Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347590 | AES68536.1 | 79.923 | 259 | 16 | 4 | 16 | 240 | 18 | 274 | 7.50e-136 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347590 | sp|Q9LG02|HMG11_ARATH | 32.955 | 264 | 99 | 7 | 36 | 231 | 30 | 283 | 6.84e-32 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347590 | G7J0D1 | 79.923 | 259 | 16 | 4 | 16 | 240 | 18 | 274 | 3.58e-136 | 394 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0347590 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347590 | MtrunA17_Chr3g0079841 | 79.923 | 259 | 16 | 4 | 16 | 240 | 18 | 274 | 6.90e-140 | 394 |
| Msa0347590 | MtrunA17_Chr1g0213311 | 38.860 | 193 | 77 | 4 | 29 | 180 | 24 | 216 | 2.22e-32 | 122 |
| Msa0347590 | MtrunA17_Chr3g0143581 | 42.975 | 121 | 45 | 2 | 29 | 125 | 20 | 140 | 1.03e-23 | 94.7 |
| Msa0347590 | MtrunA17_Chr7g0214501 | 40.541 | 111 | 41 | 2 | 70 | 180 | 3 | 88 | 1.02e-15 | 75.5 |
| Msa0347590 | MtrunA17_Chr2g0320431 | 85.000 | 40 | 5 | 1 | 142 | 180 | 216 | 255 | 1.00e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347590 | AT1G55650.1 | 32.955 | 264 | 99 | 7 | 36 | 231 | 30 | 283 | 6.95e-33 | 123 |
| Msa0347590 | AT3G13350.1 | 45.614 | 171 | 61 | 6 | 34 | 180 | 34 | 196 | 1.62e-32 | 121 |
| Msa0347590 | AT3G13350.1 | 51.923 | 52 | 25 | 0 | 181 | 232 | 256 | 307 | 2.97e-11 | 63.2 |
| Msa0347590 | AT1G76110.1 | 34.928 | 209 | 101 | 4 | 4 | 180 | 2 | 207 | 1.10e-27 | 109 |
| Msa0347590 | AT1G04880.1 | 36.364 | 198 | 87 | 5 | 32 | 193 | 21 | 215 | 1.29e-27 | 110 |
Find 69 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTCTATACCTGTCTTTC+TGG | 0.121212 | 3_1:+8736840 | None:intergenic |
| GGAGCAATTAGTAGGAAAAT+TGG | 0.205100 | 3_1:-8736888 | Msa0347590:CDS |
| TGAGAGGTAAAGAAAGATAT+AGG | 0.259472 | 3_1:-8735571 | Msa0347590:CDS |
| CTCCTCAATGGACTCTTATA+TGG | 0.283347 | 3_1:-8735514 | Msa0347590:CDS |
| TAATTTAATGCAGGTTTATC+AGG | 0.284330 | 3_1:-8735603 | Msa0347590:intron |
| TATCAATGATTCACCTGTTC+AGG | 0.286987 | 3_1:-8738242 | Msa0347590:CDS |
| TTGACATGTGGTGTAAATTA+TGG | 0.291819 | 3_1:-8735398 | Msa0347590:three_prime_UTR |
| AGGTAATTGTAGATCGTAAA+TGG | 0.317695 | 3_1:-8738540 | Msa0347590:CDS |
| GAGAAAACTGATAGCTTAGA+AGG | 0.319173 | 3_1:-8735429 | Msa0347590:exon |
| GGTGCGGTTGGAGGAGGATA+AGG | 0.340377 | 3_1:+8740855 | None:intergenic |
| GAGCAATTAGTAGGAAAATT+GGG | 0.369568 | 3_1:-8736887 | Msa0347590:CDS |
| CATAACAAGCGCATCATTCA+TGG | 0.386953 | 3_1:-8738482 | Msa0347590:CDS |
| AAGTCTATACCTGTCTTTCT+GGG | 0.390289 | 3_1:+8736841 | None:intergenic |
| CGTATTGGTTGTGAAGCTAT+TGG | 0.406695 | 3_1:+8738276 | None:intergenic |
| TTCATTGACTTACCCTGAAC+AGG | 0.413930 | 3_1:+8738229 | None:intergenic |
| GAGAGGTAAAGAAAGATATA+GGG | 0.423260 | 3_1:-8735570 | Msa0347590:CDS |
| TGCAGGTTTATCAGGAGAAA+AGG | 0.428315 | 3_1:-8735595 | Msa0347590:intron |
| GTGCGGTTGGAGGAGGATAA+GGG | 0.433456 | 3_1:+8740856 | None:intergenic |
| GTGATAAAGCAACGATAGAT+AGG | 0.439414 | 3_1:+8738450 | None:intergenic |
| CATGAATGATGCGCTTGTTA+TGG | 0.445119 | 3_1:+8738483 | None:intergenic |
| ATCAAAGAACAAAAGGTTTG+AGG | 0.461275 | 3_1:+8735488 | None:intergenic |
| TCCTTGTGGCCTGCAAAATG+AGG | 0.463327 | 3_1:+8736908 | None:intergenic |
| ACAATTGACATGAAATTTGA+TGG | 0.468681 | 3_1:-8737146 | Msa0347590:CDS |
| ATATATAGTTACGGTGGACC+TGG | 0.474943 | 3_1:-8737120 | Msa0347590:CDS |
| GATAGCAGCACCGTCCGTAT+TGG | 0.475279 | 3_1:+8738261 | None:intergenic |
| ATCTCGTGGTGGTATTGAAA+AGG | 0.485522 | 3_1:-8738787 | Msa0347590:intron |
| TCAGAGTAAGGTGCGGTTGG+AGG | 0.486118 | 3_1:+8740846 | None:intergenic |
| AAATAAAATCAAAGAACAAA+AGG | 0.486150 | 3_1:+8735481 | None:intergenic |
| AAGCTATGGATTATAATTCA+AGG | 0.488473 | 3_1:-8735284 | Msa0347590:three_prime_UTR |
| CTTCACTAACCAGGTGTTGA+GGG | 0.490947 | 3_1:+8738391 | None:intergenic |
| CCAACGGTTCAGCTCCTCAA+TGG | 0.491008 | 3_1:-8735526 | Msa0347590:CDS |
| GAGTAAGGTGCGGTTGGAGG+AGG | 0.503378 | 3_1:+8740849 | None:intergenic |
| CTCTATCCAGATGCTTTGAG+TGG | 0.513745 | 3_1:-8738307 | Msa0347590:intron |
| ATCAATGATTCACCTGTTCA+GGG | 0.519797 | 3_1:-8738241 | Msa0347590:intron |
| CCTTGTGGCCTGCAAAATGA+GGG | 0.521599 | 3_1:+8736909 | None:intergenic |
| TCTTAGCACATGATAAGCTA+TGG | 0.531279 | 3_1:-8735298 | Msa0347590:three_prime_UTR |
| TCTGACAGACCCAGAAAGAC+AGG | 0.531673 | 3_1:-8736850 | Msa0347590:intron |
| TTCCTACTAATTGCTCCTTG+TGG | 0.533197 | 3_1:+8736894 | None:intergenic |
| GGAAAATTGGGTTTGCGTGG+AGG | 0.541228 | 3_1:-8736875 | Msa0347590:CDS |
| CAATAGCTTCACAACCAATA+CGG | 0.543956 | 3_1:-8738275 | Msa0347590:CDS |
| TGATGGCGGATATATAGTTA+CGG | 0.545231 | 3_1:-8737129 | Msa0347590:CDS |
| CAAGTCCCTCCCTCAACACC+TGG | 0.550783 | 3_1:-8738400 | Msa0347590:intron |
