AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0348390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348390 MtrunA17_Chr3g0080761 95.994 649 19 4 1 643 1 648 0.0 1295
Msa0348390 MtrunA17_Chr8g0354821 59.613 671 221 9 15 640 4 669 0.0 821
Msa0348390 MtrunA17_Chr3g0080601 92.761 373 11 1 644 1000 572 944 0.0 697
Msa0348390 MtrunA17_Chr7g0255181 46.294 715 294 15 1 646 1 694 0.0 619
Msa0348390 MtrunA17_Chr3g0080771 73.670 376 83 1 642 1001 570 945 3.84e-175 535
Msa0348390 MtrunA17_Chr3g0080791 74.202 376 81 1 642 1001 570 945 1.21e-171 526
Msa0348390 MtrunA17_Chr3g0094301 72.872 376 86 1 642 1001 571 946 3.61e-171 525
Msa0348390 MtrunA17_Chr7g0229761 72.872 376 86 1 642 1001 571 946 3.61e-171 525
Msa0348390 MtrunA17_Chr3g0080741 65.957 376 112 1 642 1001 573 948 7.10e-163 503
Msa0348390 MtrunA17_Chr3g0080631 65.691 376 113 1 642 1001 526 901 2.08e-160 495
Msa0348390 MtrunA17_Chr3g0080721 65.426 376 114 1 642 1001 307 682 2.20e-158 483
Msa0348390 MtrunA17_Chr3g0080731 68.085 376 104 1 642 1001 571 946 1.16e-157 489
Msa0348390 MtrunA17_Chr3g0080751 63.441 372 120 1 642 997 572 943 8.30e-148 464
Msa0348390 MtrunA17_Chr3g0080651 64.439 374 118 1 642 1000 487 860 2.79e-142 447
Msa0348390 MtrunA17_Chr3g0084361 77.823 248 55 0 754 1001 17 264 8.27e-120 367
Msa0348390 MtrunA17_Chr5g0399801 42.043 509 275 12 125 630 567 1058 7.11e-114 377
Msa0348390 MtrunA17_Chr3g0081391 51.070 374 166 2 642 998 570 943 4.05e-113 372
Msa0348390 MtrunA17_Chr3g0081341 52.703 370 158 2 642 994 634 1003 2.11e-112 371
Msa0348390 MtrunA17_Chr8g0368911 40.756 476 250 12 172 631 290 749 4.71e-107 351
Msa0348390 MtrunA17_Chr4g0003501 40.668 509 279 14 125 630 436 924 6.38e-107 355
Msa0348390 MtrunA17_Chr8g0368901 41.239 468 255 12 174 631 299 756 7.99e-107 350
Msa0348390 MtrunA17_Chr4g0003511 40.275 509 283 13 125 630 531 1021 3.35e-105 352
Msa0348390 MtrunA17_Chr1g0163051 37.058 537 299 14 108 631 135 645 5.36e-104 339
Msa0348390 MtrunA17_Chr3g0081371 52.151 372 159 3 642 994 574 945 1.39e-103 346
Msa0348390 MtrunA17_Chr3g0081211 53.514 370 155 2 642 994 569 938 2.73e-102 342
Msa0348390 MtrunA17_Chr8g0369301 36.397 544 306 14 111 631 210 736 3.79e-102 337
Msa0348390 MtrunA17_Chr3g0081191 50.272 368 166 2 649 999 573 940 9.02e-101 338
Msa0348390 MtrunA17_Chr3g0081361 50.140 357 160 3 647 985 580 936 1.73e-98 333
Msa0348390 MtrunA17_Chr1g0151481 49.307 361 169 3 647 994 580 939 8.38e-96 324
Msa0348390 MtrunA17_Chr3g0101321 47.633 338 169 3 647 976 566 903 2.46e-91 311
Msa0348390 MtrunA17_Chr6g0476111 37.526 485 264 13 171 631 195 664 3.51e-91 305
Msa0348390 MtrunA17_Chr3g0081181 49.863 365 166 2 647 994 559 923 2.17e-90 309
Msa0348390 MtrunA17_Chr1g0163041 34.570 512 301 14 139 631 68 564 4.33e-89 296
Msa0348390 MtrunA17_Chr6g0476121 36.701 485 268 13 171 631 144 613 2.11e-88 296
Msa0348390 MtrunA17_Chr3g0101011 47.429 350 168 6 647 981 590 938 4.43e-87 300
Msa0348390 MtrunA17_Chr6g0467381 35.115 524 289 13 139 631 60 563 4.80e-87 291
Msa0348390 MtrunA17_Chr7g0252211 37.292 480 277 10 169 631 255 727 6.81e-87 295
Msa0348390 MtrunA17_Chr6g0467531 35.115 524 289 13 139 631 60 563 1.40e-86 289
Msa0348390 MtrunA17_Chr6g0467421 34.924 524 290 13 139 631 60 563 1.52e-86 289
Msa0348390 MtrunA17_Chr6g0467401 34.924 524 290 13 139 631 60 563 4.91e-85 285
Msa0348390 MtrunA17_Chr3g0094881 35.400 500 287 13 145 633 150 624 1.02e-81 278
Msa0348390 MtrunA17_Chr5g0410021 39.837 369 200 6 645 993 555 921 6.77e-71 254
Msa0348390 MtrunA17_Chr5g0409991 40.217 368 200 7 645 993 553 919 1.92e-70 253
Msa0348390 MtrunA17_Chr3g0081201 52.632 228 107 1 773 999 2 229 8.22e-70 232
Msa0348390 MtrunA17_Chr6g0467411 33.129 489 277 13 155 631 31 481 4.17e-69 239
Msa0348390 MtrunA17_Chr2g0306961 31.641 512 277 11 139 633 9 464 2.83e-68 236
Msa0348390 MtrunA17_Chr3g0101231 43.099 355 179 6 644 978 577 928 4.25e-68 246
Msa0348390 MtrunA17_Chr5g0409971 40.771 363 194 5 650 993 564 924 1.66e-67 244
Msa0348390 MtrunA17_Chr3g0101201 42.450 351 182 7 646 978 572 920 1.24e-66 241
Msa0348390 MtrunA17_Chr3g0101391 41.066 319 175 5 647 952 259 577 1.35e-66 234
Msa0348390 MtrunA17_Chr3g0101271 40.936 342 192 2 647 978 545 886 6.11e-66 239
Msa0348390 MtrunA17_Chr1g0189281 44.728 313 155 6 647 944 64 373 7.50e-66 226
Msa0348390 MtrunA17_Chr3g0101241 40.936 342 192 2 647 978 545 886 1.23e-65 238
Msa0348390 MtrunA17_Chr3g0101331 42.368 321 167 5 650 952 585 905 4.04e-63 231
Msa0348390 MtrunA17_Chr5g0410001 37.569 362 207 7 658 1001 571 931 5.65e-63 231
Msa0348390 MtrunA17_Chr1g0170651 34.130 460 248 11 189 630 98 520 4.57e-62 221
Msa0348390 MtrunA17_Chr1g0160871 66.452 155 32 2 709 847 1 151 2.62e-60 202
Msa0348390 MtrunA17_Chr5g0410031 38.081 344 193 6 658 981 573 916 9.26e-60 221
Msa0348390 MtrunA17_Chr3g0112511 37.596 391 223 6 601 978 518 900 4.61e-59 219
Msa0348390 MtrunA17_Chr3g0101361 38.108 370 191 6 645 978 401 768 6.78e-59 216
Msa0348390 MtrunA17_Chr3g0100831 37.838 333 198 5 652 978 576 905 4.68e-57 213
Msa0348390 MtrunA17_Chr7g0232811 29.808 520 255 17 135 630 75 508 1.36e-56 205
Msa0348390 MtrunA17_Chr1g0189351 41.088 331 166 8 647 952 573 899 7.85e-56 209
Msa0348390 MtrunA17_Chr3g0100731 37.288 354 202 6 633 978 324 665 1.67e-55 205
Msa0348390 MtrunA17_Chr3g0101221 40.857 350 183 7 649 978 577 922 2.34e-55 208
Msa0348390 MtrunA17_Chr3g0101251 38.592 355 192 6 645 978 533 882 5.16e-54 204
Msa0348390 MtrunA17_Chr3g0100791 36.970 330 200 4 649 972 111 438 6.84e-54 195
Msa0348390 MtrunA17_Chr3g0100701 38.304 342 196 7 649 981 405 740 2.28e-53 200
Msa0348390 MtrunA17_Chr7g0232981 29.821 503 254 16 135 630 75 485 2.22e-52 192
Msa0348390 MtrunA17_Chr3g0101181 37.971 345 190 6 645 965 577 921 4.01e-52 198
Msa0348390 MtrunA17_Chr5g0444301 42.675 314 164 6 647 946 131 442 2.07e-51 187
Msa0348390 MtrunA17_Chr3g0100851 36.061 330 203 4 649 972 452 779 2.98e-51 194
Msa0348390 MtrunA17_Chr3g0100961 34.085 355 219 6 644 992 569 914 3.30e-49 189
Msa0348390 MtrunA17_Chr7g0232841 29.175 521 243 20 135 630 78 497 4.40e-49 183
Msa0348390 MtrunA17_Chr3g0100911 43.668 229 122 3 703 924 2 230 3.34e-48 171
Msa0348390 MtrunA17_Chr3g0100801 37.751 249 145 3 649 896 532 771 4.21e-41 162
Msa0348390 MtrunA17_Chr3g0081841 57.547 106 45 0 775 880 383 488 9.66e-30 124
Msa0348390 MtrunA17_Chr1g0149071 45.570 158 79 3 745 898 298 452 2.22e-29 122
Msa0348390 MtrunA17_Chr3g0100681 39.901 203 112 5 642 837 383 582 3.23e-29 124
Msa0348390 MtrunA17_Chr2g0299001 29.971 347 225 8 649 989 594 928 4.73e-29 125
Msa0348390 MtrunA17_Chr3g0101161 38.889 198 104 3 787 978 2 188 4.84e-29 115
Msa0348390 MtrunA17_Chr5g0403241 31.507 292 154 8 370 630 1207 1483 8.54e-29 125
Msa0348390 MtrunA17_Chr1g0190311 27.358 318 159 10 372 635 325 624 4.69e-28 121
Msa0348390 MtrunA17_Chr8g0373821 28.889 315 179 8 359 647 237 532 1.07e-26 115
Msa0348390 MtrunA17_Chr1g0183321 28.526 312 155 9 372 633 428 721 3.25e-26 115
Msa0348390 MtrunA17_Chr1g0197181 29.050 358 207 12 633 952 158 506 3.31e-25 111
Msa0348390 MtrunA17_Chr5g0404741 29.355 310 212 5 653 955 578 887 3.62e-24 109
Msa0348390 MtrunA17_Chr4g0075321 33.962 212 108 5 445 643 869 1061 5.76e-24 109
Msa0348390 MtrunA17_Chr7g0262001 27.653 311 163 6 367 631 381 675 5.90e-24 108
Msa0348390 MtrunA17_Chr3g0084351 84.746 59 9 0 642 700 496 554 1.18e-23 106
Msa0348390 MtrunA17_Chr1g0197241 28.367 349 207 11 633 952 1199 1533 1.85e-23 107
