 MtrunA17_Chr4g0075201 48.039 102 52 1 462 562 228 329 3.35e-24 107
Msa0347430 MtrunA17_Chr4g0075201 41.935 93 52 2 255 345 236 328 1.66e-14 76.6
Msa0347430 MtrunA17_Chr7g0248721 48.598 107 48 2 451 557 97 196 1.36e-23 99.8
Msa0347430 MtrunA17_Chr7g0248721 60.345 58 21 2 286 342 141 197 1.36e-15 76.6
Msa0347430 MtrunA17_Chr8g0386241 49.495 99 48 1 467 565 71 167 1.58e-23 98.2
Msa0347430 MtrunA17_Chr8g0386241 35.652 115 64 3 231 342 53 160 1.05e-14 72.8
Msa0347430 MtrunA17_Chr2g0288871 38.411 151 86 2 417 560 215 365 2.01e-23 105
Msa0347430 MtrunA17_Chr2g0288871 44.086 93 50 2 255 345 274 366 2.09e-16 83.2
Msa0347430 MtrunA17_Chr3g0129321 48.387 93 48 0 487 579 104 196 2.34e-23 98.6
Msa0347430 MtrunA17_Chr3g0129321 55.000 60 26 1 286 344 118 177 2.62e-14 72.4
Msa0347430 MtrunA17_Chr7g0270831 50.000 92 44 2 484 573 199 290 2.73e-23 103
Msa0347430 MtrunA17_Chr7g0270831 54.098 61 26 2 287 345 217 277 5.60e-14 74.7
Msa0347430 MtrunA17_Chr1g0189391 42.143 140 71 5 445 576 36 173 3.94e-23 101
Msa0347430 MtrunA17_Chr2g0322391 53.571 84 38 1 480 562 328 411 9.97e-23 103
Msa0347430 MtrunA17_Chr2g0322391 50.820 61 28 2 287 345 350 410 4.18e-12 69.3
Msa0347430 MtrunA17_Chr4g0068541 52.381 84 40 0 485 568 192 275 1.18e-22 101
Msa0347430 MtrunA17_Chr4g0068541 52.174 69 32 1 286 353 208 276 1.23e-15 79.7
Msa0347430 MtrunA17_Chr3g0099641 52.564 78 36 1 484 560 234 311 2.50e-22 100
Msa0347430 MtrunA17_Chr3g0099641 48.438 64 31 2 287 348 252 315 1.53e-13 73.6
Msa0347430 MtrunA17_Chr4g0051181 55.128 78 34 1 485 561 227 304 3.27e-22 100
Msa0347430 MtrunA17_Chr4g0051181 51.667 60 27 2 287 344 244 303 4.18e-12 69.3
Msa0347430 MtrunA17_Chr2g0302391 30.894 246 136 9 368 587 62 299 1.76e-21 97.8
Msa0347430 MtrunA17_Chr2g0302391 39.362 94 54 3 257 348 183 275 4.00e-13 72.0
Msa0347430 MtrunA17_Chr4g0060271 51.948 77 36 1 485 560 239 315 2.73e-21 98.6
Msa0347430 MtrunA17_Chr4g0060271 40.000 100 55 4 250 344 216 315 1.44e-12 70.9
Msa0347430 MtrunA17_Chr4g0025061 48.315 89 45 1 475 562 334 422 3.90e-21 98.2
Msa0347430 MtrunA17_Chr4g0025061 43.750 64 34 2 287 348 361 424 6.49e-11 65.5
Msa0347430 MtrunA17_Chr6g0485431 38.732 142 75 3 431 560 73 214 4.35e-21 95.9
Msa0347430 MtrunA17_Chr6g0485431 46.154 65 33 2 287 349 155 219 1.86e-11 66.2
Msa0347430 MtrunA17_Chr5g0432071 60.938 64 25 0 286 349 104 167 4.79e-21 92.0
Msa0347430 MtrunA17_Chr5g0432071 53.226 62 28 1 501 562 104 164 5.36e-14 71.6
Msa0347430 MtrunA17_Chr4g0053281 48.864 88 41 2 482 568 250 334 1.72e-20 93.6
Msa0347430 MtrunA17_Chr4g0053281 50.877 57 26 2 287 341 267 323 8.79e-12 67.0
Msa0347430 MtrunA17_Chr1g0147881 52.439 82 38 1 482 562 243 324 4.39e-20 92.4
Msa0347430 MtrunA17_Chr1g0147881 54.386 57 24 2 287 341 263 319 4.18e-12 68.2
Msa0347430 MtrunA17_Chr7g0216891 45.263 95 47 2 472 565 194 284 5.54e-20 94.4
Msa0347430 MtrunA17_Chr7g0216891 47.826 69 33 3 277 342 209 277 1.93e-11 67.4
Msa0347430 MtrunA17_Chr5g0447711 45.161 93 48 1 478 567 204 296 7.24e-20 91.3
Msa0347430 MtrunA17_Chr5g0447711 50.847 59 29 0 286 344 83 141 4.22e-14 73.9
Msa0347430 MtrunA17_Chr4g0025051 52.632 76 35 1 488 562 322 397 2.16e-19 92.8
Msa0347430 MtrunA17_Chr7g0238921 63.158 57 21 0 501 557 124 180 3.69e-19 89.4
Msa0347430 MtrunA17_Chr7g0238921 51.429 70 33 1 277 345 115 184 6.51e-14 73.6
Msa0347430 MtrunA17_Chr5g0401821 47.368 95 39 2 466 559 174 258 5.22e-19 87.8
Msa0347430 MtrunA17_Chr5g0401821 34.862 109 66 3 238 341 148 256 4.28e-11 64.3
Msa0347430 MtrunA17_Chr2g0333851 42.553 94 38 2 484 561 137 230 2.29e-18 86.7
Msa0347430 MtrunA17_Chr2g0333851 49.180 61 29 2 286 344 169 229 4.86e-12 67.8
Msa0347430 MtrunA17_Chr4g0071521 48.387 93 37 3 466 557 220 302 2.86e-18 86.7
Msa0347430 MtrunA17_Chr4g0071521 40.789 76 42 3 268 341 228 302 1.01e-11 66.6
Msa0347430 MtrunA17_Chr3g0136961 52.055 73 32 2 488 557 123 195 3.31e-18 85.9
Msa0347430 MtrunA17_Chr3g0136961 50.000 62 29 2 282 341 134 195 2.75e-12 68.2
Msa0347430 MtrunA17_Chr2g0284321 53.030 66 29 2 283 346 32 97 7.31e-17 80.1
Msa0347430 MtrunA17_Chr2g0284321 46.667 75 38 2 502 574 36 110 4.73e-14 72.0
Msa0347430 MtrunA17_Chr1g0150271 46.575 73 38 1 489 560 89 161 1.09e-16 80.5
Msa0347430 MtrunA17_Chr1g0150271 41.333 75 35 3 272 344 94 161 7.90e-11 63.2
Msa0347430 MtrunA17_Chr4g0001361 53.968 63 28 1 499 560 160 222 1.52e-16 81.3
Msa0347430 MtrunA17_Chr4g0001361 50.000 66 31 2 282 345 158 223 3.59e-14 74.3
Msa0347430 MtrunA17_Chr1g0184691 49.351 77 38 1 482 557 274 350 1.73e-16 81.6
Msa0347430 MtrunA17_Chr1g0184691 52.459 61 27 2 287 345 294 354 3.85e-12 68.6
Msa0347430 MtrunA17_Chr4g0024391 37.838 111 66 2 455 562 181 291 3.27e-16 82.0
Msa0347430 MtrunA17_Chr7g0270051 53.030 66 30 1 502 566 54 119 5.40e-16 78.6
Msa0347430 MtrunA17_Chr7g0270051 53.846 65 27 3 282 344 50 113 1.21e-13 71.6
Msa0347430 MtrunA17_Chr6g0468181 53.521 71 33 0 302 372 18 88 7.40e-16 74.3
Msa0347430 MtrunA17_Chr2g0289181 50.000 72 34 2 286 355 14 85 1.06e-15 77.0
Msa0347430 MtrunA17_Chr2g0289181 45.946 74 39 1 490 562 3 76 1.27e-14 73.9
Msa0347430 MtrunA17_Chr1g0150281 44.578 83 40 3 481 557 115 197 1.28e-15 78.2
Msa0347430 MtrunA17_Chr1g0150281 37.383 107 61 4 287 389 141 245 9.46e-12 66.6
Msa0347430 MtrunA17_Chr8g0379461 42.466 73 41 1 502 573 77 149 1.38e-15 77.0
Msa0347430 MtrunA17_Chr8g0379461 36.522 115 58 4 275 381 65 172 7.17e-15 75.1
Msa0347430 MtrunA17_Chr7g0228941 46.479 71 37 1 488 557 39 109 2.09e-15 73.2
Msa0347430 MtrunA17_Chr7g0228941 47.368 57 28 2 287 341 53 109 1.22e-12 65.5
Msa0347430 MtrunA17_Chr8g0387501 46.914 81 38 4 277 355 121 198 2.42e-15 77.0
Msa0347430 MtrunA17_Chr8g0387501 49.254 67 33 1 500 565 128 194 7.63e-15 75.5
Msa0347430 MtrunA17_Chr8g0387981 34.375 160 89 5 192 339 34 189 2.98e-15 78.2
Msa0347430 MtrunA17_Chr3g0139021 40.196 102 55 2 458 558 276 372 3.07e-15 78.6
Msa0347430 MtrunA17_Chr3g0139021 45.902 61 31 2 287 345 315 375 6.26e-11 65.1
Msa0347430 MtrunA17_Chr1g0202461 42.353 85 47 2 482 565 243 326 8.67e-15 77.0
Msa0347430 MtrunA17_Chr1g0202461 51.613 62 28 2 285 344 260 321 5.22e-13 71.2
Msa0347430 MtrunA17_Chr2g0319961 48.438 64 32 1 502 564 81 144 2.25e-14 73.9
Msa0347430 MtrunA17_Chr2g0319961 38.889 108 53 5 251 346 36 142 6.06e-12 66.6
Msa0347430 MtrunA17_Chr1g0188961 65.957 47 16 0 521 567 3 49 3.40e-14 67.8
Msa0347430 MtrunA17_Chr5g0419241 45.588 68 37 0 462 529 38 105 3.52e-14 69.3
Msa0347430 MtrunA17_Chr8g0348311 50.769 65 31 1 502 565 156 220 4.24e-14 74.3
Msa0347430 MtrunA17_Chr8g0348311 50.000 62 29 2 285 344 154 215 5.73e-11 64.7
Msa0347430 MtrunA17_Chr2g0293481 46.575 73 37 2 494 565 261 332 5.31e-14 75.1
Msa0347430 MtrunA17_Chr2g0293481 40.217 92 47 4 287 372 268 357 6.14e-12 68.6
Msa0347430 MtrunA17_Chr7g0248691 49.231 65 32 1 502 565 155 219 7.70e-14 73.2
Msa0347430 MtrunA17_Chr7g0248691 50.000 62 29 2 285 344 153 214 1.99e-11 65.9
Msa0347430 MtrunA17_Chr3g0126391 53.333 60 24 2 284 339 131 190 2.94e-13 71.6
Msa0347430 MtrunA17_Chr3g0126391 34.513 113 62 3 500 604 132 240 5.00e-12 67.8
Msa0347430 MtrunA17_Chr4g0009881 50.847 59 28 1 286 344 17 74 2.97e-13 66.6
Msa0347430 MtrunA17_Chr8g0347251 51.724 58 24 2 286 339 136 193 2.61e-12 68.9
Msa0347430 MtrunA17_Chr1g0188971 41.096 73 41 1 451 521 10 82 2.79e-12 62.8
Msa0347430 MtrunA17_Chr7g0275531 44.286 70 33 3 286 349 118 187 8.89e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347430 AT5G56270.1 50.067 741 276 28 1 703 1 685 0.0 535
Msa0347430 AT4G26440.1 42.697 712 251 22 1 702 1 565 6.75e-145 435
Msa0347430 AT4G26640.7 43.074 462 186 13 113 566 14 406 1.78e-94 303
Msa0347430 AT4G26640.2 43.074 462 186 13 113 566 54 446 7.51e-94 302
Msa0347430 AT4G26640.5 52.234 291 87 7 281 566 27 270 1.23e-83 270
Msa0347430 AT4G26640.6 52.234 291 87 7 281 566 27 270 1.23e-83 270
Msa0347430 AT4G26640.4 52.234 291 87 7 281 566 27 270 1.23e-83 270
Msa0347430 AT4G26640.3 52.234 291 87 7 281 566 27 270 1.23e-83 270
Msa0347430 AT4G26640.1 52.234 291 87 7 281 566 131 374 5.67e-83 271
Msa0347430 AT2G38470.1 51.379 290 98 4 286 572 184 433 5.20e-81 267
Msa0347430 AT2G03340.1 49.301 286 91 8 284 567 248 481 2.33e-75 252
Msa0347430 AT2G03340.1 51.316 76 36 1 501 576 250 324 1.85e-16 83.6
Msa0347430 AT1G13960.2 47.857 280 105 6 284 560 74 315 5.99e-73 241
Msa0347430 AT1G13960.1 47.857 280 105 6 284 560 227 468 8.66e-73 245
Msa0347430 AT2G37260.3 47.387 287 102 10 280 557 79 325 2.44e-59 204
Msa0347430 AT2G37260.3 52.055 73 30 2 502 570 86 157 2.36e-14 75.5
Msa0347430 AT2G37260.2 47.387 287 102 10 280 557 77 323 2.89e-59 204
Msa0347430 AT2G37260.2 52.055 73 30 2 502 570 84 155 2.45e-14 75.5