| AGATCAGAGTAAGGTGCGGT+TGG | 0.552605 | 3_1:+8740843 | None:intergenic |
| ATTAGTCCAGCACAGACACT+TGG | 0.556813 | 3_1:-8737185 | Msa0347590:intron |
| CCATTGAGGAGCTGAACCGT+TGG | 0.557440 | 3_1:+8735526 | None:intergenic |
| GGCCACAAGGAGCAATTAGT+AGG | 0.560286 | 3_1:-8736896 | Msa0347590:CDS |
| ATGCGCTTGTTATGGTATCT+CGG | 0.562285 | 3_1:+8738491 | None:intergenic |
| TATCAGGAGAAAAGGTTGAG+AGG | 0.569076 | 3_1:-8735587 | Msa0347590:CDS |
| TTCGTTGAAGTAACATCTCG+TGG | 0.581244 | 3_1:-8738801 | Msa0347590:intron |
| TCACGAACAAGATCAGAGTA+AGG | 0.583182 | 3_1:+8740834 | None:intergenic |
| TCTTCACTAACCAGGTGTTG+AGG | 0.585501 | 3_1:+8738390 | None:intergenic |
| CTGGGTTCTGAACAGCTGAA+AGG | 0.586271 | 3_1:-8737101 | Msa0347590:CDS |
| GTAGGAAAATTGGGTTTGCG+TGG | 0.592801 | 3_1:-8736878 | Msa0347590:CDS |
| CACTAACCAGGTGTTGAGGG+AGG | 0.596662 | 3_1:+8738394 | None:intergenic |
| AATTGTAGATCGTAAATGGA+AGG | 0.598698 | 3_1:-8738536 | Msa0347590:CDS |
| ACACTTGGTTCTTCAGTGCG+TGG | 0.611516 | 3_1:-8737170 | Msa0347590:CDS |
| TGTAGATCGTAAATGGAAGG+AGG | 0.611934 | 3_1:-8738533 | Msa0347590:CDS |
| AGAAAACTGATAGCTTAGAA+GGG | 0.617589 | 3_1:-8735428 | Msa0347590:exon |
| ACTAACCAGGTGTTGAGGGA+GGG | 0.618972 | 3_1:+8738395 | None:intergenic |
| TATATAGTTACGGTGGACCT+GGG | 0.620088 | 3_1:-8737119 | Msa0347590:CDS |
| CTTTCAGCTGTTCAGAACCC+AGG | 0.626176 | 3_1:+8737102 | None:intergenic |
| AGCTTCACAACCAATACGGA+CGG | 0.629115 | 3_1:-8738271 | Msa0347590:CDS |
| ATGTTGAAGTACAAATCCAA+CGG | 0.669092 | 3_1:-8735542 | Msa0347590:CDS |
| ATTGACATGAAATTTGATGG+CGG | 0.676313 | 3_1:-8737143 | Msa0347590:CDS |
| TTCCATATAAGAGTCCATTG+AGG | 0.690563 | 3_1:+8735512 | None:intergenic |
| ACATGTGGTGTAAATTATGG+CGG | 0.692070 | 3_1:-8735395 | Msa0347590:three_prime_UTR |
| AACAAGATCAGAGTAAGGTG+CGG | 0.707258 | 3_1:+8740839 | None:intergenic |
| TGGCGGATATATAGTTACGG+TGG | 0.725652 | 3_1:-8737126 | Msa0347590:CDS |
| GTTGAAGTAACATCTCGTGG+TGG | 0.754811 | 3_1:-8738798 | Msa0347590:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTAAAAATTGTATTTTAT+TGG | - | chr3_1:8736843-8736862 | Msa0347590:intron | 10.0% |
| !! | TAAAATTAGTAATATATGTA+TGG | - | chr3_1:8739597-8739616 | Msa0347590:intron | 10.0% |
| !! | AAAATTAAAATTCGCTTAAA+TGG | - | chr3_1:8736264-8736283 | Msa0347590:intron | 15.0% |
| !!! | TTTTATTGGATAGTATAATA+TGG | - | chr3_1:8736857-8736876 | Msa0347590:CDS | 15.0% |
| !!! | TTTTATGCACAAAAAAATAT+AGG | - | chr3_1:8737005-8737024 | Msa0347590:intron | 15.0% |
| !! | AAATTTAAGAAAAAGATTAG+AGG | + | chr3_1:8737635-8737654 | None:intergenic | 15.0% |
| !!! | TCTTTTTCTTAAATTTATGT+AGG | - | chr3_1:8737639-8737658 | Msa0347590:intron | 15.0% |
| !!! | TTTTTTTTTATCTCTTGTTA+CGG | - | chr3_1:8738408-8738427 | Msa0347590:CDS | 15.0% |
| !!! | ATGATTTGTTTCTTTAATTT+AGG | - | chr3_1:8738504-8738523 | Msa0347590:CDS | 15.0% |
| !!! | ACATATCTATAAATGTTTTA+AGG | + | chr3_1:8739928-8739947 | None:intergenic | 15.0% |
| !! | AAATTCTACTTATGAAAAAA+TGG | - | chr3_1:8740174-8740193 | Msa0347590:intron | 15.0% |
| !!! | TCTTAGTTTTATATGAAAAT+AGG | - | chr3_1:8740199-8740218 | Msa0347590:intron | 15.0% |
| !!! | CTTAGTTTTATATGAAAATA+GGG | - | chr3_1:8740200-8740219 | Msa0347590:intron | 15.0% |
| !! | TGCATTAAATTAACAAAAAA+TGG | + | chr3_1:8740588-8740607 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTAATTTAATGC+AGG | - | chr3_1:8740587-8740606 | Msa0347590:intron | 15.0% |
| !! | AAATAAAATCAAAGAACAAA+AGG | + | chr3_1:8740721-8740740 | None:intergenic | 15.0% |
| !!! | ATTCTTGGTTTTTTATTTTG+TGG | - | chr3_1:8735515-8735534 | Msa0347590:CDS | 20.0% |
| !!! | TTCTTGGTTTTTTATTTTGT+GGG | - | chr3_1:8735516-8735535 | Msa0347590:CDS | 20.0% |
| !!! | ATCAATTTTGTTTGTATGAT+GGG | - | chr3_1:8735543-8735562 | Msa0347590:CDS | 20.0% |
| !!! | AAGTGAAATTTGATATTTTG+TGG | - | chr3_1:8736208-8736227 | Msa0347590:intron | 20.0% |
| !!! | AGTGAAATTTGATATTTTGT+GGG | - | chr3_1:8736209-8736228 | Msa0347590:intron | 20.0% |
| !!! | TATGAAAAATTGTTTTTCAG+AGG | - | chr3_1:8736237-8736256 | Msa0347590:intron | 20.0% |
| !! | CATAAATATCATAAGAAATG+CGG | - | chr3_1:8736300-8736319 | Msa0347590:intron | 20.0% |
| !!! | TTTTAGATTACTGTAAGAAA+GGG | - | chr3_1:8736361-8736380 | Msa0347590:intron | 20.0% |
| !!! | AATCATGATTTGTTAAGAAT+GGG | + | chr3_1:8736887-8736906 | None:intergenic | 20.0% |
| !! | GAAAATCTTGAATTATTGTT+CGG | + | chr3_1:8737050-8737069 | None:intergenic | 20.0% |
| !! | TATGACAAAAGAAATATGAT+TGG | - | chr3_1:8737083-8737102 | Msa0347590:intron | 20.0% |
| !! | AGGATTTATCTTAATGAATT+AGG | - | chr3_1:8737184-8737203 | Msa0347590:intron | 20.0% |
| !!! | ATTTTCAAAACGTAATTAGA+GGG | + | chr3_1:8737846-8737865 | None:intergenic | 20.0% |
| !!! | AATTTTCAAAACGTAATTAG+AGG | + | chr3_1:8737847-8737866 | None:intergenic | 20.0% |
