Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348510 | QDW65496.1 | 99.315 | 292 | 1 | 1 | 1 | 291 | 1 | 292 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348510 | sp|Q2YDP3|NC2A_BOVIN | 49.558 | 113 | 55 | 2 | 2 | 114 | 5 | 115 | 2.53e-30 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348510 | A0A5B8GTQ9 | 99.315 | 292 | 1 | 1 | 1 | 291 | 1 | 292 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0348510 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348510 | MtrunA17_Chr3g0081161 | 97.945 | 292 | 5 | 1 | 1 | 291 | 1 | 292 | 0.0 | 587 |
| Msa0348510 | MtrunA17_Chr8g0354151 | 68.581 | 296 | 74 | 7 | 1 | 279 | 1 | 294 | 3.71e-123 | 354 |
| Msa0348510 | MtrunA17_Chr5g0441241 | 51.071 | 280 | 111 | 8 | 18 | 278 | 1 | 273 | 1.80e-54 | 178 |
| Msa0348510 | MtrunA17_Chr5g0420401 | 83.146 | 89 | 14 | 1 | 171 | 258 | 51 | 139 | 1.10e-44 | 148 |
| Msa0348510 | MtrunA17_Chr2g0288481 | 40.449 | 89 | 50 | 1 | 1 | 86 | 75 | 163 | 2.08e-12 | 65.5 |
| Msa0348510 | MtrunA17_Chr3g0132191 | 40.506 | 79 | 47 | 0 | 8 | 86 | 55 | 133 | 5.49e-12 | 63.9 |
| Msa0348510 | MtrunA17_Chr1g0191681 | 39.744 | 78 | 47 | 0 | 9 | 86 | 102 | 179 | 5.72e-12 | 64.7 |
| Msa0348510 | MtrunA17_Chr7g0272991 | 39.744 | 78 | 47 | 0 | 9 | 86 | 102 | 179 | 8.02e-12 | 64.3 |
| Msa0348510 | MtrunA17_Chr2g0310741 | 41.026 | 78 | 46 | 0 | 9 | 86 | 104 | 181 | 5.82e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348510 | AT3G12480.1 | 50.853 | 293 | 119 | 9 | 1 | 279 | 1 | 282 | 1.76e-78 | 240 |
| Msa0348510 | AT5G19490.1 | 44.595 | 296 | 120 | 12 | 1 | 289 | 1 | 259 | 5.11e-52 | 171 |
| Msa0348510 | AT1G54830.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.91e-12 | 65.1 |
| Msa0348510 | AT1G54830.3 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.91e-12 | 65.1 |
| Msa0348510 | AT1G54830.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.91e-12 | 65.1 |
| Msa0348510 | AT1G08970.3 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.09e-12 | 64.3 |
| Msa0348510 | AT1G08970.4 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.09e-12 | 64.3 |
| Msa0348510 | AT1G08970.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.09e-12 | 64.3 |
| Msa0348510 | AT1G08970.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.09e-12 | 64.3 |
| Msa0348510 | AT5G63470.2 | 40.506 | 79 | 47 | 0 | 8 | 86 | 78 | 156 | 7.69e-12 | 64.3 |
| Msa0348510 | AT5G63470.1 | 40.506 | 79 | 47 | 0 | 8 | 86 | 78 | 156 | 7.69e-12 | 64.3 |
| Msa0348510 | AT3G48590.1 | 40.506 | 79 | 47 | 0 | 8 | 86 | 65 | 143 | 8.85e-12 | 63.9 |
| Msa0348510 | AT1G56170.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 77 | 154 | 1.87e-11 | 62.4 |
| Msa0348510 | AT1G56170.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 77 | 154 | 1.87e-11 | 62.4 |
Find 111 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGTACATGATTTACTTCT+TGG | 0.159971 | 3_1:-11047224 | Msa0348510:three_prime_UTR |
| TCTTCTTCATGGCATCAAAT+TGG | 0.205765 | 3_1:+11051628 | None:intergenic |
| CCATTATCTATTGCCATACT+TGG | 0.281670 | 3_1:+11047727 | None:intergenic |
| TTTCATGTAAGTTGGCATTC+AGG | 0.299510 | 3_1:+11047629 | None:intergenic |
| AGGGGAAGAGGAAGGGGTAG+AGG | 0.303468 | 3_1:-11047859 | Msa0348510:CDS |
| TTGCAGCAGGTTCAGGCAAT+GGG | 0.318190 | 3_1:+11047563 | None:intergenic |
| TTACAAATGCAATGCATTCA+TGG | 0.332233 | 3_1:+11048885 | None:intergenic |
| GGTATCAAGCTTCTTCTTCA+TGG | 0.333154 | 3_1:+11051617 | None:intergenic |
| TTGCAGCAAACCTTGGTAAT+AGG | 0.333492 | 3_1:-11047465 | Msa0348510:CDS |
| CTTCTTCATGGCATCAAATT+GGG | 0.333930 | 3_1:+11051629 | None:intergenic |
| GATTTACTTCTTGGTAAAGT+TGG | 0.341511 | 3_1:-11047215 | Msa0348510:three_prime_UTR |
| GAGTCATGATTTCCACCTTA+AGG | 0.342418 | 3_1:+11047394 | None:intergenic |
| CCTACGAAGTGTCGATTTGC+CGG | 0.344437 | 3_1:+11051753 | None:intergenic |
| GGACATGGCCATTCTGAGGC+TGG | 0.349144 | 3_1:-11048288 | Msa0348510:CDS |
| TGGACTTCGAACCTTCTCTT+TGG | 0.350657 | 3_1:+11048246 | None:intergenic |
| ATCTATTGCCATACTTGGAT+TGG | 0.365176 | 3_1:+11047732 | None:intergenic |
| TCTATTGCCATACTTGGATT+GGG | 0.367608 | 3_1:+11047733 | None:intergenic |
| AGAGGCTAAGCGGAGTAAAA+TGG | 0.373594 | 3_1:-11048108 | Msa0348510:intron |
| TAAATGGATATTGTTGTTGT+AGG | 0.378021 | 3_1:-11047261 | Msa0348510:three_prime_UTR |
| TGGCATTCAGGTCAATGTTT+CGG | 0.380240 | 3_1:+11047641 | None:intergenic |
| ACTCGTACGAACGCATATTC+CGG | 0.387293 | 3_1:-11051772 | Msa0348510:five_prime_UTR |
| CCAAGTATGGCAATAGATAA+TGG | 0.389197 | 3_1:-11047727 | Msa0348510:CDS |
| GACATGGCCATTCTGAGGCT+GGG | 0.396129 | 3_1:-11048287 | Msa0348510:CDS |
| ATTTACTTCTTGGTAAAGTT+GGG | 0.399093 | 3_1:-11047214 | Msa0348510:three_prime_UTR |
| ATCAAATTGGGAAATTGAAC+AGG | 0.410904 | 3_1:+11051641 | None:intergenic |
| GTAGAGTTATTTCATAAGTT+CGG | 0.415756 | 3_1:+11048923 | None:intergenic |
| AGACGTCCCCAATCCAAGTA+TGG | 0.420572 | 3_1:-11047740 | Msa0348510:CDS |
| AGCAACTCACAAACTAAAAC+AGG | 0.421254 | 3_1:+11049066 | None:intergenic |
| AGAGGAAGAGGCCGCGGTCG+AGG | 0.425950 | 3_1:-11047841 | Msa0348510:CDS |
| AGATTCAACCTGCTGATGTA+AGG | 0.427032 | 3_1:+11047795 | None:intergenic |
| TTTAAGATATTGTCTGTCAA+TGG | 0.428927 | 3_1:-11047164 | Msa0348510:three_prime_UTR |
| AGAGGAAGGGGTAGAGGAAG+AGG | 0.428938 | 3_1:-11047853 | Msa0348510:CDS |
| GTTTGATTACAGCTTGAGTT+GGG | 0.437970 | 3_1:-11047901 | Msa0348510:intron |
| CCACACTGGCGGTACTGGTA+GGG | 0.444180 | 3_1:-11047878 | Msa0348510:CDS |
| GAAGAGTAGCTAACACCTTA+AGG | 0.446150 | 3_1:-11047409 | Msa0348510:exon |