Msa0347430 AT2G37260.1 47.387 287 102 10 280 557 159 405 6.76e-59 205
Msa0347430 AT2G37260.1 52.055 73 30 2 502 570 166 237 3.32e-14 75.9
Msa0347430 AT5G07100.2 68.519 108 25 1 456 563 105 203 1.58e-42 154
Msa0347430 AT5G07100.2 70.149 67 19 1 285 350 23 89 1.85e-24 102
Msa0347430 AT5G07100.2 45.882 85 44 1 501 583 24 108 3.44e-15 75.9
Msa0347430 AT5G07100.2 54.688 64 28 1 286 348 141 204 3.88e-14 72.8
Msa0347430 AT5G07100.4 68.519 108 25 1 456 563 105 203 1.58e-42 154
Msa0347430 AT5G07100.4 70.149 67 19 1 285 350 23 89 1.85e-24 102
Msa0347430 AT5G07100.4 45.882 85 44 1 501 583 24 108 3.44e-15 75.9
Msa0347430 AT5G07100.4 54.688 64 28 1 286 348 141 204 3.88e-14 72.8
Msa0347430 AT5G07100.5 68.519 108 25 1 456 563 105 203 1.58e-42 154
Msa0347430 AT5G07100.5 70.149 67 19 1 285 350 23 89 1.85e-24 102
Msa0347430 AT5G07100.5 45.882 85 44 1 501 583 24 108 3.44e-15 75.9
Msa0347430 AT5G07100.5 54.688 64 28 1 286 348 141 204 3.88e-14 72.8
Msa0347430 AT5G07100.3 68.519 108 25 1 456 563 105 203 1.58e-42 154
Msa0347430 AT5G07100.3 70.149 67 19 1 285 350 23 89 1.85e-24 102
Msa0347430 AT5G07100.3 45.882 85 44 1 501 583 24 108 3.44e-15 75.9
Msa0347430 AT5G07100.3 54.688 64 28 1 286 348 141 204 3.88e-14 72.8
Msa0347430 AT5G07100.1 68.519 108 25 1 456 563 198 296 3.88e-42 155
Msa0347430 AT5G07100.1 70.149 67 19 1 285 350 116 182 4.77e-24 103
Msa0347430 AT5G07100.1 34.899 149 78 3 448 583 59 201 4.65e-16 80.1
Msa0347430 AT5G07100.1 54.688 64 28 1 286 348 234 297 5.01e-14 73.9
Msa0347430 AT4G30935.1 35.986 289 129 8 277 563 159 393 5.08e-42 159
Msa0347430 AT4G30935.1 51.899 79 33 2 278 355 327 401 4.47e-17 85.1
Msa0347430 AT4G12020.7 39.662 237 97 7 287 521 469 661 1.15e-39 158
Msa0347430 AT4G12020.7 41.304 92 43 2 500 581 467 557 3.67e-12 70.9
Msa0347430 AT4G12020.10 39.662 237 97 7 287 521 469 661 1.15e-39 158
Msa0347430 AT4G12020.10 41.304 92 43 2 500 581 467 557 3.37e-12 70.9
Msa0347430 AT4G12020.6 39.662 237 97 7 287 521 469 661 1.17e-39 158
Msa0347430 AT4G12020.6 41.304 92 43 2 500 581 467 557 3.88e-12 70.5
Msa0347430 AT4G12020.8 39.662 237 97 7 287 521 469 661 1.17e-39 158
Msa0347430 AT4G12020.8 41.304 92 43 2 500 581 467 557 3.88e-12 70.5
Msa0347430 AT4G12020.1 39.662 237 97 7 287 521 469 661 1.18e-39 158
Msa0347430 AT4G12020.1 41.304 92 43 2 500 581 467 557 3.80e-12 70.9
Msa0347430 AT4G12020.9 39.662 237 97 7 287 521 469 661 1.18e-39 158
Msa0347430 AT4G12020.9 41.304 92 43 2 500 581 467 557 3.80e-12 70.9
Msa0347430 AT4G12020.3 39.662 237 97 7 287 521 469 661 1.19e-39 158
Msa0347430 AT4G12020.3 41.304 92 43 2 500 581 467 557 3.64e-12 70.9
Msa0347430 AT4G12020.2 39.662 237 97 7 287 521 469 661 1.49e-39 158
Msa0347430 AT4G12020.2 41.304 92 43 2 500 581 467 557 3.93e-12 70.5
Msa0347430 AT4G12020.4 39.662 237 97 7 287 521 469 661 1.51e-39 158
Msa0347430 AT4G12020.4 41.304 92 43 2 500 581 467 557 3.80e-12 70.9
Msa0347430 AT4G12020.5 39.662 237 97 7 287 521 402 594 1.53e-39 157
Msa0347430 AT4G12020.5 41.304 92 43 2 500 581 400 490 3.71e-12 70.9
Msa0347430 AT4G12020.11 39.662 237 97 7 287 521 469 661 2.47e-39 157
Msa0347430 AT4G12020.11 41.304 92 43 2 500 581 467 557 5.59e-12 70.1
Msa0347430 AT3G01080.1 71.579 95 24 1 466 560 274 365 7.48e-39 149
Msa0347430 AT3G01080.1 72.857 70 18 1 284 353 165 233 3.66e-27 115
Msa0347430 AT3G01080.1 55.556 63 27 1 501 563 167 228 2.29e-14 76.3
Msa0347430 AT3G01080.1 58.333 60 24 1 286 344 306 365 3.21e-14 75.9
Msa0347430 AT3G01080.2 71.579 95 24 1 466 560 312 403 7.93e-39 150
Msa0347430 AT3G01080.2 72.857 70 18 1 284 353 203 271 3.82e-27 115
Msa0347430 AT3G01080.2 55.556 63 27 1 501 563 205 266 1.83e-14 77.0
Msa0347430 AT3G01080.2 58.333 60 24 1 286 344 344 403 2.36e-14 76.6
Msa0347430 AT2G30250.1 66.265 83 28 0 480 562 307 389 2.26e-34 135
Msa0347430 AT2G30250.1 67.692 65 21 0 285 349 165 229 5.56e-22 99.4
Msa0347430 AT2G30250.1 56.923 65 27 1 287 350 329 393 5.55e-14 75.1
Msa0347430 AT2G30250.1 47.561 82 37 2 479 560 149 224 1.64e-12 70.5
Msa0347430 AT2G04880.2 57.692 104 44 0 466 569 248 351 2.85e-33 134
Msa0347430 AT2G04880.2 64.407 59 21 0 286 344 111 169 2.47e-20 95.1
Msa0347430 AT2G04880.2 51.220 82 35 2 287 367 284 361 2.07e-17 86.3
Msa0347430 AT2G04880.2 36.036 111 64 3 499 604 109 217 3.36e-14 76.3
Msa0347430 AT2G04880.1 57.692 104 44 0 466 569 272 375 5.63e-33 133
Msa0347430 AT2G04880.1 64.407 59 21 0 286 344 111 169 3.08e-20 95.1
Msa0347430 AT2G04880.1 51.220 82 35 2 287 367 308 385 2.34e-17 86.3
Msa0347430 AT2G04880.1 50.000 64 31 1 499 562 109 171 5.83e-13 72.4
Msa0347430 AT2G44745.1 62.353 85 31 1 482 566 126 209 6.05e-31 121
Msa0347430 AT2G44745.1 61.404 57 21 1 286 341 145 201 8.69e-17 80.5
Msa0347430 AT1G55600.1 61.628 86 33 0 477 562 283 368 1.73e-29 123
Msa0347430 AT1G55600.1 58.333 60 24 1 287 345 308 367 2.18e-15 80.1
Msa0347430 AT4G18170.1 50.435 115 46 1 458 561 118 232 1.13e-28 117
Msa0347430 AT4G18170.1 63.333 60 21 1 286 344 172 231 6.22e-17 82.8
Msa0347430 AT4G39410.1 48.462 130 50 3 450 574 184 301 1.70e-28 116
Msa0347430 AT4G39410.1 52.632 57 26 1 286 341 223 279 8.11e-13 70.5
Msa0347430 AT1G69310.4 62.195 82 31 0 476 557 122 203 2.30e-28 115
Msa0347430 AT1G69310.4 61.404 57 21 1 286 341 147 203 6.17e-16 79.3
Msa0347430 AT1G69310.2 62.195 82 31 0 476 557 122 203 2.30e-28 115
Msa0347430 AT1G69310.2 61.404 57 21 1 286 341 147 203 6.17e-16 79.3
Msa0347430 AT1G69310.1 62.195 82 31 0 476 557 122 203 2.30e-28 115
Msa0347430 AT1G69310.1 61.404 57 21 1 286 341 147 203 6.17e-16 79.3
Msa0347430 AT3G01080.3 72.857 70 18 1 284 353 203 271 2.87e-28 116
Msa0347430 AT3G01080.3 55.556 63 27 1 501 563 205 266 4.25e-15 77.4
Msa0347430 AT1G29860.1 62.821 78 29 0 485 562 120 197 2.59e-27 112
Msa0347430 AT1G29860.1 48.421 95 35 2 286 379 136 217 1.91e-17 84.0
Msa0347430 AT2G47260.1 53.535 99 44 1 485 583 158 254 2.42e-26 111
Msa0347430 AT2G47260.1 44.565 92 50 1 258 348 146 237 4.94e-16 80.5
Msa0347430 AT5G13080.1 50.000 100 50 0 460 559 26 125 3.57e-26 105
Msa0347430 AT5G13080.1 51.724 58 27 1 286 342 67 124 1.20e-14 72.0
Msa0347430 AT5G46350.1 58.750 80 33 0 487 566 169 248 7.09e-26 109
Msa0347430 AT5G46350.1 53.947 76 33 2 286 360 183 257 3.74e-17 83.6
Msa0347430 AT3G01970.1 65.278 72 25 0 488 559 52 123 1.78e-25 103
Msa0347430 AT3G01970.1 53.125 64 27 2 286 347 65 127 5.96e-14 70.1
Msa0347430 AT5G49520.1 61.842 76 29 0 485 560 205 280 1.97e-25 109
Msa0347430 AT5G49520.1 60.000 60 23 1 286 344 221 280 9.11e-16 80.5
Msa0347430 AT5G26170.1 61.429 70 27 0 488 557 100 169 6.98e-25 102
Msa0347430 AT5G26170.1 52.632 57 26 1 286 341 113 169 1.32e-14 72.8
Msa0347430 AT4G04450.2 54.545 88 39 1 476 562 173 260 1.36e-24 107
Msa0347430 AT4G04450.2 44.565 92 49 2 256 345 168 259 1.13e-15 80.5
Msa0347430 AT5G41570.1 57.895 76 32 0 482 557 79 154 1.49e-24 101
Msa0347430 AT5G41570.1 39.796 98 55 2 249 342 58 155 1.51e-15 75.9
Msa0347430 AT5G64810.1 57.746 71 30 0 488 558 97 167 1.96e-24 101
Msa0347430 AT5G64810.1 49.123 57 28 1 286 341 110 166 5.02e-11 63.2
Msa0347430 AT2G46130.1 55.000 80 36 0 478 557 7 86 5.97e-24 97.4
Msa0347430 AT2G46130.1 63.793 58 20 1 286 342 30 87 1.30e-18 82.4
Msa0347430 AT4G04450.1 54.545 88 39 1 476 562 267 354 6.13e-24 107
Msa0347430 AT4G04450.1 44.565 92 49 2 256 345 262 353 2.53e-15 80.1
Msa0347430 AT1G64000.1 56.579 76 33 0 482 557 95 170 8.51e-24 100
Msa0347430 AT1G64000.1 53.448 58 26 1 286 342 114 171 1.52e-15 76.3
Msa0347430 AT1G69310.3 58.537 82 30 1 476 557 122 199 1.08e-23 102
Msa0347430 AT1G69310.3 56.140 57 20 2 286 341 147 199 2.02e-11 65.9
Msa0347430 AT4G22070.4 53.488 86 39 1 476 560 272 357 2.61e-23 105
Msa0347430 AT4G22070.4 54.098 61 26 2 287 345 298 358 3.23e-14 76.6
Msa0347430 AT4G22070.3 53.488 86 39 1 476 560 272 357 2.61e-23 105
Msa0347430 AT4G22070.3 54.098 61 26 2 287 345 298 358 3.23e-14 76.6
Msa0347430 AT4G22070.2 53.488 86 39 1 476 560 272 357 2.61e-23 105
Msa0347430 AT4G22070.2 54.098 61 26 2 287 345 298 358 3.23e-14 76.6
Msa0347430 AT4G22070.1 53.488 86 39 1 476 560 272 357 2.61e-23 105
Msa0347430 AT4G22070.1 54.098 61 26 2 287 345 298 358 3.23e-14 76.6
Msa0347430 AT3G62340.1 50.943 106 48 1 477 578 94 199 6.36e-23 99.8
Msa0347430 AT3G62340.1 56.667 60 25 1 286 344 118 177 6.09e-15 76.3
Msa0347430 AT1G62300.1 54.878 82 36 1 480 560 291 372 1.25e-22 103
Msa0347430 AT1G62300.1 54.098 61 26 2 287 345 313 373 2.44e-14 77.0
Msa0347430 AT1G68150.1 50.000 90 44 1 485 573 219 308 2.67e-22 100
Msa0347430 AT1G68150.1 53.333 60 26 2 287 344 236 295 1.29e-12 70.5
Msa0347430 AT5G15130.2 48.193 83 42 1 484 565 168 250 4.14e-22 100