| !!! | TCTTTTTCTATGTTTTTATG+TGG | - | chr3_1:8738174-8738193 | Msa0347590:intron | 20.0% |
| !!! | TTTTTTTTATCTCTTGTTAC+GGG | - | chr3_1:8738409-8738428 | Msa0347590:CDS | 20.0% |
| !! | TACACAAAGCTAAAAAAAAA+TGG | + | chr3_1:8738535-8738554 | None:intergenic | 20.0% |
| !!! | TTTAATTTGTCTTACAAATC+AGG | - | chr3_1:8739553-8739572 | Msa0347590:intron | 20.0% |
| !! | TGTCTTTATAATTATCTATG+TGG | - | chr3_1:8740360-8740379 | Msa0347590:intron | 20.0% |
| ! | GCAGAAAAAACACTAAAAAT+TGG | + | chr3_1:8735493-8735512 | None:intergenic | 25.0% |
| !!! | GATCAATTTTGTTTGTATGA+TGG | - | chr3_1:8735542-8735561 | Msa0347590:CDS | 25.0% |
| !! | ATTTCTGAAAATGACATAAC+TGG | - | chr3_1:8735668-8735687 | Msa0347590:intron | 25.0% |
| ! | TTAACGTTAGGATTCATAAA+GGG | - | chr3_1:8736036-8736055 | Msa0347590:intron | 25.0% |
| ! | AATGTTGAGTCAACTAAATA+AGG | - | chr3_1:8736087-8736106 | Msa0347590:intron | 25.0% |
| ! | ATGTTGAGTCAACTAAATAA+GGG | - | chr3_1:8736088-8736107 | Msa0347590:intron | 25.0% |
| ! | TAAATAACTATGACATGACA+TGG | + | chr3_1:8736160-8736179 | None:intergenic | 25.0% |
| !! | GTAATCTAAAACGATACATA+CGG | + | chr3_1:8736352-8736371 | None:intergenic | 25.0% |
| !!! | GTTTTAGATTACTGTAAGAA+AGG | - | chr3_1:8736360-8736379 | Msa0347590:intron | 25.0% |
| ! | GCAGAAAAAACACTAAAAAA+CGG | + | chr3_1:8736687-8736706 | None:intergenic | 25.0% |
| !!! | ATTCTTAGTTTTCGATTTTG+TGG | - | chr3_1:8736709-8736728 | Msa0347590:intron | 25.0% |
| !!! | TTCTTAGTTTTCGATTTTGT+GGG | - | chr3_1:8736710-8736729 | Msa0347590:intron | 25.0% |
| !!! | GAATCATGATTTGTTAAGAA+TGG | + | chr3_1:8736888-8736907 | None:intergenic | 25.0% |
| ! | ATTTGATTCAGATTGTGAAT+CGG | - | chr3_1:8736910-8736929 | Msa0347590:CDS | 25.0% |
| ! | AGGGCAAAACATTATTATTA+GGG | + | chr3_1:8737321-8737340 | None:intergenic | 25.0% |
| ! | AAGGGCAAAACATTATTATT+AGG | + | chr3_1:8737322-8737341 | None:intergenic | 25.0% |
| !! | AATTAGTAGAGAAGTATACA+AGG | + | chr3_1:8737442-8737461 | None:intergenic | 25.0% |
| ! | GAAAACACATAAGAAAGTAA+AGG | + | chr3_1:8737505-8737524 | None:intergenic | 25.0% |
| !! | ATTAAAACAGCTTTTCAGTT+TGG | - | chr3_1:8737541-8737560 | Msa0347590:intron | 25.0% |
| !!! | TGCTTCTTTTATTTTGAAAC+TGG | - | chr3_1:8738453-8738472 | Msa0347590:CDS | 25.0% |
| ! | AGAAACAAATCATCTAAGAA+TGG | + | chr3_1:8738497-8738516 | None:intergenic | 25.0% |
| ! | ATATACTTTCCATTTATCTG+TGG | - | chr3_1:8738958-8738977 | Msa0347590:intron | 25.0% |
| ! | ACAATTGACATGAAATTTGA+TGG | - | chr3_1:8739053-8739072 | Msa0347590:intron | 25.0% |
| ! | TGTCAGTTACAAAAAGAAAA+AGG | + | chr3_1:8739438-8739457 | None:intergenic | 25.0% |
| !! | ATATCTGGAATAGTTTATTC+AGG | - | chr3_1:8739516-8739535 | Msa0347590:intron | 25.0% |
| ! | GTTACAAATAATAGATCACT+AGG | + | chr3_1:8739803-8739822 | None:intergenic | 25.0% |
| !! | AATTCAATGAATCCAACTTT+TGG | + | chr3_1:8739905-8739924 | None:intergenic | 25.0% |
| ! | ATACAAGATTATAAAGTAGC+AGG | - | chr3_1:8739983-8740002 | Msa0347590:intron | 25.0% |
| ! | TTGAAAAGACAACTAGAAAA+GGG | + | chr3_1:8740009-8740028 | None:intergenic | 25.0% |
| ! | TCATAAGTAGAATTTGAAAG+TGG | + | chr3_1:8740169-8740188 | None:intergenic | 25.0% |
| ! | TAATTTAATGCAGGTTTATC+AGG | - | chr3_1:8740596-8740615 | Msa0347590:intron | 25.0% |
| !! | AAGCTATGGATTATAATTCA+AGG | - | chr3_1:8740915-8740934 | Msa0347590:CDS | 25.0% |
| GAAGCACACTTACTTTAATT+TGG | + | chr3_1:8735441-8735460 | None:intergenic | 30.0% | |
| !!! | GTGTTTTTTCTGCAAATTCT+TGG | - | chr3_1:8735500-8735519 | Msa0347590:CDS | 30.0% |
| TATGAAGCACAAATACTTCT+CGG | + | chr3_1:8735752-8735771 | None:intergenic | 30.0% | |
| !!! | GGTTTTGAATAGTTAACGTT+AGG | - | chr3_1:8736024-8736043 | Msa0347590:intron | 30.0% |
| GTTAACGTTAGGATTCATAA+AGG | - | chr3_1:8736035-8736054 | Msa0347590:intron | 30.0% | |
| TAACGTTAGGATTCATAAAG+GGG | - | chr3_1:8736037-8736056 | Msa0347590:intron | 30.0% | |
| TGGATTTGACAATTGTACAA+CGG | + | chr3_1:8736140-8736159 | None:intergenic | 30.0% | |
| TTAAAATTCGCTTAAATGGC+AGG | - | chr3_1:8736268-8736287 | Msa0347590:intron | 30.0% | |
| TAAAATTCGCTTAAATGGCA+GGG | - | chr3_1:8736269-8736288 | Msa0347590:intron | 30.0% | |
| AAGAAAGGGAATTGAGTATT+TGG | - | chr3_1:8736375-8736394 | Msa0347590:intron | 30.0% | |
| GAATTGAGTATTTGGTATTG+TGG | - | chr3_1:8736383-8736402 | Msa0347590:intron | 30.0% | |
| !!! | TGAATCGGAAACCTATTTTT+TGG | - | chr3_1:8736925-8736944 | Msa0347590:intron | 30.0% |
| ! | TGATTGGCTACAAAAAGTTT+AGG | - | chr3_1:8737099-8737118 | Msa0347590:CDS | 30.0% |
| TGCTGTTATCTGAATGAATT+AGG | - | chr3_1:8737123-8737142 | Msa0347590:CDS | 30.0% | |
| TGAATCCAGATTCATTAAGA+TGG | + | chr3_1:8737151-8737170 | None:intergenic | 30.0% | |
| AGGTAATTGTAGATCGTAAA+TGG | - | chr3_1:8737659-8737678 | Msa0347590:intron | 30.0% | |