Msa0348390 MtrunA17_Chr1g0197201 27.778 342 203 10 659 966 1023 1354 6.85e-23 105
Msa0348390 MtrunA17_Chr1g0189331 44.037 109 55 2 745 849 3 109 2.53e-19 84.3
Msa0348390 MtrunA17_Chr3g0100971 35.897 156 93 3 655 803 579 734 3.62e-19 93.2
Msa0348390 MtrunA17_Chr3g0100761 35.897 156 93 3 655 803 539 694 3.65e-19 93.2
Msa0348390 MtrunA17_Chr7g0219851 28.324 346 212 11 658 977 601 936 3.92e-19 93.6
Msa0348390 MtrunA17_Chr1g0189341 50.000 86 41 1 867 952 1 84 5.14e-18 80.9
Msa0348390 MtrunA17_Chr3g0100981 44.068 118 64 1 859 976 20 135 1.03e-16 78.2
Msa0348390 MtrunA17_Chr3g0100771 44.068 118 64 1 859 976 20 135 1.03e-16 78.2
Msa0348390 MtrunA17_Chr3g0100691 44.444 117 63 1 859 975 20 134 8.90e-15 72.4
Msa0348390 MtrunA17_Chr3g0085711 28.169 355 214 16 655 974 132 480 3.45e-14 77.0
Msa0348390 MtrunA17_Chr2g0305371 29.756 205 107 6 463 665 314 483 1.32e-13 74.7
Msa0348390 MtrunA17_Chr3g0085751 26.796 362 220 15 655 979 560 913 2.76e-13 74.7
Msa0348390 MtrunA17_Chr3g0082101 26.744 258 157 11 623 852 496 749 3.74e-13 73.9
Msa0348390 MtrunA17_Chr3g0085521 28.212 358 210 17 655 974 557 905 9.60e-13 72.8
Msa0348390 MtrunA17_Chr3g0085131 27.469 324 198 11 655 951 562 875 1.20e-12 72.4
Msa0348390 MtrunA17_Chr3g0085451 28.750 320 197 14 655 947 549 864 1.37e-12 72.4
Msa0348390 MtrunA17_Chr7g0232751 40.244 82 47 1 549 630 9 88 1.44e-12 65.5
Msa0348390 MtrunA17_Chr3g0082791 28.530 347 212 14 655 974 577 914 2.01e-12 71.6
Msa0348390 MtrunA17_Chr8g0344071 27.445 317 202 8 661 959 846 1152 3.80e-12 70.9
Msa0348390 MtrunA17_Chr3g0084031 26.966 356 221 16 655 979 578 925 7.93e-12 69.7
Msa0348390 MtrunA17_Chr3g0085111 26.629 353 224 14 658 979 566 914 9.21e-12 69.7
Msa0348390 MtrunA17_Chr3g0085161 27.119 354 219 15 655 974 426 774 1.00e-11 69.3
Msa0348390 MtrunA17_Chr3g0091011 28.746 327 198 15 655 951 544 865 1.81e-11 68.6
Msa0348390 MtrunA17_Chr8g0389931 29.630 162 98 4 199 352 261 414 1.89e-11 68.2
Msa0348390 MtrunA17_Chr1g0164611 28.054 221 132 10 655 852 585 801 2.22e-11 68.2
Msa0348390 MtrunA17_Chr3g0085551 26.400 250 140 8 655 884 452 677 2.50e-11 67.8
Msa0348390 MtrunA17_Chr3g0085091 26.496 351 219 15 658 974 571 916 2.93e-11 67.8
Msa0348390 MtrunA17_Chr3g0086741 26.316 304 173 10 655 932 589 867 3.53e-11 67.4
Msa0348390 MtrunA17_Chr7g0232871 38.667 75 39 2 477 547 16 87 5.39e-11 60.8
Msa0348390 MtrunA17_Chr3g0087731 29.767 215 127 10 655 849 366 576 5.41e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348390 AT5G04940.2 56.591 569 227 7 70 638 98 646 0.0 669
Msa0348390 AT5G04940.1 56.591 569 227 7 70 638 98 646 0.0 669
Msa0348390 AT1G73100.1 51.698 648 276 9 6 631 6 638 0.0 667
Msa0348390 AT1G17770.1 42.857 553 285 11 98 638 134 667 9.75e-142 440
Msa0348390 AT2G24740.1 44.706 510 237 13 129 631 252 723 2.33e-135 426
Msa0348390 AT4G13460.1 38.933 506 283 13 139 631 145 637 9.71e-105 341
Msa0348390 AT4G13460.2 38.933 506 283 13 139 631 145 637 9.71e-105 341
Msa0348390 AT2G35160.5 38.061 557 292 16 80 630 218 727 1.70e-104 343
Msa0348390 AT2G33290.1 38.976 508 296 8 139 640 149 648 3.72e-104 340
Msa0348390 AT2G33290.3 38.976 508 296 8 139 640 149 648 3.72e-104 340
Msa0348390 AT2G33290.4 38.976 508 296 8 139 640 149 648 3.72e-104 340
Msa0348390 AT2G33290.2 38.976 508 296 8 139 640 149 648 3.72e-104 340
Msa0348390 AT2G35160.2 38.061 557 292 16 80 630 254 763 5.48e-104 343
Msa0348390 AT2G35160.3 38.061 557 292 16 80 630 254 763 5.48e-104 343
Msa0348390 AT2G35160.1 38.061 557 292 16 80 630 254 763 5.48e-104 343
Msa0348390 AT2G35160.4 38.061 557 292 16 80 630 254 763 5.48e-104 343
Msa0348390 AT2G22740.2 38.218 505 284 12 139 630 270 759 2.18e-99 331
Msa0348390 AT2G22740.1 38.218 505 284 12 139 630 270 759 2.18e-99 331
Msa0348390 AT5G13960.2 36.739 460 260 13 192 631 12 460 7.50e-85 283
Msa0348390 AT5G13960.1 36.739 460 260 13 192 631 146 594 1.48e-84 286
Msa0348390 AT2G05900.1 41.176 221 121 4 212 428 1 216 6.35e-44 162
Msa0348390 AT2G05900.1 60.656 61 24 0 577 637 236 296 1.55e-18 88.2
Msa0348390 AT5G47150.1 41.589 214 113 5 139 347 118 324 1.09e-40 153
Msa0348390 AT3G07040.1 28.902 346 222 7 653 976 566 909 1.87e-38 155
Msa0348390 AT5G47160.1 38.153 249 141 7 103 344 166 408 1.38e-33 135
Msa0348390 AT5G47160.3 38.153 249 141 7 103 344 166 408 1.38e-33 135
Msa0348390 AT5G47160.2 38.153 249 141 7 103 344 166 408 1.38e-33 135
Msa0348390 AT3G04380.2 27.302 315 165 7 372 638 117 415 2.14e-32 132
Msa0348390 AT3G04380.6 27.302 315 165 7 372 638 117 415 2.35e-32 132
Msa0348390 AT3G04380.1 27.302 315 165 7 372 638 144 442 2.64e-32 132
Msa0348390 AT3G04380.3 27.302 315 165 7 372 638 128 426 2.64e-32 132
Msa0348390 AT3G04380.5 27.302 315 165 7 372 638 101 399 2.75e-32 132
Msa0348390 AT3G04380.4 27.302 315 165 7 372 638 144 442 2.78e-32 132
Msa0348390 AT2G23740.1 32.990 291 147 14 368 631 1080 1349 4.14e-29 126
Msa0348390 AT2G23740.3 32.990 291 147 14 368 631 1087 1356 5.06e-29 126
Msa0348390 AT2G23740.6 32.990 291 147 14 368 631 1087 1356 5.06e-29 126
Msa0348390 AT2G23740.2 32.990 291 147 14 368 631 1087 1356 5.06e-29 126
Msa0348390 AT1G04050.2 28.660 321 159 10 372 642 407 707 2.99e-28 122
Msa0348390 AT1G04050.1 28.660 321 159 10 372 642 407 707 2.99e-28 122
Msa0348390 AT1G04050.3 27.841 352 172 11 341 642 284 603 3.31e-28 122
Msa0348390 AT5G43990.3 28.387 310 149 11 372 631 393 679 1.12e-27 120
Msa0348390 AT5G43990.11 28.387 310 149 11 372 631 393 679 1.12e-27 120
Msa0348390 AT5G43990.1 28.387 310 149 11 372 631 393 679 1.12e-27 120
Msa0348390 AT5G43990.4 28.387 310 149 11 372 631 393 679 1.12e-27 120
Msa0348390 AT5G43990.16 28.387 310 149 11 372 631 373 659 1.17e-27 120
Msa0348390 AT5G43990.5 28.387 310 149 11 372 631 373 659 1.17e-27 120
Msa0348390 AT5G43990.17 28.387 310 149 11 372 631 373 659 1.17e-27 120
Msa0348390 AT5G43990.14 28.387 310 149 11 372 631 373 659 1.17e-27 120
Msa0348390 AT5G43990.15 28.387 310 149 11 372 631 396 682 1.28e-27 120
Msa0348390 AT5G43990.10 28.387 310 149 11 372 631 396 682 1.28e-27 120
Msa0348390 AT5G43990.7 28.387 310 149 11 372 631 304 590 1.32e-27 120
Msa0348390 AT5G43990.8 28.387 310 149 11 372 631 324 610 1.35e-27 120
Msa0348390 AT5G43990.12 28.387 310 149 11 372 631 324 610 1.35e-27 120
Msa0348390 AT5G43990.6 28.387 310 149 11 372 631 324 610 1.35e-27 120
Msa0348390 AT5G43990.13 28.387 310 149 11 372 631 324 610 1.35e-27 120
Msa0348390 AT5G43990.9 28.387 310 149 11 372 631 416 702 1.35e-27 120
Msa0348390 AT5G43990.2 28.387 310 149 11 372 631 416 702 1.35e-27 120
Msa0348390 AT3G03750.2 32.683 205 116 6 435 637 145 329 5.32e-21 96.3
Msa0348390 AT2G23740.4 32.530 249 120 14 368 589 1087 1314 2.18e-20 98.2
Msa0348390 AT2G23740.5 32.530 249 120 14 368 589 1087 1314 2.18e-20 98.2
Msa0348390 AT1G59780.1 27.139 339 216 10 650 976 565 884 2.68e-19 94.4
Msa0348390 AT1G59780.2 27.139 339 216 10 650 976 560 879 3.76e-19 94.0
Msa0348390 AT5G35450.2 24.848 330 228 8 659 976 569 890 5.11e-19 93.6
Msa0348390 AT5G35450.1 24.848 330 228 8 659 976 569 890 5.11e-19 93.6
Msa0348390 AT1G58390.1 26.549 339 224 10 649 976 575 899 5.74e-19 93.2
Msa0348390 AT1G58390.2 26.549 339 224 10 649 976 575 899 5.74e-19 93.2
Msa0348390 AT1G58400.3 26.549 339 231 7 649 976 572 903 1.38e-18 92.0
Msa0348390 AT1G58400.2 26.549 339 231 7 649 976 572 903 1.38e-18 92.0
Msa0348390 AT1G58400.1 26.549 339 231 7 649 976 562 893 1.48e-18 92.0
Msa0348390 AT5G43470.3 25.982 331 226 8 659 976 577 901 3.74e-18 90.5
Msa0348390 AT5G43470.2 25.982 331 226 8 659 976 577 901 3.74e-18 90.5