| TTGGGCCACACTGGCGGTAC+TGG | 0.449291 | 3_1:-11047883 | Msa0348510:CDS |
| GGCGGTACTGGTAGGGGAAG+AGG | 0.449384 | 3_1:-11047871 | Msa0348510:CDS |
| AAAACTTACAGCAGGGAAAC+GGG | 0.451379 | 3_1:+11051596 | None:intergenic |
| ATGCAACATGAAGAAATTCC+AGG | 0.456390 | 3_1:-11047535 | Msa0348510:CDS |
| TGTTTGATTACAGCTTGAGT+TGG | 0.458715 | 3_1:-11047902 | Msa0348510:intron |
| AAAACAACAATGAAACCAAC+TGG | 0.460380 | 3_1:+11047188 | None:intergenic |
| ACTGGTAGGGGAAGAGGAAG+GGG | 0.463619 | 3_1:-11047865 | Msa0348510:CDS |
| TTTCTGTCCCACACTACCTT+CGG | 0.475603 | 3_1:-11051730 | Msa0348510:five_prime_UTR |
| ACATGGCCATTCTGAGGCTG+GGG | 0.478857 | 3_1:-11048286 | Msa0348510:CDS |
| AGGGGTAGAGGAAGAGGCCG+CGG | 0.479703 | 3_1:-11047847 | Msa0348510:CDS |
| TGTTGCATATCTGTTGCAGC+AGG | 0.480033 | 3_1:+11047550 | None:intergenic |
| ATATCTGTTGCAGCAGGTTC+AGG | 0.494528 | 3_1:+11047556 | None:intergenic |
| AAGAGAAACCTTACATCAGC+AGG | 0.497349 | 3_1:-11047803 | Msa0348510:CDS |
| CACAAGGTCATTGGTATACC+AGG | 0.499756 | 3_1:+11047338 | None:intergenic |
| GCCACACTGGCGGTACTGGT+AGG | 0.501008 | 3_1:-11047879 | Msa0348510:CDS |
| AAAGCAAAGGAAGGGGTGAA+TGG | 0.502976 | 3_1:+11051694 | None:intergenic |
| CACACTGGCGGTACTGGTAG+GGG | 0.503334 | 3_1:-11047877 | Msa0348510:CDS |
| TAATAGGCTAGATGAGGATG+AGG | 0.506471 | 3_1:-11047449 | Msa0348510:CDS |
| GAGGAAGAGGCCGCGGTCGA+GGG | 0.509630 | 3_1:-11047840 | Msa0348510:CDS |
| GGTAAAGTTGGGTTACCAGT+TGG | 0.509924 | 3_1:-11047203 | Msa0348510:three_prime_UTR |
| CCATGTCCATGGCTATAGTC+AGG | 0.515058 | 3_1:+11048303 | None:intergenic |
| CTGCAGCTTGCAGCAAACCT+TGG | 0.517052 | 3_1:-11047472 | Msa0348510:CDS |
| TGAGGAAGATTATGATGAGG+AGG | 0.517959 | 3_1:-11047431 | Msa0348510:CDS |
| GGAAATTTGAAAGCAAAGGA+AGG | 0.521410 | 3_1:+11051685 | None:intergenic |
| GTTGCAGCAGGTTCAGGCAA+TGG | 0.527555 | 3_1:+11047562 | None:intergenic |
| ATGCAAGCAGATGAGGATGT+TGG | 0.535775 | 3_1:-11049108 | Msa0348510:CDS |
| TGGGAAATTGAACAGGAAGA+AGG | 0.535990 | 3_1:+11051648 | None:intergenic |
| CCATCTTGTCGACATCAGAA+AGG | 0.538115 | 3_1:+11047506 | None:intergenic |
| TAGTATCTACACAAGGTCAT+TGG | 0.541634 | 3_1:+11047329 | None:intergenic |
| GAAGGGAAATTTGAAAGCAA+AGG | 0.546958 | 3_1:+11051681 | None:intergenic |
| CATCAGCCCCAGCCTCAGAA+TGG | 0.550548 | 3_1:+11048280 | None:intergenic |
| TACTGGTAGGGGAAGAGGAA+GGG | 0.550796 | 3_1:-11047866 | Msa0348510:CDS |
| CCGGCAAATCGACACTTCGT+AGG | 0.550850 | 3_1:-11051753 | Msa0348510:five_prime_UTR |
| CCTTTCTGATGTCGACAAGA+TGG | 0.553095 | 3_1:-11047506 | Msa0348510:CDS |
| CTATTGCCATACTTGGATTG+GGG | 0.558026 | 3_1:+11047734 | None:intergenic |
| TCAGGCAATGGGGCCTGAGT+AGG | 0.561825 | 3_1:+11047574 | None:intergenic |
| CAGCTTGAGTTGGGCCACAC+TGG | 0.562286 | 3_1:-11047892 | Msa0348510:CDS |
| CATCTTGTCGACATCAGAAA+GGG | 0.564046 | 3_1:+11047507 | None:intergenic |
| GAAGATAATGCAAGCAGATG+AGG | 0.565858 | 3_1:-11049115 | Msa0348510:CDS |
| AGGAAGAGGCCGCGGTCGAG+GGG | 0.567783 | 3_1:-11047839 | Msa0348510:CDS |
| CCTCAGAATGGCCATGTCCA+TGG | 0.574358 | 3_1:+11048292 | None:intergenic |
| GAAATTTGAAAGCAAAGGAA+GGG | 0.575104 | 3_1:+11051686 | None:intergenic |
| GGATGAGGAAGATTATGATG+AGG | 0.581721 | 3_1:-11047434 | Msa0348510:CDS |
| CCTCATCTAGCCTATTACCA+AGG | 0.583547 | 3_1:+11047455 | None:intergenic |
| ATGTTTACCAGGAAAGCTGC+TGG | 0.583874 | 3_1:-11048155 | Msa0348510:intron |
| TGTAAGATCCGAAGGTAGTG+TGG | 0.584836 | 3_1:+11051722 | None:intergenic |
| TTGTAATGACAGCGATGAAG+AGG | 0.584902 | 3_1:-11048126 | Msa0348510:CDS |
| TTTGAGAGACATTGTCAGCA+GGG | 0.585914 | 3_1:-11048328 | Msa0348510:CDS |
| AGATAATGGTTCAGAACCAA+GGG | 0.587090 | 3_1:-11047713 | Msa0348510:CDS |
| TAGATAATGGTTCAGAACCA+AGG | 0.587959 | 3_1:-11047714 | Msa0348510:CDS |
| TTCGAACCTTCTCTTTGGAA+CGG | 0.592528 | 3_1:+11048251 | None:intergenic |
| AGAACCAAGGGAGTTATCAA+AGG | 0.594821 | 3_1:-11047701 | Msa0348510:CDS |
| ACATCAGAAAGGGACCAACC+TGG | 0.595072 | 3_1:+11047517 | None:intergenic |
| ATCGCGCCGTTCCAAAGAGA+AGG | 0.600860 | 3_1:-11048257 | Msa0348510:intron |
| ATTGTTAAATTGTGATGATG+AGG | 0.602483 | 3_1:+11051862 | None:intergenic |
| GTACTGGTAGGGGAAGAGGA+AGG | 0.602926 | 3_1:-11047867 | Msa0348510:CDS |
| CCTGACTATAGCCATGGACA+TGG | 0.613541 | 3_1:-11048303 | Msa0348510:CDS |
| CCATGGACATGGCCATTCTG+AGG | 0.616486 | 3_1:-11048292 | Msa0348510:CDS |
| TGCAGCAGGTTCAGGCAATG+GGG | 0.618772 | 3_1:+11047564 | None:intergenic |
| AAATTTGAAAGCAAAGGAAG+GGG | 0.622601 | 3_1:+11051687 | None:intergenic |
| CCTTGGTAATAGGCTAGATG+AGG | 0.626019 | 3_1:-11047455 | Msa0348510:CDS |
| CTTGAGTTGGGCCACACTGG+CGG | 0.626402 | 3_1:-11047889 | Msa0348510:CDS |
| GTTTGCTGAATAGAAGTGCA+AGG | 0.627861 | 3_1:+11047769 | None:intergenic |
| GAAAATATTGCAGCTCACGA+AGG | 0.630972 | 3_1:-11047679 | Msa0348510:CDS |
| AGGGTTCCTGACTATAGCCA+TGG | 0.631288 | 3_1:-11048309 | Msa0348510:CDS |
| GTAAGATCCGAAGGTAGTGT+GGG | 0.633991 | 3_1:+11051723 | None:intergenic |
| GAGTAGCTAACACCTTAAGG+TGG | 0.636532 | 3_1:-11047406 | Msa0348510:exon |
| AAGCACGGATATACCTACTC+AGG | 0.637338 | 3_1:-11047587 | Msa0348510:CDS |
| GGATGTTGGAAAGATAGCAC+TGG | 0.638767 | 3_1:-11049094 | Msa0348510:CDS |
| TGGTGTGATGTAAGATCCGA+AGG | 0.643129 | 3_1:+11051714 | None:intergenic |
| AACATGAAGAAATTCCAGGT+TGG | 0.648140 | 3_1:-11047531 | Msa0348510:CDS |
| CAGTTCGAGCCCCTCGACCG+CGG | 0.651823 | 3_1:+11047830 | None:intergenic |
| CCCTACCAGTACCGCCAGTG+TGG | 0.652289 | 3_1:+11047878 | None:intergenic |
| CATTTGCTAGTATCTACACA+AGG | 0.680194 | 3_1:+11047322 | None:intergenic |