Msa0347430 AT5G15130.1 46.067 89 47 1 478 565 204 292 4.97e-22 101
Msa0347430 AT1G18860.1 52.564 78 36 1 484 560 222 299 1.27e-21 99.8
Msa0347430 AT1G18860.1 53.333 60 26 2 287 344 240 299 3.04e-12 70.1
Msa0347430 AT4G01720.1 54.545 77 34 1 485 560 223 299 1.03e-20 96.7
Msa0347430 AT4G01720.1 49.315 73 35 2 275 345 228 300 8.68e-14 75.1
Msa0347430 AT2G21900.1 41.509 106 47 3 461 562 76 170 5.73e-20 89.4
Msa0347430 AT2G21900.1 50.000 60 29 1 286 344 109 168 4.72e-13 68.9
Msa0347430 AT2G23320.1 47.368 95 39 3 466 559 215 299 1.17e-19 90.9
Msa0347430 AT2G23320.1 52.632 57 25 2 287 341 241 297 1.56e-11 66.6
Msa0347430 AT4G24240.1 49.474 95 37 3 466 559 256 340 1.83e-19 91.3
Msa0347430 AT4G24240.1 50.877 57 26 2 287 341 282 338 2.16e-11 66.6
Msa0347430 AT5G28650.1 39.231 130 68 3 439 567 210 329 2.23e-19 90.5
Msa0347430 AT5G28650.1 52.632 57 25 2 287 341 263 319 2.97e-11 65.9
Msa0347430 AT2G46130.2 51.250 80 35 1 478 557 7 82 2.43e-19 84.3
Msa0347430 AT2G46130.2 58.621 58 19 2 286 342 30 83 4.22e-14 69.3
Msa0347430 AT4G31550.1 47.059 102 50 2 472 569 217 318 1.35e-18 88.2
Msa0347430 AT4G31550.1 43.421 76 40 3 268 341 229 303 1.83e-11 66.6
Msa0347430 AT3G04670.1 44.660 103 46 3 466 567 237 329 1.37e-18 88.2
Msa0347430 AT3G04670.1 50.847 59 27 2 287 343 263 321 5.20e-11 65.1
Msa0347430 AT2G24570.1 43.636 110 59 2 472 580 214 321 2.55e-18 87.0
Msa0347430 AT2G24570.1 43.421 76 40 3 268 341 226 300 2.37e-11 66.2
Msa0347430 AT4G31550.2 51.087 92 41 2 482 569 226 317 3.02e-18 87.0
Msa0347430 AT4G31550.2 43.421 76 40 3 268 341 228 302 1.88e-11 66.6
Msa0347430 AT2G30590.1 34.965 143 79 4 416 557 241 370 4.30e-18 87.4
Msa0347430 AT2G30590.1 52.941 68 29 3 280 345 308 374 1.14e-13 73.9
Msa0347430 AT1G80840.1 51.562 64 30 1 499 561 144 207 4.32e-18 86.3
Msa0347430 AT1G80840.1 50.820 61 28 2 286 344 146 206 2.20e-12 68.9
Msa0347430 AT5G43290.1 59.322 59 24 0 499 557 112 170 5.33e-18 85.1
Msa0347430 AT5G43290.1 58.621 58 23 1 285 341 113 170 8.08e-13 70.1
Msa0347430 AT4G23550.1 46.753 77 40 1 490 565 129 205 9.05e-18 85.5
Msa0347430 AT4G23550.1 45.833 72 35 3 287 356 141 210 3.68e-11 65.5
Msa0347430 AT1G69810.2 43.158 95 50 3 484 576 128 220 3.11e-17 84.0
Msa0347430 AT1G69810.2 44.444 72 37 2 287 355 146 217 4.60e-12 68.6
Msa0347430 AT1G69810.1 43.158 95 50 3 484 576 186 278 5.16e-17 84.3
Msa0347430 AT1G69810.1 44.444 72 37 2 287 355 204 275 4.23e-12 68.9
Msa0347430 AT2G25000.2 45.205 73 39 1 500 571 102 174 7.18e-17 80.9
Msa0347430 AT2G25000.2 49.180 61 29 2 286 344 103 163 3.20e-11 64.3
Msa0347430 AT2G25000.4 45.205 73 39 1 500 571 102 174 7.18e-17 80.9
Msa0347430 AT2G25000.4 49.180 61 29 2 286 344 103 163 3.20e-11 64.3
Msa0347430 AT2G25000.3 45.205 73 39 1 500 571 124 196 1.16e-16 80.9
Msa0347430 AT2G25000.3 49.180 61 29 2 286 344 125 185 4.82e-11 64.3
Msa0347430 AT2G25000.1 45.205 73 39 1 500 571 145 217 1.90e-16 80.5
Msa0347430 AT2G25000.1 49.180 61 29 2 286 344 146 206 7.24e-11 63.9
Msa0347430 AT4G31800.2 50.000 64 31 1 500 562 110 173 4.01e-16 79.0
Msa0347430 AT4G31800.2 47.541 61 30 2 286 344 111 171 6.34e-12 66.6
Msa0347430 AT4G31800.1 50.000 64 31 1 500 562 175 238 7.91e-16 79.3
Msa0347430 AT4G31800.1 47.541 61 30 2 286 344 176 236 9.91e-12 67.0
Msa0347430 AT4G01250.1 41.748 103 44 2 464 565 106 193 1.03e-15 79.0
Msa0347430 AT4G01250.1 48.333 60 29 2 287 344 129 188 1.69e-11 66.2
Msa0347430 AT2G40740.1 36.434 129 73 4 216 340 108 231 2.53e-15 77.8
Msa0347430 AT2G40740.3 36.434 129 73 4 216 340 117 240 3.59e-15 77.4
Msa0347430 AT5G52830.1 43.529 85 46 2 482 565 147 230 4.58e-15 77.8
Msa0347430 AT5G52830.1 51.613 62 28 2 285 344 164 225 6.70e-13 71.2
Msa0347430 AT1G29280.1 51.562 64 29 2 283 344 71 134 1.93e-14 74.3
Msa0347430 AT1G29280.1 47.692 65 33 1 502 565 75 139 3.85e-14 73.6
Msa0347430 AT2G34830.1 38.000 100 56 2 467 565 186 280 5.60e-14 75.1
Msa0347430 AT2G34830.1 51.667 60 27 2 287 344 216 275 6.33e-12 68.9
Msa0347430 AT1G30650.1 38.000 100 56 2 467 565 188 282 6.26e-14 75.1
Msa0347430 AT1G30650.1 50.000 60 28 2 287 344 218 277 1.91e-11 67.4
Msa0347430 AT2G34830.2 38.000 100 56 2 467 565 195 289 6.86e-14 75.1
Msa0347430 AT2G34830.2 51.667 60 27 2 287 344 225 284 6.80e-12 68.6
Msa0347430 AT3G58710.2 47.826 69 33 2 502 567 71 139 2.59e-13 71.2
Msa0347430 AT3G58710.2 52.381 63 28 2 284 344 68 130 9.89e-13 69.7
Msa0347430 AT3G58710.1 47.826 69 33 2 502 567 72 140 2.70e-13 71.2
Msa0347430 AT3G58710.1 52.381 63 28 2 284 344 69 131 1.01e-12 69.7
Msa0347430 AT5G45050.4 47.692 65 33 1 502 565 1042 1106 1.54e-12 72.0
Msa0347430 AT5G45050.4 50.769 65 30 2 282 344 1037 1101 4.45e-12 70.5
Msa0347430 AT5G45050.1 47.692 65 33 1 502 565 1181 1245 1.70e-12 71.6
Msa0347430 AT5G45050.1 50.769 65 30 2 282 344 1176 1240 4.43e-12 70.5
Msa0347430 AT5G45050.2 47.692 65 33 1 502 565 1153 1217 1.77e-12 71.6
Msa0347430 AT5G45050.2 50.769 65 30 2 282 344 1148 1212 4.25e-12 70.5
Msa0347430 AT4G23810.1 45.902 61 29 2 284 340 156 216 2.90e-12 68.9
Msa0347430 AT5G45260.1 33.645 107 62 4 256 355 1175 1279 1.80e-11 68.6
Msa0347430 AT5G24110.1 38.144 97 49 5 278 369 106 196 1.96e-11 66.2
Msa0347430 AT4G11070.2 43.056 72 35 3 284 349 107 178 3.44e-11 65.1
Msa0347430 AT4G11070.1 43.056 72 35 3 284 349 139 210 4.66e-11 65.1
Msa0347430 AT2G46400.1 27.429 175 103 5 454 622 65 221 6.82e-11 64.3

Find 228 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGACTTGGAGGAGGTTT+TGG 0.149218 3_1:+8444122 None:intergenic
CATTATTCTTCACATGTTAA+AGG 0.167499 3_1:-8442664 Msa0347430:three_prime_UTR
TCTCTTACATATTCTTTAAA+AGG 0.187225 3_1:-8442783 Msa0347430:three_prime_UTR
GATGAAAATCTTGCACTTAA+TGG 0.200418 3_1:-8446368 Msa0347430:CDS
TTTACAATTCTTCACTTCTT+AGG 0.213546 3_1:-8446990 Msa0347430:intron
TTCAAGCCTACAACAGATTC+AGG 0.225658 3_1:-8445271 Msa0347430:CDS
GAGAGACCCAGATACAATTT+TGG 0.236916 3_1:-8447110 Msa0347430:five_prime_UTR
GTGGTGGCGGTGACCTAGGC+TGG 0.251395 3_1:-8444025 Msa0347430:CDS
ACCCGACCCAAAATTGTATC+TGG 0.267656 3_1:+8447103 None:intergenic
CTTGGTTCGTTCAACCTTCC+CGG 0.268626 3_1:-8443109 Msa0347430:CDS
CGCTACCCTTAACTTGCTTT+TGG 0.278034 3_1:+8444261 None:intergenic
ATATAGCTGGAGCTGGTAAT+TGG 0.284730 3_1:-8443983 Msa0347430:CDS
GGTTATCGGTGGCGGAAATA+TGG 0.285913 3_1:-8443537 Msa0347430:CDS
TATAGATAATCTCCGTTATA+TGG 0.291827 3_1:+8444162 None:intergenic
TATAACGGAGATTATCTATA+AGG 0.305177 3_1:-8444159 Msa0347430:CDS
CTTTCTCAGCAATCCCTTCA+TGG 0.309397 3_1:-8444518 Msa0347430:CDS
TCCTCGCAAGCAAAGCTTCC+TGG 0.313451 3_1:-8443004 Msa0347430:CDS
GGATATAATTGGAGAAAATA+TGG 0.316349 3_1:-8444284 Msa0347430:CDS
TGGGTCGGGTTCGGGTTTCT+CGG 0.325293 3_1:-8447090 Msa0347430:five_prime_UTR
TGCTCTCTGTATTCAACCTT+GGG 0.329383 3_1:+8446114 None:intergenic
AACAATCTGCAAACTCAAAA+TGG 0.329462 3_1:-8443903 Msa0347430:CDS
GATAACTTGTATCGCTCAAT+TGG 0.335113 3_1:+8446207 None:intergenic
CGTCGGAGGATGGATATAAT+TGG 0.337472 3_1:-8444295 Msa0347430:CDS
ATGTAGTGATCACAGATTTA+AGG 0.340679 3_1:+8443290 None:intergenic
CCGCGAACTCGACTTGTTCT+CGG 0.346353 3_1:+8446181 None:intergenic
AATGGAAACTTTCCTGTTGT+TGG 0.346418 3_1:+8445394 None:intergenic
TCCACATTTGGTTCTCCCTT+TGG 0.354303 3_1:+8442911 None:intergenic
ATCTTGCACTTAATGGTGAT+TGG 0.355877 3_1:-8446361 Msa0347430:CDS
TCTTGCACTTAATGGTGATT+GGG 0.356687 3_1:-8446360 Msa0347430:CDS
CCAAGTCGCCGGTCGGGCAT+AGG 0.363280 3_1:-8444110 Msa0347430:CDS
CCAGGTGGTATAGTCAAGTA+TGG 0.373638 3_1:+8446050 None:intergenic
GGTACTACTCACATTGATTC+AGG 0.374030 3_1:-8443882 Msa0347430:CDS
CATGAATCCCATTTCATTTG+CGG 0.377014 3_1:+8442937 None:intergenic
CGTGTTCCTTGCAAATTCAT+TGG 0.378555 3_1:-8445997 Msa0347430:intron
AAAAGACAATTCCACACAAT+TGG 0.378668 3_1:-8444390 Msa0347430:CDS
AACTTTCCTGTTGTTGGAGA+TGG 0.388150 3_1:+8445400 None:intergenic
ATGTTAAGGCCGCCGCGTTC+AGG 0.388731 3_1:+8442881 None:intergenic
GCAACGCGCCGCAAATGAAA+TGG 0.390178 3_1:-8442945 Msa0347430:CDS
CCCTGTGGTTCACCATGTTC+AGG 0.392039 3_1:+8444050 None:intergenic
GATAGAATTGCTGCTAGAAC+TGG 0.395317 3_1:-8446146 Msa0347430:CDS
GGCGGCCTTAACATGCAAAA+TGG 0.396093 3_1:-8442872 Msa0347430:CDS
GAACCTTGCAATGTCGGGAT+TGG 0.397116 3_1:-8443032 Msa0347430:CDS
AACGGAGACTCGTTGGTTGC+TGG 0.397644 3_1:-8444332 Msa0347430:CDS
TGTTGTTGCTGCATCATGAA+TGG 0.397926 3_1:+8442968 None:intergenic
AACCTTGCAATGTCGGGATT+GGG 0.398700 3_1:-8443031 Msa0347430:CDS
ATAACGGAGATTATCTATAA+GGG 0.399044 3_1:-8444158 Msa0347430:CDS
GCAGCTCAAGGACAAGCTTC+TGG 0.405122 3_1:-8443196 Msa0347430:CDS
TTGTGAACTTGAGATGGTTC+AGG 0.405320 3_1:+8443148 None:intergenic
TCAGGATTAGCGTCCACATT+TGG 0.408554 3_1:+8442899 None:intergenic