Msa0348390 AT5G43470.4 25.982 331 226 8 659 976 577 901 3.74e-18 90.5
Msa0348390 AT5G43470.1 25.982 331 226 8 659 976 577 901 3.74e-18 90.5
Msa0348390 AT1G59620.2 23.952 334 216 7 655 976 430 737 1.15e-16 85.5
Msa0348390 AT5G48620.6 25.982 331 226 8 659 976 577 901 1.56e-16 85.5
Msa0348390 AT5G48620.1 25.982 331 226 8 659 976 577 901 1.56e-16 85.5
Msa0348390 AT5G48620.4 25.982 331 226 8 659 976 577 901 1.56e-16 85.5
Msa0348390 AT5G48620.2 25.982 331 226 8 659 976 577 901 1.56e-16 85.5
Msa0348390 AT5G48620.3 25.982 331 226 8 659 976 577 901 1.56e-16 85.5
Msa0348390 AT5G48620.5 25.982 331 226 8 659 976 577 901 1.56e-16 85.5
Msa0348390 AT3G03750.1 29.064 203 110 6 435 637 145 313 1.17e-14 77.0
Msa0348390 AT1G76710.2 31.383 188 84 6 462 641 66 216 1.23e-13 75.1
Msa0348390 AT1G76710.1 31.383 188 84 6 462 641 66 216 1.23e-13 75.1
Msa0348390 AT1G76710.4 31.383 188 84 6 462 641 66 216 1.53e-13 75.1
Msa0348390 AT1G76710.3 31.383 188 84 6 462 641 66 216 1.53e-13 75.1
Msa0348390 AT1G59218.1 26.214 309 200 10 643 934 570 867 1.58e-13 75.9
Msa0348390 AT1G59218.1 26.064 376 189 13 642 936 598 965 5.65e-11 67.4
Msa0348390 AT1G59218.2 26.214 309 200 10 643 934 570 867 1.58e-13 75.9
Msa0348390 AT1G59218.2 26.064 376 189 13 642 936 598 965 5.65e-11 67.4
Msa0348390 AT1G59218.3 26.214 309 200 10 643 934 570 867 1.58e-13 75.9
Msa0348390 AT1G59218.3 26.064 376 189 13 642 936 598 965 5.65e-11 67.4
Msa0348390 AT1G58848.1 26.214 309 200 10 643 934 570 867 1.58e-13 75.9
Msa0348390 AT1G58848.1 26.064 376 189 13 642 936 598 965 5.65e-11 67.4
Msa0348390 AT1G58848.2 26.214 309 200 10 643 934 570 867 1.58e-13 75.9
Msa0348390 AT1G58848.2 26.064 376 189 13 642 936 598 965 5.65e-11 67.4
Msa0348390 AT1G53350.1 24.625 333 228 7 659 976 575 899 1.68e-12 72.4
Msa0348390 AT4G30860.1 29.762 168 86 4 463 630 307 442 4.37e-12 70.1
Msa0348390 AT1G77300.2 28.249 177 97 4 466 642 1008 1154 1.46e-11 69.3
Msa0348390 AT3G59960.3 26.816 179 86 5 485 659 112 249 2.03e-11 66.6
Msa0348390 AT3G59960.2 26.816 179 86 5 485 659 112 249 2.03e-11 66.6
Msa0348390 AT3G59960.4 26.816 179 86 5 485 659 112 249 2.03e-11 66.6
Msa0348390 AT1G77300.1 28.249 177 97 4 466 642 1008 1154 2.21e-11 68.9
Msa0348390 AT3G59960.1 26.816 179 86 5 485 659 112 249 4.70e-11 65.9

Find 228 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCATAATCATAGTATTT+TGG 0.097099 3_1:+10615333 None:intergenic
TGAACAAGACACTCAAATTT+TGG 0.164472 3_1:+10615762 None:intergenic
ACTTAGAGACATTGGATTTA+AGG 0.167904 3_1:-10616218 Msa0348390:CDS
CTCTCTTGAAAATCTTAAAT+TGG 0.191179 3_1:-10615532 Msa0348390:CDS
TCTTCAGGTCAGTATCCTTC+TGG 0.204050 3_1:-10618741 Msa0348390:CDS
TCTCATCTCTCAGGACTTCT+TGG 0.219413 3_1:+10615290 None:intergenic
GACTAGAGAAGTTTCCTAAT+TGG 0.234155 3_1:-10615788 Msa0348390:CDS
ACAGGTATCAAACTTCTTAT+AGG 0.235001 3_1:+10618789 None:intergenic
TGTAACTCACCAATAGATTT+AGG 0.242077 3_1:+10616243 None:intergenic
CTCTTGTACTGCAGCACTTA+TGG 0.248020 3_1:+10615920 None:intergenic
CGACTCCACTTCAAGCATTT+AGG 0.258428 3_1:-10618650 Msa0348390:CDS
CAAGCATTTAGGAGCCCTTT+TGG 0.274971 3_1:-10618639 Msa0348390:CDS
CTTAGAGACATTGGATTTAA+GGG 0.276839 3_1:-10616217 Msa0348390:CDS
AGCAGGTACATCCTTTAGTT+TGG 0.279010 3_1:+10615500 None:intergenic
AAATGGAGCCGTTGAAGTTT+TGG 0.287275 3_1:+10615819 None:intergenic
CATTGACAAGTATAAGATTC+TGG 0.293840 3_1:-10618820 Msa0348390:CDS
TTCTCTATAAGGATAGAATT+TGG 0.303748 3_1:+10615567 None:intergenic
GCAGGTACATCCTTTAGTTT+GGG 0.305176 3_1:+10615501 None:intergenic
CTAAGGCAGTTAAGGAAGTT+AGG 0.306163 3_1:-10615975 Msa0348390:CDS
AGAGTGGAAATATGTGAAAA+AGG 0.306165 3_1:+10617675 None:intergenic
TGCATTAAACTGAATGATTT+CGG 0.306178 3_1:+10617643 None:intergenic
CATGAGTTAACATATGATTA+TGG 0.312052 3_1:-10616995 Msa0348390:CDS
TTATATTATCAATGGAGTTC+TGG 0.315928 3_1:-10617527 Msa0348390:CDS
AAATTGAGCTTCAGAAGATT+TGG 0.318505 3_1:+10615681 None:intergenic
AGAACTCCATTGATAATATA+AGG 0.322628 3_1:+10617529 None:intergenic
TCTTCTGAAGCTCAATTTGT+TGG 0.327627 3_1:-10615676 Msa0348390:CDS
GCAAAGCTCCTTTCTCTATA+AGG 0.334827 3_1:+10615556 None:intergenic
ACTGGCGTGCTGATTGAAAA+AGG 0.342903 3_1:-10616084 Msa0348390:intron
TGTATAAAATTCAAGATTCA+TGG 0.343226 3_1:-10617909 Msa0348390:CDS
TTCTTAGCATTTATAATAAG+AGG 0.346128 3_1:+10617151 None:intergenic
AGCATGTGTCCCTGGCGATT+TGG 0.346957 3_1:-10617587 Msa0348390:CDS
CGAATGGAAATGTGTGTTAT+CGG 0.357207 3_1:-10618240 Msa0348390:CDS
CTTCAGGTCAGTATCCTTCT+GGG 0.359790 3_1:-10618740 Msa0348390:CDS
AACCTAGTGCCTTTGCCGTT+TGG 0.360454 3_1:-10617825 Msa0348390:CDS
TTTGGTGCTTCAAACCGGTT+TGG 0.365259 3_1:+10617431 None:intergenic
AGGATAAAGGTTGGGGTCTT+CGG 0.367552 3_1:-10617390 Msa0348390:CDS
TAGGTTTAAAGCATGTTAGA+AGG 0.371015 3_1:-10615956 Msa0348390:CDS
ATTATGTGGAGGTAGATCAT+AGG 0.374673 3_1:-10616028 Msa0348390:intron
TCATAAGGGTAATCTTGCTT+TGG 0.385063 3_1:-10618025 Msa0348390:CDS
AAGGCTCTTCCTAAATCTAT+TGG 0.385771 3_1:-10616252 Msa0348390:CDS
CAAAACAAAGGATAAAGGTT+GGG 0.388648 3_1:-10617398 Msa0348390:CDS
TTGGTGCTTCAAACCGGTTT+GGG 0.391461 3_1:+10617432 None:intergenic
AATCCTCAAGGTCAATCTTC+AGG 0.392097 3_1:-10618756 Msa0348390:CDS
TGTTATAATTTATACCGGTC+AGG 0.396575 3_1:-10618094 Msa0348390:CDS
TGGATCATTGGAGCATTTCA+TGG 0.399580 3_1:-10616403 Msa0348390:CDS
ACTTCATTGACAAGTGATAC+TGG 0.399879 3_1:+10617718 None:intergenic
GTGTTCATTCGTCAATGGTT+AGG 0.400932 3_1:-10615357 Msa0348390:CDS
TCTGCTTTGGGCTCTACCAC+TGG 0.402161 3_1:-10616102 Msa0348390:CDS
TGTGTTTGTTCGAATTCCTT+TGG 0.402301 3_1:+10618317 None:intergenic
GATTGATGCCTTGCATATCC+AGG 0.403598 3_1:-10618193 Msa0348390:CDS
ACTTGAAAGATTCATAAATA+CGG 0.407062 3_1:+10617245 None:intergenic
TGAAAATGCTAAGGCAGTTA+AGG 0.415830 3_1:-10615983 Msa0348390:CDS
CAGTACCTGGAGTTGAGATT+GGG 0.418871 3_1:-10618278 Msa0348390:CDS
ACAGGCTGCCAGAAAACATT+TGG 0.419329 3_1:+10617088 None:intergenic
CATTGACGAATGAACACAAT+AGG 0.419910 3_1:+10615363 None:intergenic
ATTTGGACTGCTCATGCATT+CGG 0.422721 3_1:-10617570 Msa0348390:CDS
TACCATTGTCTCTTTGACCT+GGG 0.423334 3_1:+10618475 None:intergenic
CGAACCTGTGTTCAATTCCT+TGG 0.423917 3_1:+10618380 None:intergenic
TCAGTACCTGGAGTTGAGAT+TGG 0.424381 3_1:-10618279 Msa0348390:CDS
TTCCATTTGGTGCTTCAAAC+CGG 0.425045 3_1:+10617426 None:intergenic
CAATGGTCTTGTCCTTCGTC+TGG 0.425718 3_1:+10615402 None:intergenic
GTGTCTTGTTCAGATTTGTC+TGG 0.426814 3_1:-10615751 Msa0348390:CDS
CCTTTACATTTGTATTCCTT+AGG 0.433789 3_1:+10616271 None:intergenic
ATTATAAATGCTAAGAATGT+TGG 0.437154 3_1:-10617145 Msa0348390:CDS
CATCGCTCTACTTGGCTTTG+CGG 0.438113 3_1:+10618674 None:intergenic
GCTGTTAGCATTGTTTCGTC+AGG 0.439867 3_1:-10618147 Msa0348390:CDS
TCTCTAGTCTAGCTTTCAAA+TGG 0.444835 3_1:+10615802 None:intergenic
AGAATAAGTCCAGTCCTTGC+AGG 0.449322 3_1:+10617772 None:intergenic
AAGGTTGGGGTCTTCGGTCA+TGG 0.451618 3_1:-10617384 Msa0348390:CDS
GCTGGTTTCCCTGCAAGGAC+TGG 0.456055 3_1:-10617781 Msa0348390:CDS
ATGCTCTTAACAAATTCATC+TGG 0.458776 3_1:+10615429 None:intergenic
CAGTGATATTAAATGATTCA+AGG 0.459616 3_1:+10615889 None:intergenic
ATAAAAGCACCAGCACGAAT+AGG 0.460396 3_1:+10617358 None:intergenic
TTACCATTGTCTCTTTGACC+TGG 0.461172 3_1:+10618474 None:intergenic
CTATTGTGTTCATTCGTCAA+TGG 0.462549 3_1:-10615362 Msa0348390:CDS
GTGTTCAAAACAAAGGATAA+AGG 0.462890 3_1:-10617403 Msa0348390:CDS
GTGAATTGTATAATGGAAGA+AGG 0.464015 3_1:-10618876 None:intergenic
TTATGTGGAGGTAGATCATA+GGG 0.465572 3_1:-10616027 Msa0348390:intron
TTGTTGGAGAATGCCTTTGA+TGG 0.466782 3_1:-10615660 Msa0348390:CDS