| ACAGCGATGAAGAGGCTAAG+CGG | 0.705575 | 3_1:-11048118 | Msa0348510:CDS |
| TATGAAATAACTCTACAGAG+AGG | 0.722734 | 3_1:-11048916 | Msa0348510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTATAATTTGAAATATAT+AGG | - | chr3_1:11048398-11048417 | Msa0348510:intron | 10.0% |
| !!! | TTATTTCTTAGTTAAATTTT+GGG | - | chr3_1:11049970-11049989 | Msa0348510:intron | 10.0% |
| !!! | AATTATAAAATAAGTGATTT+TGG | - | chr3_1:11050420-11050439 | Msa0348510:intron | 10.0% |
| !! | CTTAAATAGATTATTTGTAA+AGG | + | chr3_1:11049810-11049829 | None:intergenic | 15.0% |
| !!! | GTTATTTCTTAGTTAAATTT+TGG | - | chr3_1:11049969-11049988 | Msa0348510:intron | 15.0% |
| !!! | TATTTTCTATATTTTTCTTG+AGG | - | chr3_1:11050160-11050179 | Msa0348510:intron | 15.0% |
| !! | ATTTGAACTTATCATTAAAA+GGG | + | chr3_1:11050932-11050951 | None:intergenic | 15.0% |
| !! | TATTTGAACTTATCATTAAA+AGG | + | chr3_1:11050933-11050952 | None:intergenic | 15.0% |
| !! | TGATGATAAAGTGATTATTT+AGG | - | chr3_1:11047547-11047566 | Msa0348510:CDS | 20.0% |
| !! | GATGATAAAGTGATTATTTA+GGG | - | chr3_1:11047548-11047567 | Msa0348510:CDS | 20.0% |
| !! | TCGCAAATTATTATCATTAT+CGG | + | chr3_1:11047713-11047732 | None:intergenic | 20.0% |
| !!! | TTGAGCTTTGTTTATTTATT+TGG | - | chr3_1:11047794-11047813 | Msa0348510:CDS | 20.0% |
| !!! | TGAGCTTTGTTTATTTATTT+GGG | - | chr3_1:11047795-11047814 | Msa0348510:CDS | 20.0% |
| !! | GTATCTTCTCAAATTATTAT+CGG | + | chr3_1:11048193-11048212 | None:intergenic | 20.0% |
| !! | ATTGTCCTATTAGAAAAATT+AGG | - | chr3_1:11048513-11048532 | Msa0348510:intron | 20.0% |
| !! | TTAGATTTCACAAAACTAAA+GGG | + | chr3_1:11048856-11048875 | None:intergenic | 20.0% |
| !! | TTTAGATTTCACAAAACTAA+AGG | + | chr3_1:11048857-11048876 | None:intergenic | 20.0% |
| !! | TGTGATAAAAAATAATGTTC+TGG | + | chr3_1:11049023-11049042 | None:intergenic | 20.0% |
| !!! | GAACATTATTTTTTATCACA+AGG | - | chr3_1:11049023-11049042 | Msa0348510:intron | 20.0% |
| !!! | ATTTTTTATCACAAGGTTAT+AGG | - | chr3_1:11049030-11049049 | Msa0348510:intron | 20.0% |
| !! | TAATCATAAATGTATCCAAT+AGG | + | chr3_1:11049384-11049403 | None:intergenic | 20.0% |
| !! | GATTTAATGATTAAGAATTG+AGG | - | chr3_1:11050245-11050264 | Msa0348510:intron | 20.0% |
| !!! | TTTTATAATTCGTAACAAAC+AGG | + | chr3_1:11050410-11050429 | None:intergenic | 20.0% |
| !! | AATAAAAAGATAAAAGCTAC+TGG | + | chr3_1:11050785-11050804 | None:intergenic | 20.0% |
| !! | AAGAAGGTAACAATTTTGAA+GGG | + | chr3_1:11047347-11047366 | None:intergenic | 25.0% |
| !!! | GGAATTTTAGTATGATTCAT+AGG | - | chr3_1:11047623-11047642 | Msa0348510:CDS | 25.0% |
| !! | TTTGGGTTTGATGATAATTT+AGG | - | chr3_1:11047812-11047831 | Msa0348510:CDS | 25.0% |
| !! | TTGGGTTTGATGATAATTTA+GGG | - | chr3_1:11047813-11047832 | Msa0348510:CDS | 25.0% |
| ! | TATAATGACATGTGTTAATG+TGG | - | chr3_1:11047993-11048012 | Msa0348510:intron | 25.0% |
| !! | TTAGGTTTGATGATAATTGA+GGG | - | chr3_1:11048060-11048079 | Msa0348510:intron | 25.0% |
| ! | TGGAATTTAGTAAAGTTCAT+AGG | - | chr3_1:11048357-11048376 | Msa0348510:CDS | 25.0% |
| !! | TCTGTCCTAATTTTTCTAAT+AGG | + | chr3_1:11048521-11048540 | None:intergenic | 25.0% |
| !! | AAACAAGTATTGTCAAATAG+CGG | + | chr3_1:11048573-11048592 | None:intergenic | 25.0% |
| ! | TAAGTGAGAAATGTATTCAT+TGG | - | chr3_1:11048652-11048671 | Msa0348510:intron | 25.0% |
| ! | AAGTGAGAAATGTATTCATT+GGG | - | chr3_1:11048653-11048672 | Msa0348510:intron | 25.0% |
| ! | ATTAGGATAATTCAAATGGA+AGG | + | chr3_1:11048734-11048753 | None:intergenic | 25.0% |
| ! | TAGATTTCACAAAACTAAAG+GGG | + | chr3_1:11048855-11048874 | None:intergenic | 25.0% |
| ! | AATTGGGATAATATGGAAAA+CGG | + | chr3_1:11049076-11049095 | None:intergenic | 25.0% |
| ! | TTCAAGTAATTGGGATAATA+TGG | + | chr3_1:11049083-11049102 | None:intergenic | 25.0% |
| ! | AAATAATGTAATCAGAGAGA+TGG | - | chr3_1:11049147-11049166 | Msa0348510:intron | 25.0% |
| ! | TTTCATATATGGATAACTGT+AGG | + | chr3_1:11049344-11049363 | None:intergenic | 25.0% |
| !! | CAATGCAATCTTTTCATATA+TGG | + | chr3_1:11049355-11049374 | None:intergenic | 25.0% |
| ! | ATAAATGTATCCAATAGGTT+TGG | + | chr3_1:11049379-11049398 | None:intergenic | 25.0% |
| ! | AAAAACTATTCCACAAAACA+TGG | + | chr3_1:11049514-11049533 | None:intergenic | 25.0% |
| ! | AAGCTACTCAATATATCAAA+AGG | + | chr3_1:11049547-11049566 | None:intergenic | 25.0% |
| !!! | TCATGAAAACATTAATTTGC+AGG | - | chr3_1:11049860-11049879 | Msa0348510:intron | 25.0% |
| !! | GTAGAGTTATTTCATAAGTT+CGG | + | chr3_1:11050088-11050107 | None:intergenic | 25.0% |
| ! | AATCCAAATGCTTACATTTA+GGG | + | chr3_1:11050340-11050359 | None:intergenic | 25.0% |
| ! | AAATCCAAATGCTTACATTT+AGG | + | chr3_1:11050341-11050360 | None:intergenic | 25.0% |
| !! | AATTTTCCGAAAACTCTATT+CGG | + | chr3_1:11050377-11050396 | None:intergenic | 25.0% |
| ! | ATAGATGCTTATGAATAAAG+AGG | + | chr3_1:11050971-11050990 | None:intergenic | 25.0% |
| ! | AGCATCTATAACCTTATAAT+TGG | - | chr3_1:11050982-11051001 | Msa0348510:intron | 25.0% |
| ! | GCATCTATAACCTTATAATT+GGG | - | chr3_1:11050983-11051002 | Msa0348510:intron | 25.0% |
| ! | ACATTTGATTCCCAATTATA+AGG | + | chr3_1:11050996-11051015 | None:intergenic | 25.0% |
| !!! | AAAAGTTCTAAGAAAGTAGA+AGG | - | chr3_1:11051028-11051047 | Msa0348510:intron | 25.0% |
| !!! | ATTTAGTTTCACCACTTTTT+AGG | - | chr3_1:11051721-11051740 | Msa0348510:five_prime_UTR | 25.0% |
| !!! | TTTAGTTTCACCACTTTTTA+GGG | - | chr3_1:11051722-11051741 | Msa0348510:five_prime_UTR | 25.0% |
| !! | TAAATGGATATTGTTGTTGT+AGG | - | chr3_1:11051747-11051766 | Msa0348510:five_prime_UTR | 25.0% |
