AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0348650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348650 MtrunA17_Chr8g0392301 96.827 914 28 1 1 913 7 920 0.0 1838
Msa0348650 MtrunA17_Chr5g0447641 52.013 919 391 12 35 930 263 1154 0.0 904
Msa0348650 MtrunA17_Chr8g0377481 51.357 921 377 17 23 913 21 900 0.0 883
Msa0348650 MtrunA17_Chr3g0122391 50.816 919 395 14 19 913 73 958 0.0 874
Msa0348650 MtrunA17_Chr2g0311191 72.778 180 10 1 314 493 94 234 4.31e-79 256
Msa0348650 MtrunA17_Chr2g0311191 80.882 68 13 0 178 245 21 88 8.93e-31 121
Msa0348650 MtrunA17_Chr1g0150511 34.494 316 179 8 380 674 379 687 1.80e-41 165
Msa0348650 MtrunA17_Chr3g0136601 36.364 297 170 8 380 674 373 652 1.04e-40 162
Msa0348650 MtrunA17_Chr5g0405701 32.440 336 193 7 330 664 462 764 2.48e-40 161
Msa0348650 MtrunA17_Chr8g0371601 32.267 344 183 5 330 664 424 726 3.88e-40 161
Msa0348650 MtrunA17_Chr4g0013831 28.883 367 197 9 370 729 337 646 2.89e-30 128
Msa0348650 MtrunA17_Chr7g0269631 30.719 306 157 4 370 674 337 588 8.56e-28 120
Msa0348650 MtrunA17_Chr1g0197591 28.704 324 188 11 370 682 371 662 1.25e-23 107
Msa0348650 MtrunA17_Chr1g0194741 29.276 304 165 10 363 649 381 651 2.30e-22 103
Msa0348650 MtrunA17_Chr1g0190021 25.926 189 140 0 356 544 350 538 8.32e-17 85.5
Msa0348650 MtrunA17_Chr7g0274831 24.103 195 148 0 364 558 362 556 3.58e-14 77.0
Msa0348650 MtrunA17_Chr1g0186431 28.859 149 106 0 356 504 344 492 1.15e-11 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348650 AT2G01830.2 70.166 905 248 11 19 913 112 1004 0.0 1262
Msa0348650 AT2G01830.5 70.166 905 248 11 19 913 101 993 0.0 1261
Msa0348650 AT2G01830.1 70.166 905 248 11 19 913 89 981 0.0 1261
Msa0348650 AT2G01830.4 70.166 905 248 11 19 913 89 981 0.0 1261
Msa0348650 AT2G01830.6 70.166 905 248 11 19 913 89 981 0.0 1261
Msa0348650 AT2G01830.3 70.166 905 248 11 19 913 89 981 0.0 1261
Msa0348650 AT5G35750.1 53.139 924 373 15 10 913 211 1094 0.0 907
Msa0348650 AT1G27320.1 51.925 909 372 14 26 913 85 949 0.0 870
Msa0348650 AT2G17820.1 32.754 345 180 7 330 664 451 753 7.62e-42 167
Msa0348650 AT5G10720.1 35.254 295 142 6 380 674 369 614 1.10e-40 162
Msa0348650 AT1G66340.1 27.837 467 257 11 370 829 336 729 7.91e-35 143
Msa0348650 AT2G47430.1 30.723 332 183 11 366 684 384 681 1.02e-30 131
Msa0348650 AT2G40940.1 30.655 336 168 7 350 674 306 587 7.93e-28 120

Find 244 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTCAACTGTTGAAATT+TGG 0.052805 3_1:-11428878 Msa0348650:three_prime_UTR
GAAATGTTAAATAAATTAAT+TGG 0.109433 3_1:+11428782 None:intergenic
ACCTTCTTCACCTCAGTTAT+TGG 0.154797 3_1:+11430446 None:intergenic
CATGAAAGTAAGCTTGATTT+TGG 0.185418 3_1:-11432225 Msa0348650:CDS
TCCAATTTGGCGGTGCCTTC+TGG 0.187946 3_1:+11432069 None:intergenic
GGGATATAAATCACATGTTT+TGG 0.211169 3_1:+11428803 None:intergenic
CACTTCAACTGTTGAAATTT+GGG 0.226869 3_1:-11428877 Msa0348650:three_prime_UTR
CAAACATACCCATCCATTTC+TGG 0.237868 3_1:+11429492 None:intergenic
TGCTGGTCATCAAGCAATTT+TGG 0.256110 3_1:-11432331 Msa0348650:CDS
AGCTTGCCTTCAGCAAGTTT+TGG 0.267697 3_1:-11429751 Msa0348650:CDS
TGAGAACCCAACAACCTAAA+AGG 0.270552 3_1:+11432792 None:intergenic
TTCTCAAATTAATGTTTCTA+TGG 0.271180 3_1:-11433530 Msa0348650:CDS
CAAGTTTGATGCTTGCTTCA+TGG 0.271579 3_1:-11429526 Msa0348650:CDS
AGTGAGAAGGAAAGAGGTTT+TGG 0.273718 3_1:-11433448 Msa0348650:CDS
GAAGAGGAGTTCAGAGAAAT+AGG 0.276523 3_1:-11433704 Msa0348650:five_prime_UTR
AGCTCTTCTGTTGTTGGGTT+GGG 0.283441 3_1:+11432720 None:intergenic
CAAAATCAAGCTTACTTTCA+TGG 0.285290 3_1:+11432226 None:intergenic
ATTGGTTGCCATACATGATT+AGG 0.295381 3_1:+11432274 None:intergenic
GGCTTTAAGCCCTCTAAAAC+TGG 0.307736 3_1:+11430403 None:intergenic
ACCAGAAGGCACCGCCAAAT+TGG 0.310432 3_1:-11432070 Msa0348650:CDS
AAAACTCTTCATCAGCAATT+AGG 0.316824 3_1:+11430765 None:intergenic
ATCCTCTACAGAAGAAAATA+AGG 0.317380 3_1:+11428846 None:intergenic
ATTATGTAATGAGAGGAATT+TGG 0.330385 3_1:-11428739 Msa0348650:three_prime_UTR
GGATCTCCCATAACAATATC+TGG 0.330567 3_1:+11431173 None:intergenic
CAGAAGGGTTTCTGTAATAA+TGG 0.331115 3_1:+11433331 None:intergenic
AGCTCGACTTCTAGAAATTA+TGG 0.341838 3_1:-11430602 Msa0348650:CDS
CTTAAAGCCGTTGTGGTTGA+TGG 0.345003 3_1:-11430389 Msa0348650:CDS
AATGAACTTTAACAAATATA+TGG 0.345150 3_1:+11430945 None:intergenic
ATCATTTGATGTTTCCTGTA+TGG 0.346790 3_1:+11432198 None:intergenic
CTTGTATCCTATTCCTATAC+AGG 0.348082 3_1:-11433989 Msa0348650:intron
GTGTTAGTTGGTGTTGTAAT+TGG 0.354382 3_1:-11433663 Msa0348650:five_prime_UTR
TTCGAAAGGCCGCTACTTAG+TGG 0.361977 3_1:-11433150 Msa0348650:CDS
GAAAGAGATTTAGTGTTAGT+TGG 0.362266 3_1:-11433675 Msa0348650:five_prime_UTR
CTGTTGATGAACGCAACAAC+TGG 0.363012 3_1:-11430802 Msa0348650:CDS
GGATATTCAAATGCCAGAAA+TGG 0.363538 3_1:-11429505 Msa0348650:CDS
AGAGAGGACATCATCGAGTA+TGG 0.366813 3_1:+11431405 None:intergenic
TAATGAGCTCTTCTGTTGTT+GGG 0.368418 3_1:+11432715 None:intergenic