CGGTTTGCATGCTCAATCGA+TGG 0.470289 3_1:-10618220 Msa0348390:CDS
CATCTCTCAGGACTTCTTGG+TGG 0.471399 3_1:+10615293 None:intergenic
CGATAACACACATTTCCATT+CGG 0.476797 3_1:+10618241 None:intergenic
TATTCTTGCTGACCTCTCCT+CGG 0.477270 3_1:-10617755 Msa0348390:CDS
TTGAAGGTCCTTGACATTCA+AGG 0.479456 3_1:-10616354 Msa0348390:CDS
AGATCCTCATCCTCTCCAAA+AGG 0.481832 3_1:+10618624 None:intergenic
GTATCATGAGGTCCACCAAA+TGG 0.483316 3_1:+10618702 None:intergenic
TTGAAAATCTTAAATTGGAA+AGG 0.484651 3_1:-10615527 Msa0348390:CDS
CTTGAAAGATTCATAAATAC+GGG 0.486596 3_1:+10617246 None:intergenic
GTCAGATCAGAAGCTTCATA+AGG 0.487005 3_1:-10618040 Msa0348390:CDS
CATGAGCAGTCCAAATCGCC+AGG 0.488074 3_1:+10617577 None:intergenic
TTGTCTGGCTTTATCCAAGC+TGG 0.489550 3_1:-10615736 Msa0348390:CDS
ACCTGCTGGCATCAAACACT+TGG 0.491907 3_1:-10615484 Msa0348390:CDS
GTTGATATGAGTGGTTTAGT+TGG 0.492160 3_1:-10618504 Msa0348390:CDS
TGTATAATGGAAGAAGGGTT+AGG 0.492317 3_1:-10618870 None:intergenic
CAGAATCTTATACTTGTCAA+TGG 0.495015 3_1:+10618821 None:intergenic
ATGCAAAATTTCACCATCAA+AGG 0.495721 3_1:+10615647 None:intergenic
TGCATATCCAGGGTGACCGC+GGG 0.500357 3_1:-10618182 Msa0348390:CDS
GTTACATAACTTAGAGACAT+TGG 0.500564 3_1:-10616226 Msa0348390:CDS
TTGTTCTCTTCATATAAGAC+AGG 0.502168 3_1:+10617070 None:intergenic
TAATATCACTGCAATAGAAA+AGG 0.502354 3_1:-10615877 Msa0348390:CDS
TGAAGGTCCTTGACATTCAA+GGG 0.503460 3_1:-10616353 Msa0348390:CDS
TCACAGCATCTTTGATGCCT+CGG 0.503981 3_1:+10617965 None:intergenic
TCCAAGTGTTTGATGCCAGC+AGG 0.504297 3_1:+10615483 None:intergenic
AATTCTATCCTTATAGAGAA+AGG 0.504576 3_1:-10615564 Msa0348390:CDS
GGTTTGCATGCTCAATCGAT+GGG 0.505325 3_1:-10618219 Msa0348390:CDS
TATCATGAGGTCCACCAAAT+GGG 0.505449 3_1:+10618703 None:intergenic
AACCGGTTTGAAGCACCAAA+TGG 0.508329 3_1:-10617428 Msa0348390:CDS
TCTGTTCAGAAGTGGAAAGC+TGG 0.508734 3_1:-10617799 Msa0348390:CDS
TCATGGGATCCTATTCGTGC+TGG 0.510420 3_1:-10617367 Msa0348390:CDS
ATCAAAGATGCTGTGACTCC+AGG 0.511194 3_1:-10617958 Msa0348390:CDS
GGTGATGTTATAATTTATAC+CGG 0.512209 3_1:-10618099 Msa0348390:CDS
CCTAAGGAATACAAATGTAA+AGG 0.515388 3_1:-10616271 Msa0348390:CDS
TATCTTCCCCGCGGTCACCC+TGG 0.516259 3_1:+10618175 None:intergenic
ATTCTTGCTGACCTCTCCTC+GGG 0.517115 3_1:-10617754 Msa0348390:CDS
TCAATGGAGTTCTGGCGAAT+CGG 0.519477 3_1:-10617519 Msa0348390:CDS
GCACAGTATTAACAACTTCA+CGG 0.519655 3_1:+10618451 None:intergenic
GTATAAAATTCAAGATTCAT+GGG 0.521482 3_1:-10617908 Msa0348390:CDS
AGGTTGGGGTCTTCGGTCAT+GGG 0.522878 3_1:-10617383 Msa0348390:CDS
TATAAGTTGATAAGAGTGCC+TGG 0.523531 3_1:-10617850 Msa0348390:CDS
CAATGGATCATCTTCCAGCT+TGG 0.523798 3_1:+10615722 None:intergenic
TTTGCGTGCACTGCTACCCT+CGG 0.525087 3_1:+10616961 None:intergenic
TCAACACTCAGTTCCTCCCC+CGG 0.526455 3_1:-10618847 Msa0348390:CDS
TGACCGCGGGGAAGATACTT+TGG 0.527412 3_1:-10618169 Msa0348390:CDS
GGTTTAGTTGGTATAAGCCC+AGG 0.529198 3_1:-10618492 Msa0348390:CDS
AAACGTACCGATTTAAAAGC+TGG 0.530169 3_1:-10618354 Msa0348390:CDS
GTTGAAATTCCCACCCTGAC+CGG 0.530593 3_1:+10618080 None:intergenic
TCATATGTTAACTCATGCAT+TGG 0.532861 3_1:+10617001 None:intergenic
TAAACAAGCTGACAAAGTTA+CGG 0.533295 3_1:-10616164 Msa0348390:CDS
CGGCAGCATCACATTCAAGC+CGG 0.533696 3_1:-10618566 Msa0348390:CDS
TCAAAACAAAGGATAAAGGT+TGG 0.534159 3_1:-10617399 Msa0348390:CDS
TCAGATCAGAAGCTTCATAA+GGG 0.535931 3_1:-10618039 Msa0348390:CDS
ACTGCTACCCTCGGTGTGAT+CGG 0.536665 3_1:+10616970 None:intergenic
TGCATGCTCAATCGATGGGG+GGG 0.538668 3_1:-10618215 Msa0348390:CDS
GGAAAGGATCCCCAAACTAA+AGG 0.538957 3_1:-10615511 Msa0348390:CDS
TGAATTGTATAATGGAAGAA+GGG 0.540125 3_1:-10618875 None:intergenic
GGAGTCGGCATCGCTCTACT+TGG 0.540336 3_1:+10618666 None:intergenic
CATTTGATGCGCTAAGAAGA+AGG 0.540823 3_1:-10618422 Msa0348390:CDS
AAAACAAAGGATAAAGGTTG+GGG 0.541211 3_1:-10617397 Msa0348390:CDS
ATGTTAACTCATGCATTGGT+GGG 0.541447 3_1:+10617005 None:intergenic
GGCAATATTTGTATGACCAA+AGG 0.542268 3_1:-10618333 Msa0348390:CDS
AGGTTTAAAGCATGTTAGAA+GGG 0.545026 3_1:-10615955 Msa0348390:CDS
GGAAAGCTGGTTTCCCTGCA+AGG 0.545796 3_1:-10617786 Msa0348390:CDS
GACTCTCGGCTCCCGAGGAG+AGG 0.546001 3_1:+10617743 None:intergenic
ATCTCAACTTGTAGATGCCA+AGG 0.547043 3_1:-10618397 Msa0348390:CDS
TTCCAAACGGCAAAGGCACT+AGG 0.550397 3_1:+10617823 None:intergenic
ACTTGCGGTACATTAACCTA+AGG 0.551511 3_1:-10616287 Msa0348390:CDS
GATCCTCATCCTCTCCAAAA+GGG 0.552939 3_1:+10618625 None:intergenic
TTTGGAAATCTGTTCAGAAG+TGG 0.553589 3_1:-10617807 Msa0348390:CDS
ATGTCCCCAATCTCAACTCC+AGG 0.554821 3_1:+10618273 None:intergenic
TCTTAGCATTTATAATAAGA+GGG 0.554977 3_1:+10617152 None:intergenic
GGCAGCATCACATTCAAGCC+GGG 0.555680 3_1:-10618565 Msa0348390:CDS
GTCAGCTTGTTTATTTCACT+AGG 0.556250 3_1:+10616174 None:intergenic
GTATTTATGAATCTTTCAAG+TGG 0.556979 3_1:-10617243 Msa0348390:CDS
GGATCATTGGAGCATTTCAT+GGG 0.557375 3_1:-10616402 Msa0348390:CDS
GCAAAGGCACTAGGTTGTCC+AGG 0.558915 3_1:+10617832 None:intergenic
TTATACTTGTCAATGGAACC+CGG 0.562427 3_1:+10618828 None:intergenic
GGTCAGATTGAAGAAGCATA+AGG 0.562915 3_1:-10618544 Msa0348390:CDS
TCACATAGTTGCAGCTGTAG+TGG 0.565201 3_1:-10617616 Msa0348390:CDS
GCATTTATAATAAGAGGGTG+TGG 0.566087 3_1:+10617157 None:intergenic
CTAAATGCTTGAAGTGGAGT+CGG 0.566439 3_1:+10618651 None:intergenic
TTGAAGAGATGAAAATGCTA+AGG 0.566557 3_1:-10615992 Msa0348390:CDS
GAGAAGTTATCGATAAAGCT+AGG 0.566713 3_1:-10617321 Msa0348390:CDS
CAGACGAAGGACAAGACCAT+TGG 0.566905 3_1:-10615401 Msa0348390:CDS
GTTATAATTTATACCGGTCA+GGG 0.567735 3_1:-10618093 Msa0348390:CDS
TTGCATGCTCAATCGATGGG+GGG 0.569075 3_1:-10618216 Msa0348390:CDS
ATTTCGGATGTCTAAGAGAG+TGG 0.569188 3_1:+10617659 None:intergenic
AAGCCGTTGGTTCATGAATG+TGG 0.569854 3_1:-10617496 Msa0348390:CDS
TTTGCATGCTCAATCGATGG+GGG 0.571740 3_1:-10618217 Msa0348390:CDS
GAGGATCTCAATGACAATGA+TGG 0.572099 3_1:-10618609 Msa0348390:CDS
TATGCTTCTTCAATCTGACC+CGG 0.573333 3_1:+10618547 None:intergenic
AAGCATGTTAGAAGGGAACA+TGG 0.573467 3_1:-10615948 Msa0348390:CDS
TATGTTAACTCATGCATTGG+TGG 0.574648 3_1:+10617004 None:intergenic
TCGAACAAACACAGCGAAGA+GGG 0.575127 3_1:-10618307 Msa0348390:CDS
TTGCATATCCAGGGTGACCG+CGG 0.575259 3_1:-10618183 Msa0348390:CDS
AAACTAAAGGATGTACCTGC+TGG 0.575486 3_1:-10615498 Msa0348390:CDS
GTTTGCATGCTCAATCGATG+GGG 0.580565 3_1:-10618218 Msa0348390:CDS
GCCTAAGTTACTAGAAGAAG+CGG 0.581948 3_1:-10617212 Msa0348390:CDS
AACAGATTTCCAAACGGCAA+AGG 0.589578 3_1:+10617816 None:intergenic
GGGCTCCTAAATGCTTGAAG+TGG 0.589829 3_1:+10618645 None:intergenic
CAACCCCACCAAAACTTCAA+CGG 0.598147 3_1:-10615827 Msa0348390:CDS
AATGGAAGTGTTCAAAACAA+AGG 0.598701 3_1:-10617410 Msa0348390:CDS
AAGTGATACTGGAAGACTCT+CGG 0.599204 3_1:+10617729 None:intergenic
CTTCTGAACAGATTTCCAAA+CGG 0.599772 3_1:+10617810 None:intergenic
TATACTTGTCAATGGAACCC+GGG 0.600215 3_1:+10618829 None:intergenic
TGACCTGAAGATTGACCTTG+AGG 0.600787 3_1:+10618753 None:intergenic
GAATAAGTCCAGTCCTTGCA+GGG 0.601962 3_1:+10617773 None:intergenic
AAGAGGGTAGGATCAGTACC+TGG 0.602661 3_1:-10618291 Msa0348390:CDS
GGTCACAAATGAGTCTAATG+AGG 0.609516 3_1:-10617191 Msa0348390:CDS
GGGCCACATTCATGAACCAA+CGG 0.610204 3_1:+10617493 None:intergenic
CAGGTACATCCTTTAGTTTG+GGG 0.611590 3_1:+10615502 None:intergenic
TCTGGCGAATCGGAAGCCGT+TGG 0.612003 3_1:-10617509 Msa0348390:CDS
TGCTAAGAATGTTGGAAATG+TGG 0.613562 3_1:-10617137 Msa0348390:CDS
GATGTTCATGTTGATATGAG+TGG 0.616806 3_1:-10618513 Msa0348390:CDS
TGGAAGACTCTCGGCTCCCG+AGG 0.617476 3_1:+10617738 None:intergenic
AGCCCAGGTCAAAGAGACAA+TGG 0.619161 3_1:-10618477 Msa0348390:CDS