| ! | ATTTACTTCTTGGTAAAGTT+GGG | - | chr3_1:11051794-11051813 | Msa0348510:five_prime_UTR | 25.0% |
| !! | TTTAAGATATTGTCTGTCAA+TGG | - | chr3_1:11051844-11051863 | Msa0348510:five_prime_UTR | 25.0% |
| AAATTTGAAAGCAAAGGAAG+GGG | + | chr3_1:11047324-11047343 | None:intergenic | 30.0% | |
| GAAATTTGAAAGCAAAGGAA+GGG | + | chr3_1:11047325-11047344 | None:intergenic | 30.0% | |
| ! | GAAGAAGGTAACAATTTTGA+AGG | + | chr3_1:11047348-11047367 | None:intergenic | 30.0% |
| ATCAAATTGGGAAATTGAAC+AGG | + | chr3_1:11047370-11047389 | None:intergenic | 30.0% | |
| ! | AAGTGATTATTTAGGGTTTC+TGG | - | chr3_1:11047555-11047574 | Msa0348510:CDS | 30.0% |
| ! | AGTGATTATTTAGGGTTTCT+GGG | - | chr3_1:11047556-11047575 | Msa0348510:CDS | 30.0% |
| ! | GATGATAATTTAGGGTTTCT+AGG | - | chr3_1:11047821-11047840 | Msa0348510:CDS | 30.0% |
| ! | CTTAGGTTTGATGATAATTG+AGG | - | chr3_1:11048059-11048078 | Msa0348510:intron | 30.0% |
| TGGAATTTAGTATGATTCAC+AGG | - | chr3_1:11048107-11048126 | Msa0348510:intron | 30.0% | |
| TCAATTGAGCTTTGCTTATT+TGG | - | chr3_1:11048264-11048283 | Msa0348510:CDS | 30.0% | |
| CAATTGAGCTTTGCTTATTT+GGG | - | chr3_1:11048265-11048284 | Msa0348510:CDS | 30.0% | |
| ! | TTTGGGTTTGATGATAATTG+AGG | - | chr3_1:11048282-11048301 | Msa0348510:CDS | 30.0% |
| ! | TTGGGTTTGATGATAATTGA+GGG | - | chr3_1:11048283-11048302 | Msa0348510:CDS | 30.0% |
| AATACTTGTTTAAGCCTTCT+TGG | - | chr3_1:11048582-11048601 | Msa0348510:intron | 30.0% | |
| AGTGAGAAATGTATTCATTG+GGG | - | chr3_1:11048654-11048673 | Msa0348510:intron | 30.0% | |
| ! | TTACGATGGGTATGTTTTAT+TGG | - | chr3_1:11048690-11048709 | Msa0348510:intron | 30.0% |
| !! | TACGATGGGTATGTTTTATT+GGG | - | chr3_1:11048691-11048710 | Msa0348510:intron | 30.0% |
| GAGCATTAGGATAATTCAAA+TGG | + | chr3_1:11048738-11048757 | None:intergenic | 30.0% | |
| TTTGAATTATCCTAATGCTC+TGG | - | chr3_1:11048738-11048757 | Msa0348510:intron | 30.0% | |
| ATTGGGATAATATGGAAAAC+GGG | + | chr3_1:11049075-11049094 | None:intergenic | 30.0% | |
| AAGCTTCACTTCAAGTAATT+GGG | + | chr3_1:11049092-11049111 | None:intergenic | 30.0% | |
| CTTCTATAACCATCTTCATT+CGG | + | chr3_1:11049183-11049202 | None:intergenic | 30.0% | |
| ! | CTGAAGTCTTTTATAAGTGT+AGG | - | chr3_1:11049219-11049238 | Msa0348510:intron | 30.0% |
| GATACATTTATGATTACACC+TGG | - | chr3_1:11049388-11049407 | Msa0348510:intron | 30.0% | |
| TAACAAAGAGGAAAGAATGA+AGG | + | chr3_1:11049450-11049469 | None:intergenic | 30.0% | |
| GATTTAATGCTGTAGCAAAA+TGG | - | chr3_1:11049484-11049503 | Msa0348510:intron | 30.0% | |
| GACAATACTTTGTACTAGAT+CGG | + | chr3_1:11049688-11049707 | None:intergenic | 30.0% | |
| !! | AAAACATTAATTTGCAGGCT+CGG | - | chr3_1:11049865-11049884 | Msa0348510:intron | 30.0% |
| TATGAAATAACTCTACAGAG+AGG | - | chr3_1:11050092-11050111 | Msa0348510:intron | 30.0% | |
| TTACAAATGCAATGCATTCA+TGG | + | chr3_1:11050126-11050145 | None:intergenic | 30.0% | |
| ! | ATATCTCCGAATAGAGTTTT+CGG | - | chr3_1:11050368-11050387 | Msa0348510:intron | 30.0% |
| ! | GTTTTCGGAAAATTTACTGT+CGG | - | chr3_1:11050383-11050402 | Msa0348510:intron | 30.0% |
| ! | TTTTCGGAAAATTTACTGTC+GGG | - | chr3_1:11050384-11050403 | Msa0348510:intron | 30.0% |
| ! | TATCTAAAATCTGCTTCGAA+TGG | + | chr3_1:11050562-11050581 | None:intergenic | 30.0% |
| TTCCTGGTAAACATTCTTAA+CGG | + | chr3_1:11050847-11050866 | None:intergenic | 30.0% | |
| !! | TTTTTAGTCATGATCGATGA+TGG | - | chr3_1:11051076-11051095 | Msa0348510:intron | 30.0% |
| GAACAAAAACAATACAAGCA+CGG | - | chr3_1:11051406-11051425 | Msa0348510:intron | 30.0% | |
| ATACCAGGCAAAGAAAAAAA+GGG | + | chr3_1:11051658-11051677 | None:intergenic | 30.0% | |
| TATACCAGGCAAAGAAAAAA+AGG | + | chr3_1:11051659-11051678 | None:intergenic | 30.0% | |
| !!! | ACCACTTTTTAGGGTTTAAA+TGG | - | chr3_1:11051731-11051750 | Msa0348510:five_prime_UTR | 30.0% |
| TCCATTTAAACCCTAAAAAG+TGG | + | chr3_1:11051735-11051754 | None:intergenic | 30.0% | |
| CTAGTACATGATTTACTTCT+TGG | - | chr3_1:11051784-11051803 | Msa0348510:five_prime_UTR | 30.0% | |
| GATTTACTTCTTGGTAAAGT+TGG | - | chr3_1:11051793-11051812 | Msa0348510:five_prime_UTR | 30.0% | |
| AAAACAACAATGAAACCAAC+TGG | + | chr3_1:11051823-11051842 | None:intergenic | 30.0% | |
| GGAAATTTGAAAGCAAAGGA+AGG | + | chr3_1:11047326-11047345 | None:intergenic | 35.0% | |
| GAAGGGAAATTTGAAAGCAA+AGG | + | chr3_1:11047330-11047349 | None:intergenic | 35.0% | |
| CTTCTTCATGGCATCAAATT+GGG | + | chr3_1:11047382-11047401 | None:intergenic | 35.0% | |
| TCTTCTTCATGGCATCAAAT+TGG | + | chr3_1:11047383-11047402 | None:intergenic | 35.0% | |
| AAAAACTTACAGCAGGGAAA+CGG | + | chr3_1:11047416-11047435 | None:intergenic | 35.0% | |
| AGCAGAAAAAACTTACAGCA+GGG | + | chr3_1:11047422-11047441 | None:intergenic | 35.0% | |
| AAGCAGAAAAAACTTACAGC+AGG | + | chr3_1:11047423-11047442 | None:intergenic | 35.0% | |
| ! | AATTTAGGGTTTCTAGGTTG+TGG | - | chr3_1:11047827-11047846 | Msa0348510:CDS | 35.0% |
| ! | ATTTAGGGTTTCTAGGTTGT+GGG | - | chr3_1:11047828-11047847 | Msa0348510:CDS | 35.0% |
| !! | GGAATTTTGGTCTGATTCAT+AGG | - | chr3_1:11047888-11047907 | Msa0348510:CDS | 35.0% |
| CTAAGTAACCAAAGCTCAAT+TGG | + | chr3_1:11048044-11048063 | None:intergenic | 35.0% | |
| ! | CAATTGAGCTTTGGTTACTT+AGG | - | chr3_1:11048042-11048061 | Msa0348510:intron | 35.0% |
| TAATTGAGGGTTACTAGTTG+TGG | - | chr3_1:11048073-11048092 | Msa0348510:intron | 35.0% | |
| AATTGAGGGTTACTAGTTGT+GGG | - | chr3_1:11048074-11048093 | Msa0348510:intron | 35.0% | |