TTGTATCATCTACAGCAAAA+TGG 0.369256 3_1:-11433484 Msa0348650:CDS
TTATGAACAAGTCACCTTGA+TGG 0.371342 3_1:-11430702 Msa0348650:CDS
TTGCTCTCTTATTATTGTTT+AGG 0.373439 3_1:+11428704 None:intergenic
TTACCTAAAATGCCATTCAT+AGG 0.373526 3_1:+11431756 None:intergenic
TTAATGAGCTCTTCTGTTGT+TGG 0.375076 3_1:+11432714 None:intergenic
TAAATGCCTAGTTGAACTAA+TGG 0.378453 3_1:-11430552 Msa0348650:CDS
GTAGAAAGTGCTGTCCAATT+TGG 0.380449 3_1:+11432056 None:intergenic
AGAGTGTGATGTGAAGTAGA+AGG 0.381991 3_1:-11434218 Msa0348650:five_prime_UTR
GGGAGCTTAGATTTGTAAAC+AGG 0.383887 3_1:+11432744 None:intergenic
TCTAGAGTTGAATCTTCAAA+TGG 0.385174 3_1:+11434368 None:intergenic
CTAGTCACAGCAGCTCTAAC+AGG 0.385909 3_1:+11430362 None:intergenic
TCAAGCTTTCCATTTGTTGC+GGG 0.386642 3_1:+11430905 None:intergenic
GAAACAATGTTTACCTGTAT+AGG 0.388064 3_1:+11433976 None:intergenic
GATCTTCAGTGTGCGCCAAC+TGG 0.390728 3_1:-11429919 Msa0348650:CDS
TTGGTTGCCATACATGATTA+GGG 0.392434 3_1:+11432275 None:intergenic
TTCTTCTGTAGAGGATGAAT+AGG 0.393784 3_1:-11428839 Msa0348650:three_prime_UTR
AAATGTTAAATAAATTAATT+GGG 0.394453 3_1:+11428783 None:intergenic
TAAAGTTCCAGATATTGTTA+TGG 0.398050 3_1:-11431180 Msa0348650:CDS
AGTCGCAAATGCCATCAATA+AGG 0.400064 3_1:-11430306 Msa0348650:CDS
AAACATCACCTTCTTCGTAT+TGG 0.401351 3_1:+11432256 None:intergenic
GAAGCCACTGAGAGCTAGTA+TGG 0.403349 3_1:-11429778 Msa0348650:CDS
AAAGTTCCAGATATTGTTAT+GGG 0.405546 3_1:-11431179 Msa0348650:CDS
CTTCTGTTGTTGGGTTGGGA+GGG 0.408038 3_1:+11432724 None:intergenic
TTTGTGATTCATCTATTAGT+TGG 0.414150 3_1:-11432020 Msa0348650:CDS
AACAGAAAGCCCGCAACAAA+TGG 0.414966 3_1:-11430914 Msa0348650:CDS
GTTTCTATGGATTCTTCTGA+TGG 0.417958 3_1:-11433517 Msa0348650:CDS
CGAACTGAAGTTGAACCATT+AGG 0.418453 3_1:+11429696 None:intergenic
TGTGTCGAAGACACTGGAAT+TGG 0.420012 3_1:-11430677 Msa0348650:CDS
CTCAAGCTTTCCATTTGTTG+CGG 0.424158 3_1:+11430904 None:intergenic
TCAGTGTGCGCCAACTGGAC+TGG 0.427277 3_1:-11429914 Msa0348650:CDS
CAAATTGTAACAAATCTTGT+TGG 0.428971 3_1:-11431137 Msa0348650:CDS
ATGTTTACCTGTATAGGAAT+AGG 0.431158 3_1:+11433982 None:intergenic
TGGAATTGGAATTCCTTTCT+CGG 0.432442 3_1:-11430663 Msa0348650:CDS
TACTAATATTCGTAGCTAGA+AGG 0.432556 3_1:+11429853 None:intergenic
GGTTGACAGTAACACTGAAT+TGG 0.434929 3_1:+11433388 None:intergenic
GAGCTCTTCTGTTGTTGGGT+TGG 0.436168 3_1:+11432719 None:intergenic
GATATTGTTATGGGAGATCC+TGG 0.437067 3_1:-11431170 Msa0348650:CDS
GTCTAGACACAAAGGTTTAG+AGG 0.439244 3_1:-11431368 Msa0348650:intron
TGGAATTCCTTTCTCGGCCC+AGG 0.440548 3_1:-11430657 Msa0348650:CDS
AAGGCATGAAAATCCTATCC+TGG 0.445835 3_1:+11430639 None:intergenic
GAGTGTGATGTGAAGTAGAA+GGG 0.448230 3_1:-11434217 Msa0348650:five_prime_UTR
AATTATGGTGGTACCGGCAT+TGG 0.449454 3_1:-11430587 Msa0348650:CDS
TCTTCTGTTGTTGGGTTGGG+AGG 0.450263 3_1:+11432723 None:intergenic
ATAATGAGAGCTAGAGCTAC+TGG 0.450935 3_1:-11432834 Msa0348650:CDS
GCAGAATCAGCACCACCCTT+TGG 0.456173 3_1:-11433619 Msa0348650:CDS
TTCTAAGTTACAAGAACAAA+CGG 0.456810 3_1:-11433595 Msa0348650:CDS
CATTCTGTTTCCAGTCCAGT+TGG 0.457489 3_1:+11429904 None:intergenic
AAGAGCAGCTTTGCCGCCAT+CGG 0.457728 3_1:+11429569 None:intergenic
GGGAACAGGCAAGAGACAGC+TGG 0.459375 3_1:-11429730 Msa0348650:CDS
TGAATCTTCAAATGGGTCCT+TGG 0.459894 3_1:+11434376 None:intergenic
GACGAACCAACCAACCAATC+TGG 0.460233 3_1:-11434026 Msa0348650:five_prime_UTR
TCCAATAACTGAGGTGAAGA+AGG 0.463469 3_1:-11430447 Msa0348650:CDS
TTGCAATTTGTGTAGTGGTC+AGG 0.465769 3_1:-11429023 Msa0348650:intron
CCAAATTTCAACAGTTGAAG+TGG 0.471544 3_1:+11428878 None:intergenic
AAATGCCTAGTTGAACTAAT+GGG 0.474700 3_1:-11430551 Msa0348650:CDS
ATAGATGAATCACAAAGAAT+AGG 0.477698 3_1:+11432027 None:intergenic
CTATCCCAAGTCTCTTCAAA+TGG 0.479746 3_1:+11430336 None:intergenic
GAGTCTATTGATATGATGTC+TGG 0.479960 3_1:-11432976 Msa0348650:CDS
AATAAGGCTGTTTCCTTGTG+TGG 0.480317 3_1:-11430290 Msa0348650:CDS
TCTATGATTGTAGGAATGCT+TGG 0.481646 3_1:-11431589 Msa0348650:intron
TCACTTGTGGAAAATTTACT+TGG 0.482007 3_1:-11432360 Msa0348650:CDS
AGATACCATTTGAAGAGACT+TGG 0.482768 3_1:-11430341 Msa0348650:CDS
GTCAAATAAACTTTATAAGC+CGG 0.482875 3_1:-11430526 Msa0348650:CDS
ACTGATCCCCTAATCATGTA+TGG 0.483235 3_1:-11432282 Msa0348650:CDS
GAGCTATCTGCCTGAACAAA+AGG 0.486203 3_1:+11430620 None:intergenic
TTGAGACCAGATTGGTTGGT+TGG 0.487976 3_1:+11434020 None:intergenic
GTGGAAATACTTCAGCCCTC+TGG 0.488857 3_1:+11428897 None:intergenic
CAAGGAAACAGCCTTATTGA+TGG 0.489776 3_1:+11430295 None:intergenic
TCTAAGTTACAAGAACAAAC+GGG 0.489859 3_1:-11433594 Msa0348650:CDS
TTCCTTTCTCGGCCCAGGAT+AGG 0.494865 3_1:-11430652 Msa0348650:CDS
TCAGTTCGAAGCCTTCTGTT+CGG 0.494919 3_1:-11429681 Msa0348650:CDS
AGTATGGAACGAATGTCAAA+TGG 0.495507 3_1:+11431421 None:intergenic
TTTGATAAAGCTAAATCCAC+AGG 0.495547 3_1:-11429822 Msa0348650:CDS
TCATTCAAGCACATAGAGCT+TGG 0.496464 3_1:-11433554 Msa0348650:CDS