| AATTGTAGATCGTAAATGGA+AGG | - | chr3_1:8737663-8737682 | Msa0347590:intron | 30.0% | |
| AAAACGTAATTAGAGGGAAA+AGG | + | chr3_1:8737840-8737859 | None:intergenic | 30.0% | |
| CTACTATTGTAAGAAGTTAG+AGG | + | chr3_1:8738071-8738090 | None:intergenic | 30.0% | |
| ! | AATGATCATTTGTGATGGAA+TGG | - | chr3_1:8738146-8738165 | Msa0347590:intron | 30.0% |
| !! | CTATGTTTTTATGTGGTGTT+TGG | - | chr3_1:8738181-8738200 | Msa0347590:intron | 30.0% |
| GGATGTATAGTCAGTATTAT+TGG | + | chr3_1:8738319-8738338 | None:intergenic | 30.0% | |
| TTATGTGAAACCATGAATGA+TGG | + | chr3_1:8738340-8738359 | None:intergenic | 30.0% | |
| CTTTGTGTACATCTAATCTA+TGG | - | chr3_1:8738546-8738565 | Msa0347590:intron | 30.0% | |
| !! | AGCTATTAGCTGTTTTCATT+AGG | + | chr3_1:8738796-8738815 | None:intergenic | 30.0% |
| TTTCCATTTATCTGTGGTAA+AGG | - | chr3_1:8738964-8738983 | Msa0347590:intron | 30.0% | |
| AAACCTTTACCACAGATAAA+TGG | + | chr3_1:8738970-8738989 | None:intergenic | 30.0% | |
| ATTGACATGAAATTTGATGG+CGG | - | chr3_1:8739056-8739075 | Msa0347590:intron | 30.0% | |
| TATATCGACCGAAATCAAAT+AGG | - | chr3_1:8739221-8739240 | Msa0347590:intron | 30.0% | |
| ! | TAACCACTCCTATTTGATTT+CGG | + | chr3_1:8739232-8739251 | None:intergenic | 30.0% |
| GAGCAATTAGTAGGAAAATT+GGG | - | chr3_1:8739312-8739331 | Msa0347590:intron | 30.0% | |
| AAAAAGAAAAAGGAATCTGC+AGG | + | chr3_1:8739428-8739447 | None:intergenic | 30.0% | |
| ! | GTAACTGACATATTTTCTTC+TGG | - | chr3_1:8739448-8739467 | Msa0347590:intron | 30.0% |
| GTTTAATGACGATGAAATAG+AGG | - | chr3_1:8739474-8739493 | Msa0347590:intron | 30.0% | |
| ATGAAATAGAGGAAAAGGAA+AGG | - | chr3_1:8739485-8739504 | Msa0347590:intron | 30.0% | |
| GGAAAGGTTATTTGTATATC+TGG | - | chr3_1:8739501-8739520 | Msa0347590:intron | 30.0% | |
| AATAGTTTATTCAGGCACAT+AGG | - | chr3_1:8739524-8739543 | Msa0347590:intron | 30.0% | |
| TCATTAGATCACAAATGACA+AGG | + | chr3_1:8739880-8739899 | None:intergenic | 30.0% | |
| GATCTAATGAATCCAAAAGT+TGG | - | chr3_1:8739890-8739909 | Msa0347590:intron | 30.0% | |
| GTTGAAAAGACAACTAGAAA+AGG | + | chr3_1:8740010-8740029 | None:intergenic | 30.0% | |
| !! | AGACCTAACTATTTTTCTAC+TGG | - | chr3_1:8740066-8740085 | Msa0347590:intron | 30.0% |
| AAGCCAGTAGAAAAATAGTT+AGG | + | chr3_1:8740072-8740091 | None:intergenic | 30.0% | |
| AAAATAGGGCTGTAATAGTA+AGG | - | chr3_1:8740214-8740233 | Msa0347590:intron | 30.0% | |
| GCATAATGATGAGATATGAA+TGG | + | chr3_1:8740313-8740332 | None:intergenic | 30.0% | |
| TGAGAGGTAAAGAAAGATAT+AGG | - | chr3_1:8740628-8740647 | Msa0347590:intron | 30.0% | |
| GAGAGGTAAAGAAAGATATA+GGG | - | chr3_1:8740629-8740648 | Msa0347590:intron | 30.0% | |
| ATGTTGAAGTACAAATCCAA+CGG | - | chr3_1:8740657-8740676 | Msa0347590:intron | 30.0% | |
| ATCAAAGAACAAAAGGTTTG+AGG | + | chr3_1:8740714-8740733 | None:intergenic | 30.0% | |
| ! | TAAGCTATCAGTTTTCTCAT+GGG | + | chr3_1:8740768-8740787 | None:intergenic | 30.0% |
| AGAAAACTGATAGCTTAGAA+GGG | - | chr3_1:8740771-8740790 | Msa0347590:intron | 30.0% | |
| TTGACATGTGGTGTAAATTA+TGG | - | chr3_1:8740801-8740820 | Msa0347590:CDS | 30.0% | |
| ! | GTTTTTCTTAGATCAGTGAA+TGG | - | chr3_1:8740871-8740890 | Msa0347590:CDS | 30.0% |
| !!! | CTCTCACACTGATTTTGATT+TGG | + | chr3_1:8735296-8735315 | None:intergenic | 35.0% |
| ! | GAAAAGATTGAAGCTTTTGC+TGG | + | chr3_1:8735403-8735422 | None:intergenic | 35.0% |
| ! | CAATCTTTTCATGATTCGCT+TGG | - | chr3_1:8735413-8735432 | Msa0347590:three_prime_UTR | 35.0% |
| CTGGATGTTATCATATGTGT+TGG | - | chr3_1:8735687-8735706 | Msa0347590:intron | 35.0% | |
| TATACAATGCTCTGTCCATA+AGG | - | chr3_1:8735841-8735860 | Msa0347590:intron | 35.0% | |
| TTTACTGACACGTGTAAATG+AGG | - | chr3_1:8736176-8736195 | Msa0347590:intron | 35.0% | |
| TTACTGACACGTGTAAATGA+GGG | - | chr3_1:8736177-8736196 | Msa0347590:intron | 35.0% | |
| !!! | CTGGTTACTTGTCATTTTTC+TGG | + | chr3_1:8736429-8736448 | None:intergenic | 35.0% |
| ! | ATTGAAGTTTTTCCCAGAAG+AGG | + | chr3_1:8736541-8736560 | None:intergenic | 35.0% |
| ! | CAATCTTTTCATGATTCGCT+TGG | - | chr3_1:8735413-8735432 | Msa0347590:three_prime_UTR | 35.0% |
| AACAAGCTGTGGTACAAAAA+GGG | + | chr3_1:8736632-8736651 | None:intergenic | 35.0% | |
| ! | AGTTTTCGATTTTGTGGGTT+AGG | - | chr3_1:8736715-8736734 | Msa0347590:intron | 35.0% |
| CGATTCACAGTCCAAAAAAT+AGG | + | chr3_1:8736939-8736958 | None:intergenic | 35.0% | |
| AGGATCCATCTTAATGAATC+TGG | - | chr3_1:8737143-8737162 | Msa0347590:CDS | 35.0% | |
| AGGATTCATCTTCATGAATC+TGG | - | chr3_1:8737204-8737223 | Msa0347590:intron | 35.0% | |
| GAATCCTACACAAACACAAA+GGG | + | chr3_1:8737340-8737359 | None:intergenic | 35.0% | |
| TTGTGTAGGATTCCTACTAT+AGG | - | chr3_1:8737347-8737366 | Msa0347590:intron | 35.0% | |