| TGATGATAATTGAGGGTTTC+TGG | - | chr3_1:11048290-11048309 | Msa0348510:CDS | 35.0% | |
| GATGATAATTGAGGGTTTCT+GGG | - | chr3_1:11048291-11048310 | Msa0348510:CDS | 35.0% | |
| !! | TAATGGGTTATTGATAGCAC+TGG | + | chr3_1:11048453-11048472 | None:intergenic | 35.0% |
| AGCAGATGTAGCGAAATAAT+GGG | + | chr3_1:11048469-11048488 | None:intergenic | 35.0% | |
| TAGCAGATGTAGCGAAATAA+TGG | + | chr3_1:11048470-11048489 | None:intergenic | 35.0% | |
| GAAAAATTAGGACAGAGTCA+CGG | - | chr3_1:11048525-11048544 | Msa0348510:intron | 35.0% | |
| ATTGGGTTAACATACCTCTT+TGG | - | chr3_1:11048708-11048727 | Msa0348510:intron | 35.0% | |
| ! | CTTCAAATTTCCAGAGCATT+AGG | + | chr3_1:11048751-11048770 | None:intergenic | 35.0% |
| AGGATCATCGAATTCACAAA+CGG | + | chr3_1:11048786-11048805 | None:intergenic | 35.0% | |
| ! | ATTCGATGATCCTTTTGTGA+TGG | - | chr3_1:11048793-11048812 | Msa0348510:intron | 35.0% |
| ! | TGATCCTTTTGTGATGGTTA+CGG | - | chr3_1:11048799-11048818 | Msa0348510:intron | 35.0% |
| CAAGCTTCACTTCAAGTAAT+TGG | + | chr3_1:11049093-11049112 | None:intergenic | 35.0% | |
| ATGTAATCAGAGAGATGGAT+TGG | - | chr3_1:11049152-11049171 | Msa0348510:intron | 35.0% | |
| TTGGTTAAACCGAATGAAGA+TGG | - | chr3_1:11049171-11049190 | Msa0348510:intron | 35.0% | |
| CATATATGGATAACTGTAGG+AGG | + | chr3_1:11049341-11049360 | None:intergenic | 35.0% | |
| ! | ATTGCATTGACCAAACCTAT+TGG | - | chr3_1:11049366-11049385 | Msa0348510:intron | 35.0% |
| TTATGATTACACCTGGAGTT+CGG | - | chr3_1:11049395-11049414 | Msa0348510:intron | 35.0% | |
| AGCATAGAACACTAACAAAG+AGG | + | chr3_1:11049462-11049481 | None:intergenic | 35.0% | |
| TCTATAGCACTATAGTGTAG+CGG | - | chr3_1:11049639-11049658 | Msa0348510:intron | 35.0% | |
| AGCAACTCACAAACTAAAAC+AGG | + | chr3_1:11049945-11049964 | None:intergenic | 35.0% | |
| ! | TTTTCTTACAGCAAAAGCTC+TGG | - | chr3_1:11050037-11050056 | Msa0348510:intron | 35.0% |
| TGCATTGCATTTGTAAGTTG+TGG | - | chr3_1:11050130-11050149 | Msa0348510:intron | 35.0% | |
| AAGTAAAATCGGTCTATGCA+TGG | + | chr3_1:11050213-11050232 | None:intergenic | 35.0% | |
| AACACCAGCACAAGTAAAAT+CGG | + | chr3_1:11050224-11050243 | None:intergenic | 35.0% | |
| AATTTCCGATTCTCATCTCT+CGG | - | chr3_1:11050275-11050294 | Msa0348510:intron | 35.0% | |
| TGATCAGTTCATACTTAGCA+TGG | + | chr3_1:11050317-11050336 | None:intergenic | 35.0% | |
| TCACCCTAAATGTAAGCATT+TGG | - | chr3_1:11050334-11050353 | Msa0348510:intron | 35.0% | |
| AACCGTTAAGAATGTTTACC+AGG | - | chr3_1:11050842-11050861 | Msa0348510:intron | 35.0% | |
| TGTTTGATTACAGCTTGAGT+TGG | - | chr3_1:11051106-11051125 | Msa0348510:intron | 35.0% | |
| GTTTGATTACAGCTTGAGTT+GGG | - | chr3_1:11051107-11051126 | Msa0348510:intron | 35.0% | |
| TCTATTGCCATACTTGGATT+GGG | + | chr3_1:11051278-11051297 | None:intergenic | 35.0% | |
| ATCTATTGCCATACTTGGAT+TGG | + | chr3_1:11051279-11051298 | None:intergenic | 35.0% | |
| CCATTATCTATTGCCATACT+TGG | + | chr3_1:11051284-11051303 | None:intergenic | 35.0% | |
| CCAAGTATGGCAATAGATAA+TGG | - | chr3_1:11051281-11051300 | Msa0348510:intron | 35.0% | |
| ! | TAGATAATGGTTCAGAACCA+AGG | - | chr3_1:11051294-11051313 | Msa0348510:intron | 35.0% |
| ! | AGATAATGGTTCAGAACCAA+GGG | - | chr3_1:11051295-11051314 | Msa0348510:intron | 35.0% |
| !! | TTTTCCTTTGATAACTCCCT+TGG | + | chr3_1:11051314-11051333 | None:intergenic | 35.0% |
| ! | TTTCATGTAAGTTGGCATTC+AGG | + | chr3_1:11051382-11051401 | None:intergenic | 35.0% |
| ! | GTTCTCGTTTTCATGTAAGT+TGG | + | chr3_1:11051390-11051409 | None:intergenic | 35.0% |
| ATGCAACATGAAGAAATTCC+AGG | - | chr3_1:11051473-11051492 | Msa0348510:intron | 35.0% | |
| AACATGAAGAAATTCCAGGT+TGG | - | chr3_1:11051477-11051496 | Msa0348510:intron | 35.0% | |
| TAGTATCTACACAAGGTCAT+TGG | + | chr3_1:11051682-11051701 | None:intergenic | 35.0% | |
| ! | CATTTGCTAGTATCTACACA+AGG | + | chr3_1:11051689-11051708 | None:intergenic | 35.0% |
| TGGGAAATTGAACAGGAAGA+AGG | + | chr3_1:11047363-11047382 | None:intergenic | 40.0% | |
| GGTATCAAGCTTCTTCTTCA+TGG | + | chr3_1:11047394-11047413 | None:intergenic | 40.0% | |
| AAAACTTACAGCAGGGAAAC+GGG | + | chr3_1:11047415-11047434 | None:intergenic | 40.0% | |
| ACCCAGATGCAAAAACACAA+CGG | + | chr3_1:11047478-11047497 | None:intergenic | 40.0% | |
| ! | TATTTAGGGTTTCTGGGTTG+TGG | - | chr3_1:11047562-11047581 | Msa0348510:CDS | 40.0% |
| ! | ATTTAGGGTTTCTGGGTTGT+GGG | - | chr3_1:11047563-11047582 | Msa0348510:CDS | 40.0% |
| ! | TACATGTGTAAGTGTCGTGT+TGG | - | chr3_1:11047754-11047773 | Msa0348510:CDS | 40.0% |
| ! | GTAAGTGTCGTGTTGGATAT+TGG | - | chr3_1:11047761-11047780 | Msa0348510:CDS | 40.0% |
| ! | TTTAGGGTTTCTAGGTTGTG+GGG | - | chr3_1:11047829-11047848 | Msa0348510:CDS | 40.0% |
| ! | GATGGGTATGACTGGAATTT+TGG | - | chr3_1:11047875-11047894 | Msa0348510:CDS | 40.0% |
| GACATGTGTTAATGTGGTGT+TGG | - | chr3_1:11047999-11048018 | Msa0348510:intron | 40.0% | |
| ATTGAGGGTTACTAGTTGTG+GGG | - | chr3_1:11048075-11048094 | Msa0348510:intron | 40.0% | |
| AAACTCACAGAGACCAATAC+CGG | - | chr3_1:11048147-11048166 | Msa0348510:CDS | 40.0% | |
| AAAGCTCAATTGACATGTGC+GGG | + | chr3_1:11048257-11048276 | None:intergenic | 40.0% | |
| CAAAGCTCAATTGACATGTG+CGG | + | chr3_1:11048258-11048277 | None:intergenic | 40.0% | |
| ! | ATTGAGGGTTTCTGGGTTAT+CGG | - | chr3_1:11048298-11048317 | Msa0348510:CDS | 40.0% |
| AATTGGGTAGAGTGGTATGT+TGG | - | chr3_1:11048327-11048346 | Msa0348510:CDS | 40.0% | |
| ATTGGGTAGAGTGGTATGTT+GGG | - | chr3_1:11048328-11048347 | Msa0348510:CDS | 40.0% | |
| TGCTAGCAAAACTGGAATAG+AGG | - | chr3_1:11048485-11048504 | Msa0348510:intron | 40.0% | |