GGTGCATACTCATCTCTAAC+CGG 0.496601 3_1:+11433033 None:intergenic
GAGAACCCAACAACCTAAAA+GGG 0.497618 3_1:+11432793 None:intergenic
ATCCTATCCTGGGCCGAGAA+AGG 0.498744 3_1:+11430650 None:intergenic
AAGCTTGAGACTTATCGAAA+TGG 0.503401 3_1:-11430890 Msa0348650:CDS
GGAAACATCAAATGATATGT+AGG 0.503498 3_1:-11432191 Msa0348650:intron
AATTTACTTGGTCAACGTGC+TGG 0.503613 3_1:-11432348 Msa0348650:CDS
AAAATCCGCGGTAAATGAAA+AGG 0.506447 3_1:+11430487 None:intergenic
GGATGATTTCCACGAAATGC+AGG 0.506772 3_1:-11431955 Msa0348650:CDS
TTAATTGGAGGCAGATATGT+TGG 0.514349 3_1:-11432402 Msa0348650:intron
TTTATAAGCCGGCCGCAGGT+TGG 0.515174 3_1:-11430515 Msa0348650:CDS
CTGGGAAGAGAGACGCCTAA+TGG 0.517830 3_1:-11429711 Msa0348650:CDS
TGCACCGGTCATATTTGCTC+AGG 0.519789 3_1:-11433016 Msa0348650:CDS
TTAAAGCCGTTGTGGTTGAT+GGG 0.520906 3_1:-11430388 Msa0348650:CDS
TGAAGCTGGCAAATTAGAGC+TGG 0.522160 3_1:-11431452 Msa0348650:CDS
GTAAATCGGAGGGTGGCTGC+AGG 0.522747 3_1:-11429627 Msa0348650:CDS
TCAAACACAAACCTGGTCAA+TGG 0.523516 3_1:+11433308 None:intergenic
GAAATTAGAACACCTATGAA+TGG 0.524054 3_1:-11431768 Msa0348650:CDS
TATAATCTCAAAACGCTAAG+TGG 0.524296 3_1:-11430833 Msa0348650:CDS
ACGTTGAAGTAAAGCTTCAA+TGG 0.524639 3_1:+11434312 None:intergenic
CACTCAGGGGCGGATGCATG+TGG 0.524886 3_1:-11428980 Msa0348650:CDS
TTGTTCATAAAATTCATTCG+AGG 0.525613 3_1:+11430715 None:intergenic
CTTTGATGTGGAGTCACTTG+TGG 0.526300 3_1:-11432373 Msa0348650:CDS
TCTAGAAATTATGGTGGTAC+CGG 0.530180 3_1:-11430593 Msa0348650:CDS
CTAGAGTTGAATCTTCAAAT+GGG 0.530753 3_1:+11434369 None:intergenic
AATGGAAAGAGAGGCTTCAC+CGG 0.534549 3_1:-11433052 Msa0348650:CDS
AAACCCTTCTGCCATTGACC+AGG 0.535215 3_1:-11433319 Msa0348650:intron
AGCCGATGTTGCCAAGTCAC+AGG 0.537666 3_1:-11431910 Msa0348650:intron
ATTCAAATGCCAGAAATGGA+TGG 0.537787 3_1:-11429501 Msa0348650:CDS
ATGGTCTGTGTCGAAGACAC+TGG 0.538586 3_1:-11430683 Msa0348650:CDS
CTGTATAGGAATAGGATACA+AGG 0.540979 3_1:+11433990 None:intergenic
AAACTTTATAAGCCGGCCGC+AGG 0.541024 3_1:-11430519 Msa0348650:CDS
TCTTGTAACTTAGAAGCCAA+AGG 0.541599 3_1:+11433603 None:intergenic
CTTGTAACTTAGAAGCCAAA+GGG 0.542757 3_1:+11433604 None:intergenic
ACTAATACTCAAACCAATGC+CGG 0.544383 3_1:+11430574 None:intergenic
TACTAAAGTGAGAAGGAAAG+AGG 0.545004 3_1:-11433454 Msa0348650:CDS
CTGTTCCCAAAACTTGCTGA+AGG 0.546763 3_1:+11429745 None:intergenic
TTGTTGGGTTCTCATCATCT+CGG 0.549046 3_1:-11432783 Msa0348650:CDS
ATAAGGCTGTTTCCTTGTGT+GGG 0.549996 3_1:-11430289 Msa0348650:CDS
AAACTAGTACAGAAAGAGAA+AGG 0.550741 3_1:-11434074 Msa0348650:five_prime_UTR
GAGCTCATTAAAGCGACCAC+AGG 0.552166 3_1:-11432702 Msa0348650:CDS
GAACAGAGTTGAGACCAGAT+TGG 0.554518 3_1:+11434012 None:intergenic
GACCGAGCGAAAATTGAAGC+TGG 0.556250 3_1:-11431466 Msa0348650:CDS
GAGAAGGATTCATGGGTTTG+TGG 0.557947 3_1:-11429951 Msa0348650:CDS
ATTGGAGGCAGATATGTTGG+AGG 0.558944 3_1:-11432399 Msa0348650:intron
AGAGTTGAGACCAGATTGGT+TGG 0.559613 3_1:+11434016 None:intergenic
AGTCTGAGCATAGTCACGTT+GGG 0.560336 3_1:+11431537 None:intergenic
GTAGCTAGAAGGATCATTTG+AGG 0.560581 3_1:+11429864 None:intergenic
GGATTCATGGGTTTGTGGAG+AGG 0.561266 3_1:-11429946 Msa0348650:CDS
AGGTGCTTCCAACCTGCGGC+CGG 0.562519 3_1:+11430507 None:intergenic
GACTGCTCAAGCATGTGGTA+AGG 0.562826 3_1:-11431518 Msa0348650:CDS
TTCAAATGCCAGAAATGGAT+GGG 0.564303 3_1:-11429500 Msa0348650:intron
GATACCATTTGAAGAGACTT+GGG 0.564437 3_1:-11430340 Msa0348650:CDS
GTTAGCAACTCTTTGTGCAT+AGG 0.564485 3_1:+11433122 None:intergenic
GAAAGTGCTGTCCAATTTGG+CGG 0.567496 3_1:+11432059 None:intergenic
ACAATTTGTCTGAATCTCCC+AGG 0.568802 3_1:+11431152 None:intergenic
AGGCATGAAAATCCTATCCT+GGG 0.569644 3_1:+11430640 None:intergenic
AAGGAAAAGTACCTGTGACT+TGG 0.570868 3_1:+11431899 None:intergenic
CACAAGTGACTCCACATCAA+AGG 0.571996 3_1:+11432374 None:intergenic
TATAAAGACAATGGAAAGAG+AGG 0.575171 3_1:-11433061 Msa0348650:CDS
GTTTGAGAAGCAGCATGGAG+TGG 0.575227 3_1:-11433085 Msa0348650:CDS
TAGAGGGCTTAAAGCCGTTG+TGG 0.575392 3_1:-11430396 Msa0348650:CDS
GTTTCCTGAGCAAATATGAC+CGG 0.576507 3_1:+11433012 None:intergenic
TTTATCATGATCAACACTCA+GGG 0.577056 3_1:-11428994 Msa0348650:CDS
TTGATGACAATGGAGTAAAT+CGG 0.578072 3_1:-11429641 Msa0348650:CDS
CGTTAAACAATGTTGTGTAG+TGG 0.579143 3_1:+11434464 None:intergenic
CTTGAGACTTATCGAAATGG+AGG 0.580908 3_1:-11430887 Msa0348650:CDS
TTCTTAGATTATGTAATGAG+AGG 0.580952 3_1:-11428746 Msa0348650:three_prime_UTR
TATGGCAACCAATACGAAGA+AGG 0.582214 3_1:-11432264 Msa0348650:CDS
CCACTGAGAGCTAGTATGGT+GGG 0.584057 3_1:-11429774 Msa0348650:CDS
TACCTGTGACTTGGCAACAT+CGG 0.584979 3_1:+11431908 None:intergenic
GGACTTCCATAGATATGAAG+AGG 0.585973 3_1:-11433720 Msa0348650:intron
CTTAAATATTCCAAAATCCG+CGG 0.588225 3_1:+11430475 None:intergenic
CAAACCTGGTCAATGGCAGA+AGG 0.590199 3_1:+11433315 None:intergenic
GCTTGGTCTGCTTCTACGCA+CGG 0.590241 3_1:-11431572 Msa0348650:CDS
AGCAAGCATCAAACTTGTGA+GGG 0.592861 3_1:+11429532 None:intergenic