AAGTTTCCATTTGTTTCAAA+TGG 0.409529 3_1:-8445382 Msa0347430:CDS
GGTCATCCACATGGCTTCTT+CGG 0.412134 3_1:-8443073 Msa0347430:CDS
TACTACAAGTGCACCAATGC+AGG 0.412359 3_1:-8443352 Msa0347430:CDS
CAAAAGTAGCCTCCATCTTA+AGG 0.414541 3_1:-8444438 Msa0347430:CDS
CCTATGCCCGACCGGCGACT+TGG 0.417252 3_1:+8444110 None:intergenic
GACTCGTTGGTTGCTGGTGT+TGG 0.424263 3_1:-8444326 Msa0347430:CDS
TACAGTGAGGTTTGAATGGC+TGG 0.425606 3_1:-8446395 Msa0347430:exon
ATATGGCCAAAAGCAAGTTA+AGG 0.425865 3_1:-8444267 Msa0347430:CDS
CTTCTAGCAGTCTAGAGAAA+AGG 0.425888 3_1:+8446312 None:intergenic
GAACCACAGGGTGGTGGTGG+CGG 0.428122 3_1:-8444038 Msa0347430:CDS
GGAAGCTTTGCTTGCGAGGA+AGG 0.428637 3_1:+8443007 None:intergenic
AATGGGTTCATAGGCATTCC+AGG 0.429862 3_1:+8442986 None:intergenic
CCTTACAGTGCACCCTGCAT+TGG 0.431542 3_1:+8443339 None:intergenic
GAGGGACAAGATGGTGATTC+CGG 0.435458 3_1:-8446233 Msa0347430:CDS
CCTCCTCCAAGTCGCCGGTC+GGG 0.437583 3_1:-8444116 Msa0347430:CDS
GAGGGAGAACAGAGAGTTAA+CGG 0.439955 3_1:-8444350 Msa0347430:CDS
AAGAATGACTACCTTGGGTT+GGG 0.441222 3_1:+8443492 None:intergenic
ATGCCCGACCGGCGACTTGG+AGG 0.444075 3_1:+8444113 None:intergenic
CTTCCCGAATGTTCTGAATT+CGG 0.445571 3_1:+8446266 None:intergenic
ATGCTCTCTGTATTCAACCT+TGG 0.445623 3_1:+8446113 None:intergenic
TGTATTCATCTGCAAATTGA+AGG 0.445832 3_1:+8444547 None:intergenic
ATGGTTCAGGTCTATGCATA+TGG 0.448997 3_1:+8443161 None:intergenic
ACGACCGAATTCAGAACATT+CGG 0.453189 3_1:-8446270 Msa0347430:CDS
GAGGGCCCTGAATCTGTTGT+AGG 0.453857 3_1:+8445265 None:intergenic
TTCTAGCAGTCTAGAGAAAA+GGG 0.457090 3_1:+8446313 None:intergenic
CAAGTCGCCGGTCGGGCATA+GGG 0.457479 3_1:-8444109 Msa0347430:CDS
GGTGGTGGTGGCGGTGACCT+AGG 0.460809 3_1:-8444029 Msa0347430:CDS
GTTGTTGCTGCATCATGAAT+GGG 0.462753 3_1:+8442969 None:intergenic
GGAGAATCTAAAAGTGTAGT+AGG 0.463976 3_1:+8446020 None:intergenic
ATGACCTAGCTGCTGTCTCC+CGG 0.464009 3_1:+8443090 None:intergenic
GTTGGACTGGTTACCGTACC+CGG 0.464743 3_1:+8443923 None:intergenic
AGTAGCCTCCATCTTAAGGC+TGG 0.467371 3_1:-8444434 Msa0347430:CDS
GTGTACTCATTCAAATTGTC+CGG 0.469086 3_1:-8444216 Msa0347430:CDS
ATTATGAATCACATGCCTCT+TGG 0.469433 3_1:-8442827 Msa0347430:CDS
CTGTCGAACCTTGCAATGTC+GGG 0.470366 3_1:-8443037 Msa0347430:CDS
TATGGCCAAAAGCAAGTTAA+GGG 0.471248 3_1:-8444266 Msa0347430:CDS
ACTCATGGTAGTGTATCATT+AGG 0.472631 3_1:-8443801 Msa0347430:CDS
ATGTTGCCATTTGAAACAAA+TGG 0.473438 3_1:+8445376 None:intergenic
TTGATACAGTGAGGTTTGAA+TGG 0.475296 3_1:-8446399 Msa0347430:exon
ATATCCTCGATGATGGTTAT+CGG 0.475694 3_1:-8443551 Msa0347430:CDS
TGACAGCCGACGTTGCTTCA+AGG 0.476507 3_1:+8443949 None:intergenic
TGGTGGCGGTGACCTAGGCT+GGG 0.476794 3_1:-8444024 Msa0347430:CDS
TGTTCTATCATTTCTAGTGG+TGG 0.480657 3_1:-8447055 Msa0347430:five_prime_UTR
CCAATGCAGGGTGCACTGTA+AGG 0.487294 3_1:-8443339 Msa0347430:CDS
CAACGCGCCGCAAATGAAAT+GGG 0.487752 3_1:-8442944 Msa0347430:CDS
GAGTTTGCAGATTGTTGGAC+TGG 0.488088 3_1:+8443910 None:intergenic
ATAACTTGTATCGCTCAATT+GGG 0.492378 3_1:+8446208 None:intergenic
GGTGAACCACAGGGTGGTGG+TGG 0.493152 3_1:-8444041 Msa0347430:CDS
GCACAGCCATCTCCAACAAC+AGG 0.493338 3_1:-8445406 Msa0347430:CDS
GTACAGAAGGGAAATATAGC+TGG 0.494656 3_1:-8443996 Msa0347430:CDS
CAGAAAACCCAGCCTTAAGA+TGG 0.500080 3_1:+8444426 None:intergenic
CGACCGAATTCAGAACATTC+GGG 0.500267 3_1:-8446269 Msa0347430:CDS
TGACTGCTGGAACGAGCAGC+GGG 0.501885 3_1:+8443241 None:intergenic
TTGGACTGGTTACCGTACCC+GGG 0.502105 3_1:+8443924 None:intergenic
TCCTGAACATGGTGAACCAC+AGG 0.504125 3_1:-8444051 Msa0347430:CDS
TGCATCATGAATGGGTTCAT+AGG 0.504266 3_1:+8442977 None:intergenic
GAGAAAAGGGACCTTGGACT+TGG 0.504964 3_1:+8446326 None:intergenic
TGCTTGCTCTTCCAATTGTG+TGG 0.509775 3_1:+8444379 None:intergenic
TTGGTTCGTTCAACCTTCCC+GGG 0.511536 3_1:-8443108 Msa0347430:CDS
CCCGACCGGCGACTTGGAGG+AGG 0.511920 3_1:+8444116 None:intergenic
ATCGAGGATATCTACTTCAC+TGG 0.514836 3_1:+8443563 None:intergenic
TGTTTCAAGATTAACACAAA+AGG 0.514869 3_1:-8447134 Msa0347430:five_prime_UTR
TACTTGACCCTATGCCCGAC+CGG 0.517752 3_1:+8444102 None:intergenic
GCAACGTCGGCTGTCAACCC+CGG 0.517979 3_1:-8443942 Msa0347430:CDS
AATTCAGAACATTCGGGAAG+TGG 0.517987 3_1:-8446263 Msa0347430:CDS
CCTGTCGAACCTTGCAATGT+CGG 0.519344 3_1:-8443038 Msa0347430:CDS
ATTCGCATTGACGTGACTGC+TGG 0.522171 3_1:+8443228 None:intergenic
TCCAGGAAGCTTTGCTTGCG+AGG 0.522306 3_1:+8443003 None:intergenic
CCGACATTGCAAGGTTCGAC+AGG 0.522335 3_1:+8443038 None:intergenic
AAATGATAGAACAAAAGAAT+CGG 0.522606 3_1:+8447065 None:intergenic
CCGAGAACAAGTCGAGTTCG+CGG 0.525857 3_1:-8446181 Msa0347430:CDS
CGAGAACAAGTCGAGTTCGC+GGG 0.525950 3_1:-8446180 Msa0347430:CDS
TTCTCATGAGGGCCATATAA+CGG 0.530629 3_1:-8444174 Msa0347430:CDS
TCGGCTGTCAACCCCGGGTA+CGG 0.531103 3_1:-8443936 Msa0347430:CDS
GGTGGTACTCCGTCGGAGGA+TGG 0.535484 3_1:-8444305 Msa0347430:CDS
TTTGTGTATGAATGAATGAA+TGG 0.540560 3_1:+8447184 None:intergenic
TAAGAATGACTACCTTGGGT+TGG 0.541313 3_1:+8443491 None:intergenic
CTAGCTGCTGTCTCCCGGGA+AGG 0.542522 3_1:+8443095 None:intergenic
GGAAGAGCAAGCAGATGAAG+AGG 0.543715 3_1:-8444369 Msa0347430:CDS
ACCTCCTCCAAGTCGCCGGT+CGG 0.544136 3_1:-8444117 Msa0347430:CDS
AGGCTGGGCTAATGTACAGA+AGG 0.548184 3_1:-8444009 Msa0347430:CDS
CTGAAGCTTCAACACCATGA+AGG 0.548464 3_1:+8444504 None:intergenic
GAAGCTTTGCTTGCGAGGAA+GGG 0.549966 3_1:+8443008 None:intergenic
TGTAATGATCAGACATACAT+AGG 0.551546 3_1:-8442720 Msa0347430:three_prime_UTR
AGGGACCTTGGACTTGGACT+AGG 0.551828 3_1:+8446332 None:intergenic
TCTAGTAGCTCCACTCATCT+CGG 0.552091 3_1:+8443620 None:intergenic
GGCCCAATCCCGACATTGCA+AGG 0.552372 3_1:+8443029 None:intergenic
TCAAGCCTACAACAGATTCA+GGG 0.552504 3_1:-8445270 Msa0347430:CDS
ATGGGATTCATGTTACCAAA+GGG 0.552557 3_1:-8442926 Msa0347430:CDS
AACTCACCAATGAATTTGCA+AGG 0.555999 3_1:+8445991 None:intergenic
CCCGACCCAAAATTGTATCT+GGG 0.559927 3_1:+8447104 None:intergenic
TCGTTGGTTGCTGGTGTTGG+TGG 0.561622 3_1:-8444323 Msa0347430:CDS
GTAGCCTCCATCTTAAGGCT+GGG 0.561977 3_1:-8444433 Msa0347430:CDS
CTTGCACTTAATGGTGATTG+GGG 0.562929 3_1:-8446359 Msa0347430:CDS
GAACTCGACTTGTTCTCGGT+TGG 0.563005 3_1:+8446185 None:intergenic
GAAGTAGATATCCTCGATGA+TGG 0.563214 3_1:-8443558 Msa0347430:CDS
TGACCTAGCTGCTGTCTCCC+GGG 0.564057 3_1:+8443091 None:intergenic
GAAGAAGAGGAAGACGATCA+AGG 0.566238 3_1:-8443825 Msa0347430:CDS
GTACACTTGTAGTAACTTCG+AGG 0.567336 3_1:+8444233 None:intergenic
CAACGTCGGCTGTCAACCCC+GGG 0.567847 3_1:-8443941 Msa0347430:CDS
AACGGCATGAGGCCTTCACT+TGG 0.568799 3_1:-8443127 Msa0347430:CDS
TCTGTACATTAGCCCAGCCT+AGG 0.570398 3_1:+8444012 None:intergenic
GTAGTCTGAACAACAACTCT+AGG 0.571480 3_1:+8443585 None:intergenic
GTCTTCCTAGTCCAAGTCCA+AGG 0.572524 3_1:-8446337 Msa0347430:CDS
AAGGGAAATATAGCTGGAGC+TGG 0.574752 3_1:-8443990 Msa0347430:CDS
CAATGAATTTGCAAGGAACA+CGG 0.575971 3_1:+8445998 None:intergenic
TGTATCGCTCAATTGGGTAC+CGG 0.577573 3_1:+8446214 None:intergenic
CAAAACCTCCTCCAAGTCGC+CGG 0.578429 3_1:-8444121 Msa0347430:CDS
GGTAGAACTGAGGGACAAGA+TGG 0.580548 3_1:-8446242 Msa0347430:CDS
TCCTCATGCTGACATGCAAG+TGG 0.580998 3_1:-8444078 Msa0347430:CDS
GGTGGTTGAACTTCCTTGTG+TGG 0.584188 3_1:-8447037 Msa0347430:five_prime_UTR
TGAAGCTTCAACACCATGAA+GGG 0.585732 3_1:+8444505 None:intergenic
TCGATGATGGTTATCGGTGG+CGG 0.587391 3_1:-8443545 Msa0347430:CDS
ATGAATCAGAGTCTAAAAGA+AGG 0.588175 3_1:-8443761 Msa0347430:intron
GAATCATATGCCGAGATGAG+TGG 0.589323 3_1:-8443630 Msa0347430:CDS
GAAAGTAGAACGTTCTCATG+AGG 0.589600 3_1:-8444186 Msa0347430:CDS
ATGCCGTTGTGAACTTGAGA+TGG 0.595174 3_1:+8443142 None:intergenic
CTCAAGTTCACAACGGCATG+AGG 0.596029 3_1:-8443138 Msa0347430:CDS
GAGAGTTAACGGAGACTCGT+TGG 0.596680 3_1:-8444339 Msa0347430:CDS
TAACGGAGATTATCTATAAG+GGG 0.597866 3_1:-8444157 Msa0347430:CDS
CATTGATTCAGGAGATGCAG+TGG 0.597968 3_1:-8443871 Msa0347430:CDS
AACAACTCTAGGCTCGCGAA+TGG 0.599268 3_1:+8443596 None:intergenic
AATGAATTTGCAAGGAACAC+GGG 0.604026 3_1:+8445999 None:intergenic
TCCACTTGCATGTCAGCATG+AGG 0.604158 3_1:+8444077 None:intergenic
AAAGTAGAACGTTCTCATGA+GGG 0.604575 3_1:-8444185 Msa0347430:CDS
AGTCTAGAGAAAAGGGACCT+TGG 0.606163 3_1:+8446320 None:intergenic
TCGGGAAGTGGTAGAACTGA+GGG 0.606371 3_1:-8446251 Msa0347430:CDS
GAAGACGATCAAGGCACTCA+TGG 0.606644 3_1:-8443816 Msa0347430:CDS
TACACTTGTAGTAACTTCGA+GGG 0.609634 3_1:+8444234 None:intergenic
CAATTATATCCATCCTCCGA+CGG 0.616534 3_1:+8444296 None:intergenic
TATGGACAGAAAGTTGTCAA+AGG 0.617805 3_1:-8443519 Msa0347430:CDS
CATGGTGAACCACAGGGTGG+TGG 0.620090 3_1:-8444044 Msa0347430:CDS
AATGCTTCTAACGCAGCTCA+AGG 0.620924 3_1:-8443208 Msa0347430:CDS
AAAACCCAGCCTTAAGATGG+AGG 0.621674 3_1:+8444429 None:intergenic