| TGTGTAGGATTCCTACTATA+GGG | - | chr3_1:8737348-8737367 | Msa0347590:intron | 35.0% | |
| CATGTATGTTTCATGAGACA+AGG | + | chr3_1:8737479-8737498 | None:intergenic | 35.0% | |
| GTGATAAAGCAACGATAGAT+AGG | + | chr3_1:8737752-8737771 | None:intergenic | 35.0% | |
| GGATAGAGGAAATTATTGAG+TGG | + | chr3_1:8737880-8737899 | None:intergenic | 35.0% | |
| CAATAGCTTCACAACCAATA+CGG | - | chr3_1:8737924-8737943 | Msa0347590:intron | 35.0% | |
| TATCAATGATTCACCTGTTC+AGG | - | chr3_1:8737957-8737976 | Msa0347590:intron | 35.0% | |
| ATCAATGATTCACCTGTTCA+GGG | - | chr3_1:8737958-8737977 | Msa0347590:intron | 35.0% | |
| ACAATAGTAGTAGCAGAGAT+AGG | - | chr3_1:8738081-8738100 | Msa0347590:intron | 35.0% | |
| CAATAGTAGTAGCAGAGATA+GGG | - | chr3_1:8738082-8738101 | Msa0347590:intron | 35.0% | |
| AATAGTAGTAGCAGAGATAG+GGG | - | chr3_1:8738083-8738102 | Msa0347590:intron | 35.0% | |
| GGATCAATGATCATTTGTGA+TGG | - | chr3_1:8738141-8738160 | Msa0347590:intron | 35.0% | |
| ! | ATCATTTGTGATGGAATGGT+TGG | - | chr3_1:8738150-8738169 | Msa0347590:intron | 35.0% |
| !! | TCGGGTTATAGTCTTATTGT+CGG | + | chr3_1:8738232-8738251 | None:intergenic | 35.0% |
| ATGTAACCTGTTAGCTCATT+CGG | + | chr3_1:8738251-8738270 | None:intergenic | 35.0% | |
| GACTATACATCCATCATTCA+TGG | - | chr3_1:8738327-8738346 | Msa0347590:intron | 35.0% | |
| ! | ATCCAAAGCTTTATCACACT+AGG | + | chr3_1:8738643-8738662 | None:intergenic | 35.0% |
| ATTTACTGCCATAAGCACAT+AGG | - | chr3_1:8738679-8738698 | Msa0347590:intron | 35.0% | |
| TTTACTGCCATAAGCACATA+GGG | - | chr3_1:8738680-8738699 | Msa0347590:intron | 35.0% | |
| TAGGTATCTTGGAGAGTTTA+AGG | + | chr3_1:8738777-8738796 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATTAGGTATCT+TGG | + | chr3_1:8738788-8738807 | None:intergenic | 35.0% |
| ACATAGATTAGGACTCTGTT+TGG | + | chr3_1:8738928-8738947 | None:intergenic | 35.0% | |
| AACAGAGTCCTAATCTATGT+TGG | - | chr3_1:8738928-8738947 | Msa0347590:intron | 35.0% | |
| ! | TCCTAATCTATGTTGGTAAG+TGG | - | chr3_1:8738935-8738954 | Msa0347590:intron | 35.0% |
| TCCACTTACCAACATAGATT+AGG | + | chr3_1:8738939-8738958 | None:intergenic | 35.0% | |
| !! | TGATGGCGGATATATAGTTA+CGG | - | chr3_1:8739070-8739089 | Msa0347590:intron | 35.0% |
| CATTGCTTGAAACATGATAC+AGG | + | chr3_1:8739127-8739146 | None:intergenic | 35.0% | |
| TGTTTCAAGCAATGCATCTA+AGG | - | chr3_1:8739133-8739152 | Msa0347590:intron | 35.0% | |
| GTTTCAAGCAATGCATCTAA+GGG | - | chr3_1:8739134-8739153 | Msa0347590:intron | 35.0% | |
| TCTAAGGGTTCTTCTATTGA+AGG | - | chr3_1:8739149-8739168 | Msa0347590:intron | 35.0% | |
| ! | TTTTTGCTGAGAATTATGCC+AGG | - | chr3_1:8739261-8739280 | Msa0347590:intron | 35.0% |
| GGAGCAATTAGTAGGAAAAT+TGG | - | chr3_1:8739311-8739330 | Msa0347590:intron | 35.0% | |
| AAGTCTATACCTGTCTTTCT+GGG | + | chr3_1:8739361-8739380 | None:intergenic | 35.0% | |
| CAATACTCTGACTACATCAA+CGG | + | chr3_1:8739394-8739413 | None:intergenic | 35.0% | |
| TGACGATGAAATAGAGGAAA+AGG | - | chr3_1:8739480-8739499 | Msa0347590:intron | 35.0% | |
| TCAGATTTGCAAACTATGCT+AGG | - | chr3_1:8739682-8739701 | Msa0347590:intron | 35.0% | |
| ACAAATGACAAGGAACATCA+AGG | + | chr3_1:8739870-8739889 | None:intergenic | 35.0% | |
| ATATACACTGTAAAGCCTGT+GGG | + | chr3_1:8740046-8740065 | None:intergenic | 35.0% | |
| TATATACACTGTAAAGCCTG+TGG | + | chr3_1:8740047-8740066 | None:intergenic | 35.0% | |
| !!! | TTTTCTACTGGCTTCTTAAG+AGG | - | chr3_1:8740078-8740097 | Msa0347590:intron | 35.0% |
| GACCTACGTCAAGAAATATT+AGG | - | chr3_1:8740123-8740142 | Msa0347590:intron | 35.0% | |
| CTCCTAATATTTCTTGACGT+AGG | + | chr3_1:8740128-8740147 | None:intergenic | 35.0% | |
| CTACGTCAAGAAATATTAGG+AGG | - | chr3_1:8740126-8740145 | Msa0347590:intron | 35.0% | |
| TTCCATATAAGAGTCCATTG+AGG | + | chr3_1:8740690-8740709 | None:intergenic | 35.0% | |
| ! | AAGCTATCAGTTTTCTCATG+GGG | + | chr3_1:8740767-8740786 | None:intergenic | 35.0% |
| ! | CTAAGCTATCAGTTTTCTCA+TGG | + | chr3_1:8740769-8740788 | None:intergenic | 35.0% |
| GAGAAAACTGATAGCTTAGA+AGG | - | chr3_1:8740770-8740789 | Msa0347590:intron | 35.0% | |
| ACATGTGGTGTAAATTATGG+CGG | - | chr3_1:8740804-8740823 | Msa0347590:CDS | 35.0% | |
| TCTTAGCACATGATAAGCTA+TGG | - | chr3_1:8740901-8740920 | Msa0347590:CDS | 35.0% | |
| AACAAGATCAGAGTAAGGTG+CGG | + | chr3_1:8735363-8735382 | None:intergenic | 40.0% | |
| TCACGAACAAGATCAGAGTA+AGG | + | chr3_1:8735368-8735387 | None:intergenic | 40.0% | |
| GCAGCAACTAAGTGATAACT+GGG | + | chr3_1:8735602-8735621 | None:intergenic | 40.0% | |
| !! | CATATGTGTTGGTGTTGTGT+TGG | - | chr3_1:8735698-8735717 | Msa0347590:intron | 40.0% |
| !! | TGTTGGTGTTGTGTTGGTTT+CGG | - | chr3_1:8735704-8735723 | Msa0347590:intron | 40.0% |
| GCACAAATACTTCTCGGATT+AGG | + | chr3_1:8735746-8735765 | None:intergenic | 40.0% | |