TAATGAGAGCTAGAGCTACT+GGG 0.593885 3_1:-11432833 Msa0348650:CDS
GGAACAGGCAAGAGACAGCT+GGG 0.595337 3_1:-11429729 Msa0348650:CDS
TGGAGTGGTTATAAAGACAA+TGG 0.596726 3_1:-11433070 Msa0348650:CDS
ACTCTTCATCAGCAATTAGG+TGG 0.601724 3_1:+11430768 None:intergenic
GAGCAGTTTGAGAAGCAGCA+TGG 0.604333 3_1:-11433090 Msa0348650:CDS
ATGGAAAGTTGAAACAAGGA+TGG 0.605809 3_1:+11433350 None:intergenic
GCAGATGTGGAGTGTGCCGA+TGG 0.607272 3_1:-11429585 Msa0348650:CDS
CAACTGGACTGGAAACAGAA+TGG 0.610211 3_1:-11429903 Msa0348650:CDS
CACCGTATCACTAAAACCTG+TGG 0.611005 3_1:+11429806 None:intergenic
GGATGGCAAGAGCATGAACA+TGG 0.613468 3_1:+11433367 None:intergenic
AAGCAAGCATCAAACTTGTG+AGG 0.615739 3_1:+11429531 None:intergenic
CAGTCTGAGCATAGTCACGT+TGG 0.615929 3_1:+11431536 None:intergenic
AAGTAGCGGCCTTTCGAAAG+CGG 0.618779 3_1:+11433155 None:intergenic
TTAAGCCCTCTAAAACTGGA+TGG 0.620083 3_1:+11430407 None:intergenic
TCAGAGAAGTCTAGACACAA+AGG 0.620996 3_1:-11431376 Msa0348650:CDS
TGGTTGCCATACATGATTAG+GGG 0.623830 3_1:+11432276 None:intergenic
GGAGCTAAAAGTTCAAGCAG+AGG 0.625623 3_1:-11431934 Msa0348650:CDS
TGTTGATGAACGCAACAACT+GGG 0.628102 3_1:-11430801 Msa0348650:CDS
TGTTGGAGGATCCTTTGATG+TGG 0.629395 3_1:-11432385 Msa0348650:CDS
AAAATGGTGCTTCCAGCACA+GGG 0.629838 3_1:-11430265 Msa0348650:intron
GTCTTCGACACAGACCATCA+AGG 0.633984 3_1:+11430688 None:intergenic
TTGAGACTTATCGAAATGGA+GGG 0.635447 3_1:-11430886 Msa0348650:CDS
CGGCTAGGACCGCTTTCGAA+AGG 0.636060 3_1:-11433164 Msa0348650:CDS
TTTGTACAGGTATCACCAGA+AGG 0.636717 3_1:-11432084 Msa0348650:intron
GACCACCCATTAGTTCAACT+AGG 0.637764 3_1:+11430546 None:intergenic
TGGCAAATTAGAGCTGGAAG+CGG 0.637994 3_1:-11431446 Msa0348650:CDS
AAACCTGGTCAATGGCAGAA+GGG 0.638356 3_1:+11433316 None:intergenic
AGCTCATTAAAGCGACCACA+GGG 0.638768 3_1:-11432701 Msa0348650:intron
ACTCAGGGGCGGATGCATGT+GGG 0.641523 3_1:-11428979 Msa0348650:CDS
TTGTGCGTACTAAAGTGAGA+AGG 0.641923 3_1:-11433461 Msa0348650:CDS
GGGTTCTCATCATCTCGGTG+TGG 0.642737 3_1:-11432778 Msa0348650:CDS
GAATCATATTGTCAAAGTAG+AGG 0.643202 3_1:-11431976 Msa0348650:CDS
ATACTGCAGTTCACTGAGCG+AGG 0.645750 3_1:-11430968 Msa0348650:intron
TATTGATATGATGTCTGGAG+AGG 0.648092 3_1:-11432971 Msa0348650:intron
GGTTAGAGATGAGTATGCAC+CGG 0.649698 3_1:-11433031 Msa0348650:CDS
GCCACTGAGAGCTAGTATGG+TGG 0.649946 3_1:-11429775 Msa0348650:CDS
GCTCAGACTGCTCAAGCATG+TGG 0.653633 3_1:-11431523 Msa0348650:CDS
ATGACAATGGAGTAAATCGG+AGG 0.655541 3_1:-11429638 Msa0348650:CDS
AATAATGGAAAGTTGAAACA+AGG 0.658333 3_1:+11433346 None:intergenic
TGCCTAGTTGAACTAATGGG+TGG 0.659529 3_1:-11430548 Msa0348650:CDS
GAAGTTGTGCATGCATCTAG+CGG 0.666517 3_1:-11430857 Msa0348650:CDS
TAAGAAGAATCCAATAACTG+AGG 0.666691 3_1:-11430456 Msa0348650:CDS
TGACAATGGAGTAAATCGGA+GGG 0.667147 3_1:-11429637 Msa0348650:CDS
ATATTGTTATGGGAGATCCT+GGG 0.667347 3_1:-11431169 Msa0348650:CDS
ACATCATATCAATAGACTCA+AGG 0.667566 3_1:+11432980 None:intergenic
CTAAGTTACAAGAACAAACG+GGG 0.670139 3_1:-11433593 Msa0348650:CDS
GTAACTTAGAAGCCAAAGGG+TGG 0.674237 3_1:+11433607 None:intergenic
GATGTGGAGTGTGCCGATGG+CGG 0.678771 3_1:-11429582 Msa0348650:CDS
CAATGGAGTAAATCGGAGGG+TGG 0.680868 3_1:-11429634 Msa0348650:CDS
AAGGCCGCTACTTAGTGGAG+TGG 0.681896 3_1:-11433145 Msa0348650:CDS
GAAAAGGTGCTTCCAACCTG+CGG 0.683040 3_1:+11430503 None:intergenic
TCGACTTCTAGAAATTATGG+TGG 0.683726 3_1:-11430599 Msa0348650:CDS
TCATGATCAACACTCAGGGG+CGG 0.683801 3_1:-11428990 Msa0348650:CDS
AGGTTTCCCATCAACCACAA+CGG 0.697501 3_1:+11430382 None:intergenic
AAATAGTTCAAAGAAGACCA+AGG 0.697534 3_1:-11434393 Msa0348650:five_prime_UTR
TTATCATGATCAACACTCAG+GGG 0.705845 3_1:-11428993 Msa0348650:CDS
CCCACCATACTAGCTCTCAG+TGG 0.729319 3_1:+11429774 None:intergenic
TAGGCCACTCCACTAAGTAG+CGG 0.749192 3_1:+11433141 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+CGG + chr3_1:11431928-11431947 None:intergenic 0.0%
!!! GAATTTTTAATTCATTATAT+TGG - chr3_1:11429303-11429322 Msa0348650:intron 10.0%
!!! GCTTTTTTTTTTTTTTTTTT+TGG - chr3_1:11430249-11430268 Msa0348650:intron 10.0%
!!! TTTTTTTTTTTTTTTTTTGG+TGG - chr3_1:11430252-11430271 Msa0348650:intron 10.0%
!! TTCATAATAATATCTTAATT+TGG - chr3_1:11431867-11431886 Msa0348650:intron 10.0%
!!! CGATTATTAATTTTTTTTTT+TGG - chr3_1:11433705-11433724 Msa0348650:five_prime_UTR 10.0%
!! GAAATGTTAAATAAATTAAT+TGG + chr3_1:11434388-11434407 None:intergenic 10.0%
!!! AAAAAGATTCTAAAAACAAA+AGG + chr3_1:11430518-11430537 None:intergenic 15.0%
!!! TGATTAATGAACTTTTTAAT+TGG - chr3_1:11430750-11430769 Msa0348650:CDS 15.0%
!! AATGAACTTTAACAAATATA+TGG + chr3_1:11432225-11432244 None:intergenic 15.0%
!! ATTAACTGAGTTAAAATATT+TGG - chr3_1:11433156-11433175 Msa0348650:CDS 15.0%
!!! CAAAATCATATTTCTAAAAT+CGG - chr3_1:11434044-11434063 Msa0348650:five_prime_UTR 15.0%
!!! GTAATAATTGTTTTTTTTGA+AGG - chr3_1:11434488-11434507 Msa0348650:five_prime_UTR 15.0%