GAAGAGCAAGCAGATGAAGA+GGG 0.623139 3_1:-8444368 Msa0347430:CDS
CCATACTTGACTATACCACC+TGG 0.626430 3_1:-8446050 Msa0347430:CDS
ATTCATTCATTCATACACAA+AGG 0.626676 3_1:-8447182 Msa0347430:five_prime_UTR
GTGACTGCTGGAACGAGCAG+CGG 0.626891 3_1:+8443240 None:intergenic
GAACTGGATTTAATGCCCCA+AGG 0.631607 3_1:-8446130 Msa0347430:CDS
TGGTGTTGGTGGTACTCCGT+CGG 0.633544 3_1:-8444312 Msa0347430:CDS
ACTACAAGTGCACCAATGCA+GGG 0.634462 3_1:-8443351 Msa0347430:CDS
AATGGGATTCATGTTACCAA+AGG 0.635351 3_1:-8442927 Msa0347430:CDS
CTTCCCGGGAGACAGCAGCT+AGG 0.636920 3_1:-8443094 Msa0347430:CDS
CTTGAATGAAAGAAAATCAG+CGG 0.637570 3_1:+8442626 None:intergenic
TCTGTGATCACTACATACGA+GGG 0.638313 3_1:-8443283 Msa0347430:CDS
ACAGTGAGGTTTGAATGGCT+GGG 0.640424 3_1:-8446394 Msa0347430:exon
ATCTGTGATCACTACATACG+AGG 0.641100 3_1:-8443284 Msa0347430:CDS
TCATTAGGTTATGATGCGGA+AGG 0.642548 3_1:-8443786 Msa0347430:CDS
TGGACTGGTTACCGTACCCG+GGG 0.645559 3_1:+8443925 None:intergenic
TCAAAGGAAATCCCAACCCA+AGG 0.645747 3_1:-8443503 Msa0347430:intron
TGTTGTAGGCTTGAAAGCGA+AGG 0.648946 3_1:+8445279 None:intergenic
GAGAACAAGTCGAGTTCGCG+GGG 0.652302 3_1:-8446179 Msa0347430:CDS
TCAATCTCAAAGAGTTGATG+CGG 0.655003 3_1:-8444480 Msa0347430:CDS
TCCTCGATGATGGTTATCGG+TGG 0.657777 3_1:-8443548 Msa0347430:CDS
GCTCTCTGTATTCAACCTTG+GGG 0.658042 3_1:+8446115 None:intergenic
CCTGAACATGGTGAACCACA+GGG 0.659823 3_1:-8444050 Msa0347430:CDS
AACGGAGATTATCTATAAGG+GGG 0.660151 3_1:-8444156 Msa0347430:CDS
GTGCACTGTAAGGAAGCATG+TGG 0.665453 3_1:-8443329 Msa0347430:CDS
CAAGTGGACAATCCTGAACA+TGG 0.665803 3_1:-8444062 Msa0347430:CDS
ACCAAAGGGAGAACCAAATG+TGG 0.665868 3_1:-8442912 Msa0347430:CDS
AGGTTGAACGAACCAAGTGA+AGG 0.667258 3_1:+8443115 None:intergenic
AACAAGTCGAGTTCGCGGGG+TGG 0.672658 3_1:-8446176 Msa0347430:CDS
TTCGGGAAGTGGTAGAACTG+AGG 0.674120 3_1:-8446252 Msa0347430:CDS
GGCTGGGCTAATGTACAGAA+GGG 0.678675 3_1:-8444008 Msa0347430:CDS
TGTATCATTAGGTTATGATG+CGG 0.683277 3_1:-8443790 Msa0347430:CDS
TGTTGGTGGTACTCCGTCGG+AGG 0.688624 3_1:-8444309 Msa0347430:CDS
TCACCGCCACCACCACCCTG+TGG 0.689260 3_1:+8444035 None:intergenic
TGACAACCTTGAAGCAACGT+CGG 0.689656 3_1:-8443955 Msa0347430:CDS
CAGCAGCTAGGTCATCCACA+TGG 0.696825 3_1:-8443082 Msa0347430:CDS
CTGATGATAATTCTGAGCTG+CGG 0.709325 3_1:+8445353 None:intergenic
AGTGTAGTAGGACTAAGACC+AGG 0.720135 3_1:+8446032 None:intergenic
TTCATGCCGAAGAAGCCATG+TGG 0.726348 3_1:+8443067 None:intergenic
GTAGTAGGACTAAGACCAGG+TGG 0.737529 3_1:+8446035 None:intergenic
GACTGCTGGAACGAGCAGCG+GGG 0.738619 3_1:+8443242 None:intergenic
GAACCATCTCAAGTTCACAA+CGG 0.751840 3_1:-8443145 Msa0347430:CDS
GACGCTAATCCTGAACGCGG+CGG 0.752010 3_1:-8442890 Msa0347430:CDS
GCCACCGATAACCATCATCG+AGG 0.756754 3_1:+8443547 None:intergenic
GTGGACGCTAATCCTGAACG+CGG 0.765043 3_1:-8442893 Msa0347430:CDS
GAACATGGTGAACCACAGGG+TGG 0.819556 3_1:-8444047 Msa0347430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAAAAATAAAAAAAAA+CGG + chr3_1:8444185-8444204 None:intergenic 0.0%
!!! AAAAAAAAAAAGCTTTTTTT+TGG + chr3_1:8443117-8443136 None:intergenic 10.0%
!!! AAAAAAAAGCTTTTTTTTTT+TGG - chr3_1:8443116-8443135 Msa0347430:CDS 10.0%
!!! AAAAAAAGCTTTTTTTTTTT+GGG - chr3_1:8443117-8443136 Msa0347430:CDS 10.0%
!!! TTTTTTACCAAAAAATAAAA+AGG + chr3_1:8446129-8446148 None:intergenic 10.0%
!!! TTTTTTGGTTGATATATTTA+AGG - chr3_1:8442966-8442985 Msa0347430:CDS 15.0%
!!! TAAACAAATCATGTTTTTAT+AGG + chr3_1:8443185-8443204 None:intergenic 15.0%
!!! TTTTTTGAAAATTTTAAGGT+TGG - chr3_1:8443209-8443228 Msa0347430:CDS 15.0%
!!! AACAAAATCATTTTTTTTGT+TGG - chr3_1:8443291-8443310 Msa0347430:CDS 15.0%
!!! TTAAGGTTTTATGATTATTA+CGG - chr3_1:8444036-8444055 Msa0347430:CDS 15.0%
!!! AGATTTATATATTTTTCTTG+TGG - chr3_1:8445249-8445268 Msa0347430:CDS 15.0%
!! AAATGATAGAACAAAAGAAT+CGG + chr3_1:8442769-8442788 None:intergenic 20.0%
!!! TTGTTTGTTTGATGATTTTA+AGG - chr3_1:8442925-8442944 Msa0347430:CDS 20.0%
!!! TTTGTTACATTTTGTGAAAT+GGG - chr3_1:8443006-8443025 Msa0347430:CDS 20.0%
!!! TTTTTTTTTTGTTTGGTCTT+AGG - chr3_1:8443034-8443053 Msa0347430:CDS 20.0%
!!! TTTTGTTGATGAAATGAAAT+TGG - chr3_1:8443338-8443357 Msa0347430:CDS 20.0%
!! CATAAAAATTTGATCTTTGT+AGG - chr3_1:8443399-8443418 Msa0347430:intron 20.0%
!!! TATTTTTTAAATCCTATGCA+TGG - chr3_1:8444193-8444212 Msa0347430:CDS 20.0%
!!! TGTAATTTTAATGTTGCAAT+TGG - chr3_1:8444236-8444255 Msa0347430:CDS 20.0%
!! CAAGAAAAATCTAAACATAA+TGG - chr3_1:8444506-8444525 Msa0347430:CDS 20.0%
!! TTAGAATGAATGATAGTTTA+AGG + chr3_1:8444700-8444719 None:intergenic 20.0%
!!! CTCTAAAGTATATGAAAAAT+TGG - chr3_1:8444783-8444802 Msa0347430:intron 20.0%
!! TGTAGTTTATGTTAAAATCA+TGG + chr3_1:8445158-8445177 None:intergenic 20.0%
!!! TTTTAACATAAACTACACTT+TGG - chr3_1:8445161-8445180 Msa0347430:intron 20.0%
!! ATATAAATCTAGTGCATATT+TGG + chr3_1:8445239-8445258 None:intergenic 20.0%
!!! AGAATAAAATTTTACATGTG+AGG + chr3_1:8447031-8447050 None:intergenic 20.0%
!! TCTCTTACATATTCTTTAAA+AGG - chr3_1:8447048-8447067 Msa0347430:five_prime_UTR 20.0%
! TTTGTGTATGAATGAATGAA+TGG + chr3_1:8442650-8442669 None:intergenic 25.0%
! ATTCATTCATTCATACACAA+AGG - chr3_1:8442649-8442668 Msa0347430:three_prime_UTR 25.0%
! TGTTTCAAGATTAACACAAA+AGG - chr3_1:8442697-8442716 Msa0347430:three_prime_UTR 25.0%
!!! TTTTGTTCTATCATTTCTAG+TGG - chr3_1:8442773-8442792 Msa0347430:three_prime_UTR 25.0%
! TTTACAATTCTTCACTTCTT+AGG - chr3_1:8442841-8442860 Msa0347430:CDS 25.0%
!!! TTTGATGATTTTAAGGATTG+TGG - chr3_1:8442932-8442951 Msa0347430:CDS 25.0%
!!! GTGGAACAATGTTTTTTTTT+TGG - chr3_1:8442951-8442970 Msa0347430:CDS 25.0%
!!! GTTTGTTACATTTTGTGAAA+TGG - chr3_1:8443005-8443024 Msa0347430:CDS 25.0%
! AAAACGCTAAAATGAATCAT+AGG + chr3_1:8443253-8443272 None:intergenic 25.0%
! AATTGGAGTTCTGTAATATT+TGG - chr3_1:8443355-8443374 Msa0347430:CDS 25.0%
! AAATTTGATCTTTGTAGGTT+AGG - chr3_1:8443404-8443423 Msa0347430:intron 25.0%
! TCAATTCTTCAATTTGAACA+AGG - chr3_1:8444270-8444289 Msa0347430:CDS 25.0%
! CAATTCTTCAATTTGAACAA+GGG - chr3_1:8444271-8444290 Msa0347430:CDS 25.0%
! TTATGAATCTGTCTAATTTC+AGG - chr3_1:8444403-8444422 Msa0347430:CDS 25.0%
! AAGTTTCCATTTGTTTCAAA+TGG - chr3_1:8444449-8444468 Msa0347430:CDS 25.0%
!! TTCTTTTACGATTGTAGTTT+TGG - chr3_1:8444643-8444662 Msa0347430:intron 25.0%
! TAGTTTAAGGACTAAATTGA+TGG + chr3_1:8444687-8444706 None:intergenic 25.0%
!! TACTTTAGAGACTAAATTGA+CGG + chr3_1:8444773-8444792 None:intergenic 25.0%
! ATGTAGTGACTAAATTAAAG+AGG - chr3_1:8444885-8444904 Msa0347430:intron 25.0%
! TGTAGTGACTAAATTAAAGA+GGG - chr3_1:8444886-8444905 Msa0347430:intron 25.0%
! ATTTACTTCTCAAATCAACA+TGG - chr3_1:8444952-8444971 Msa0347430:intron 25.0%
! ATGTAAACTTGAATTGTGTA+CGG + chr3_1:8445021-8445040 None:intergenic 25.0%
! AGTTTATGTTAAAATCATGG+TGG + chr3_1:8445155-8445174 None:intergenic 25.0%
! TTGGAACTTCAATAAAAACA+CGG - chr3_1:8445180-8445199 Msa0347430:intron 25.0%
! GGATATAATTGGAGAAAATA+TGG - chr3_1:8445547-8445566 Msa0347430:intron 25.0%
! TATAGATAATCTCCGTTATA+TGG + chr3_1:8445672-8445691 None:intergenic 25.0%
!! TATAACGGAGATTATCTATA+AGG - chr3_1:8445672-8445691 Msa0347430:intron 25.0%
!! ATAACGGAGATTATCTATAA+GGG - chr3_1:8445673-8445692 Msa0347430:intron 25.0%
! TACTTCATACTATTCATTGT+TGG - chr3_1:8446093-8446112 Msa0347430:CDS 25.0%
! AAAATATAGCTGAATGTTTC+TGG - chr3_1:8446440-8446459 Msa0347430:intron 25.0%
! CATTATTCTTCACATGTTAA+AGG - chr3_1:8447167-8447186 Msa0347430:five_prime_UTR 25.0%
TAACAAGAAAAAACCACACA+AGG + chr3_1:8442810-8442829 None:intergenic 30.0%
!!! GGTCGTGTTTTTTTTTTGTT+TGG - chr3_1:8443027-8443046 Msa0347430:CDS 30.0%
!!! TTTTTTGGTTCATTGCAACA+AGG + chr3_1:8443102-8443121 None:intergenic 30.0%
!! TTCATTTTAGCGTTTTGTTG+AGG - chr3_1:8443257-8443276 Msa0347430:CDS 30.0%
GATGAAAATCTTGCACTTAA+TGG - chr3_1:8443463-8443482 Msa0347430:intron 30.0%
! ATAACTTGTATCGCTCAATT+GGG + chr3_1:8443626-8443645 None:intergenic 30.0%
TTATTCTCTCAACAATAGCT+AGG + chr3_1:8444092-8444111 None:intergenic 30.0%
TGCTGATGCAATTTAAATCA+TGG - chr3_1:8444123-8444142 Msa0347430:CDS 30.0%
TGCAATTTAAATCATGGTCA+CGG - chr3_1:8444129-8444148 Msa0347430:CDS 30.0%
TGTTGCAATTGGATAATCTA+TGG - chr3_1:8444247-8444266 Msa0347430:CDS 30.0%
! ATGTTGCCATTTGAAACAAA+TGG + chr3_1:8444458-8444477 None:intergenic 30.0%
!! TGACGGATTTCATATACTTT+AGG + chr3_1:8444756-8444775 None:intergenic 30.0%
TTAGTCCTTCACATCTTAAT+AGG - chr3_1:8444811-8444830 Msa0347430:intron 30.0%
TAGTCCTTCACATCTTAATA+GGG - chr3_1:8444812-8444831 Msa0347430:intron 30.0%
GTAGTGACTAAATTAAAGAG+GGG - chr3_1:8444887-8444906 Msa0347430:intron 30.0%
TAGTGACTAAATTAAAGAGG+GGG - chr3_1:8444888-8444907 Msa0347430:intron 30.0%