| !! | TAGAGAGCATTTGCTTGTGT+TGG | - | chr3_1:8735781-8735800 | Msa0347590:intron | 40.0% |
| GTCAATTAAGCTAGGCCTTA+TGG | + | chr3_1:8735859-8735878 | None:intergenic | 40.0% | |
| CCTAGCTTAATTGACAATGC+CGG | - | chr3_1:8735864-8735883 | Msa0347590:intron | 40.0% | |
| TATTGCTAGGCTAGATACCT+TGG | - | chr3_1:8735887-8735906 | Msa0347590:intron | 40.0% | |
| ! | AGTGCCAAGGGTTCTTATTT+CGG | + | chr3_1:8735934-8735953 | None:intergenic | 40.0% |
| TTAGTCCTATCCGGTTCAAA+GGG | + | chr3_1:8735991-8736010 | None:intergenic | 40.0% | |
| ATTAGTCCTATCCGGTTCAA+AGG | + | chr3_1:8735992-8736011 | None:intergenic | 40.0% | |
| !! | AATCAGGGATTAGTCCTATC+CGG | + | chr3_1:8736000-8736019 | None:intergenic | 40.0% |
| GATAGGACTAATCCCTGATT+CGG | - | chr3_1:8736000-8736019 | Msa0347590:intron | 40.0% | |
| TATTCAAAACCGCCGAATCA+GGG | + | chr3_1:8736015-8736034 | None:intergenic | 40.0% | |
| !!! | GCGGATTTTGGTTTTGATTC+TGG | + | chr3_1:8736448-8736467 | None:intergenic | 40.0% |
| GAACAAGCTGTGGTACAAAA+AGG | + | chr3_1:8736633-8736652 | None:intergenic | 40.0% | |
| GGATTCATGTCTTGTGAAAC+AGG | - | chr3_1:8737164-8737183 | Msa0347590:CDS | 40.0% | |
| ! | ATCGCTGTGTGTAGCATTTT+TGG | + | chr3_1:8737238-8737257 | None:intergenic | 40.0% |
| TTTGCCCTTTGTGTTTGTGT+AGG | - | chr3_1:8737333-8737352 | Msa0347590:intron | 40.0% | |
| GGAATCCTACACAAACACAA+AGG | + | chr3_1:8737341-8737360 | None:intergenic | 40.0% | |
| GTGTAGGATTCCTACTATAG+GGG | - | chr3_1:8737349-8737368 | Msa0347590:intron | 40.0% | |
| TGTAGGATTCCTACTATAGG+GGG | - | chr3_1:8737350-8737369 | Msa0347590:intron | 40.0% | |
| ! | GAGATGTTACTTCAACGAAG+AGG | + | chr3_1:8737397-8737416 | None:intergenic | 40.0% |
| TTCGTTGAAGTAACATCTCG+TGG | - | chr3_1:8737398-8737417 | Msa0347590:intron | 40.0% | |
| ! | ATCTCGTGGTGGTATTGAAA+AGG | - | chr3_1:8737412-8737431 | Msa0347590:intron | 40.0% |
| TGTAGATCGTAAATGGAAGG+AGG | - | chr3_1:8737666-8737685 | Msa0347590:intron | 40.0% | |
| !! | ATGCGCTTGTTATGGTATCT+CGG | + | chr3_1:8737711-8737730 | None:intergenic | 40.0% |
| ! | CATGAATGATGCGCTTGTTA+TGG | + | chr3_1:8737719-8737738 | None:intergenic | 40.0% |
| CATAACAAGCGCATCATTCA+TGG | - | chr3_1:8737717-8737736 | Msa0347590:intron | 40.0% | |
| AGGTAGTATCTTCACTAACC+AGG | + | chr3_1:8737820-8737839 | None:intergenic | 40.0% | |
| !! | CGTATTGGTTGTGAAGCTAT+TGG | + | chr3_1:8737926-8737945 | None:intergenic | 40.0% |
| !! | TTCATTGACTTACCCTGAAC+AGG | + | chr3_1:8737973-8737992 | None:intergenic | 40.0% |
| TGTTCCTCTGACATTTGTCA+TGG | - | chr3_1:8738120-8738139 | Msa0347590:intron | 40.0% | |
| TGATCCATGACAAATGTCAG+AGG | + | chr3_1:8738127-8738146 | None:intergenic | 40.0% | |
| TATAACCCGAATGAGCTAAC+AGG | - | chr3_1:8738242-8738261 | Msa0347590:CDS | 40.0% | |
| TGTAACCTGTTAGCTCATTC+GGG | + | chr3_1:8738250-8738269 | None:intergenic | 40.0% | |
| GAATGAGCTAACAGGTTACA+TGG | - | chr3_1:8738250-8738269 | Msa0347590:CDS | 40.0% | |
| ! | AAGCTTTATCACACTAGGTG+AGG | + | chr3_1:8738638-8738657 | None:intergenic | 40.0% |
| CACCTAGTGTGATAAAGCTT+TGG | - | chr3_1:8738638-8738657 | Msa0347590:intron | 40.0% | |
| TTACTGCCATAAGCACATAG+GGG | - | chr3_1:8738681-8738700 | Msa0347590:intron | 40.0% | |
| TTGGGAGAGCTTATGGAAAT+TGG | - | chr3_1:8738709-8738728 | Msa0347590:intron | 40.0% | |
| ATATATAGTTACGGTGGACC+TGG | - | chr3_1:8739079-8739098 | Msa0347590:intron | 40.0% | |
| TATATAGTTACGGTGGACCT+GGG | - | chr3_1:8739080-8739099 | Msa0347590:intron | 40.0% | |
| TTCCTACTAATTGCTCCTTG+TGG | + | chr3_1:8739308-8739327 | None:intergenic | 40.0% | |
| CAAGTCTATACCTGTCTTTC+TGG | + | chr3_1:8739362-8739381 | None:intergenic | 40.0% | |
| !!! | CTACCATTTTTTGCTATCCG+CGG | - | chr3_1:8739762-8739781 | Msa0347590:intron | 40.0% |
| ATGTTGTCAGAGTGTGTGAA+AGG | - | chr3_1:8739944-8739963 | Msa0347590:intron | 40.0% | |
| GTGTGAAAGGAAGGATGTTA+AGG | - | chr3_1:8739957-8739976 | Msa0347590:intron | 40.0% | |
| !! | GTCGTAGACTATTTCTACAG+GGG | + | chr3_1:8740106-8740125 | None:intergenic | 40.0% |
| !! | GGTCGTAGACTATTTCTACA+GGG | + | chr3_1:8740107-8740126 | None:intergenic | 40.0% |
| !! | AGGTCGTAGACTATTTCTAC+AGG | + | chr3_1:8740108-8740127 | None:intergenic | 40.0% |
| GAAACTAACATCGCACAAAG+TGG | + | chr3_1:8740335-8740354 | None:intergenic | 40.0% | |
| TCTATGTGGTGAGATGTGAT+TGG | - | chr3_1:8740374-8740393 | Msa0347590:intron | 40.0% | |
| TGCAGGTTTATCAGGAGAAA+AGG | - | chr3_1:8740604-8740623 | Msa0347590:intron | 40.0% | |
| TATCAGGAGAAAAGGTTGAG+AGG | - | chr3_1:8740612-8740631 | Msa0347590:intron | 40.0% | |
| ! | CTCCTCAATGGACTCTTATA+TGG | - | chr3_1:8740685-8740704 | Msa0347590:intron | 40.0% |
| ! | AAGGGTAGCTTTTTGACATG+TGG | - | chr3_1:8740789-8740808 | Msa0347590:CDS | 40.0% |