!! AAAAAAACATTGTTTAACGT+TGG - chr3_1:11428742-11428761 Msa0348650:three_prime_UTR 20.0%
!!! ACTTTTTTATATATAGGAAG+TGG + chr3_1:11429399-11429418 None:intergenic 20.0%
!!! GCACAAACTTTTTTATATAT+AGG + chr3_1:11429405-11429424 None:intergenic 20.0%
!!! ACTGTTAATTGAGTATTTTT+TGG - chr3_1:11429425-11429444 Msa0348650:intron 20.0%
!!! CTGTTAATTGAGTATTTTTT+GGG - chr3_1:11429426-11429445 Msa0348650:intron 20.0%
!!! TTCTCAAATTAATGTTTCTA+TGG - chr3_1:11429637-11429656 Msa0348650:CDS 20.0%
!! AAAAAAAAAAAAAAAAGCGG+TGG + chr3_1:11430247-11430266 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTTGGTGG+AGG - chr3_1:11430255-11430274 Msa0348650:intron 20.0%
!! TGTTTCATATGAGTAATTAA+AGG - chr3_1:11430543-11430562 Msa0348650:CDS 20.0%
!! GTGTTTAGTATAAAAATCTT+AGG - chr3_1:11430575-11430594 Msa0348650:CDS 20.0%
!! AACAAAATATAACCAAATAC+AGG + chr3_1:11430709-11430728 None:intergenic 20.0%
!!! TTAATGAACTTTTTAATTGG+AGG - chr3_1:11430753-11430772 Msa0348650:CDS 20.0%
!!! TTAGTTGGTTACATTTTATA+TGG - chr3_1:11431162-11431181 Msa0348650:CDS 20.0%
!! ATTATTAATGAGAAAGTGAA+AGG + chr3_1:11431540-11431559 None:intergenic 20.0%
!! TATTATTATGAAACTCGTAT+TGG + chr3_1:11431859-11431878 None:intergenic 20.0%
!! TTAGTAATGCAAATAACTTT+AGG + chr3_1:11432096-11432115 None:intergenic 20.0%
!!! ATTTTTAGTGAACTAATGTT+AGG - chr3_1:11432964-11432983 Msa0348650:intron 20.0%
!! TTCTCAACAAAAATAATATC+AGG + chr3_1:11433201-11433220 None:intergenic 20.0%
!!! TGATATTATTTTTGTTGAGA+AGG - chr3_1:11433200-11433219 Msa0348650:intron 20.0%
!!! TCAAATTATTTTGTGCATTT+TGG - chr3_1:11433894-11433913 Msa0348650:intron 20.0%
! TTCTAAGTTACAAGAACAAA+CGG - chr3_1:11429572-11429591 Msa0348650:CDS 25.0%
!! AATAATGGAAAGTTGAAACA+AGG + chr3_1:11429824-11429843 None:intergenic 25.0%
! TATGAGTAATTAAAGGATGA+AGG - chr3_1:11430550-11430569 Msa0348650:CDS 25.0%
!! AGAAAAATGTTTCTGTTACA+AGG - chr3_1:11430683-11430702 Msa0348650:CDS 25.0%
!! TTATGATCAAACTTTTGTAC+AGG - chr3_1:11431070-11431089 Msa0348650:intron 25.0%
! ATAGATGAATCACAAAGAAT+AGG + chr3_1:11431143-11431162 None:intergenic 25.0%
! TTTGTGATTCATCTATTAGT+TGG - chr3_1:11431147-11431166 Msa0348650:CDS 25.0%
!!! GAAAGCATATGTTACATTTT+AGG + chr3_1:11431514-11431533 None:intergenic 25.0%
! AAACAAAACTCTATGATTGT+AGG - chr3_1:11431569-11431588 Msa0348650:CDS 25.0%
! TTAGATCATCAAATAAAGAG+AGG + chr3_1:11431896-11431915 None:intergenic 25.0%
! TAAAGTTCCAGATATTGTTA+TGG - chr3_1:11431987-11432006 Msa0348650:CDS 25.0%
! AAAGTTCCAGATATTGTTAT+GGG - chr3_1:11431988-11432007 Msa0348650:CDS 25.0%
! CAAATTGTAACAAATCTTGT+TGG - chr3_1:11432030-11432049 Msa0348650:CDS 25.0%
! TACTAATATGCATGTTATGT+TGG - chr3_1:11432110-11432129 Msa0348650:intron 25.0%
! TTGTTCATAAAATTCATTCG+AGG + chr3_1:11432455-11432474 None:intergenic 25.0%
! GTCAAATAAACTTTATAAGC+CGG - chr3_1:11432641-11432660 Msa0348650:intron 25.0%
! GCAATGCATTAATTACAAAA+AGG + chr3_1:11432943-11432962 None:intergenic 25.0%
! TGAGTTAAAATATTTGGTTG+TGG - chr3_1:11433162-11433181 Msa0348650:CDS 25.0%
! TATCATTGAATTTATCAGCA+AGG + chr3_1:11433822-11433841 None:intergenic 25.0%
!! ATTTTGTGCATTTTGGATTT+TGG - chr3_1:11433901-11433920 Msa0348650:intron 25.0%
!! GGATATAAATCACATGTTTT+GGG + chr3_1:11434366-11434385 None:intergenic 25.0%
! TTCTTAGATTATGTAATGAG+AGG - chr3_1:11434421-11434440 Msa0348650:intron 25.0%
! ATTATGTAATGAGAGGAATT+TGG - chr3_1:11434428-11434447 Msa0348650:intron 25.0%
! TTGCTCTCTTATTATTGTTT+AGG + chr3_1:11434466-11434485 None:intergenic 25.0%
AAATAGTTCAAAGAAGACCA+AGG - chr3_1:11428774-11428793 Msa0348650:three_prime_UTR 30.0%
CTAGAGTTGAATCTTCAAAT+GGG + chr3_1:11428801-11428820 None:intergenic 30.0%
! TCTAGAGTTGAATCTTCAAA+TGG + chr3_1:11428802-11428821 None:intergenic 30.0%
! ACTTGAGGAGAAAATTTTGT+TGG - chr3_1:11428899-11428918 Msa0348650:three_prime_UTR 30.0%
! CTTGAGGAGAAAATTTTGTT+GGG - chr3_1:11428900-11428919 Msa0348650:three_prime_UTR 30.0%
AAACTAGTACAGAAAGAGAA+AGG - chr3_1:11429093-11429112 Msa0348650:intron 30.0%
ATGTTTACCTGTATAGGAAT+AGG + chr3_1:11429188-11429207 None:intergenic 30.0%
GAAACAATGTTTACCTGTAT+AGG + chr3_1:11429194-11429213 None:intergenic 30.0%
AAAGCAAAGAGTAAGTAAGA+GGG + chr3_1:11429225-11429244 None:intergenic 30.0%
AAAAGCAAAGAGTAAGTAAG+AGG + chr3_1:11429226-11429245 None:intergenic 30.0%
GAAAGAGATTTAGTGTTAGT+TGG - chr3_1:11429492-11429511 Msa0348650:intron 30.0%
TCTAAGTTACAAGAACAAAC+GGG - chr3_1:11429573-11429592 Msa0348650:CDS 30.0%
TTGTATCATCTACAGCAAAA+TGG - chr3_1:11429683-11429702 Msa0348650:CDS 30.0%
AAAACTTTCAAACACAAACC+TGG + chr3_1:11429869-11429888 None:intergenic 30.0%
!! AAGTTTTGATCATTCTGTGT+TGG - chr3_1:11429882-11429901 Msa0348650:CDS 30.0%
AATCATCAAATAAGCATCAG+AGG + chr3_1:11429955-11429974 None:intergenic 30.0%
! TTATTTGATGATTTCCCTTC+AGG - chr3_1:11429962-11429981 Msa0348650:CDS 30.0%
! GGAAACTTTTGCAGAATATA+CGG - chr3_1:11429983-11430002 Msa0348650:intron 30.0%