TGTATTCATCTGCAAATTGA+AGG + chr3_1:8445287-8445306 None:intergenic 30.0%
AAAAGACAATTCCACACAAT+TGG - chr3_1:8445441-8445460 Msa0347430:intron 30.0%
! CGTTCTACTTTCTTTTTAAC+CGG + chr3_1:8445637-8445656 None:intergenic 30.0%
TAACGGAGATTATCTATAAG+GGG - chr3_1:8445674-8445693 Msa0347430:intron 30.0%
!!! ATTTTGAGTTTGCAGATTGT+TGG + chr3_1:8445929-8445948 None:intergenic 30.0%
AACAATCTGCAAACTCAAAA+TGG - chr3_1:8445928-8445947 Msa0347430:intron 30.0%
! TACATTTTCTAACGAAGAAG+AGG - chr3_1:8445993-8446012 Msa0347430:intron 30.0%
TGTATCATTAGGTTATGATG+CGG - chr3_1:8446041-8446060 Msa0347430:CDS 30.0%
ATGAATCAGAGTCTAAAAGA+AGG - chr3_1:8446070-8446089 Msa0347430:CDS 30.0%
ATACTATTCATTGTTGGTGT+TGG - chr3_1:8446099-8446118 Msa0347430:CDS 30.0%
!!! TGGCACTCCTTTTTATTTTT+TGG - chr3_1:8446119-8446138 Msa0347430:CDS 30.0%
!! AACGAACAACTTATTTTCTC+AGG - chr3_1:8446172-8446191 Msa0347430:CDS 30.0%
!! AACTTATTTTCTCAGGAAAC+TGG - chr3_1:8446179-8446198 Msa0347430:CDS 30.0%
!!! AGCTATATTTTGACACAATG+GGG + chr3_1:8446431-8446450 None:intergenic 30.0%
!!! CAGCTATATTTTGACACAAT+GGG + chr3_1:8446432-8446451 None:intergenic 30.0%
!!! TCAGCTATATTTTGACACAA+TGG + chr3_1:8446433-8446452 None:intergenic 30.0%
ATGTAGTGATCACAGATTTA+AGG + chr3_1:8446544-8446563 None:intergenic 30.0%
TGTAATGATCAGACATACAT+AGG - chr3_1:8447111-8447130 Msa0347430:five_prime_UTR 30.0%
CTTGAATGAAAGAAAATCAG+CGG + chr3_1:8447208-8447227 None:intergenic 30.0%
! AGAGACCCAGATACAATTTT+GGG - chr3_1:8442722-8442741 Msa0347430:three_prime_UTR 35.0%
!! TGTTCTATCATTTCTAGTGG+TGG - chr3_1:8442776-8442795 Msa0347430:three_prime_UTR 35.0%
!! TAGGTGTTTTTGATACAGTG+AGG - chr3_1:8443423-8443442 Msa0347430:intron 35.0%
TTGATACAGTGAGGTTTGAA+TGG - chr3_1:8443432-8443451 Msa0347430:intron 35.0%
ATCTTGCACTTAATGGTGAT+TGG - chr3_1:8443470-8443489 Msa0347430:intron 35.0%
TCTTGCACTTAATGGTGATT+GGG - chr3_1:8443471-8443490 Msa0347430:intron 35.0%
TTCTAGCAGTCTAGAGAAAA+GGG + chr3_1:8443521-8443540 None:intergenic 35.0%
! GATAACTTGTATCGCTCAAT+TGG + chr3_1:8443627-8443646 None:intergenic 35.0%
! GGAGAATCTAAAAGTGTAGT+AGG + chr3_1:8443814-8443833 None:intergenic 35.0%
AATGAATTTGCAAGGAACAC+GGG + chr3_1:8443835-8443854 None:intergenic 35.0%
CAATGAATTTGCAAGGAACA+CGG + chr3_1:8443836-8443855 None:intergenic 35.0%
AACTCACCAATGAATTTGCA+AGG + chr3_1:8443843-8443862 None:intergenic 35.0%
!! TAATGGATTGTGCTTCATCT+AGG + chr3_1:8443965-8443984 None:intergenic 35.0%
TTATGCGTCATGAGCAATAA+TGG + chr3_1:8443982-8444001 None:intergenic 35.0%
GACGCATAACATTTCATCAT+AGG - chr3_1:8443993-8444012 Msa0347430:CDS 35.0%
TAGGATAGACAATAGCATGT+AGG - chr3_1:8444012-8444031 Msa0347430:CDS 35.0%
AGGATAGACAATAGCATGTA+GGG - chr3_1:8444013-8444032 Msa0347430:CDS 35.0%
TTAAATACACAGCCATGCAT+AGG + chr3_1:8444208-8444227 None:intergenic 35.0%
AGACAGATTCATAACTCAGT+AGG + chr3_1:8444397-8444416 None:intergenic 35.0%
AATGGAAACTTTCCTGTTGT+TGG + chr3_1:8444440-8444459 None:intergenic 35.0%
!! AATAGGGTGGACTAAATTGA+CGG - chr3_1:8444828-8444847 Msa0347430:intron 35.0%
!!! TGACGGGTTTTATATACTTG+AGG - chr3_1:8444845-8444864 Msa0347430:intron 35.0%
TAACTGCAATAACTTGACTG+TGG + chr3_1:8444992-8445011 None:intergenic 35.0%
GCATCCATATATCATTGCTT+GGG + chr3_1:8445092-8445111 None:intergenic 35.0%
TGCATCCATATATCATTGCT+TGG + chr3_1:8445093-8445112 None:intergenic 35.0%
TGGATGCATGTTTAGATTGA+AGG - chr3_1:8445105-8445124 Msa0347430:intron 35.0%
!! TCAATCTCAAAGAGTTGATG+CGG - chr3_1:8445351-8445370 Msa0347430:CDS 35.0%
! TGTGTGGAATTGTCTTTTTG+AGG + chr3_1:8445439-8445458 None:intergenic 35.0%
ATATGGCCAAAAGCAAGTTA+AGG - chr3_1:8445564-8445583 Msa0347430:intron 35.0%
TATGGCCAAAAGCAAGTTAA+GGG - chr3_1:8445565-8445584 Msa0347430:intron 35.0%
TACACTTGTAGTAACTTCGA+GGG + chr3_1:8445600-8445619 None:intergenic 35.0%
GTGTACTCATTCAAATTGTC+CGG - chr3_1:8445615-8445634 Msa0347430:intron 35.0%
AAAGTAGAACGTTCTCATGA+GGG - chr3_1:8445646-8445665 Msa0347430:intron 35.0%
AACGGAGATTATCTATAAGG+GGG - chr3_1:8445675-8445694 Msa0347430:intron 35.0%
! ACTCATGGTAGTGTATCATT+AGG - chr3_1:8446030-8446049 Msa0347430:CDS 35.0%
!! GTTGTTCGTTTTGAATATCG+TGG + chr3_1:8446162-8446181 None:intergenic 35.0%
! ATATCCTCGATGATGGTTAT+CGG - chr3_1:8446280-8446299 Msa0347430:CDS 35.0%
TATGGACAGAAAGTTGTCAA+AGG - chr3_1:8446312-8446331 Msa0347430:CDS 35.0%
TCGATAAGAATGACTACCTT+GGG + chr3_1:8446347-8446366 None:intergenic 35.0%
ATCGATAAGAATGACTACCT+TGG + chr3_1:8446348-8446367 None:intergenic 35.0%
!! ATAGCTGAATGTTTCTGGTT+TGG - chr3_1:8446445-8446464 Msa0347430:intron 35.0%
!! TAGCTGAATGTTTCTGGTTT+GGG - chr3_1:8446446-8446465 Msa0347430:intron 35.0%
CATGAATCCCATTTCATTTG+CGG + chr3_1:8446897-8446916 None:intergenic 35.0%
AATGGGATTCATGTTACCAA+AGG - chr3_1:8446904-8446923 Msa0347430:intron 35.0%
ATGGGATTCATGTTACCAAA+GGG - chr3_1:8446905-8446924 Msa0347430:intron 35.0%
!! ATGAGCCATTTTGCATGTTA+AGG + chr3_1:8446967-8446986 None:intergenic 35.0%
ATTATGAATCACATGCCTCT+TGG - chr3_1:8447004-8447023 Msa0347430:five_prime_UTR 35.0%
!!! CGCTGATTTTCTTTCATTCA+AGG - chr3_1:8447206-8447225 Msa0347430:five_prime_UTR 35.0%
! GAGAGACCCAGATACAATTT+TGG - chr3_1:8442721-8442740 Msa0347430:three_prime_UTR 40.0%
!! ACCCAGATACAATTTTGGGT+CGG - chr3_1:8442726-8442745 Msa0347430:three_prime_UTR 40.0%
!! ATACAATTTTGGGTCGGGTT+CGG - chr3_1:8442732-8442751 Msa0347430:three_prime_UTR 40.0%
CTTGCACTTAATGGTGATTG+GGG - chr3_1:8443472-8443491 Msa0347430:intron 40.0%
CTTCTAGCAGTCTAGAGAAA+AGG + chr3_1:8443522-8443541 None:intergenic 40.0%
ACGACCGAATTCAGAACATT+CGG - chr3_1:8443561-8443580 Msa0347430:CDS 40.0%
! CTTCCCGAATGTTCTGAATT+CGG + chr3_1:8443568-8443587 None:intergenic 40.0%
AATTCAGAACATTCGGGAAG+TGG - chr3_1:8443568-8443587 Msa0347430:CDS 40.0%
GATAGAATTGCTGCTAGAAC+TGG - chr3_1:8443685-8443704 Msa0347430:intron 40.0%
TGCTCTCTGTATTCAACCTT+GGG + chr3_1:8443720-8443739 None:intergenic 40.0%
ATGCTCTCTGTATTCAACCT+TGG + chr3_1:8443721-8443740 None:intergenic 40.0%
CGTGTTCCTTGCAAATTCAT+TGG - chr3_1:8443834-8443853 Msa0347430:CDS 40.0%
! GAGAAAGCACATTTGTGTTG+TGG - chr3_1:8443882-8443901 Msa0347430:CDS 40.0%
GACAATAGCATGTAGGGTTA+AGG - chr3_1:8444019-8444038 Msa0347430:CDS 40.0%
CAGATTCATAACTCAGTAGG+AGG + chr3_1:8444394-8444413 None:intergenic 40.0%
AACTTTCCTGTTGTTGGAGA+TGG + chr3_1:8444434-8444453 None:intergenic 40.0%
CTGATGATAATTCTGAGCTG+CGG + chr3_1:8444481-8444500 None:intergenic 40.0%
TTCAAGCCTACAACAGATTC+AGG - chr3_1:8444560-8444579 Msa0347430:intron 40.0%
TCAAGCCTACAACAGATTCA+GGG - chr3_1:8444561-8444580 Msa0347430:intron 40.0%
CCAGCACCTTGATAAAAAGA+GGG + chr3_1:8444587-8444606 None:intergenic 40.0%
ACCAGCACCTTGATAAAAAG+AGG + chr3_1:8444588-8444607 None:intergenic 40.0%
TCCTTCACATCTTAATAGGG+TGG - chr3_1:8444815-8444834 Msa0347430:intron 40.0%
TCCACCCTATTAAGATGTGA+AGG + chr3_1:8444819-8444838 None:intergenic 40.0%
!! ATAGGGTGGACTAAATTGAC+GGG - chr3_1:8444829-8444848 Msa0347430:intron 40.0%
CATATATCATTGCTTGGGCA+TGG + chr3_1:8445087-8445106 None:intergenic 40.0%
CATGCCCAAGCAATGATATA+TGG - chr3_1:8445085-8445104 Msa0347430:intron 40.0%
! CTAGTGCATATTTGGAATCG+CGG + chr3_1:8445231-8445250 None:intergenic 40.0%
TGAAGCTTCAACACCATGAA+GGG + chr3_1:8445329-8445348 None:intergenic 40.0%
CAAAAGTAGCCTCCATCTTA+AGG - chr3_1:8445393-8445412 Msa0347430:CDS 40.0%
!! GTGGAATTGTCTTTTTGAGG+TGG + chr3_1:8445436-8445455 None:intergenic 40.0%
CAATTATATCCATCCTCCGA+CGG + chr3_1:8445538-8445557 None:intergenic 40.0%
GTACACTTGTAGTAACTTCG+AGG + chr3_1:8445601-8445620 None:intergenic 40.0%
GAAAGTAGAACGTTCTCATG+AGG - chr3_1:8445645-8445664 Msa0347430:intron 40.0%
TTCTCATGAGGGCCATATAA+CGG - chr3_1:8445657-8445676 Msa0347430:intron 40.0%
GTACAGAAGGGAAATATAGC+TGG - chr3_1:8445835-8445854 Msa0347430:intron 40.0%
ATATAGCTGGAGCTGGTAAT+TGG - chr3_1:8445848-8445867 Msa0347430:intron 40.0%
!! GGTACTACTCACATTGATTC+AGG - chr3_1:8445949-8445968 Msa0347430:intron 40.0%
TCATTAGGTTATGATGCGGA+AGG - chr3_1:8446045-8446064 Msa0347430:CDS 40.0%
GTAGTCTGAACAACAACTCT+AGG + chr3_1:8446249-8446268 None:intergenic 40.0%
ATCGAGGATATCTACTTCAC+TGG + chr3_1:8446271-8446290 None:intergenic 40.0%
GAAGTAGATATCCTCGATGA+TGG - chr3_1:8446273-8446292 Msa0347430:CDS 40.0%
AAGAATGACTACCTTGGGTT+GGG + chr3_1:8446342-8446361 None:intergenic 40.0%
TAAGAATGACTACCTTGGGT+TGG + chr3_1:8446343-8446362 None:intergenic 40.0%
!! AGCTGAATGTTTCTGGTTTG+GGG - chr3_1:8446447-8446466 Msa0347430:intron 40.0%
ATCTGTGATCACTACATACG+AGG - chr3_1:8446547-8446566 Msa0347430:intron 40.0%
TCTGTGATCACTACATACGA+GGG - chr3_1:8446548-8446567 Msa0347430:intron 40.0%
ATGGTTCAGGTCTATGCATA+TGG + chr3_1:8446673-8446692 None:intergenic 40.0%
TTGTGAACTTGAGATGGTTC+AGG + chr3_1:8446686-8446705 None:intergenic 40.0%