GAACATGGTTGATAATCCAA+TGG 0.619855 3_1:+10615385 None:intergenic
TAATTTATACCGGTCAGGGT+GGG 0.620279 3_1:-10618089 Msa0348390:CDS
TTAGGAAAACACTGACATGT+GGG 0.620821 3_1:+10617472 None:intergenic
AGCATGTTAGAAGGGAACAT+GGG 0.622484 3_1:-10615947 Msa0348390:CDS
TACGACGATGAAGCTGAGGA+TGG 0.627250 3_1:-10618120 Msa0348390:CDS
ACCGCTTCTTCTAGTAACTT+AGG 0.628944 3_1:+10617211 None:intergenic
GCGGTCACCCTGGATATGCA+AGG 0.632039 3_1:+10618185 None:intergenic
TTAAGTCAGCTTGTACAAGA+AGG 0.632082 3_1:-10617298 Msa0348390:CDS
ACAAACACAGCGAAGAGGGT+AGG 0.634440 3_1:-10618303 Msa0348390:CDS
CTACAGCTGCAACTATGTGA+AGG 0.634477 3_1:+10617619 None:intergenic
ATACTTGTCAATGGAACCCG+GGG 0.636158 3_1:+10618830 None:intergenic
ATTGATGCCTTGCATATCCA+GGG 0.637842 3_1:-10618192 Msa0348390:CDS
GTTAGGAAAACACTGACATG+TGG 0.639912 3_1:+10617471 None:intergenic
AGAATACGACGATGAAGCTG+AGG 0.645222 3_1:-10618124 Msa0348390:CDS
TTCGAACAAACACAGCGAAG+AGG 0.646517 3_1:-10618308 Msa0348390:CDS
TTTGCGGTTGAAGTATCATG+AGG 0.649080 3_1:+10618690 None:intergenic
ACGACGTCCCTTGAATGTCA+AGG 0.650055 3_1:+10616346 None:intergenic
GAGGGTAGCAGTGCACGCAA+AGG 0.654567 3_1:-10616959 Msa0348390:intron
TATGGTTCCGATCACACCGA+GGG 0.656242 3_1:-10616977 Msa0348390:CDS
AGTACCTGGAGTTGAGATTG+GGG 0.657916 3_1:-10618277 Msa0348390:CDS
TCATGCATTCGGAGAAACGA+AGG 0.659918 3_1:-10617559 Msa0348390:CDS
GAATGAACACAATAGGAACA+TGG 0.670945 3_1:+10615370 None:intergenic
ATAATTTATACCGGTCAGGG+TGG 0.675305 3_1:-10618090 Msa0348390:CDS
GATGCCAAGGAATTGAACAC+AGG 0.677660 3_1:-10618384 Msa0348390:CDS
ATGAGCAGTCCAAATCGCCA+GGG 0.685642 3_1:+10617578 None:intergenic
AAGAGCATTGATCCAGACGA+AGG 0.686419 3_1:-10615414 Msa0348390:CDS
TAGGAAAACACTGACATGTG+GGG 0.688446 3_1:+10617473 None:intergenic
GCATATCCAGGGTGACCGCG+GGG 0.702296 3_1:-10618181 Msa0348390:CDS
TATGTGGAGGTAGATCATAG+GGG 0.713936 3_1:-10616026 Msa0348390:intron
AATGAAATAAGAGTCATCCG+AGG 0.740934 3_1:-10617982 Msa0348390:CDS
CAGCCAAAGTATCTTCCCCG+CGG 0.752822 3_1:+10618166 None:intergenic
TTATGGTTCCGATCACACCG+AGG 0.773964 3_1:-10616978 Msa0348390:CDS
TACTTGTCAATGGAACCCGG+GGG 0.840303 3_1:+10618831 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATAATAAAGGTTTTTATA+GGG + chr3_1:10618122-10618141 None:intergenic 15.0%
!! TGTATAAAATTCAAGATTCA+TGG - chr3_1:10616254-10616273 Msa0348390:CDS 20.0%
!! GTATAAAATTCAAGATTCAT+GGG - chr3_1:10616255-10616274 Msa0348390:CDS 20.0%
!!! GATTTTCCTTATATTATCAA+TGG - chr3_1:10616628-10616647 Msa0348390:intron 20.0%
!! ACTTGAAAGATTCATAAATA+CGG + chr3_1:10616921-10616940 None:intergenic 20.0%
!! TCTTAGCATTTATAATAAGA+GGG + chr3_1:10617014-10617033 None:intergenic 20.0%
!! TTCTTAGCATTTATAATAAG+AGG + chr3_1:10617015-10617034 None:intergenic 20.0%
!! ATTATAAATGCTAAGAATGT+TGG - chr3_1:10617018-10617037 Msa0348390:CDS 20.0%
!!! ATCCTAAATAAGAAAGTTTT+TGG - chr3_1:10617412-10617431 Msa0348390:CDS 20.0%
!!! AACCAAAAACTTTCTTATTT+AGG + chr3_1:10617417-10617436 None:intergenic 20.0%
!! GCACTAATAATTTACAATTT+CGG - chr3_1:10617714-10617733 Msa0348390:CDS 20.0%
!! CACTAATAATTTACAATTTC+GGG - chr3_1:10617715-10617734 Msa0348390:CDS 20.0%
!! AATCATATCCCTAAAAATTT+GGG - chr3_1:10617842-10617861 Msa0348390:CDS 20.0%
!!! CACATAATAAAGGTTTTTAT+AGG + chr3_1:10618123-10618142 None:intergenic 20.0%
!! CTATAAAAACCTTTATTATG+TGG - chr3_1:10618121-10618140 Msa0348390:CDS 20.0%
!!! GAAATTTTGCATTTTCAAAA+TGG - chr3_1:10618527-10618546 Msa0348390:CDS 20.0%
!! TTGAAAATCTTAAATTGGAA+AGG - chr3_1:10618636-10618655 Msa0348390:CDS 20.0%
!!! TCTCATAATCATAGTATTTT+GGG + chr3_1:10618832-10618851 None:intergenic 20.0%
!!! ATCTCATAATCATAGTATTT+TGG + chr3_1:10618833-10618852 None:intergenic 20.0%
!! AATATTGCCAGCTTTTAAAT+CGG + chr3_1:10615819-10615838 None:intergenic 25.0%
! GGTGATGTTATAATTTATAC+CGG - chr3_1:10616064-10616083 Msa0348390:intron 25.0%
! TGCATTAAACTGAATGATTT+CGG + chr3_1:10616523-10616542 None:intergenic 25.0%
!! AGAACTCCATTGATAATATA+AGG + chr3_1:10616637-10616656 None:intergenic 25.0%
! TTATATTATCAATGGAGTTC+TGG - chr3_1:10616636-10616655 Msa0348390:intron 25.0%
! CTTGAAAGATTCATAAATAC+GGG + chr3_1:10616920-10616939 None:intergenic 25.0%
! GTATTTATGAATCTTTCAAG+TGG - chr3_1:10616920-10616939 Msa0348390:intron 25.0%
! CATGAGTTAACATATGATTA+TGG - chr3_1:10617168-10617187 Msa0348390:CDS 25.0%
! NNNTTGAAGAGTTGTTGAAT+GGG + chr3_1:10617589-10617608 None:intergenic 25.0%
! NNNNTTGAAGAGTTGTTGAA+TGG + chr3_1:10617590-10617609 None:intergenic 25.0%
! GCTATTTATGTGTTTGAAAA+AGG - chr3_1:10617737-10617756 Msa0348390:CDS 25.0%
! ATTTATGTGTTTGAAAAAGG+TGG - chr3_1:10617740-10617759 Msa0348390:CDS 25.0%
! GAATCATATCCCTAAAAATT+TGG - chr3_1:10617841-10617860 Msa0348390:CDS 25.0%
! ATCATATCCCTAAAAATTTG+GGG - chr3_1:10617843-10617862 Msa0348390:CDS 25.0%
!! AAAGATTCCCCAAATTTTTA+GGG + chr3_1:10617853-10617872 None:intergenic 25.0%
!! AAAAGATTCCCCAAATTTTT+AGG + chr3_1:10617854-10617873 None:intergenic 25.0%
! TGAACAAAAATATTCTGCTT+TGG - chr3_1:10618048-10618067 Msa0348390:CDS 25.0%
! GAACAAAAATATTCTGCTTT+GGG - chr3_1:10618049-10618068 Msa0348390:CDS 25.0%
! TAAAAACCTTTATTATGTGG+AGG - chr3_1:10618124-10618143 Msa0348390:CDS 25.0%
! CAGTGATATTAAATGATTCA+AGG + chr3_1:10618277-10618296 None:intergenic 25.0%
! TAATATCACTGCAATAGAAA+AGG - chr3_1:10618286-10618305 Msa0348390:CDS 25.0%
!!! TCAAATTTTGGAATCCAATT+AGG + chr3_1:10618392-10618411 None:intergenic 25.0%
!! ATTTTGCATTTTCAAAATGG+AGG - chr3_1:10618530-10618549 Msa0348390:CDS 25.0%
! TTCTCTATAAGGATAGAATT+TGG + chr3_1:10618599-10618618 None:intergenic 25.0%
! AATTCTATCCTTATAGAGAA+AGG - chr3_1:10618599-10618618 Msa0348390:CDS 25.0%
! CTCTCTTGAAAATCTTAAAT+TGG - chr3_1:10618631-10618650 Msa0348390:CDS 25.0%
CAGAATCTTATACTTGTCAA+TGG + chr3_1:10615345-10615364 None:intergenic 30.0%
CATTGACAAGTATAAGATTC+TGG - chr3_1:10615343-10615362 Msa0348390:CDS 30.0%
ACAGGTATCAAACTTCTTAT+AGG + chr3_1:10615377-10615396 None:intergenic 30.0%
!!! GTTTGATACCTGTTTTTTCA+AGG - chr3_1:10615384-10615403 Msa0348390:CDS 30.0%
!! TTTTCTCCATTTTTCCCATT+TGG - chr3_1:10615446-10615465 Msa0348390:CDS 30.0%
! TTTTAGCAACAAAAGAAGTG+CGG - chr3_1:10615577-10615596 Msa0348390:CDS 30.0%
TGTTATAATTTATACCGGTC+AGG - chr3_1:10616069-10616088 Msa0348390:intron 30.0%
GTTATAATTTATACCGGTCA+GGG - chr3_1:10616070-10616089 Msa0348390:intron 30.0%
GCAAAAATCTATGTCTATGA+TGG - chr3_1:10616229-10616248 Msa0348390:CDS 30.0%
AGAGTGGAAATATGTGAAAA+AGG + chr3_1:10616491-10616510 None:intergenic 30.0%
!!! TTGTTTTGAACACTTCCATT+TGG + chr3_1:10616753-10616772 None:intergenic 30.0%
!! AATGGAAGTGTTCAAAACAA+AGG - chr3_1:10616753-10616772 Msa0348390:intron 30.0%
GTGTTCAAAACAAAGGATAA+AGG - chr3_1:10616760-10616779 Msa0348390:intron 30.0%
TCAAAACAAAGGATAAAGGT+TGG - chr3_1:10616764-10616783 Msa0348390:intron 30.0%
CAAAACAAAGGATAAAGGTT+GGG - chr3_1:10616765-10616784 Msa0348390:intron 30.0%
AAAACAAAGGATAAAGGTTG+GGG - chr3_1:10616766-10616785 Msa0348390:intron 30.0%
TTGTTCTCTTCATATAAGAC+AGG + chr3_1:10617096-10617115 None:intergenic 30.0%
AAAAAATGCAACATGGAGAA+AGG + chr3_1:10617124-10617143 None:intergenic 30.0%
TCAATGCAAAAAATGCAACA+TGG + chr3_1:10617131-10617150 None:intergenic 30.0%
TCATATGTTAACTCATGCAT+TGG + chr3_1:10617165-10617184 None:intergenic 30.0%
AAATGCATTCATGGCTTAAA+AGG - chr3_1:10617297-10617316 Msa0348390:CDS 30.0%
! GTATGACATACATTTTCTCT+TGG + chr3_1:10617441-10617460 None:intergenic 30.0%
!! AAACAAAAGCATTAAGCTAG+AGG - chr3_1:10617474-10617493 Msa0348390:CDS 30.0%
TTATAATTCCTCCCATATTC+TGG - chr3_1:10617548-10617567 Msa0348390:CDS 30.0%