TATAAAGACAATGGAAAGAG+AGG - chr3_1:11430106-11430125 Msa0348650:intron 30.0%
ACATCATATCAATAGACTCA+AGG + chr3_1:11430190-11430209 None:intergenic 30.0%
AAAAAAAAAAAGCGGTGGAA+TGG + chr3_1:11430242-11430261 None:intergenic 30.0%
!! ATTTCTCATTTTTGCAATGC+AGG - chr3_1:11430296-11430315 Msa0348650:CDS 30.0%
TCACTTGTGGAAAATTTACT+TGG - chr3_1:11430807-11430826 Msa0348650:CDS 30.0%
CAAAATCAAGCTTACTTTCA+TGG + chr3_1:11430944-11430963 None:intergenic 30.0%
! CATGAAAGTAAGCTTGATTT+TGG - chr3_1:11430942-11430961 Msa0348650:CDS 30.0%
ATCATTTGATGTTTCCTGTA+TGG + chr3_1:11430972-11430991 None:intergenic 30.0%
GGAAACATCAAATGATATGT+AGG - chr3_1:11430976-11430995 Msa0348650:intron 30.0%
ACATCAAATGATATGTAGGT+AGG - chr3_1:11430980-11430999 Msa0348650:intron 30.0%
! CTACTGTACATTACATTTTC+TGG - chr3_1:11431012-11431031 Msa0348650:intron 30.0%
! GTTACATTTTATATGGTGCT+GGG - chr3_1:11431169-11431188 Msa0348650:CDS 30.0%
GAATCATATTGTCAAAGTAG+AGG - chr3_1:11431191-11431210 Msa0348650:CDS 30.0%
AGTTATTGTTGCGTAATCAA+AGG + chr3_1:11431329-11431348 None:intergenic 30.0%
GAAATTAGAACACCTATGAA+TGG - chr3_1:11431399-11431418 Msa0348650:CDS 30.0%
TTACCTAAAATGCCATTCAT+AGG + chr3_1:11431414-11431433 None:intergenic 30.0%
! TTCATTTTACCTTTCTTAGC+TGG - chr3_1:11431948-11431967 Msa0348650:CDS 30.0%
TATAATCTCAAAACGCTAAG+TGG - chr3_1:11432334-11432353 Msa0348650:CDS 30.0%
AAAACTCTTCATCAGCAATT+AGG + chr3_1:11432405-11432424 None:intergenic 30.0%
TAAATGCCTAGTTGAACTAA+TGG - chr3_1:11432615-11432634 Msa0348650:intron 30.0%
AAATGCCTAGTTGAACTAAT+GGG - chr3_1:11432616-11432635 Msa0348650:intron 30.0%
CTTAAATATTCCAAAATCCG+CGG + chr3_1:11432695-11432714 None:intergenic 30.0%
TAAGAAGAATCCAATAACTG+AGG - chr3_1:11432711-11432730 Msa0348650:CDS 30.0%
TTAAAATATTTGGTTGTGGC+AGG - chr3_1:11433166-11433185 Msa0348650:CDS 30.0%
CAACAAAAATAATATCAGGC+TGG + chr3_1:11433197-11433216 None:intergenic 30.0%
! TTTTTGTTGAGAAGGATTCA+TGG - chr3_1:11433208-11433227 Msa0348650:intron 30.0%
! TTTTGTTGAGAAGGATTCAT+GGG - chr3_1:11433209-11433228 Msa0348650:intron 30.0%
TACTAATATTCGTAGCTAGA+AGG + chr3_1:11433317-11433336 None:intergenic 30.0%
TTTGATAAAGCTAAATCCAC+AGG - chr3_1:11433345-11433364 Msa0348650:CDS 30.0%
! AAATTTTCTTTCCGAACAGA+AGG + chr3_1:11433500-11433519 None:intergenic 30.0%
! GTTCGGAAAGAAAATTTTAG+TGG - chr3_1:11433503-11433522 Msa0348650:CDS 30.0%
!!! ATTTTAGTGGTTGATGACAA+TGG - chr3_1:11433516-11433535 Msa0348650:CDS 30.0%
! TTGATGACAATGGAGTAAAT+CGG - chr3_1:11433526-11433545 Msa0348650:CDS 30.0%
CACTTCAACTGTTGAAATTT+GGG + chr3_1:11434290-11434309 None:intergenic 30.0%
! ATACAAGGTTAGTTACACAT+TGG + chr3_1:11434083-11434102 None:intergenic 30.0%
TTCATTTGCAATTTGTGTAG+TGG - chr3_1:11434139-11434158 Msa0348650:five_prime_UTR 30.0%
! TTTTATCATGATCAACACTC+AGG - chr3_1:11434172-11434191 Msa0348650:five_prime_UTR 30.0%
TTTATCATGATCAACACTCA+GGG - chr3_1:11434173-11434192 Msa0348650:five_prime_UTR 30.0%
CACTTCAACTGTTGAAATTT+GGG - chr3_1:11434290-11434309 Msa0348650:five_prime_UTR 30.0%
ATCCTCTACAGAAGAAAATA+AGG + chr3_1:11434324-11434343 None:intergenic 30.0%
! GGGATATAAATCACATGTTT+TGG + chr3_1:11434367-11434386 None:intergenic 30.0%
CGTTAAACAATGTTGTGTAG+TGG + chr3_1:11428706-11428725 None:intergenic 35.0%
ACGTTGAAGTAAAGCTTCAA+TGG + chr3_1:11428858-11428877 None:intergenic 35.0%
TCAACGTGCTAGTTGAAAAA+AGG - chr3_1:11428871-11428890 Msa0348650:three_prime_UTR 35.0%
!! TGAAAAAAGGTGCTAACTTG+AGG - chr3_1:11428884-11428903 Msa0348650:three_prime_UTR 35.0%
CTGTATAGGAATAGGATACA+AGG + chr3_1:11429180-11429199 None:intergenic 35.0%
CTTGTATCCTATTCCTATAC+AGG - chr3_1:11429178-11429197 Msa0348650:intron 35.0%
GAATTCTAATCATGCTCTCT+AGG + chr3_1:11429279-11429298 None:intergenic 35.0%
! TTATATTGGCTGTTGAGAGA+AGG - chr3_1:11429317-11429336 Msa0348650:intron 35.0%
! TATATTGGCTGTTGAGAGAA+GGG - chr3_1:11429318-11429337 Msa0348650:intron 35.0%
GTAGCTTACTTTGCTTAAGA+TGG + chr3_1:11429377-11429396 None:intergenic 35.0%
TGAACTCCTCTTCATATCTA+TGG + chr3_1:11429456-11429475 None:intergenic 35.0%
!! GTGTTAGTTGGTGTTGTAAT+TGG - chr3_1:11429504-11429523 Msa0348650:CDS 35.0%
CTTGTAACTTAGAAGCCAAA+GGG + chr3_1:11429566-11429585 None:intergenic 35.0%
TCTTGTAACTTAGAAGCCAA+AGG + chr3_1:11429567-11429586 None:intergenic 35.0%
CTAAGTTACAAGAACAAACG+GGG - chr3_1:11429574-11429593 Msa0348650:CDS 35.0%
GTTTCTATGGATTCTTCTGA+TGG - chr3_1:11429650-11429669 Msa0348650:CDS 35.0%
TACTAAAGTGAGAAGGAAAG+AGG - chr3_1:11429713-11429732 Msa0348650:CDS 35.0%
ATGGAAAGTTGAAACAAGGA+TGG + chr3_1:11429820-11429839 None:intergenic 35.0%
CAGAAGGGTTTCTGTAATAA+TGG + chr3_1:11429839-11429858 None:intergenic 35.0%
AAGCATCAGAGGATACATAA+AGG + chr3_1:11429944-11429963 None:intergenic 35.0%
TTCTGCAAAAGTTTCCTGAA+GGG + chr3_1:11429979-11429998 None:intergenic 35.0%
ATTCTGCAAAAGTTTCCTGA+AGG + chr3_1:11429980-11429999 None:intergenic 35.0%