GAACCATCTCAAGTTCACAA+CGG - chr3_1:8446686-8446705 Msa0347430:intron 40.0%
! TGCATCATGAATGGGTTCAT+AGG + chr3_1:8446857-8446876 None:intergenic 40.0%
GTTGTTGCTGCATCATGAAT+GGG + chr3_1:8446865-8446884 None:intergenic 40.0%
TGTTGTTGCTGCATCATGAA+TGG + chr3_1:8446866-8446885 None:intergenic 40.0%
! TTTTACATGTGAGGTCCAAG+AGG + chr3_1:8447022-8447041 None:intergenic 40.0%
CCCGACCCAAAATTGTATCT+GGG + chr3_1:8442730-8442749 None:intergenic 45.0%
!! CCCAGATACAATTTTGGGTC+GGG - chr3_1:8442727-8442746 Msa0347430:three_prime_UTR 45.0%
ACCCGACCCAAAATTGTATC+TGG + chr3_1:8442731-8442750 None:intergenic 45.0%
!! TACAATTTTGGGTCGGGTTC+GGG - chr3_1:8442733-8442752 Msa0347430:three_prime_UTR 45.0%
TACAGTGAGGTTTGAATGGC+TGG - chr3_1:8443436-8443455 Msa0347430:intron 45.0%
ACAGTGAGGTTTGAATGGCT+GGG - chr3_1:8443437-8443456 Msa0347430:intron 45.0%
AGTCTAGAGAAAAGGGACCT+TGG + chr3_1:8443514-8443533 None:intergenic 45.0%
CGACCGAATTCAGAACATTC+GGG - chr3_1:8443562-8443581 Msa0347430:CDS 45.0%
TGTATCGCTCAATTGGGTAC+CGG + chr3_1:8443620-8443639 None:intergenic 45.0%
GAACTGGATTTAATGCCCCA+AGG - chr3_1:8443701-8443720 Msa0347430:intron 45.0%
GCTCTCTGTATTCAACCTTG+GGG + chr3_1:8443719-8443738 None:intergenic 45.0%
CCAGGTGGTATAGTCAAGTA+TGG + chr3_1:8443784-8443803 None:intergenic 45.0%
CCATACTTGACTATACCACC+TGG - chr3_1:8443781-8443800 Msa0347430:CDS 45.0%
AGTGTAGTAGGACTAAGACC+AGG + chr3_1:8443802-8443821 None:intergenic 45.0%
GATTATTACGGTCGCAGTGA+CGG - chr3_1:8444048-8444067 Msa0347430:CDS 45.0%
GGAGACATCCAAAACCAAGA+TGG - chr3_1:8444150-8444169 Msa0347430:CDS 45.0%
ATCCAAAACCAAGATGGTCG+TGG - chr3_1:8444156-8444175 Msa0347430:CDS 45.0%
TGTTGTAGGCTTGAAAGCGA+AGG + chr3_1:8444555-8444574 None:intergenic 45.0%
! TCAGGGCCCTCTTTTTATCA+AGG - chr3_1:8444578-8444597 Msa0347430:intron 45.0%
! CCCTCTTTTTATCAAGGTGC+TGG - chr3_1:8444584-8444603 Msa0347430:intron 45.0%
AAGAGGGGGTGATAGTTTGA+TGG - chr3_1:8444902-8444921 Msa0347430:intron 45.0%
CTTTCTCAGCAATCCCTTCA+TGG - chr3_1:8445313-8445332 Msa0347430:CDS 45.0%
CTGAAGCTTCAACACCATGA+AGG + chr3_1:8445330-8445349 None:intergenic 45.0%
AAAACCCAGCCTTAAGATGG+AGG + chr3_1:8445405-8445424 None:intergenic 45.0%
CAGAAAACCCAGCCTTAAGA+TGG + chr3_1:8445408-8445427 None:intergenic 45.0%
TGCTTGCTCTTCCAATTGTG+TGG + chr3_1:8445455-8445474 None:intergenic 45.0%
GAAGAGCAAGCAGATGAAGA+GGG - chr3_1:8445463-8445482 Msa0347430:intron 45.0%
GAGGGAGAACAGAGAGTTAA+CGG - chr3_1:8445481-8445500 Msa0347430:intron 45.0%
CGTCGGAGGATGGATATAAT+TGG - chr3_1:8445536-8445555 Msa0347430:intron 45.0%
!!! CGCTACCCTTAACTTGCTTT+TGG + chr3_1:8445573-8445592 None:intergenic 45.0%
CAAGTGGACAATCCTGAACA+TGG - chr3_1:8445769-8445788 Msa0347430:intron 45.0%
AAGGGAAATATAGCTGGAGC+TGG - chr3_1:8445841-8445860 Msa0347430:intron 45.0%
TGACAACCTTGAAGCAACGT+CGG - chr3_1:8445876-8445895 Msa0347430:intron 45.0%
GAGTTTGCAGATTGTTGGAC+TGG + chr3_1:8445924-8445943 None:intergenic 45.0%
!! CATTGATTCAGGAGATGCAG+TGG - chr3_1:8445960-8445979 Msa0347430:intron 45.0%
GAAGAAGAGGAAGACGATCA+AGG - chr3_1:8446006-8446025 Msa0347430:CDS 45.0%
GAATCATATGCCGAGATGAG+TGG - chr3_1:8446201-8446220 Msa0347430:CDS 45.0%
TCTAGTAGCTCCACTCATCT+CGG + chr3_1:8446214-8446233 None:intergenic 45.0%
TCAAAGGAAATCCCAACCCA+AGG - chr3_1:8446328-8446347 Msa0347430:CDS 45.0%
! GTCCCATCTGTCGAATTTTG+TGG - chr3_1:8446405-8446424 Msa0347430:five_prime_UTR 45.0%
GGCCACAAAATTCGACAGAT+GGG + chr3_1:8446410-8446429 None:intergenic 45.0%
TACTACAAGTGCACCAATGC+AGG - chr3_1:8446479-8446498 Msa0347430:intron 45.0%
ACTACAAGTGCACCAATGCA+GGG - chr3_1:8446480-8446499 Msa0347430:intron 45.0%
AATGCTTCTAACGCAGCTCA+AGG - chr3_1:8446623-8446642 Msa0347430:intron 45.0%
ATGCCGTTGTGAACTTGAGA+TGG + chr3_1:8446692-8446711 None:intergenic 45.0%
AGGTTGAACGAACCAAGTGA+AGG + chr3_1:8446719-8446738 None:intergenic 45.0%
AACCTTGCAATGTCGGGATT+GGG - chr3_1:8446800-8446819 Msa0347430:intron 45.0%
! AATGGGTTCATAGGCATTCC+AGG + chr3_1:8446848-8446867 None:intergenic 45.0%
ACCAAAGGGAGAACCAAATG+TGG - chr3_1:8446919-8446938 Msa0347430:intron 45.0%
!! TCCACATTTGGTTCTCCCTT+TGG + chr3_1:8446923-8446942 None:intergenic 45.0%
! TCAGGATTAGCGTCCACATT+TGG + chr3_1:8446935-8446954 None:intergenic 45.0%
!!! TATTTTTTTTGAAAATTTTA+AGG - chr3_1:8443205-8443224 Msa0347430:CDS 5.0%
!! AATTAATTATATATAGTTTA+GGG + chr3_1:8444729-8444748 None:intergenic 5.0%
!! TAATTAATTATATATAGTTT+AGG + chr3_1:8444730-8444749 None:intergenic 5.0%
GGTGGTTGAACTTCCTTGTG+TGG - chr3_1:8442794-8442813 Msa0347430:three_prime_UTR 50.0%
GTCTTCCTAGTCCAAGTCCA+AGG - chr3_1:8443494-8443513 Msa0347430:intron 50.0%
GAGAAAAGGGACCTTGGACT+TGG + chr3_1:8443508-8443527 None:intergenic 50.0%
TTCGGGAAGTGGTAGAACTG+AGG - chr3_1:8443579-8443598 Msa0347430:CDS 50.0%
TCGGGAAGTGGTAGAACTGA+GGG - chr3_1:8443580-8443599 Msa0347430:CDS 50.0%
GGTAGAACTGAGGGACAAGA+TGG - chr3_1:8443589-8443608 Msa0347430:CDS 50.0%
GAGGGACAAGATGGTGATTC+CGG - chr3_1:8443598-8443617 Msa0347430:CDS 50.0%
! GAACTCGACTTGTTCTCGGT+TGG + chr3_1:8443649-8443668 None:intergenic 50.0%
GTAGTAGGACTAAGACCAGG+TGG + chr3_1:8443799-8443818 None:intergenic 50.0%
! GACCACGACCATCTTGGTTT+TGG + chr3_1:8444161-8444180 None:intergenic 50.0%
AGTAGCCTCCATCTTAAGGC+TGG - chr3_1:8445397-8445416 Msa0347430:CDS 50.0%
GTAGCCTCCATCTTAAGGCT+GGG - chr3_1:8445398-8445417 Msa0347430:CDS 50.0%
GGAAGAGCAAGCAGATGAAG+AGG - chr3_1:8445462-8445481 Msa0347430:intron 50.0%
GAGAGTTAACGGAGACTCGT+TGG - chr3_1:8445492-8445511 Msa0347430:intron 50.0%
!!! AGGAGGTTTTGGGTGGTTGT+GGG + chr3_1:8445701-8445720 None:intergenic 50.0%
TCCTCATGCTGACATGCAAG+TGG - chr3_1:8445753-8445772 Msa0347430:intron 50.0%
TCCACTTGCATGTCAGCATG+AGG + chr3_1:8445757-8445776 None:intergenic 50.0%
TCCTGAACATGGTGAACCAC+AGG - chr3_1:8445780-8445799 Msa0347430:intron 50.0%
CCTGAACATGGTGAACCACA+GGG - chr3_1:8445781-8445800 Msa0347430:intron 50.0%
TCTGTACATTAGCCCAGCCT+AGG + chr3_1:8445822-8445841 None:intergenic 50.0%
AGGCTGGGCTAATGTACAGA+AGG - chr3_1:8445822-8445841 Msa0347430:intron 50.0%
GGCTGGGCTAATGTACAGAA+GGG - chr3_1:8445823-8445842 Msa0347430:intron 50.0%
! GAAGACGATCAAGGCACTCA+TGG - chr3_1:8446015-8446034 Msa0347430:CDS 50.0%
AACAACTCTAGGCTCGCGAA+TGG + chr3_1:8446238-8446257 None:intergenic 50.0%
! TCCTCGATGATGGTTATCGG+TGG - chr3_1:8446283-8446302 Msa0347430:CDS 50.0%
! TCGATGATGGTTATCGGTGG+CGG - chr3_1:8446286-8446305 Msa0347430:CDS 50.0%
!! GGTTATCGGTGGCGGAAATA+TGG - chr3_1:8446294-8446313 Msa0347430:CDS 50.0%
GGGCCACAAAATTCGACAGA+TGG + chr3_1:8446411-8446430 None:intergenic 50.0%
!! ATGTTTCTGGTTTGGGGTGC+AGG - chr3_1:8446453-8446472 Msa0347430:intron 50.0%
! GTGCACTGTAAGGAAGCATG+TGG - chr3_1:8446502-8446521 Msa0347430:intron 50.0%
! ATTCGCATTGACGTGACTGC+TGG + chr3_1:8446606-8446625 None:intergenic 50.0%
CTCAAGTTCACAACGGCATG+AGG - chr3_1:8446693-8446712 Msa0347430:intron 50.0%
! CTTGGTTCGTTCAACCTTCC+CGG - chr3_1:8446722-8446741 Msa0347430:intron 50.0%
! TTGGTTCGTTCAACCTTCCC+GGG - chr3_1:8446723-8446742 Msa0347430:intron 50.0%
GGTCATCCACATGGCTTCTT+CGG - chr3_1:8446758-8446777 Msa0347430:intron 50.0%
TTCATGCCGAAGAAGCCATG+TGG + chr3_1:8446767-8446786 None:intergenic 50.0%
CCTGTCGAACCTTGCAATGT+CGG - chr3_1:8446793-8446812 Msa0347430:intron 50.0%
CTGTCGAACCTTGCAATGTC+GGG - chr3_1:8446794-8446813 Msa0347430:intron 50.0%
GAACCTTGCAATGTCGGGAT+TGG - chr3_1:8446799-8446818 Msa0347430:intron 50.0%
GAAGCTTTGCTTGCGAGGAA+GGG + chr3_1:8446826-8446845 None:intergenic 50.0%
CAACGCGCCGCAAATGAAAT+GGG - chr3_1:8446887-8446906 Msa0347430:intron 50.0%
GGCGGCCTTAACATGCAAAA+TGG - chr3_1:8446959-8446978 Msa0347430:intron 50.0%
AGGGACCTTGGACTTGGACT+AGG + chr3_1:8443502-8443521 None:intergenic 55.0%
! CCGCGAACTCGACTTGTTCT+CGG + chr3_1:8443653-8443672 None:intergenic 55.0%
CCGAGAACAAGTCGAGTTCG+CGG - chr3_1:8443650-8443669 Msa0347430:intron 55.0%
CGAGAACAAGTCGAGTTCGC+GGG - chr3_1:8443651-8443670 Msa0347430:intron 55.0%
GAGAACAAGTCGAGTTCGCG+GGG - chr3_1:8443652-8443671 Msa0347430:intron 55.0%
AACGGTGACCACGACCATCT+TGG + chr3_1:8444167-8444186 None:intergenic 55.0%
GCACAGCCATCTCCAACAAC+AGG - chr3_1:8444425-8444444 Msa0347430:CDS 55.0%
GAGGGCCCTGAATCTGTTGT+AGG + chr3_1:8444569-8444588 None:intergenic 55.0%
! AACGGAGACTCGTTGGTTGC+TGG - chr3_1:8445499-8445518 Msa0347430:intron 55.0%
! GACTCGTTGGTTGCTGGTGT+TGG - chr3_1:8445505-8445524 Msa0347430:intron 55.0%
! TCGTTGGTTGCTGGTGTTGG+TGG - chr3_1:8445508-8445527 Msa0347430:intron 55.0%
!! TGGTGTTGGTGGTACTCCGT+CGG - chr3_1:8445519-8445538 Msa0347430:intron 55.0%
!!! GAGGAGGTTTTGGGTGGTTG+TGG + chr3_1:8445702-8445721 None:intergenic 55.0%