| CTGTTGTTGAGCTTTACGAT+GGG | - | chr3_1:11048677-11048696 | Msa0348510:intron | 40.0% | |
| ATTCAAATGGAAGGCCAAAG+AGG | + | chr3_1:11048725-11048744 | None:intergenic | 40.0% | |
| CTAACCGTAACCATCACAAA+AGG | + | chr3_1:11048806-11048825 | None:intergenic | 40.0% | |
| GGTTACGGTTAGAGAGATAT+AGG | - | chr3_1:11048814-11048833 | Msa0348510:intron | 40.0% | |
| GCAGTTTGCATCAGAATTTG+AGG | + | chr3_1:11048914-11048933 | None:intergenic | 40.0% | |
| GATAATATGGAAAACGGGCA+AGG | + | chr3_1:11049070-11049089 | None:intergenic | 40.0% | |
| ATATATATGACAGCAGCAGC+TGG | + | chr3_1:11049261-11049280 | None:intergenic | 40.0% | |
| TATGATTACACCTGGAGTTC+GGG | - | chr3_1:11049396-11049415 | Msa0348510:intron | 40.0% | |
| ! | AAATGGCTGACCATGTTTTG+TGG | - | chr3_1:11049501-11049520 | Msa0348510:intron | 40.0% |
| CAGAACAGTGTGATTCAACA+AGG | + | chr3_1:11049572-11049591 | None:intergenic | 40.0% | |
| ! | TCGCGGATTGTAGGAAATAA+CGG | + | chr3_1:11049746-11049765 | None:intergenic | 40.0% |
| GAAGATAATGCAAGCAGATG+AGG | - | chr3_1:11049893-11049912 | Msa0348510:intron | 40.0% | |
| TTCTCTCATGTTGTTGACCT+CGG | - | chr3_1:11050008-11050027 | Msa0348510:intron | 40.0% | |
| CTGTAAGAAAATCAAGACCG+AGG | + | chr3_1:11050028-11050047 | None:intergenic | 40.0% | |
| CAGAAACAATTCACAGCTGA+AGG | + | chr3_1:11050189-11050208 | None:intergenic | 40.0% | |
| !! | TAGACCGATTTTACTTGTGC+TGG | - | chr3_1:11050217-11050236 | Msa0348510:intron | 40.0% |
| TTTGACCGAGAGATGAGAAT+CGG | + | chr3_1:11050283-11050302 | None:intergenic | 40.0% | |
| CTGAAATTTGTGTTCACCAC+TGG | + | chr3_1:11050624-11050643 | None:intergenic | 40.0% | |
| CAGTGGTGAACACAAATTTC+AGG | - | chr3_1:11050622-11050641 | Msa0348510:intron | 40.0% | |
| !! | TTTTGAGAGACATTGTCAGC+AGG | - | chr3_1:11050679-11050698 | Msa0348510:intron | 40.0% |
| TTTGAGAGACATTGTCAGCA+GGG | - | chr3_1:11050680-11050699 | Msa0348510:intron | 40.0% | |
| ! | TTCGAACCTTCTCTTTGGAA+CGG | + | chr3_1:11050760-11050779 | None:intergenic | 40.0% |
| TTGTAATGACAGCGATGAAG+AGG | - | chr3_1:11050882-11050901 | Msa0348510:intron | 40.0% | |
| TCATGACTAAAAACTGCAGC+AGG | + | chr3_1:11051069-11051088 | None:intergenic | 40.0% | |
| AAGAGAAACCTTACATCAGC+AGG | - | chr3_1:11051205-11051224 | Msa0348510:intron | 40.0% | |
| AGATTCAACCTGCTGATGTA+AGG | + | chr3_1:11051216-11051235 | None:intergenic | 40.0% | |
| ! | GTTTGCTGAATAGAAGTGCA+AGG | + | chr3_1:11051242-11051261 | None:intergenic | 40.0% |
| CTATTGCCATACTTGGATTG+GGG | + | chr3_1:11051277-11051296 | None:intergenic | 40.0% | |
| AGAACCAAGGGAGTTATCAA+AGG | - | chr3_1:11051307-11051326 | Msa0348510:intron | 40.0% | |
| GAAAATATTGCAGCTCACGA+AGG | - | chr3_1:11051329-11051348 | Msa0348510:intron | 40.0% | |
| TGGCATTCAGGTCAATGTTT+CGG | + | chr3_1:11051370-11051389 | None:intergenic | 40.0% | |
| CATCTTGTCGACATCAGAAA+GGG | + | chr3_1:11051504-11051523 | None:intergenic | 40.0% | |
| ! | TTGCAGCAAACCTTGGTAAT+AGG | - | chr3_1:11051543-11051562 | Msa0348510:intron | 40.0% |
| TAATAGGCTAGATGAGGATG+AGG | - | chr3_1:11051559-11051578 | Msa0348510:intron | 40.0% | |
| GGATGAGGAAGATTATGATG+AGG | - | chr3_1:11051574-11051593 | Msa0348510:intron | 40.0% | |
| TGAGGAAGATTATGATGAGG+AGG | - | chr3_1:11051577-11051596 | Msa0348510:intron | 40.0% | |
| GAAGAGTAGCTAACACCTTA+AGG | - | chr3_1:11051599-11051618 | Msa0348510:intron | 40.0% | |
| GAGTCATGATTTCCACCTTA+AGG | + | chr3_1:11051617-11051636 | None:intergenic | 40.0% | |
| !!! | GATCCCTTTTTTTCTTTGCC+TGG | - | chr3_1:11051652-11051671 | Msa0348510:five_prime_UTR | 40.0% |
| ACTCGTACGAACGCATATTC+CGG | - | chr3_1:11047236-11047255 | Msa0348510:three_prime_UTR | 45.0% | |
| TTTCTGTCCCACACTACCTT+CGG | - | chr3_1:11047278-11047297 | Msa0348510:three_prime_UTR | 45.0% | |
| GTAAGATCCGAAGGTAGTGT+GGG | + | chr3_1:11047288-11047307 | None:intergenic | 45.0% | |
| TGTAAGATCCGAAGGTAGTG+TGG | + | chr3_1:11047289-11047308 | None:intergenic | 45.0% | |
| TGGTGTGATGTAAGATCCGA+AGG | + | chr3_1:11047297-11047316 | None:intergenic | 45.0% | |
| AAAGCAAAGGAAGGGGTGAA+TGG | + | chr3_1:11047317-11047336 | None:intergenic | 45.0% | |
| !! | TGCCGTTGTGTTTTTGCATC+TGG | - | chr3_1:11047473-11047492 | Msa0348510:CDS | 45.0% |
| !! | GCCGTTGTGTTTTTGCATCT+GGG | - | chr3_1:11047474-11047493 | Msa0348510:CDS | 45.0% |
| ! | TTTAGGGTTTCTGGGTTGTG+GGG | - | chr3_1:11047564-11047583 | Msa0348510:CDS | 45.0% |
| AATTGGGTGGAATGGCATGA+TGG | - | chr3_1:11047592-11047611 | Msa0348510:CDS | 45.0% | |
| ATTGGGTGGAATGGCATGAT+GGG | - | chr3_1:11047593-11047612 | Msa0348510:CDS | 45.0% | |
| ! | TTAGGGTTTCTAGGTTGTGG+GGG | - | chr3_1:11047830-11047849 | Msa0348510:CDS | 45.0% |
| AATTGGGTAGAGTGGCATGA+TGG | - | chr3_1:11047857-11047876 | Msa0348510:CDS | 45.0% | |
| ATTGGGTAGAGTGGCATGAT+GGG | - | chr3_1:11047858-11047877 | Msa0348510:CDS | 45.0% | |
| TAGCTCACAGACATTGACAC+TGG | - | chr3_1:11047928-11047947 | Msa0348510:intron | 45.0% | |
| ACAGACATTGACACTGGTCA+CGG | - | chr3_1:11047934-11047953 | Msa0348510:intron | 45.0% | |
| GACATGTGCCAATTGAGCTT+TGG | - | chr3_1:11048033-11048052 | Msa0348510:intron | 45.0% | |
| !!! | GGTCTCTGTGAGTTTTTAGC+AGG | + | chr3_1:11048142-11048161 | None:intergenic | 45.0% |
| GTCAATGTGACTGTTGTGAC+CGG | + | chr3_1:11048169-11048188 | None:intergenic | 45.0% | |
| TGCATGTGTCAATGTCGTGT+CGG | - | chr3_1:11048228-11048247 | Msa0348510:intron | 45.0% | |
| ! | TTGAGGGTTTCTGGGTTATC+GGG | - | chr3_1:11048299-11048318 | Msa0348510:CDS | 45.0% |
| AGTGGTATGTTGGGTTTGAC+TGG | - | chr3_1:11048337-11048356 | Msa0348510:CDS | 45.0% | |