CCTTTACATTTGTATTCCTT+AGG + chr3_1:10617895-10617914 None:intergenic 30.0%
CCTAAGGAATACAAATGTAA+AGG - chr3_1:10617892-10617911 Msa0348390:CDS 30.0%
TGTAACTCACCAATAGATTT+AGG + chr3_1:10617923-10617942 None:intergenic 30.0%
GTTACATAACTTAGAGACAT+TGG - chr3_1:10617937-10617956 Msa0348390:CDS 30.0%
ACTTAGAGACATTGGATTTA+AGG - chr3_1:10617945-10617964 Msa0348390:CDS 30.0%
CTTAGAGACATTGGATTTAA+GGG - chr3_1:10617946-10617965 Msa0348390:CDS 30.0%
TAAACAAGCTGACAAAGTTA+CGG - chr3_1:10617999-10618018 Msa0348390:CDS 30.0%
TTGAAGAGATGAAAATGCTA+AGG - chr3_1:10618171-10618190 Msa0348390:CDS 30.0%
! TAGGTTTAAAGCATGTTAGA+AGG - chr3_1:10618207-10618226 Msa0348390:CDS 30.0%
! AGGTTTAAAGCATGTTAGAA+GGG - chr3_1:10618208-10618227 Msa0348390:CDS 30.0%
! TGAACAAGACACTCAAATTT+TGG + chr3_1:10618404-10618423 None:intergenic 30.0%
!! AAATTTTTCAGTGACTGCAA+TGG + chr3_1:10618461-10618480 None:intergenic 30.0%
AAATTGAGCTTCAGAAGATT+TGG + chr3_1:10618485-10618504 None:intergenic 30.0%
ATGCAAAATTTCACCATCAA+AGG + chr3_1:10618519-10618538 None:intergenic 30.0%
ATGCTCTTAACAAATTCATC+TGG + chr3_1:10618737-10618756 None:intergenic 30.0%
TTATACTTGTCAATGGAACC+CGG + chr3_1:10615338-10615357 None:intergenic 35.0%
TGAGGATTCCTTGAAAAAAC+AGG + chr3_1:10615395-10615414 None:intergenic 35.0%
!!! GTTTTTTCAAGGAATCCTCA+AGG - chr3_1:10615395-10615414 Msa0348390:CDS 35.0%
AAAAATGGAGAAAACCCAGA+AGG + chr3_1:10615440-10615459 None:intergenic 35.0%
GATGTTCATGTTGATATGAG+TGG - chr3_1:10615650-10615669 Msa0348390:CDS 35.0%
GTTGATATGAGTGGTTTAGT+TGG - chr3_1:10615659-10615678 Msa0348390:CDS 35.0%
GCACAGTATTAACAACTTCA+CGG + chr3_1:10615715-10615734 None:intergenic 35.0%
!! AAACGTACCGATTTAAAAGC+TGG - chr3_1:10615809-10615828 Msa0348390:CDS 35.0%
GGCAATATTTGTATGACCAA+AGG - chr3_1:10615830-10615849 Msa0348390:CDS 35.0%
TGTGTTTGTTCGAATTCCTT+TGG + chr3_1:10615849-10615868 None:intergenic 35.0%
! GGACATTTTCTTTTTCCGAA+TGG - chr3_1:10615907-10615926 Msa0348390:CDS 35.0%
CGATAACACACATTTCCATT+CGG + chr3_1:10615925-10615944 None:intergenic 35.0%
CGAATGGAAATGTGTGTTAT+CGG - chr3_1:10615923-10615942 Msa0348390:CDS 35.0%
TCAGATCAGAAGCTTCATAA+GGG - chr3_1:10616124-10616143 Msa0348390:CDS 35.0%
TCATAAGGGTAATCTTGCTT+TGG - chr3_1:10616138-10616157 Msa0348390:CDS 35.0%
AATGAAATAAGAGTCATCCG+AGG - chr3_1:10616181-10616200 Msa0348390:CDS 35.0%
! TAGACATAGATTTTTGCACC+TGG + chr3_1:10616226-10616245 None:intergenic 35.0%
! TCATGGGTTGAAAAAGCAAA+AGG - chr3_1:10616271-10616290 Msa0348390:CDS 35.0%
!! TATAAGTTGATAAGAGTGCC+TGG - chr3_1:10616313-10616332 Msa0348390:CDS 35.0%
CTTCTGAACAGATTTCCAAA+CGG + chr3_1:10616356-10616375 None:intergenic 35.0%
TTTGGAAATCTGTTCAGAAG+TGG - chr3_1:10616356-10616375 Msa0348390:CDS 35.0%
ACTTCATTGACAAGTGATAC+TGG + chr3_1:10616448-10616467 None:intergenic 35.0%
TGGAAATATGTGAAAAAGGC+AGG + chr3_1:10616487-10616506 None:intergenic 35.0%
TTAGGAAAACACTGACATGT+GGG + chr3_1:10616694-10616713 None:intergenic 35.0%
! GATACTCGATTTTTGCAGTT+AGG + chr3_1:10616712-10616731 None:intergenic 35.0%
AAAAATCGAGTATCCCAAAC+CGG - chr3_1:10616718-10616737 Msa0348390:intron 35.0%
GAGAAGTTATCGATAAAGCT+AGG - chr3_1:10616842-10616861 Msa0348390:intron 35.0%
TTAAGTCAGCTTGTACAAGA+AGG - chr3_1:10616865-10616884 Msa0348390:intron 35.0%
GCATTTATAATAAGAGGGTG+TGG + chr3_1:10617009-10617028 None:intergenic 35.0%
TGCTAAGAATGTTGGAAATG+TGG - chr3_1:10617026-10617045 Msa0348390:CDS 35.0%
! ATGTTAACTCATGCATTGGT+GGG + chr3_1:10617161-10617180 None:intergenic 35.0%
TATGTTAACTCATGCATTGG+TGG + chr3_1:10617162-10617181 None:intergenic 35.0%
GGTAGAAAGAAATGCTTATG+TGG - chr3_1:10617225-10617244 Msa0348390:CDS 35.0%
AATGTCAAGTAAAAGAACCG+CGG + chr3_1:10617263-10617282 None:intergenic 35.0%
TTAAGCCATGAATGCATTTG+CGG + chr3_1:10617296-10617315 None:intergenic 35.0%
ACTAATATAGAGCGAGAAAG+AGG + chr3_1:10617338-10617357 None:intergenic 35.0%
TGTATGTCATACTGTCTAGA+TGG - chr3_1:10617449-10617468 Msa0348390:CDS 35.0%
TGTGCAACTTTCCAGAATAT+GGG + chr3_1:10617562-10617581 None:intergenic 35.0%
TTGTGCAACTTTCCAGAATA+TGG + chr3_1:10617563-10617582 None:intergenic 35.0%
GTTTGAAAAAGGTGGATCAT+TGG - chr3_1:10617748-10617767 Msa0348390:CDS 35.0%
! TTCGCAGTCAAGAATTTTGA+AGG - chr3_1:10617793-10617812 Msa0348390:CDS 35.0%
AAGGCTCTTCCTAAATCTAT+TGG - chr3_1:10617911-10617930 Msa0348390:CDS 35.0%
! GTCAGCTTGTTTATTTCACT+AGG + chr3_1:10617992-10618011 None:intergenic 35.0%
GATCTACCTCCACATAATAA+AGG + chr3_1:10618133-10618152 None:intergenic 35.0%
ATTATGTGGAGGTAGATCAT+AGG - chr3_1:10618135-10618154 Msa0348390:CDS 35.0%
TTATGTGGAGGTAGATCATA+GGG - chr3_1:10618136-10618155 Msa0348390:CDS 35.0%
TGAAAATGCTAAGGCAGTTA+AGG - chr3_1:10618180-10618199 Msa0348390:CDS 35.0%
!! TCTCTAGTCTAGCTTTCAAA+TGG + chr3_1:10618364-10618383 None:intergenic 35.0%
GACTAGAGAAGTTTCCTAAT+TGG - chr3_1:10618375-10618394 Msa0348390:CDS 35.0%
!! TCTTCTGAAGCTCAATTTGT+TGG - chr3_1:10618487-10618506 Msa0348390:CDS 35.0%
!! GAACATGGTTGATAATCCAA+TGG + chr3_1:10618781-10618800 None:intergenic 35.0%
GAATGAACACAATAGGAACA+TGG + chr3_1:10618796-10618815 None:intergenic 35.0%
CATTGACGAATGAACACAAT+AGG + chr3_1:10618803-10618822 None:intergenic 35.0%
CTATTGTGTTCATTCGTCAA+TGG - chr3_1:10618801-10618820 Msa0348390:CDS 35.0%
TATACTTGTCAATGGAACCC+GGG + chr3_1:10615337-10615356 None:intergenic 40.0%
AATCCTCAAGGTCAATCTTC+AGG - chr3_1:10615407-10615426 Msa0348390:CDS 40.0%
!! TCTCCATTTTTCCCATTTGG+TGG - chr3_1:10615449-10615468 Msa0348390:CDS 40.0%
TATCATGAGGTCCACCAAAT+GGG + chr3_1:10615463-10615482 None:intergenic 40.0%
! TTTGCGGTTGAAGTATCATG+AGG + chr3_1:10615476-10615495 None:intergenic 40.0%
CTAAATGCTTGAAGTGGAGT+CGG + chr3_1:10615515-10615534 None:intergenic 40.0%
GAGGATCTCAATGACAATGA+TGG - chr3_1:10615554-10615573 Msa0348390:CDS 40.0%
TATGCTTCTTCAATCTGACC+CGG + chr3_1:10615619-10615638 None:intergenic 40.0%
! GGTCAGATTGAAGAAGCATA+AGG - chr3_1:10615619-10615638 Msa0348390:CDS 40.0%
TACCATTGTCTCTTTGACCT+GGG + chr3_1:10615691-10615710 None:intergenic 40.0%
TTACCATTGTCTCTTTGACC+TGG + chr3_1:10615692-10615711 None:intergenic 40.0%
CATTTGATGCGCTAAGAAGA+AGG - chr3_1:10615741-10615760 Msa0348390:CDS 40.0%
ATCTCAACTTGTAGATGCCA+AGG - chr3_1:10615766-10615785 Msa0348390:CDS 40.0%
ATTGATGCCTTGCATATCCA+GGG - chr3_1:10615971-10615990 Msa0348390:CDS 40.0%
ATAATTTATACCGGTCAGGG+TGG - chr3_1:10616073-10616092 Msa0348390:intron 40.0%
TAATTTATACCGGTCAGGGT+GGG - chr3_1:10616074-10616093 Msa0348390:intron 40.0%
GTCAGATCAGAAGCTTCATA+AGG - chr3_1:10616123-10616142 Msa0348390:CDS 40.0%
! TGGGTTGAAAAAGCAAAAGG+AGG - chr3_1:10616274-10616293 Msa0348390:CDS 40.0%
GTTGAAAAAGCAAAAGGAGG+CGG - chr3_1:10616277-10616296 Msa0348390:CDS 40.0%
AACAGATTTCCAAACGGCAA+AGG + chr3_1:10616350-10616369 None:intergenic 40.0%
AAGTGATACTGGAAGACTCT+CGG + chr3_1:10616437-10616456 None:intergenic 40.0%
ATTTCGGATGTCTAAGAGAG+TGG + chr3_1:10616507-10616526 None:intergenic 40.0%
ATTTGGACTGCTCATGCATT+CGG - chr3_1:10616593-10616612 Msa0348390:intron 40.0%
TAGGAAAACACTGACATGTG+GGG + chr3_1:10616693-10616712 None:intergenic 40.0%
GTTAGGAAAACACTGACATG+TGG + chr3_1:10616695-10616714 None:intergenic 40.0%
!! TTCCATTTGGTGCTTCAAAC+CGG + chr3_1:10616740-10616759 None:intergenic 40.0%
!! ATAAAAGCACCAGCACGAAT+AGG + chr3_1:10616808-10616827 None:intergenic 40.0%
!! GCTTTTATTTGCGAGTATGC+AGG - chr3_1:10616820-10616839 Msa0348390:intron 40.0%
GCCTAAGTTACTAGAAGAAG+CGG - chr3_1:10616951-10616970 Msa0348390:intron 40.0%