TGGAGTGGTTATAAAGACAA+TGG - chr3_1:11430097-11430116 Msa0348650:intron 35.0%
GAGTCTATTGATATGATGTC+TGG - chr3_1:11430191-11430210 Msa0348650:intron 35.0%
TATTGATATGATGTCTGGAG+AGG - chr3_1:11430196-11430215 Msa0348650:intron 35.0%
TAATGAGCTCTTCTGTTGTT+GGG + chr3_1:11430455-11430474 None:intergenic 35.0%
TTAATGAGCTCTTCTGTTGT+TGG + chr3_1:11430456-11430475 None:intergenic 35.0%
TGAAATAAGGATATACCCTG+TGG + chr3_1:11430484-11430503 None:intergenic 35.0%
! AACACTAAAAGTGGCATTGA+CGG + chr3_1:11430635-11430654 None:intergenic 35.0%
! TGTGTCGATAACACTAAAAG+TGG + chr3_1:11430644-11430663 None:intergenic 35.0%
TTAATTGGAGGCAGATATGT+TGG - chr3_1:11430765-11430784 Msa0348650:CDS 35.0%
TTGGTTGCCATACATGATTA+GGG + chr3_1:11430895-11430914 None:intergenic 35.0%
ATTGGTTGCCATACATGATT+AGG + chr3_1:11430896-11430915 None:intergenic 35.0%
AAACATCACCTTCTTCGTAT+TGG + chr3_1:11430914-11430933 None:intergenic 35.0%
!! TTGATTTTGGAGATCCATAC+AGG - chr3_1:11430955-11430974 Msa0348650:CDS 35.0%
!!! ACATTTTCTGGAACTGACTT+TGG - chr3_1:11431024-11431043 Msa0348650:intron 35.0%
!!! CATTTTCTGGAACTGACTTT+GGG - chr3_1:11431025-11431044 Msa0348650:intron 35.0%
! GGTTACATTTTATATGGTGC+TGG - chr3_1:11431168-11431187 Msa0348650:CDS 35.0%
! ACACCTATGAATGGCATTTT+AGG - chr3_1:11431408-11431427 Msa0348650:CDS 35.0%
TCTATGATTGTAGGAATGCT+TGG - chr3_1:11431578-11431597 Msa0348650:CDS 35.0%
AGTATGGAACGAATGTCAAA+TGG + chr3_1:11431749-11431768 None:intergenic 35.0%
! ACTTCTCTGAAAAAAGAGAG+AGG + chr3_1:11431781-11431800 None:intergenic 35.0%
ATATTGTTATGGGAGATCCT+GGG - chr3_1:11431998-11432017 Msa0348650:CDS 35.0%
AAGCTTGAGACTTATCGAAA+TGG - chr3_1:11432277-11432296 Msa0348650:CDS 35.0%
TTGAGACTTATCGAAATGGA+GGG - chr3_1:11432281-11432300 Msa0348650:CDS 35.0%
CGATGCTTCAACTAAAAAAG+TGG - chr3_1:11432429-11432448 Msa0348650:intron 35.0%
TTATGAACAAGTCACCTTGA+TGG - chr3_1:11432465-11432484 Msa0348650:intron 35.0%
TGGAATTGGAATTCCTTTCT+CGG - chr3_1:11432504-11432523 Msa0348650:intron 35.0%
! GATTTTCATGCCTTTTGTTC+AGG - chr3_1:11432537-11432556 Msa0348650:intron 35.0%
! AGCTCGACTTCTAGAAATTA+TGG - chr3_1:11432565-11432584 Msa0348650:intron 35.0%
! TCGACTTCTAGAAATTATGG+TGG - chr3_1:11432568-11432587 Msa0348650:intron 35.0%
TCTAGAAATTATGGTGGTAC+CGG - chr3_1:11432574-11432593 Msa0348650:intron 35.0%
ACTAATACTCAAACCAATGC+CGG + chr3_1:11432596-11432615 None:intergenic 35.0%
AAAATCCGCGGTAAATGAAA+AGG + chr3_1:11432683-11432702 None:intergenic 35.0%
! TTTTCATTTACCGCGGATTT+TGG - chr3_1:11432682-11432701 Msa0348650:intron 35.0%
!!! ATCTACCATCCAGTTTTAGA+GGG - chr3_1:11432755-11432774 Msa0348650:CDS 35.0%
AGATACCATTTGAAGAGACT+TGG - chr3_1:11432826-11432845 Msa0348650:CDS 35.0%
GATACCATTTGAAGAGACTT+GGG - chr3_1:11432827-11432846 Msa0348650:CDS 35.0%
GATTCATGTGTGACTTTAGA+TGG + chr3_1:11433013-11433032 None:intergenic 35.0%
AGTCACACATGAATCATGAT+AGG - chr3_1:11433018-11433037 Msa0348650:CDS 35.0%
! TTGCATTTGTTCTTGTTGTG+TGG - chr3_1:11433117-11433136 Msa0348650:CDS 35.0%
!! ATCCACAGGTTTTAGTGATA+CGG - chr3_1:11433359-11433378 Msa0348650:CDS 35.0%
GGATATTCAAATGCCAGAAA+TGG - chr3_1:11433662-11433681 Msa0348650:five_prime_UTR 35.0%
ATTCAAATGCCAGAAATGGA+TGG - chr3_1:11433666-11433685 Msa0348650:five_prime_UTR 35.0%
TTCAAATGCCAGAAATGGAT+GGG - chr3_1:11433667-11433686 Msa0348650:five_prime_UTR 35.0%
TAGCGAACATGCACAAAATA+AGG - chr3_1:11433957-11433976 Msa0348650:intron 35.0%
CCACTTCAACTGTTGAAATT+TGG + chr3_1:11434289-11434308 None:intergenic 35.0%
CCAAATTTCAACAGTTGAAG+TGG - chr3_1:11433989-11434008 Msa0348650:intron 35.0%
! TACACATTGGTCGATTAGTT+TGG + chr3_1:11434070-11434089 None:intergenic 35.0%
TTATCATGATCAACACTCAG+GGG - chr3_1:11434174-11434193 Msa0348650:five_prime_UTR 35.0%
CCAAATTTCAACAGTTGAAG+TGG + chr3_1:11433989-11434008 None:intergenic 35.0%
CCACTTCAACTGTTGAAATT+TGG - chr3_1:11434289-11434308 Msa0348650:five_prime_UTR 35.0%
!!! GTCCTTATTTTCTTCTGTAG+AGG - chr3_1:11434319-11434338 Msa0348650:five_prime_UTR 35.0%
TTCTTCTGTAGAGGATGAAT+AGG - chr3_1:11434328-11434347 Msa0348650:five_prime_UTR 35.0%
TGAATCTTCAAATGGGTCCT+TGG + chr3_1:11428794-11428813 None:intergenic 40.0%
AGAGTGTGATGTGAAGTAGA+AGG - chr3_1:11428949-11428968 Msa0348650:CDS 40.0%
GAGTGTGATGTGAAGTAGAA+GGG - chr3_1:11428950-11428969 Msa0348650:CDS 40.0%
GTTTGTCTTTGAGCAAAGAC+TGG - chr3_1:11429246-11429265 Msa0348650:intron 40.0%
GGACTTCCATAGATATGAAG+AGG - chr3_1:11429447-11429466 Msa0348650:intron 40.0%
GAAGAGGAGTTCAGAGAAAT+AGG - chr3_1:11429463-11429482 Msa0348650:intron 40.0%
TCATTCAAGCACATAGAGCT+TGG - chr3_1:11429613-11429632 Msa0348650:CDS 40.0%
TTGTGCGTACTAAAGTGAGA+AGG - chr3_1:11429706-11429725 Msa0348650:CDS 40.0%
! AGTGAGAAGGAAAGAGGTTT+TGG - chr3_1:11429719-11429738 Msa0348650:CDS 40.0%
! GTGAGAAGGAAAGAGGTTTT+GGG - chr3_1:11429720-11429739 Msa0348650:CDS 40.0%
GGTTGACAGTAACACTGAAT+TGG + chr3_1:11429782-11429801 None:intergenic 40.0%