| GGCAGCAACTAAGTGATAAC+TGG | + | chr3_1:8735603-8735622 | None:intergenic | 45.0% | |
| GCCTATGAAGCACACATACA+CGG | - | chr3_1:8735620-8735639 | Msa0347590:intron | 45.0% | |
| TCCGTGTATGTGTGCTTCAT+AGG | + | chr3_1:8735624-8735643 | None:intergenic | 45.0% | |
| CCGGCATTGTCAATTAAGCT+AGG | + | chr3_1:8735867-8735886 | None:intergenic | 45.0% | |
| TTGACAATGCCGGTATTGCT+AGG | - | chr3_1:8735874-8735893 | Msa0347590:intron | 45.0% | |
| GGTATCTAGCCTAGCAATAC+CGG | + | chr3_1:8735886-8735905 | None:intergenic | 45.0% | |
| ! | CCAAGGGTTCTTATTTCGGT+GGG | + | chr3_1:8735930-8735949 | None:intergenic | 45.0% |
| CTATTCAAAACCGCCGAATC+AGG | + | chr3_1:8736016-8736035 | None:intergenic | 45.0% | |
| TTTGTGAGTTCAGTCTCACG+CGG | + | chr3_1:8736467-8736486 | None:intergenic | 45.0% | |
| AACAAGGTCAGAGTAGAGAG+CGG | + | chr3_1:8736507-8736526 | None:intergenic | 45.0% | |
| AGAGGTTAGCATCACGAACA+AGG | + | chr3_1:8736523-8736542 | None:intergenic | 45.0% | |
| TTCGTGATGCTAACCTCTTC+TGG | - | chr3_1:8736525-8736544 | Msa0347590:intron | 45.0% | |
| TCGTGATGCTAACCTCTTCT+GGG | - | chr3_1:8736526-8736545 | Msa0347590:intron | 45.0% | |
| CTAGATCGATGAACAAGCTG+TGG | + | chr3_1:8736643-8736662 | None:intergenic | 45.0% | |
| GTTGAAGTAACATCTCGTGG+TGG | - | chr3_1:8737401-8737420 | Msa0347590:intron | 45.0% | |
| !! | CTTCACTAACCAGGTGTTGA+GGG | + | chr3_1:8737811-8737830 | None:intergenic | 45.0% |
| ! | TCTTCACTAACCAGGTGTTG+AGG | + | chr3_1:8737812-8737831 | None:intergenic | 45.0% |
| ! | CACTCAAAGCATCTGGATAG+AGG | + | chr3_1:8737894-8737913 | None:intergenic | 45.0% |
| ! | CTCTATCCAGATGCTTTGAG+TGG | - | chr3_1:8737892-8737911 | Msa0347590:intron | 45.0% |
| ! | ACGTTTCCACTCAAAGCATC+TGG | + | chr3_1:8737901-8737920 | None:intergenic | 45.0% |
| AGCTTCACAACCAATACGGA+CGG | - | chr3_1:8737928-8737947 | Msa0347590:intron | 45.0% | |
| CCAGCTACTTAGATCAAACG+AGG | + | chr3_1:8738615-8738634 | None:intergenic | 45.0% | |
| CCTCGTTTGATCTAAGTAGC+TGG | - | chr3_1:8738612-8738631 | Msa0347590:intron | 45.0% | |
| AACAGTCCCCTATGTGCTTA+TGG | + | chr3_1:8738690-8738709 | None:intergenic | 45.0% | |
| TAAGCACATAGGGGACTGTT+TGG | - | chr3_1:8738690-8738709 | Msa0347590:intron | 45.0% | |
| AAGCACATAGGGGACTGTTT+GGG | - | chr3_1:8738691-8738710 | Msa0347590:intron | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | + | chr3_1:8739014-8739033 | None:intergenic | 45.0% | |
| ATTAGTCCAGCACAGACACT+TGG | - | chr3_1:8739014-8739033 | Msa0347590:intron | 45.0% | |
| ! | TGGCGGATATATAGTTACGG+TGG | - | chr3_1:8739073-8739092 | Msa0347590:intron | 45.0% |
| CGACCGAAATCAAATAGGAG+TGG | - | chr3_1:8739226-8739245 | Msa0347590:intron | 45.0% | |
| GTAGGAAAATTGGGTTTGCG+TGG | - | chr3_1:8739321-8739340 | Msa0347590:intron | 45.0% | |
| CAACCGCGGATAGCAAAAAA+TGG | + | chr3_1:8739768-8739787 | None:intergenic | 45.0% | |
| !!! | CATTTTTTGCTATCCGCGGT+TGG | - | chr3_1:8739766-8739785 | Msa0347590:intron | 45.0% |
| GTTTCGCAAATGACAGGCTA+AGG | + | chr3_1:8739845-8739864 | None:intergenic | 45.0% | |
| AAGGCAGTTTCGCAAATGAC+AGG | + | chr3_1:8739851-8739870 | None:intergenic | 45.0% | |
| TGTCAGAGTGTGTGAAAGGA+AGG | - | chr3_1:8739948-8739967 | Msa0347590:intron | 45.0% | |
| ! | ACATTTGAGATTGCTCCCAC+AGG | - | chr3_1:8740028-8740047 | Msa0347590:intron | 45.0% |
| !!! | ATTTAAAAATTGAATTTTTT+TGG | - | chr3_1:8735808-8735827 | Msa0347590:intron | 5.0% |
| AGATCAGAGTAAGGTGCGGT+TGG | + | chr3_1:8735359-8735378 | None:intergenic | 50.0% | |
| TTCGAACTCAGGTGAAGCCA+AGG | + | chr3_1:8735907-8735926 | None:intergenic | 50.0% | |
| ! | ATTTCGGTGGGTTCGAACTC+AGG | + | chr3_1:8735918-8735937 | None:intergenic | 50.0% |
| CCCACCGAAATAAGAACCCT+TGG | - | chr3_1:8735927-8735946 | Msa0347590:intron | 50.0% | |
| ! | GCCAAGGGTTCTTATTTCGG+TGG | + | chr3_1:8735931-8735950 | None:intergenic | 50.0% |
| GTGGACTCATCAAGTGCCAA+GGG | + | chr3_1:8735946-8735965 | None:intergenic | 50.0% | |
| ! | AGTGGACTCATCAAGTGCCA+AGG | + | chr3_1:8735947-8735966 | None:intergenic | 50.0% |
| AAGCTGTGGGATAACCAGAG+TGG | + | chr3_1:8735965-8735984 | None:intergenic | 50.0% | |
| GTTCAAAGGGCTGAAGCTGT+GGG | + | chr3_1:8735978-8735997 | None:intergenic | 50.0% | |
| ACAGCTTCAGCCCTTTGAAC+CGG | - | chr3_1:8735978-8735997 | Msa0347590:intron | 50.0% | |
| TTCAGCCCTTTGAACCGGAT+AGG | - | chr3_1:8735983-8736002 | Msa0347590:intron | 50.0% | |
| !! | AGGACTAATCCCTGATTCGG+CGG | - | chr3_1:8736003-8736022 | Msa0347590:intron | 50.0% |
| ! | GTTCAGTCTCACGCGGATTT+TGG | + | chr3_1:8736460-8736479 | None:intergenic | 50.0% |
| AGTGGCTTACCCCCTATAGT+AGG | + | chr3_1:8737362-8737381 | None:intergenic | 50.0% | |
| AAGAGGTGATGCAGGTCTAG+TGG | + | chr3_1:8737380-8737399 | None:intergenic | 50.0% | |
| CTTCAACGAAGAGGTGATGC+AGG | + | chr3_1:8737388-8737407 | None:intergenic | 50.0% | |