ACCGCTTCTTCTAGTAACTT+AGG + chr3_1:10616955-10616974 None:intergenic 40.0%
GGTCACAAATGAGTCTAATG+AGG - chr3_1:10616972-10616991 Msa0348390:CDS 40.0%
! GTTGCTCTCCAAATGTTTTC+TGG - chr3_1:10617067-10617086 Msa0348390:CDS 40.0%
AGTTTCCGCAAATGCATTCA+TGG - chr3_1:10617288-10617307 Msa0348390:CDS 40.0%
! TGGATCATTGGAGCATTTCA+TGG - chr3_1:10617760-10617779 Msa0348390:CDS 40.0%
! GGATCATTGGAGCATTTCAT+GGG - chr3_1:10617761-10617780 Msa0348390:CDS 40.0%
TTGAAGGTCCTTGACATTCA+AGG - chr3_1:10617809-10617828 Msa0348390:CDS 40.0%
TGAAGGTCCTTGACATTCAA+GGG - chr3_1:10617810-10617829 Msa0348390:CDS 40.0%
!! TGGGGAATCTTTTTCACTTG+CGG - chr3_1:10617861-10617880 Msa0348390:CDS 40.0%
ACTTGCGGTACATTAACCTA+AGG - chr3_1:10617876-10617895 Msa0348390:CDS 40.0%
TATGTGGAGGTAGATCATAG+GGG - chr3_1:10618137-10618156 Msa0348390:CDS 40.0%
CTAAGGCAGTTAAGGAAGTT+AGG - chr3_1:10618188-10618207 Msa0348390:CDS 40.0%
AAGCATGTTAGAAGGGAACA+TGG - chr3_1:10618215-10618234 Msa0348390:CDS 40.0%
AGCATGTTAGAAGGGAACAT+GGG - chr3_1:10618216-10618235 Msa0348390:CDS 40.0%
! AAATGGAGCCGTTGAAGTTT+TGG + chr3_1:10618347-10618366 None:intergenic 40.0%
! GTGTCTTGTTCAGATTTGTC+TGG - chr3_1:10618412-10618431 Msa0348390:CDS 40.0%
TTGTTGGAGAATGCCTTTGA+TGG - chr3_1:10618503-10618522 Msa0348390:CDS 40.0%
GCAAAGCTCCTTTCTCTATA+AGG + chr3_1:10618610-10618629 None:intergenic 40.0%
!! CAGGTACATCCTTTAGTTTG+GGG + chr3_1:10618664-10618683 None:intergenic 40.0%
! GCAGGTACATCCTTTAGTTT+GGG + chr3_1:10618665-10618684 None:intergenic 40.0%
AGCAGGTACATCCTTTAGTT+TGG + chr3_1:10618666-10618685 None:intergenic 40.0%
AAACTAAAGGATGTACCTGC+TGG - chr3_1:10618665-10618684 Msa0348390:CDS 40.0%
GTGTTCATTCGTCAATGGTT+AGG - chr3_1:10618806-10618825 Msa0348390:CDS 40.0%
ATACTTGTCAATGGAACCCG+GGG + chr3_1:10615336-10615355 None:intergenic 45.0%
TGACCTGAAGATTGACCTTG+AGG + chr3_1:10615413-10615432 None:intergenic 45.0%
TCTTCAGGTCAGTATCCTTC+TGG - chr3_1:10615422-10615441 Msa0348390:CDS 45.0%
CTTCAGGTCAGTATCCTTCT+GGG - chr3_1:10615423-10615442 Msa0348390:CDS 45.0%
GGTCCACCAAATGGGAAAAA+TGG + chr3_1:10615455-10615474 None:intergenic 45.0%
GTATCATGAGGTCCACCAAA+TGG + chr3_1:10615464-10615483 None:intergenic 45.0%
CGACTCCACTTCAAGCATTT+AGG - chr3_1:10615513-10615532 Msa0348390:CDS 45.0%
! CAAGCATTTAGGAGCCCTTT+TGG - chr3_1:10615524-10615543 Msa0348390:CDS 45.0%
!! ATTTAGGAGCCCTTTTGGAG+AGG - chr3_1:10615529-10615548 Msa0348390:CDS 45.0%
GATCCTCATCCTCTCCAAAA+GGG + chr3_1:10615541-10615560 None:intergenic 45.0%
AGATCCTCATCCTCTCCAAA+AGG + chr3_1:10615542-10615561 None:intergenic 45.0%
! GGTTTAGTTGGTATAAGCCC+AGG - chr3_1:10615671-10615690 Msa0348390:CDS 45.0%
GATGCCAAGGAATTGAACAC+AGG - chr3_1:10615779-10615798 Msa0348390:CDS 45.0%
CGAACCTGTGTTCAATTCCT+TGG + chr3_1:10615786-10615805 None:intergenic 45.0%
TTCGAACAAACACAGCGAAG+AGG - chr3_1:10615855-10615874 Msa0348390:CDS 45.0%
TCGAACAAACACAGCGAAGA+GGG - chr3_1:10615856-10615875 Msa0348390:CDS 45.0%
TCAGTACCTGGAGTTGAGAT+TGG - chr3_1:10615884-10615903 Msa0348390:CDS 45.0%
CAGTACCTGGAGTTGAGATT+GGG - chr3_1:10615885-10615904 Msa0348390:CDS 45.0%
AGTACCTGGAGTTGAGATTG+GGG - chr3_1:10615886-10615905 Msa0348390:CDS 45.0%
GGTTTGCATGCTCAATCGAT+GGG - chr3_1:10615944-10615963 Msa0348390:CDS 45.0%
GTTTGCATGCTCAATCGATG+GGG - chr3_1:10615945-10615964 Msa0348390:CDS 45.0%
TTTGCATGCTCAATCGATGG+GGG - chr3_1:10615946-10615965 Msa0348390:CDS 45.0%
GATTGATGCCTTGCATATCC+AGG - chr3_1:10615970-10615989 Msa0348390:CDS 45.0%
GCTGTTAGCATTGTTTCGTC+AGG - chr3_1:10616016-10616035 Msa0348390:CDS 45.0%
AGAATACGACGATGAAGCTG+AGG - chr3_1:10616039-10616058 Msa0348390:intron 45.0%
TCACAGCATCTTTGATGCCT+CGG + chr3_1:10616201-10616220 None:intergenic 45.0%
ATCAAAGATGCTGTGACTCC+AGG - chr3_1:10616205-10616224 Msa0348390:CDS 45.0%
TCTGTTCAGAAGTGGAAAGC+TGG - chr3_1:10616364-10616383 Msa0348390:CDS 45.0%
GAATAAGTCCAGTCCTTGCA+GGG + chr3_1:10616393-10616412 None:intergenic 45.0%
AGAATAAGTCCAGTCCTTGC+AGG + chr3_1:10616394-10616413 None:intergenic 45.0%
TATTCTTGCTGACCTCTCCT+CGG - chr3_1:10616408-10616427 Msa0348390:intron 45.0%
CTACAGCTGCAACTATGTGA+AGG + chr3_1:10616547-10616566 None:intergenic 45.0%
TCACATAGTTGCAGCTGTAG+TGG - chr3_1:10616547-10616566 Msa0348390:intron 45.0%
! GGTAAAAAAGCATGTGTCCC+TGG - chr3_1:10616568-10616587 Msa0348390:intron 45.0%
TCATGCATTCGGAGAAACGA+AGG - chr3_1:10616604-10616623 Msa0348390:intron 45.0%
! TCAATGGAGTTCTGGCGAAT+CGG - chr3_1:10616644-10616663 Msa0348390:intron 45.0%
!! AAGCCGTTGGTTCATGAATG+TGG - chr3_1:10616667-10616686 Msa0348390:intron 45.0%
! TTGGTGCTTCAAACCGGTTT+GGG + chr3_1:10616734-10616753 None:intergenic 45.0%
!! TTTGGTGCTTCAAACCGGTT+TGG + chr3_1:10616735-10616754 None:intergenic 45.0%
!! AACCGGTTTGAAGCACCAAA+TGG - chr3_1:10616735-10616754 Msa0348390:intron 45.0%
AGGATAAAGGTTGGGGTCTT+CGG - chr3_1:10616773-10616792 Msa0348390:intron 45.0%
ACAGGCTGCCAGAAAACATT+TGG + chr3_1:10617078-10617097 None:intergenic 45.0%
GCAACTTTCCAGAATATGGG+AGG + chr3_1:10617559-10617578 None:intergenic 45.0%
!! TTTTTCAATCAGCACGCCAG+TGG + chr3_1:10618080-10618099 None:intergenic 45.0%
!! ACTGGCGTGCTGATTGAAAA+AGG - chr3_1:10618079-10618098 Msa0348390:CDS 45.0%
CTCTTGTACTGCAGCACTTA+TGG + chr3_1:10618246-10618265 None:intergenic 45.0%
CAACCCCACCAAAACTTCAA+CGG - chr3_1:10618336-10618355 Msa0348390:CDS 45.0%
!! TTGTCTGGCTTTATCCAAGC+TGG - chr3_1:10618427-10618446 Msa0348390:CDS 45.0%
CAATGGATCATCTTCCAGCT+TGG + chr3_1:10618444-10618463 None:intergenic 45.0%
GGAAAGGATCCCCAAACTAA+AGG - chr3_1:10618652-10618671 Msa0348390:CDS 45.0%
!! AAGAGCATTGATCCAGACGA+AGG - chr3_1:10618749-10618768 Msa0348390:CDS 45.0%
TACTTGTCAATGGAACCCGG+GGG + chr3_1:10615335-10615354 None:intergenic 50.0%
!! CATCGCTCTACTTGGCTTTG+CGG + chr3_1:10615492-10615511 None:intergenic 50.0%
GGGCTCCTAAATGCTTGAAG+TGG + chr3_1:10615521-10615540 None:intergenic 50.0%
AGCCCAGGTCAAAGAGACAA+TGG - chr3_1:10615686-10615705 Msa0348390:CDS 50.0%
ACAAACACAGCGAAGAGGGT+AGG - chr3_1:10615860-10615879 Msa0348390:CDS 50.0%
AAGAGGGTAGGATCAGTACC+TGG - chr3_1:10615872-10615891 Msa0348390:CDS 50.0%
ATGTCCCCAATCTCAACTCC+AGG + chr3_1:10615893-10615912 None:intergenic 50.0%
CGGTTTGCATGCTCAATCGA+TGG - chr3_1:10615943-10615962 Msa0348390:CDS 50.0%
TTGCATGCTCAATCGATGGG+GGG - chr3_1:10615947-10615966 Msa0348390:CDS 50.0%
TACGACGATGAAGCTGAGGA+TGG - chr3_1:10616043-10616062 Msa0348390:intron 50.0%
GTTGAAATTCCCACCCTGAC+CGG + chr3_1:10616086-10616105 None:intergenic 50.0%
GAAAAAGCAAAAGGAGGCGG+TGG - chr3_1:10616280-10616299 Msa0348390:CDS 50.0%
AACCTAGTGCCTTTGCCGTT+TGG - chr3_1:10616338-10616357 Msa0348390:CDS 50.0%
!! TTCCAAACGGCAAAGGCACT+AGG + chr3_1:10616343-10616362 None:intergenic 50.0%
ATTCTTGCTGACCTCTCCTC+GGG - chr3_1:10616409-10616428 Msa0348390:intron 50.0%
ATGAGCAGTCCAAATCGCCA+GGG + chr3_1:10616588-10616607 None:intergenic 50.0%
GGGCCACATTCATGAACCAA+CGG + chr3_1:10616673-10616692 None:intergenic 50.0%
TCATGGGATCCTATTCGTGC+TGG - chr3_1:10616796-10616815 Msa0348390:intron 50.0%
TTATGGTTCCGATCACACCG+AGG - chr3_1:10617185-10617204 Msa0348390:CDS 50.0%
TATGGTTCCGATCACACCGA+GGG - chr3_1:10617186-10617205 Msa0348390:CDS 50.0%
TGTGGATCATCAAACTGCCG+CGG - chr3_1:10617243-10617262 Msa0348390:CDS 50.0%
ACGACGTCCCTTGAATGTCA+AGG + chr3_1:10617820-10617839 None:intergenic 50.0%
!! GAGCCGTTGAAGTTTTGGTG+GGG + chr3_1:10618342-10618361 None:intergenic 50.0%
!! GGAGCCGTTGAAGTTTTGGT+GGG + chr3_1:10618343-10618362 None:intergenic 50.0%
!! TGGAGCCGTTGAAGTTTTGG+TGG + chr3_1:10618344-10618363 None:intergenic 50.0%