| GCTACATCTGCTAGCAAAAC+TGG | - | chr3_1:11048477-11048496 | Msa0348510:intron | 45.0% | |
| TTGTCAAATAGCGGCGATAG+AGG | + | chr3_1:11048564-11048583 | None:intergenic | 45.0% | |
| !! | GTTTAAGCCTTCTTGGTGCT+TGG | - | chr3_1:11048589-11048608 | Msa0348510:intron | 45.0% |
| AAACCAACCAAGCACCAAGA+AGG | + | chr3_1:11048599-11048618 | None:intergenic | 45.0% | |
| !! | TTCTTGGTGCTTGGTTGGTT+TGG | - | chr3_1:11048598-11048617 | Msa0348510:intron | 45.0% |
| !! | TCTTGGTGCTTGGTTGGTTT+GGG | - | chr3_1:11048599-11048618 | Msa0348510:intron | 45.0% |
| GCTGTTGTTGAGCTTTACGA+TGG | - | chr3_1:11048676-11048695 | Msa0348510:intron | 45.0% | |
| TTAACCAAAACCCGAACTCC+AGG | + | chr3_1:11049409-11049428 | None:intergenic | 45.0% | |
| CACTGTTCTGCTTAGCCAAT+AGG | - | chr3_1:11049582-11049601 | Msa0348510:intron | 45.0% | |
| TTCTGCTTAGCCAATAGGAG+TGG | - | chr3_1:11049587-11049606 | Msa0348510:intron | 45.0% | |
| GACAACACTTCCACTCCTAT+TGG | + | chr3_1:11049600-11049619 | None:intergenic | 45.0% | |
| !! | GTGGAAGTGTTGTCAAACAG+TGG | - | chr3_1:11049606-11049625 | Msa0348510:intron | 45.0% |
| ! | GCACTATAGTGTAGCGGAAT+TGG | - | chr3_1:11049645-11049664 | Msa0348510:intron | 45.0% |
| ! | TGTTGTCAATCGCGGATTGT+AGG | + | chr3_1:11049755-11049774 | None:intergenic | 45.0% |
| ATGCAAGCAGATGAGGATGT+TGG | - | chr3_1:11049900-11049919 | Msa0348510:intron | 45.0% | |
| GGATGTTGGAAAGATAGCAC+TGG | - | chr3_1:11049914-11049933 | Msa0348510:intron | 45.0% | |
| TCTCATCTCTCGGTCAAAGA+CGG | - | chr3_1:11050285-11050304 | Msa0348510:intron | 45.0% | |
| ! | TGTTCACCACTGGTTAGACT+AGG | + | chr3_1:11050614-11050633 | None:intergenic | 45.0% |
| TGGACTTCGAACCTTCTCTT+TGG | + | chr3_1:11050765-11050784 | None:intergenic | 45.0% | |
| ATGTTTACCAGGAAAGCTGC+TGG | - | chr3_1:11050853-11050872 | Msa0348510:intron | 45.0% | |
| AGAGGCTAAGCGGAGTAAAA+TGG | - | chr3_1:11050900-11050919 | Msa0348510:intron | 45.0% | |
| AAGCACGGATATACCTACTC+AGG | - | chr3_1:11051421-11051440 | Msa0348510:intron | 45.0% | |
| ATATCTGTTGCAGCAGGTTC+AGG | + | chr3_1:11051455-11051474 | None:intergenic | 45.0% | |
| TGTTGCATATCTGTTGCAGC+AGG | + | chr3_1:11051461-11051480 | None:intergenic | 45.0% | |
| CCATCTTGTCGACATCAGAA+AGG | + | chr3_1:11051505-11051524 | None:intergenic | 45.0% | |
| CCTTTCTGATGTCGACAAGA+TGG | - | chr3_1:11051502-11051521 | Msa0348510:intron | 45.0% | |
| CCTCATCTAGCCTATTACCA+AGG | + | chr3_1:11051556-11051575 | None:intergenic | 45.0% | |
| ! | CCTTGGTAATAGGCTAGATG+AGG | - | chr3_1:11051553-11051572 | Msa0348510:intron | 45.0% |
| GAGTAGCTAACACCTTAAGG+TGG | - | chr3_1:11051602-11051621 | Msa0348510:intron | 45.0% | |
| CACAAGGTCATTGGTATACC+AGG | + | chr3_1:11051673-11051692 | None:intergenic | 45.0% | |
| GGTAAAGTTGGGTTACCAGT+TGG | - | chr3_1:11051805-11051824 | Msa0348510:five_prime_UTR | 45.0% | |
| !!! | AATAAATATTTTGTTTTTTA+AGG | + | chr3_1:11047184-11047203 | None:intergenic | 5.0% |
| !! | CCTACGAAGTGTCGATTTGC+CGG | + | chr3_1:11047258-11047277 | None:intergenic | 50.0% |
| ! | TTAGGGTTTCTGGGTTGTGG+GGG | - | chr3_1:11047565-11047584 | Msa0348510:CDS | 50.0% |
| !! | TGGGTTGTGGGGGTGTTAAT+TGG | - | chr3_1:11047575-11047594 | Msa0348510:CDS | 50.0% |
| !! | GGGTTGTGGGGGTGTTAATT+GGG | - | chr3_1:11047576-11047595 | Msa0348510:CDS | 50.0% |
| !! | TTGTGGGGGTGTTAATTGGG+TGG | - | chr3_1:11047579-11047598 | Msa0348510:CDS | 50.0% |
| ! | GGGGTGTTAATTGGGTGGAA+TGG | - | chr3_1:11047584-11047603 | Msa0348510:CDS | 50.0% |
| !! | AATGGCATGATGGGTGTGAC+TGG | - | chr3_1:11047602-11047621 | Msa0348510:CDS | 50.0% |
| GCTCACATAGACACCAACAC+CGG | - | chr3_1:11047665-11047684 | Msa0348510:CDS | 50.0% | |
| CGATGTGTCAGTGTTGTGAC+CGG | + | chr3_1:11047687-11047706 | None:intergenic | 50.0% | |
| ! | TAGGTTGTGGGGGTGTGAAT+TGG | - | chr3_1:11047840-11047859 | Msa0348510:CDS | 50.0% |
| ! | AGGTTGTGGGGGTGTGAATT+GGG | - | chr3_1:11047841-11047860 | Msa0348510:CDS | 50.0% |
| !! | AGTGGCATGATGGGTATGAC+TGG | - | chr3_1:11047867-11047886 | Msa0348510:CDS | 50.0% |
| TAGTTGTGGGGTGGTGTGAT+TGG | - | chr3_1:11048087-11048106 | Msa0348510:intron | 50.0% | |
| GTGACTGTTGTGACCGGTAT+TGG | + | chr3_1:11048163-11048182 | None:intergenic | 50.0% | |
| ! | TGAGGGTTTCTGGGTTATCG+GGG | - | chr3_1:11048300-11048319 | Msa0348510:CDS | 50.0% |
| TGGGTTATCGGGGTGTGAAT+TGG | - | chr3_1:11048310-11048329 | Msa0348510:CDS | 50.0% | |
| GGGTTATCGGGGTGTGAATT+GGG | - | chr3_1:11048311-11048330 | Msa0348510:CDS | 50.0% | |
| !! | AAGCCTTCTTGGTGCTTGGT+TGG | - | chr3_1:11048593-11048612 | Msa0348510:intron | 50.0% |
| !! | TACACCTGGAGTTCGGGTTT+TGG | - | chr3_1:11049402-11049421 | Msa0348510:intron | 50.0% |
| ! | CCACTGAGTGTTGTCAATCG+CGG | + | chr3_1:11049763-11049782 | None:intergenic | 50.0% |
| CGCGATTGACAACACTCAGT+GGG | - | chr3_1:11049761-11049780 | Msa0348510:intron | 50.0% | |
| GCGATTGACAACACTCAGTG+GGG | - | chr3_1:11049762-11049781 | Msa0348510:intron | 50.0% | |
| TGTGAGCCTAGTCTAACCAG+TGG | - | chr3_1:11050605-11050624 | Msa0348510:intron | 50.0% | |
| AGGGTTCCTGACTATAGCCA+TGG | - | chr3_1:11050699-11050718 | Msa0348510:intron | 50.0% | |
| CCATGTCCATGGCTATAGTC+AGG | + | chr3_1:11050708-11050727 | None:intergenic | 50.0% | |
| CCTGACTATAGCCATGGACA+TGG | - | chr3_1:11050705-11050724 | Msa0348510:intron | 50.0% | |
| ATCATCACCAGCAGCTTTCC+TGG | + | chr3_1:11050863-11050882 | None:intergenic | 50.0% | |
| ACAGCGATGAAGAGGCTAAG+CGG | - | chr3_1:11050890-11050909 | Msa0348510:intron | 50.0% | |
| TACTGGTAGGGGAAGAGGAA+GGG | - | chr3_1:11051142-11051161 | Msa0348510:intron | 50.0% | |