!!! GACTTGGAGGAGGTTTTGGG+TGG + chr3_1:8445708-8445727 None:intergenic 55.0%
!! GGCGACTTGGAGGAGGTTTT+GGG + chr3_1:8445711-8445730 None:intergenic 55.0%
CAAAACCTCCTCCAAGTCGC+CGG - chr3_1:8445710-8445729 Msa0347430:intron 55.0%
TACTTGACCCTATGCCCGAC+CGG + chr3_1:8445732-8445751 None:intergenic 55.0%
CCCTGTGGTTCACCATGTTC+AGG + chr3_1:8445784-8445803 None:intergenic 55.0%
GAACATGGTGAACCACAGGG+TGG - chr3_1:8445784-8445803 Msa0347430:intron 55.0%
TGACAGCCGACGTTGCTTCA+AGG + chr3_1:8445885-8445904 None:intergenic 55.0%
!! TTGGACTGGTTACCGTACCC+GGG + chr3_1:8445910-8445929 None:intergenic 55.0%
!! GTTGGACTGGTTACCGTACC+CGG + chr3_1:8445911-8445930 None:intergenic 55.0%
GCCACCGATAACCATCATCG+AGG + chr3_1:8446287-8446306 None:intergenic 55.0%
CCTTACAGTGCACCCTGCAT+TGG + chr3_1:8446495-8446514 None:intergenic 55.0%
CCAATGCAGGGTGCACTGTA+AGG - chr3_1:8446492-8446511 Msa0347430:intron 55.0%
GCAGCTCAAGGACAAGCTTC+TGG - chr3_1:8446635-8446654 Msa0347430:intron 55.0%
AACGGCATGAGGCCTTCACT+TGG - chr3_1:8446704-8446723 Msa0347430:intron 55.0%
ATGACCTAGCTGCTGTCTCC+CGG + chr3_1:8446744-8446763 None:intergenic 55.0%
CAGCAGCTAGGTCATCCACA+TGG - chr3_1:8446749-8446768 Msa0347430:intron 55.0%
CCGACATTGCAAGGTTCGAC+AGG + chr3_1:8446796-8446815 None:intergenic 55.0%
GGAAGCTTTGCTTGCGAGGA+AGG + chr3_1:8446827-8446846 None:intergenic 55.0%
TCCTCGCAAGCAAAGCTTCC+TGG - chr3_1:8446827-8446846 Msa0347430:intron 55.0%
TCCAGGAAGCTTTGCTTGCG+AGG + chr3_1:8446831-8446850 None:intergenic 55.0%
GCAACGCGCCGCAAATGAAA+TGG - chr3_1:8446886-8446905 Msa0347430:intron 55.0%
GTGGACGCTAATCCTGAACG+CGG - chr3_1:8446938-8446957 Msa0347430:intron 55.0%
! TGGGTCGGGTTCGGGTTTCT+CGG - chr3_1:8442741-8442760 Msa0347430:three_prime_UTR 60.0%
AACAAGTCGAGTTCGCGGGG+TGG - chr3_1:8443655-8443674 Msa0347430:intron 60.0%
!! TGTTGGTGGTACTCCGTCGG+AGG - chr3_1:8445522-8445541 Msa0347430:intron 60.0%
!! CGGCGACTTGGAGGAGGTTT+TGG + chr3_1:8445712-8445731 None:intergenic 60.0%
CATGGTGAACCACAGGGTGG+TGG - chr3_1:8445787-8445806 Msa0347430:intron 60.0%
!! TGGACTGGTTACCGTACCCG+GGG + chr3_1:8445909-8445928 None:intergenic 60.0%
TGACTGCTGGAACGAGCAGC+GGG + chr3_1:8446593-8446612 None:intergenic 60.0%
GTGACTGCTGGAACGAGCAG+CGG + chr3_1:8446594-8446613 None:intergenic 60.0%
TGACCTAGCTGCTGTCTCCC+GGG + chr3_1:8446743-8446762 None:intergenic 60.0%
GGCCCAATCCCGACATTGCA+AGG + chr3_1:8446805-8446824 None:intergenic 60.0%
GACGCTAATCCTGAACGCGG+CGG - chr3_1:8446941-8446960 Msa0347430:intron 60.0%
ATGTTAAGGCCGCCGCGTTC+AGG + chr3_1:8446953-8446972 None:intergenic 60.0%
GGTGGTACTCCGTCGGAGGA+TGG - chr3_1:8445526-8445545 Msa0347430:intron 65.0%
ACCTCCTCCAAGTCGCCGGT+CGG - chr3_1:8445714-8445733 Msa0347430:intron 65.0%
CAAGTCGCCGGTCGGGCATA+GGG - chr3_1:8445722-8445741 Msa0347430:intron 65.0%
! GGTGAACCACAGGGTGGTGG+TGG - chr3_1:8445790-8445809 Msa0347430:intron 65.0%
!! GAACCACAGGGTGGTGGTGG+CGG - chr3_1:8445793-8445812 Msa0347430:intron 65.0%
!! TGGTGGCGGTGACCTAGGCT+GGG - chr3_1:8445807-8445826 Msa0347430:intron 65.0%
! GCAACGTCGGCTGTCAACCC+CGG - chr3_1:8445889-8445908 Msa0347430:intron 65.0%
! CAACGTCGGCTGTCAACCCC+GGG - chr3_1:8445890-8445909 Msa0347430:intron 65.0%
TCGGCTGTCAACCCCGGGTA+CGG - chr3_1:8445895-8445914 Msa0347430:intron 65.0%
GACTGCTGGAACGAGCAGCG+GGG + chr3_1:8446592-8446611 None:intergenic 65.0%
CTAGCTGCTGTCTCCCGGGA+AGG + chr3_1:8446739-8446758 None:intergenic 65.0%
CTTCCCGGGAGACAGCAGCT+AGG - chr3_1:8446737-8446756 Msa0347430:intron 65.0%
CCTCCTCCAAGTCGCCGGTC+GGG - chr3_1:8445715-8445734 Msa0347430:intron 70.0%
! ATGCCCGACCGGCGACTTGG+AGG + chr3_1:8445721-8445740 None:intergenic 70.0%
CCTATGCCCGACCGGCGACT+TGG + chr3_1:8445724-8445743 None:intergenic 70.0%
CCAAGTCGCCGGTCGGGCAT+AGG - chr3_1:8445721-8445740 Msa0347430:intron 70.0%
TCACCGCCACCACCACCCTG+TGG + chr3_1:8445799-8445818 None:intergenic 70.0%
!! GGTGGTGGTGGCGGTGACCT+AGG - chr3_1:8445802-8445821 Msa0347430:intron 70.0%
!! GTGGTGGCGGTGACCTAGGC+TGG - chr3_1:8445806-8445825 Msa0347430:intron 70.0%
! CCCGACCGGCGACTTGGAGG+AGG + chr3_1:8445718-8445737 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 8442615 8447238 8442615 ID=Msa0347430;Name=Msa0347430
chr3_1 mRNA 8442615 8447238 8442615 ID=Msa0347430-mRNA-1;Parent=Msa0347430;Name=Msa0347430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=278|0.8|0.83|1|0.8|0.66|6|199|708
chr3_1 exon 8442615 8443378 8442615 ID=Msa0347430-mRNA-1:exon:2463;Parent=Msa0347430-mRNA-1
chr3_1 exon 8443504 8443659 8443504 ID=Msa0347430-mRNA-1:exon:2462;Parent=Msa0347430-mRNA-1
chr3_1 exon 8443762 8444573 8443762 ID=Msa0347430-mRNA-1:exon:2461;Parent=Msa0347430-mRNA-1
chr3_1 exon 8445240 8445428 8445240 ID=Msa0347430-mRNA-1:exon:2460;Parent=Msa0347430-mRNA-1
chr3_1 exon 8445998 8446432 8445998 ID=Msa0347430-mRNA-1:exon:2459;Parent=Msa0347430-mRNA-1
chr3_1 exon 8446991 8447238 8446991 ID=Msa0347430-mRNA-1:exon:2458;Parent=Msa0347430-mRNA-1
chr3_1 five_prime_UTR 8446991 8447238 8446991 ID=Msa0347430-mRNA-1:five_prime_utr;Parent=Msa0347430-mRNA-1
chr3_1 five_prime_UTR 8446403 8446432 8446403 ID=Msa0347430-mRNA-1:five_prime_utr;Parent=Msa0347430-mRNA-1
chr3_1 CDS 8445998 8446402 8445998 ID=Msa0347430-mRNA-1:cds;Parent=Msa0347430-mRNA-1
chr3_1 CDS 8445240 8445428 8445240 ID=Msa0347430-mRNA-1:cds;Parent=Msa0347430-mRNA-1
chr3_1 CDS 8443762 8444573 8443762 ID=Msa0347430-mRNA-1:cds;Parent=Msa0347430-mRNA-1
chr3_1 CDS 8443504 8443659 8443504 ID=Msa0347430-mRNA-1:cds;Parent=Msa0347430-mRNA-1
chr3_1 CDS 8442814 8443378 8442814 ID=Msa0347430-mRNA-1:cds;Parent=Msa0347430-mRNA-1
chr3_1 three_prime_UTR 8442615 8442813 8442615 ID=Msa0347430-mRNA-1:three_prime_utr;Parent=Msa0347430-mRNA-1
Gene Sequence

>Msa0347430

ATGGCTGGGATTGATGAAAATCTTGCACTTAATGGTGATTGGGGTCTTCCTAGTCCAAGTCCAAGGTCCCTTTTCTCTAGACTGCTAGAAGAAGATAATAATAATGTAATACGACCGAATTCAGAACATTCGGGAAGTGGTAGAACTGAGGGACAAGATGGTGATTCCGGTACCCAATTGAGCGATACAAGTTATCCAACCGAGAACAAGTCGAGTTCGCGGGGTGGTCTTGTTGATAGAATTGCTGCTAGAACTGGATTTAATGCCCCAAGGTTGAATACAGAGAGCATTAGATCTACTGAACTCTCACTCAATTCTGAGATTCAGTCTCCATACTTGACTATACCACCTGGTCTTAGTCCTACTACACTTTTAGATTCTCCCGTGTTCCTTGCAAATTCATTGGCACAGCCATCTCCAACAACAGGAAAGTTTCCATTTGTTTCAAATGGCAACATCCGCAGCTCAGAATTATCATCAGATGTTCAAGAAAAATCTAAACATAATGGCTTTAATGATATTTATGCATCGTCCTTCGCTTTCAAGCCTACAACAGATTCAGGGCCCTCTTTTTATCAAGGTGCTGGTAGAAATTCGTCCTTCAATTTGCAGATGAATACAACTACACTTTCTCAGCAATCCCTTCATGGTGTTGAAGCTTCAGTTCAATCTCAAAGAGTTGATGCGGTCAATGTTCAAACTGAGAACAAAAGTAGCCTCCATCTTAAGGCTGGGTTTTCTGACTCGCCACCTCAAAAAGACAATTCCACACAATTGGAAGAGCAAGCAGATGAAGAGGGAGAACAGAGAGTTAACGGAGACTCGTTGGTTGCTGGTGTTGGTGGTACTCCGTCGGAGGATGGATATAATTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGCGAGTACCCTCGAAGTTACTACAAGTGTACTCATTCAAATTGTCCGGTTAAAAAGAAAGTAGAACGTTCTCATGAGGGCCATATAACGGAGATTATCTATAAGGGGGCCCACAACCACCCAAAACCTCCTCCAAGTCGCCGGTCGGGCATAGGGTCAAGTAATCCTCATGCTGACATGCAAGTGGACAATCCTGAACATGGTGAACCACAGGGTGGTGGTGGCGGTGACCTAGGCTGGGCTAATGTACAGAAGGGAAATATAGCTGGAGCTGGTAATTGGAAGCATGACAACCTTGAAGCAACGTCGGCTGTCAACCCCGGGTACGGTAACCAGTCCAACAATCTGCAAACTCAAAATGGTACTACTCACATTGATTCAGGAGATGCAGTGGATCGCTCGTCTACATTTTCTAACGAAGAAGAGGAAGACGATCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGCGGAAGGAGATGAATCAGAGTCTAAAAGAAGGAAACTGGAATCATATGCCGAGATGAGTGGAGCTACTAGAGCCATTCGCGAGCCTAGAGTTGTTGTTCAGACTACCAGTGAAGTAGATATCCTCGATGATGGTTATCGGTGGCGGAAATATGGACAGAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACTGTAAGGAAGCATGTGGAGAGAGCATCACATGACCTTAAATCTGTGATCACTACATACGAGGGAAAGCACAATCACGATGTCCCCGCTGCTCGTTCCAGCAGTCACGTCAATGCGAATGCTTCTAACGCAGCTCAAGGACAAGCTTCTGGTCTTCTTCAAAACCATATGCATAGACCTGAACCATCTCAAGTTCACAACGGCATGAGGCCTTCACTTGGTTCGTTCAACCTTCCCGGGAGACAGCAGCTAGGTCATCCACATGGCTTCTTCGGCATGAATCAACACCTGTCGAACCTTGCAATGTCGGGATTGGGCCCTTCCTCGCAAGCAAAGCTTCCTGGAATGCCTATGAACCCATTCATGATGCAGCAACAACAGCAACGCGCCGCAAATGAAATGGGATTCATGTTACCAAAGGGAGAACCAAATGTGGACGCTAATCCTGAACGCGGCGGCCTTAACATGCAAAATGGCTCATCATCAATGTATCAAGATATTATGAATCACATGCCTCTTGGACCTCACATGTAA
Protein sequence

>Msa0347430

MAGIDENLALNGDWGLPSPSPRSLFSRLLEEDNNNVIRPNSEHSGSGRTEGQDGDSGTQLSDTSYPTENKSSSRGGLVDRIAARTGFNAPRLNTESIRSTELSLNSEIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFVSNGNIRSSELSSDVQEKSKHNGFNDIYASSFAFKPTTDSGPSFYQGAGRNSSFNLQMNTTTLSQQSLHGVEASVQSQRVDAVNVQTENKSSLHLKAGFSDSPPQKDNSTQLEEQADEEGEQRVNGDSLVAGVGGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPSRRSGIGSSNPHADMQVDNPEHGEPQGGGGGDLGWANVQKGNIAGAGNWKHDNLEATSAVNPGYGNQSNNLQTQNGTTHIDSGDAVDRSSTFSNEEEEDDQGTHGSVSLGYDAEGDESESKRRKLESYAEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANASNAAQGQASGLLQNHMHRPEPSQVHNGMRPSLGSFNLPGRQQLGHPHGFFGMNQHLSNLAMSGLGPSSQAKLPGMPMNPFMMQQQQQRAANEMGFMLPKGEPNVDANPERGGLNMQNGSSSMYQDIMNHMPLGPHM*