ACCTGCTGGCATCAAACACT+TGG - chr3_1:10618679-10618698 Msa0348390:CDS 50.0%
TCCAAGTGTTTGATGCCAGC+AGG + chr3_1:10618683-10618702 None:intergenic 50.0%
!! CAATGGTCTTGTCCTTCGTC+TGG + chr3_1:10618764-10618783 None:intergenic 50.0%
CAGACGAAGGACAAGACCAT+TGG - chr3_1:10618762-10618781 Msa0348390:CDS 50.0%
TCAACACTCAGTTCCTCCCC+CGG - chr3_1:10615316-10615335 Msa0348390:CDS 55.0%
!! GAGCCCTTTTGGAGAGGATG+AGG - chr3_1:10615535-10615554 Msa0348390:CDS 55.0%
CGGCAGCATCACATTCAAGC+CGG - chr3_1:10615597-10615616 Msa0348390:CDS 55.0%
GGCAGCATCACATTCAAGCC+GGG - chr3_1:10615598-10615617 Msa0348390:CDS 55.0%
TGCATGCTCAATCGATGGGG+GGG - chr3_1:10615948-10615967 Msa0348390:CDS 55.0%
TTGCATATCCAGGGTGACCG+CGG - chr3_1:10615980-10615999 Msa0348390:CDS 55.0%
TGACCGCGGGGAAGATACTT+TGG - chr3_1:10615994-10616013 Msa0348390:CDS 55.0%
! CAGCCAAAGTATCTTCCCCG+CGG + chr3_1:10616000-10616019 None:intergenic 55.0%
!! GCAAAGGCACTAGGTTGTCC+AGG + chr3_1:10616334-10616353 None:intergenic 55.0%
! GGAAAGCTGGTTTCCCTGCA+AGG - chr3_1:10616377-10616396 Msa0348390:CDS 55.0%
AGCATGTGTCCCTGGCGATT+TGG - chr3_1:10616576-10616595 Msa0348390:intron 55.0%
CATGAGCAGTCCAAATCGCC+AGG + chr3_1:10616589-10616608 None:intergenic 55.0%
AAGGTTGGGGTCTTCGGTCA+TGG - chr3_1:10616779-10616798 Msa0348390:intron 55.0%
AGGTTGGGGTCTTCGGTCAT+GGG - chr3_1:10616780-10616799 Msa0348390:intron 55.0%
! ACTGCTACCCTCGGTGTGAT+CGG + chr3_1:10617196-10617215 None:intergenic 55.0%
TTTGCGTGCACTGCTACCCT+CGG + chr3_1:10617205-10617224 None:intergenic 55.0%
! TCTGCTTTGGGCTCTACCAC+TGG - chr3_1:10618061-10618080 Msa0348390:CDS 55.0%
CAACACTCAGTTCCTCCCCC+GGG - chr3_1:10615317-10615336 Msa0348390:CDS 60.0%
TTGTCAATGGAACCCGGGGG+AGG + chr3_1:10615332-10615351 None:intergenic 60.0%
GGAGTCGGCATCGCTCTACT+TGG + chr3_1:10615500-10615519 None:intergenic 60.0%
GCGGTCACCCTGGATATGCA+AGG + chr3_1:10615981-10616000 None:intergenic 60.0%
TGCATATCCAGGGTGACCGC+GGG - chr3_1:10615981-10616000 Msa0348390:CDS 60.0%
! GCTGGTTTCCCTGCAAGGAC+TGG - chr3_1:10616382-10616401 Msa0348390:CDS 60.0%
TCTGGCGAATCGGAAGCCGT+TGG - chr3_1:10616654-10616673 Msa0348390:intron 60.0%
GAGGGTAGCAGTGCACGCAA+AGG - chr3_1:10617204-10617223 Msa0348390:CDS 60.0%
GCATATCCAGGGTGACCGCG+GGG - chr3_1:10615982-10616001 Msa0348390:CDS 65.0%
TATCTTCCCCGCGGTCACCC+TGG + chr3_1:10615991-10616010 None:intergenic 65.0%
TGGAAGACTCTCGGCTCCCG+AGG + chr3_1:10616428-10616447 None:intergenic 65.0%
GACTCTCGGCTCCCGAGGAG+AGG + chr3_1:10616423-10616442 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 10615299 10618886 10615299 ID=Msa0348390;Name=Msa0348390
chr3_1 mRNA 10615299 10618886 10615299 ID=Msa0348390-mRNA-1;Parent=Msa0348390;Name=Msa0348390-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|3|0|1001
chr3_1 exon 10616960 10618886 10616960 ID=Msa0348390-mRNA-1:exon:2861;Parent=Msa0348390-mRNA-1
chr3_1 exon 10616085 10616426 10616085 ID=Msa0348390-mRNA-1:exon:2860;Parent=Msa0348390-mRNA-1
chr3_1 exon 10615299 10616035 10615299 ID=Msa0348390-mRNA-1:exon:2859;Parent=Msa0348390-mRNA-1
chr3_1 CDS 10616960 10618886 10616960 ID=Msa0348390-mRNA-1:cds;Parent=Msa0348390-mRNA-1
chr3_1 CDS 10616085 10616426 10616085 ID=Msa0348390-mRNA-1:cds;Parent=Msa0348390-mRNA-1
chr3_1 CDS 10615299 10616035 10615299 ID=Msa0348390-mRNA-1:cds;Parent=Msa0348390-mRNA-1
Gene Sequence

>Msa0348390

ATGGAAGAAGGGTTAGGTCAACACTCAGTTCCTCCCCCGGGTTCCATTGACAAGTATAAGATTCTGGATATTAAGCCTATAAGAAGTTTGATACCTGTTTTTTCAAGGAATCCTCAAGGTCAATCTTCAGGTCAGTATCCTTCTGGGTTTTCTCCATTTTTCCCATTTGGTGGACCTCATGATACTTCAACCGCAAAGCCAAGTAGAGCGATGCCGACTCCACTTCAAGCATTTAGGAGCCCTTTTGGAGAGGATGAGGATCTCAATGACAATGATGGTTTTAGCAACAAAAGAAGTGCGGCAGCATCACATTCAAGCCGGGTCAGATTGAAGAAGCATAAGGTATATAATGATGTTCATGTTGATATGAGTGGTTTAGTTGGTATAAGCCCAGGTCAAAGAGACAATGGTAACCGTGAAGTTGTTAATACTGTGCTCATGACATTTGATGCGCTAAGAAGAAGGCTATCTCAACTTGTAGATGCCAAGGAATTGAACACAGGTTCGATCAAACGTACCGATTTAAAAGCTGGCAATATTTGTATGACCAAAGGAATTCGAACAAACACAGCGAAGAGGGTAGGATCAGTACCTGGAGTTGAGATTGGGGACATTTTCTTTTTCCGAATGGAAATGTGTGTTATCGGTTTGCATGCTCAATCGATGGGGGGGATTGATGCCTTGCATATCCAGGGTGACCGCGGGGAAGATACTTTGGCTGTTAGCATTGTTTCGTCAGGAGAATACGACGATGAAGCTGAGGATGGTGATGTTATAATTTATACCGGTCAGGGTGGGAATTTCAACAAGAAAGATAAGCATGTGTCAGATCAGAAGCTTCATAAGGGTAATCTTGCTTTGGATAGAAGTTCACGAACACACAATGAAATAAGAGTCATCCGAGGCATCAAAGATGCTGTGACTCCAGGTGCAAAAATCTATGTCTATGATGGTCTGTATAAAATTCAAGATTCATGGGTTGAAAAAGCAAAAGGAGGCGGTGGCTTGTTTAAGTATAAGTTGATAAGAGTGCCTGGACAACCTAGTGCCTTTGCCGTTTGGAAATCTGTTCAGAAGTGGAAAGCTGGTTTCCCTGCAAGGACTGGACTTATTCTTGCTGACCTCTCCTCGGGAGCCGAGAGTCTTCCAGTATCACTTGTCAATGAAGTCGATAACGTTAAGTCACCTGCCTTTTTCACATATTTCCACTCTCTTAGACATCCGAAATCATTCAGTTTAATGCAGCCTTCACATAGTTGCAGCTGTAGTGGTAAAAAAGCATGTGTCCCTGGCGATTTGGACTGCTCATGCATTCGGAGAAACGAAGGTGATTTTCCTTATATTATCAATGGAGTTCTGGCGAATCGGAAGCCGTTGGTTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTATCCCAAACCGGTTTGAAGCACCAAATGGAAGTGTTCAAAACAAAGGATAAAGGTTGGGGTCTTCGGTCATGGGATCCTATTCGTGCTGGTGCTTTTATTTGCGAGTATGCAGGAGAAGTTATCGATAAAGCTAGGTTAAGTCAGCTTGTACAAGAAGGTGATACTGATGAGTATGTTTTCGATACAACCCGTATTTATGAATCTTTCAAGTGGAATTATGAGCCTAAGTTACTAGAAGAAGCGGTCACAAATGAGTCTAATGAGGATTATGCTTTGCCACACCCTCTTATTATAAATGCTAAGAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCTCCAAATGTTTTCTGGCAGCCTGTCTTATATGAAGAGAACAATCAATCCTTTCTCCATGTTGCATTTTTTGCATTGAGACATATCCCACCAATGCATGAGTTAACATATGATTATGGTTCCGATCACACCGAGGGTAGCAGTGCACGCAAAGGTGGATCATTGGAGCATTTCATGGGTAAAGTTTGTTCGCAGTCAAGAATTTTGAAGGTCCTTGACATTCAAGGGACGTCGTTGAATCATATCCCTAAAAATTTGGGGAATCTTTTTCACTTGCGGTACATTAACCTAAGGAATACAAATGTAAAGGCTCTTCCTAAATCTATTGGTGAGTTACATAACTTAGAGACATTGGATTTAAGGGAAACACTAGTGCATGAGATACCTAGTGAAATAAACAAGCTGACAAAGTTACGGCATCTGCTTGCTTTTCATCGCAACTATGAACAAAAATATTCTGCTTTGGGCTCTACCACTGGCGTGCTGATTGAAAAAGATCATAGGGGAGTAGATCTCATTGAAGAGATGAAAATGCTAAGGCAGTTAAGGAAGTTAGGTTTAAAGCATGTTAGAAGGGAACATGGGAATGCCATAAGTGCTGCAGTACAAGAGATGCAACACCTTGAATCATTTAATATCACTGCAATAGAAAAGGATAAAATTATTGACTTAAACTTTGCGTCAACCCCACCAAAACTTCAACGGCTCCATTTGAAAGCTAGACTAGAGAAGTTTCCTAATTGGATTCCAAAATTTGAGTGTCTTGTTCAGATTTGTCTGGCTTTATCCAAGCTGGAAGATGATCCATTGCAGTCACTGAAAAATTTGCCAAATCTTCTGAAGCTCAATTTGTTGGAGAATGCCTTTGATGGTGAAATTTTGCATTTTCAAAATGGAGGATTTCAAATATTGAAAGAACTGATTCTCAGTCACTTGAATAGACCAAATTCTATCCTTATAGAGAAAGGAGCTTTGCTCTCTCTTGAAAATCTTAAATTGGAAAGGATCCCCAAACTAAAGGATGTACCTGCTGGCATCAAACACTTGGATAAGCTCAAAGTCATTGATTTAGTTGATATGCCAGATGAATTTGTTAAGAGCATTGATCCAGACGAAGGACAAGACCATTGGATTATCAACCATGTTCCTATTGTGTTCATTCGTCAATGGTTAGGCCCAAAATACTATGATTATGAGATTCGCACTATTAACTCATCCACCAAGAAGTCCTGA
Protein sequence

>Msa0348390

MEEGLGQHSVPPPGSIDKYKILDIKPIRSLIPVFSRNPQGQSSGQYPSGFSPFFPFGGPHDTSTAKPSRAMPTPLQAFRSPFGEDEDLNDNDGFSNKRSAAASHSSRVRLKKHKVYNDVHVDMSGLVGISPGQRDNGNREVVNTVLMTFDALRRRLSQLVDAKELNTGSIKRTDLKAGNICMTKGIRTNTAKRVGSVPGVEIGDIFFFRMEMCVIGLHAQSMGGIDALHIQGDRGEDTLAVSIVSSGEYDDEAEDGDVIIYTGQGGNFNKKDKHVSDQKLHKGNLALDRSSRTHNEIRVIRGIKDAVTPGAKIYVYDGLYKIQDSWVEKAKGGGGLFKYKLIRVPGQPSAFAVWKSVQKWKAGFPARTGLILADLSSGAESLPVSLVNEVDNVKSPAFFTYFHSLRHPKSFSLMQPSHSCSCSGKKACVPGDLDCSCIRRNEGDFPYIINGVLANRKPLVHECGPTCQCFPNCKNRVSQTGLKHQMEVFKTKDKGWGLRSWDPIRAGAFICEYAGEVIDKARLSQLVQEGDTDEYVFDTTRIYESFKWNYEPKLLEEAVTNESNEDYALPHPLIINAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMHELTYDYGSDHTEGSSARKGGSLEHFMGKVCSQSRILKVLDIQGTSLNHIPKNLGNLFHLRYINLRNTNVKALPKSIGELHNLETLDLRETLVHEIPSEINKLTKLRHLLAFHRNYEQKYSALGSTTGVLIEKDHRGVDLIEEMKMLRQLRKLGLKHVRREHGNAISAAVQEMQHLESFNITAIEKDKIIDLNFASTPPKLQRLHLKARLEKFPNWIPKFECLVQICLALSKLEDDPLQSLKNLPNLLKLNLLENAFDGEILHFQNGGFQILKELILSHLNRPNSILIEKGALLSLENLKLERIPKLKDVPAGIKHLDKLKVIDLVDMPDEFVKSIDPDEGQDHWIINHVPIVFIRQWLGPKYYDYEIRTINSSTKKS*