| !! | ACTAACCAGGTGTTGAGGGA+GGG | + | chr3_1:8737807-8737826 | None:intergenic | 50.0% |
| GGACTGTTTGGGAGAGCTTA+TGG | - | chr3_1:8738702-8738721 | Msa0347590:intron | 50.0% | |
| GAAGAACCAAGTGTCTGTGC+TGG | + | chr3_1:8739023-8739042 | None:intergenic | 50.0% | |
| ! | ACACTTGGTTCTTCAGTGCG+TGG | - | chr3_1:8739029-8739048 | Msa0347590:intron | 50.0% |
| CTTTCAGCTGTTCAGAACCC+AGG | + | chr3_1:8739100-8739119 | None:intergenic | 50.0% | |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | - | chr3_1:8739098-8739117 | Msa0347590:intron | 50.0% |
| ! | GCAAAATGAGGGCTTTAGCC+TGG | + | chr3_1:8739282-8739301 | None:intergenic | 50.0% |
| ! | GGCTAAAGCCCTCATTTTGC+AGG | - | chr3_1:8739282-8739301 | Msa0347590:intron | 50.0% |
| CCTTGTGGCCTGCAAAATGA+GGG | + | chr3_1:8739293-8739312 | None:intergenic | 50.0% | |
| TCCTTGTGGCCTGCAAAATG+AGG | + | chr3_1:8739294-8739313 | None:intergenic | 50.0% | |
| GGCCACAAGGAGCAATTAGT+AGG | - | chr3_1:8739303-8739322 | Msa0347590:intron | 50.0% | |
| GGAAAATTGGGTTTGCGTGG+AGG | - | chr3_1:8739324-8739343 | Msa0347590:intron | 50.0% | |
| TCTGACAGACCCAGAAAGAC+AGG | - | chr3_1:8739349-8739368 | Msa0347590:intron | 50.0% | |
| GTGCGGTTGGAGGAGGATAA+GGG | + | chr3_1:8735346-8735365 | None:intergenic | 55.0% | |
| TCAGAGTAAGGTGCGGTTGG+AGG | + | chr3_1:8735356-8735375 | None:intergenic | 55.0% | |
| GGCACTTGATGAGTCCACTC+TGG | - | chr3_1:8735948-8735967 | Msa0347590:intron | 55.0% | |
| GGTTCAAAGGGCTGAAGCTG+TGG | + | chr3_1:8735979-8735998 | None:intergenic | 55.0% | |
| TCAGAGTAGAGAGCGGTTGG+AGG | + | chr3_1:8736500-8736519 | None:intergenic | 55.0% | |
| AGGTCAGAGTAGAGAGCGGT+TGG | + | chr3_1:8736503-8736522 | None:intergenic | 55.0% | |
| !! | CACTAACCAGGTGTTGAGGG+AGG | + | chr3_1:8737808-8737827 | None:intergenic | 55.0% |
| GATAGCAGCACCGTCCGTAT+TGG | + | chr3_1:8737941-8737960 | None:intergenic | 55.0% | |
| ! | CCCTCATTTTGCAGGCCACA+AGG | - | chr3_1:8739290-8739309 | Msa0347590:intron | 55.0% |
| GGAATCAGTGTTGCCAACCG+CGG | + | chr3_1:8739782-8739801 | None:intergenic | 55.0% | |
| CCATTGAGGAGCTGAACCGT+TGG | + | chr3_1:8740676-8740695 | None:intergenic | 55.0% | |
| CCAACGGTTCAGCTCCTCAA+TGG | - | chr3_1:8740673-8740692 | Msa0347590:intron | 55.0% | |
| GGTGCGGTTGGAGGAGGATA+AGG | + | chr3_1:8735347-8735366 | None:intergenic | 60.0% | |
| GAGTAAGGTGCGGTTGGAGG+AGG | + | chr3_1:8735353-8735372 | None:intergenic | 60.0% | |
| TGTACAACGGTCACGCGTGC+AGG | + | chr3_1:8736127-8736146 | None:intergenic | 60.0% | |
| GAGCGGTTGGAGGAGGACAA+AGG | + | chr3_1:8736490-8736509 | None:intergenic | 60.0% | |
| GAGTAGAGAGCGGTTGGAGG+AGG | + | chr3_1:8736497-8736516 | None:intergenic | 60.0% | |
| CAAGTCCCTCCCTCAACACC+TGG | - | chr3_1:8737799-8737818 | Msa0347590:intron | 60.0% | |
| GCTATTGCGCTGCTGCGTAG+CGG | - | chr3_1:8739727-8739746 | Msa0347590:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 8735263 | 8740958 | 8735263 | ID=Msa0347590;Name=Msa0347590 |
| chr3_1 | mRNA | 8735263 | 8740958 | 8735263 | ID=Msa0347590-mRNA-1;Parent=Msa0347590;Name=Msa0347590-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.5|0.42|1|0.66|0.42|7|170|268 |
| chr3_1 | exon | 8735263 | 8735612 | 8735263 | ID=Msa0347590-mRNA-1:exon:2540;Parent=Msa0347590-mRNA-1 |
| chr3_1 | exon | 8736851 | 8736938 | 8736851 | ID=Msa0347590-mRNA-1:exon:2539;Parent=Msa0347590-mRNA-1 |
| chr3_1 | exon | 8737095 | 8737197 | 8737095 | ID=Msa0347590-mRNA-1:exon:2538;Parent=Msa0347590-mRNA-1 |
| chr3_1 | exon | 8738242 | 8738319 | 8738242 | ID=Msa0347590-mRNA-1:exon:2537;Parent=Msa0347590-mRNA-1 |
| chr3_1 | exon | 8738401 | 8738560 | 8738401 | ID=Msa0347590-mRNA-1:exon:2536;Parent=Msa0347590-mRNA-1 |
| chr3_1 | exon | 8738788 | 8738813 | 8738788 | ID=Msa0347590-mRNA-1:exon:2535;Parent=Msa0347590-mRNA-1 |
| chr3_1 | exon | 8740787 | 8740958 | 8740787 | ID=Msa0347590-mRNA-1:exon:2534;Parent=Msa0347590-mRNA-1 |
| chr3_1 | CDS | 8740787 | 8740958 | 8740787 | ID=Msa0347590-mRNA-1:cds;Parent=Msa0347590-mRNA-1 |
| chr3_1 | CDS | 8738788 | 8738813 | 8738788 | ID=Msa0347590-mRNA-1:cds;Parent=Msa0347590-mRNA-1 |
| chr3_1 | CDS | 8738401 | 8738560 | 8738401 | ID=Msa0347590-mRNA-1:cds;Parent=Msa0347590-mRNA-1 |
| chr3_1 | CDS | 8738242 | 8738319 | 8738242 | ID=Msa0347590-mRNA-1:cds;Parent=Msa0347590-mRNA-1 |
| chr3_1 | CDS | 8737095 | 8737197 | 8737095 | ID=Msa0347590-mRNA-1:cds;Parent=Msa0347590-mRNA-1 |
| chr3_1 | CDS | 8736851 | 8736938 | 8736851 | ID=Msa0347590-mRNA-1:cds;Parent=Msa0347590-mRNA-1 |
| chr3_1 | CDS | 8735433 | 8735612 | 8735433 | ID=Msa0347590-mRNA-1:cds;Parent=Msa0347590-mRNA-1 |
| chr3_1 | three_prime_UTR | 8735263 | 8735432 | 8735263 | ID=Msa0347590-mRNA-1:three_prime_utr;Parent=Msa0347590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