| AGACGTCCCCAATCCAAGTA+TGG | - | chr3_1:11051268-11051287 | Msa0348510:intron | 50.0% | |
| TTGCAGCAGGTTCAGGCAAT+GGG | + | chr3_1:11051448-11051467 | None:intergenic | 50.0% | |
| ACATCAGAAAGGGACCAACC+TGG | + | chr3_1:11051494-11051513 | None:intergenic | 50.0% | |
| CCGGCAAATCGACACTTCGT+AGG | - | chr3_1:11047255-11047274 | Msa0348510:three_prime_UTR | 55.0% | |
| GTCAGTGTTGTGACCGGTGT+TGG | + | chr3_1:11047681-11047700 | None:intergenic | 55.0% | |
| GGGGTGTGAATTGGGTAGAG+TGG | - | chr3_1:11047849-11047868 | Msa0348510:CDS | 55.0% | |
| GAGGGTTACTAGTTGTGGGG+TGG | - | chr3_1:11048078-11048097 | Msa0348510:intron | 55.0% | |
| GGGGTGTGAATTGGGTAGAG+TGG | - | chr3_1:11047849-11047868 | Msa0348510:CDS | 55.0% | |
| !! | TGGTGCTTGGTTGGTTTGGG+TGG | - | chr3_1:11048602-11048621 | Msa0348510:intron | 55.0% |
| !! | GGTGCTTGGTTGGTTTGGGT+GGG | - | chr3_1:11048603-11048622 | Msa0348510:intron | 55.0% |
| !! | GTGCTTGGTTGGTTTGGGTG+GGG | - | chr3_1:11048604-11048623 | Msa0348510:intron | 55.0% |
| CCGCGATTGACAACACTCAG+TGG | - | chr3_1:11049760-11049779 | Msa0348510:intron | 55.0% | |
| CCTCAGAATGGCCATGTCCA+TGG | + | chr3_1:11050719-11050738 | None:intergenic | 55.0% | |
| CCATGGACATGGCCATTCTG+AGG | - | chr3_1:11050716-11050735 | Msa0348510:intron | 55.0% | |
| !! | GACATGGCCATTCTGAGGCT+GGG | - | chr3_1:11050721-11050740 | Msa0348510:intron | 55.0% |
| !! | ACATGGCCATTCTGAGGCTG+GGG | - | chr3_1:11050722-11050741 | Msa0348510:intron | 55.0% |
| ATCGCGCCGTTCCAAAGAGA+AGG | - | chr3_1:11050751-11050770 | Msa0348510:intron | 55.0% | |
| ! | GTACTGGTAGGGGAAGAGGA+AGG | - | chr3_1:11051141-11051160 | Msa0348510:intron | 55.0% |
| ACTGGTAGGGGAAGAGGAAG+GGG | - | chr3_1:11051143-11051162 | Msa0348510:intron | 55.0% | |
| AGAGGAAGGGGTAGAGGAAG+AGG | - | chr3_1:11051155-11051174 | Msa0348510:intron | 55.0% | |
| TGCAGCAGGTTCAGGCAATG+GGG | + | chr3_1:11051447-11051466 | None:intergenic | 55.0% | |
| GTTGCAGCAGGTTCAGGCAA+TGG | + | chr3_1:11051449-11051468 | None:intergenic | 55.0% | |
| CTGCAGCTTGCAGCAAACCT+TGG | - | chr3_1:11051536-11051555 | Msa0348510:intron | 55.0% | |
| !! | GGACATGGCCATTCTGAGGC+TGG | - | chr3_1:11050720-11050739 | Msa0348510:intron | 60.0% |
| CATCAGCCCCAGCCTCAGAA+TGG | + | chr3_1:11050731-11050750 | None:intergenic | 60.0% | |
| !! | CAGCTTGAGTTGGGCCACAC+TGG | - | chr3_1:11051116-11051135 | Msa0348510:intron | 60.0% |
| !! | CTTGAGTTGGGCCACACTGG+CGG | - | chr3_1:11051119-11051138 | Msa0348510:intron | 60.0% |
| !! | CCACACTGGCGGTACTGGTA+GGG | - | chr3_1:11051130-11051149 | Msa0348510:intron | 60.0% |
| !! | CACACTGGCGGTACTGGTAG+GGG | - | chr3_1:11051131-11051150 | Msa0348510:intron | 60.0% |
| AGGGGAAGAGGAAGGGGTAG+AGG | - | chr3_1:11051149-11051168 | Msa0348510:intron | 60.0% | |
| TCAGGCAATGGGGCCTGAGT+AGG | + | chr3_1:11051437-11051456 | None:intergenic | 60.0% | |
| TTGGGCCACACTGGCGGTAC+TGG | - | chr3_1:11051125-11051144 | Msa0348510:intron | 65.0% | |
| !! | GCCACACTGGCGGTACTGGT+AGG | - | chr3_1:11051129-11051148 | Msa0348510:intron | 65.0% |
| CCCTACCAGTACCGCCAGTG+TGG | + | chr3_1:11051133-11051152 | None:intergenic | 65.0% | |
| !! | GGCGGTACTGGTAGGGGAAG+AGG | - | chr3_1:11051137-11051156 | Msa0348510:intron | 65.0% |
| AGGGGTAGAGGAAGAGGCCG+CGG | - | chr3_1:11051161-11051180 | Msa0348510:intron | 65.0% | |
| AGAGGAAGAGGCCGCGGTCG+AGG | - | chr3_1:11051167-11051186 | Msa0348510:intron | 70.0% | |
| GAGGAAGAGGCCGCGGTCGA+GGG | - | chr3_1:11051168-11051187 | Msa0348510:intron | 70.0% | |
| AGGAAGAGGCCGCGGTCGAG+GGG | - | chr3_1:11051169-11051188 | Msa0348510:intron | 70.0% | |
| CAGTTCGAGCCCCTCGACCG+CGG | + | chr3_1:11051181-11051200 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 11047149 | 11051881 | 11047149 | ID=Msa0348510;Name=Msa0348510 |
| chr3_1 | mRNA | 11047149 | 11051881 | 11047149 | ID=Msa0348510-mRNA-1;Parent=Msa0348510;Name=Msa0348510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=244|1|1|1|1|1|6|274|291 |
| chr3_1 | exon | 11047149 | 11047911 | 11047149 | ID=Msa0348510-mRNA-1:exon:2935;Parent=Msa0348510-mRNA-1 |
| chr3_1 | exon | 11048109 | 11048166 | 11048109 | ID=Msa0348510-mRNA-1:exon:2934;Parent=Msa0348510-mRNA-1 |
| chr3_1 | exon | 11048258 | 11048386 | 11048258 | ID=Msa0348510-mRNA-1:exon:2933;Parent=Msa0348510-mRNA-1 |
| chr3_1 | exon | 11048889 | 11048982 | 11048889 | ID=Msa0348510-mRNA-1:exon:2932;Parent=Msa0348510-mRNA-1 |
| chr3_1 | exon | 11049076 | 11049148 | 11049076 | ID=Msa0348510-mRNA-1:exon:2931;Parent=Msa0348510-mRNA-1 |
| chr3_1 | exon | 11051605 | 11051881 | 11051605 | ID=Msa0348510-mRNA-1:exon:2930;Parent=Msa0348510-mRNA-1 |
| chr3_1 | five_prime_UTR | 11051638 | 11051881 | 11051638 | ID=Msa0348510-mRNA-1:five_prime_utr;Parent=Msa0348510-mRNA-1 |
| chr3_1 | CDS | 11051605 | 11051637 | 11051605 | ID=Msa0348510-mRNA-1:cds;Parent=Msa0348510-mRNA-1 |
| chr3_1 | CDS | 11049076 | 11049148 | 11049076 | ID=Msa0348510-mRNA-1:cds;Parent=Msa0348510-mRNA-1 |
| chr3_1 | CDS | 11048889 | 11048982 | 11048889 | ID=Msa0348510-mRNA-1:cds;Parent=Msa0348510-mRNA-1 |
| chr3_1 | CDS | 11048258 | 11048386 | 11048258 | ID=Msa0348510-mRNA-1:cds;Parent=Msa0348510-mRNA-1 |
| chr3_1 | CDS | 11048109 | 11048166 | 11048109 | ID=Msa0348510-mRNA-1:cds;Parent=Msa0348510-mRNA-1 |
| chr3_1 | CDS | 11047423 | 11047911 | 11047423 | ID=Msa0348510-mRNA-1:cds;Parent=Msa0348510-mRNA-1 |
| chr3_1 | three_prime_UTR | 11047149 | 11047422 | 11047149 | ID=Msa0348510-mRNA-1:three_prime_utr;Parent=Msa0348510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