TCAAACACAAACCTGGTCAA+TGG + chr3_1:11429862-11429881 None:intergenic 40.0%
! CTTTTGCAGAATATACGGCT+AGG - chr3_1:11429988-11430007 Msa0348650:intron 40.0%
GTTAGCAACTCTTTGTGCAT+AGG + chr3_1:11430048-11430067 None:intergenic 40.0%
GTTTCCTGAGCAAATATGAC+CGG + chr3_1:11430158-11430177 None:intergenic 40.0%
!! TCTCATTTTTGCAATGCAGG+AGG - chr3_1:11430299-11430318 Msa0348650:CDS 40.0%
ATAATGAGAGCTAGAGCTAC+TGG - chr3_1:11430333-11430352 Msa0348650:CDS 40.0%
TAATGAGAGCTAGAGCTACT+GGG - chr3_1:11430334-11430353 Msa0348650:CDS 40.0%
!!! ACTAGCCCTTTTAGGTTGTT+GGG - chr3_1:11430369-11430388 Msa0348650:CDS 40.0%
GAGAACCCAACAACCTAAAA+GGG + chr3_1:11430377-11430396 None:intergenic 40.0%
TGAGAACCCAACAACCTAAA+AGG + chr3_1:11430378-11430397 None:intergenic 40.0%
TTGTTGGGTTCTCATCATCT+CGG - chr3_1:11430384-11430403 Msa0348650:CDS 40.0%
GGGAGCTTAGATTTGTAAAC+AGG + chr3_1:11430426-11430445 None:intergenic 40.0%
GGCTGACAGTTAGTGAAATA+AGG + chr3_1:11430497-11430516 None:intergenic 40.0%
TCTGTTACAAGGCCTGTATT+TGG - chr3_1:11430694-11430713 Msa0348650:CDS 40.0%
AATTTACTTGGTCAACGTGC+TGG - chr3_1:11430819-11430838 Msa0348650:CDS 40.0%
! TGCTGGTCATCAAGCAATTT+TGG - chr3_1:11430836-11430855 Msa0348650:CDS 40.0%
ACTGATCCCCTAATCATGTA+TGG - chr3_1:11430885-11430904 Msa0348650:CDS 40.0%
TGGTTGCCATACATGATTAG+GGG + chr3_1:11430894-11430913 None:intergenic 40.0%
TATGGCAACCAATACGAAGA+AGG - chr3_1:11430903-11430922 Msa0348650:CDS 40.0%
TTTGTACAGGTATCACCAGA+AGG - chr3_1:11431083-11431102 Msa0348650:intron 40.0%
!! GTAGAAAGTGCTGTCCAATT+TGG + chr3_1:11431114-11431133 None:intergenic 40.0%
!! AAGGAAAAGTACCTGTGACT+TGG + chr3_1:11431271-11431290 None:intergenic 40.0%
! ACTTTTCCTTGACATGTCGT+TGG - chr3_1:11431281-11431300 Msa0348650:intron 40.0%
TCAGAGAAGTCTAGACACAA+AGG - chr3_1:11431791-11431810 Msa0348650:CDS 40.0%
GTCTAGACACAAAGGTTTAG+AGG - chr3_1:11431799-11431818 Msa0348650:intron 40.0%
CGTTGCTAAACCTATTGTGA+AGG - chr3_1:11431833-11431852 Msa0348650:intron 40.0%
GGATCTCCCATAACAATATC+TGG + chr3_1:11431997-11432016 None:intergenic 40.0%
GATATTGTTATGGGAGATCC+TGG - chr3_1:11431997-11432016 Msa0348650:CDS 40.0%
ACAATTTGTCTGAATCTCCC+AGG + chr3_1:11432018-11432037 None:intergenic 40.0%
GGCAACTCTGTTAAAGTAAG+TGG - chr3_1:11432051-11432070 Msa0348650:CDS 40.0%
! TCAAGCTTTCCATTTGTTGC+GGG + chr3_1:11432265-11432284 None:intergenic 40.0%
! CTCAAGCTTTCCATTTGTTG+CGG + chr3_1:11432266-11432285 None:intergenic 40.0%
CTTGAGACTTATCGAAATGG+AGG - chr3_1:11432280-11432299 Msa0348650:CDS 40.0%
! TGTTGATGAACGCAACAACT+GGG - chr3_1:11432366-11432385 Msa0348650:CDS 40.0%
ACTCTTCATCAGCAATTAGG+TGG + chr3_1:11432402-11432421 None:intergenic 40.0%
AGGCATGAAAATCCTATCCT+GGG + chr3_1:11432530-11432549 None:intergenic 40.0%
AAGGCATGAAAATCCTATCC+TGG + chr3_1:11432531-11432550 None:intergenic 40.0%
! AAGCACCTTTTCATTTACCG+CGG - chr3_1:11432675-11432694 Msa0348650:intron 40.0%
TCCAATAACTGAGGTGAAGA+AGG - chr3_1:11432720-11432739 Msa0348650:CDS 40.0%
ACCTTCTTCACCTCAGTTAT+TGG + chr3_1:11432724-11432743 None:intergenic 40.0%
!! GATCTACCATCCAGTTTTAG+AGG - chr3_1:11432754-11432773 Msa0348650:CDS 40.0%
!! TTAAGCCCTCTAAAACTGGA+TGG + chr3_1:11432763-11432782 None:intergenic 40.0%
TTAAAGCCGTTGTGGTTGAT+GGG - chr3_1:11432779-11432798 Msa0348650:CDS 40.0%
CTATCCCAAGTCTCTTCAAA+TGG + chr3_1:11432834-11432853 None:intergenic 40.0%
AGTCGCAAATGCCATCAATA+AGG - chr3_1:11432861-11432880 Msa0348650:intron 40.0%
!! CAAGGAAACAGCCTTATTGA+TGG + chr3_1:11432875-11432894 None:intergenic 40.0%
! AATAAGGCTGTTTCCTTGTG+TGG - chr3_1:11432877-11432896 Msa0348650:intron 40.0%
! ATAAGGCTGTTTCCTTGTGT+GGG - chr3_1:11432878-11432897 Msa0348650:intron 40.0%
GTTTCCTTGTGTGGGAAAAA+TGG - chr3_1:11432886-11432905 Msa0348650:intron 40.0%
ATTAAAAACTTGCCCTGTGC+TGG + chr3_1:11432917-11432936 None:intergenic 40.0%
GTAGCTAGAAGGATCATTTG+AGG + chr3_1:11433306-11433325 None:intergenic 40.0%
CGAACTGAAGTTGAACCATT+AGG + chr3_1:11433474-11433493 None:intergenic 40.0%
ATGACAATGGAGTAAATCGG+AGG - chr3_1:11433529-11433548 Msa0348650:CDS 40.0%
TGACAATGGAGTAAATCGGA+GGG - chr3_1:11433530-11433549 Msa0348650:CDS 40.0%
! ATCTGCTCCACAGTTTTTCA+AGG + chr3_1:11433568-11433587 None:intergenic 40.0%
CAAACATACCCATCCATTTC+TGG + chr3_1:11433678-11433697 None:intergenic 40.0%
! AATGCACGTAACTTGCATGT+TGG - chr3_1:11433855-11433874 Msa0348650:intron 40.0%
!!! TGTGCATTTTGAGTTCCAGA+GGG + chr3_1:11434255-11434274 None:intergenic 40.0%
!!! TTGTGCATTTTGAGTTCCAG+AGG + chr3_1:11434254-11434273 None:intergenic 40.0%
! GTGTTGCTCATTGCAATACA+AGG + chr3_1:11434098-11434117 None:intergenic 40.0%
TTGCAATTTGTGTAGTGGTC+AGG - chr3_1:11434144-11434163 Msa0348650:five_prime_UTR 40.0%
!!! TTGTGCATTTTGAGTTCCAG+AGG - chr3_1:11434254-11434273 Msa0348650:five_prime_UTR 40.0%
!!! TGTGCATTTTGAGTTCCAGA+GGG - chr3_1:11434255-11434274 Msa0348650:five_prime_UTR 40.0%
! TTGAGACCAGATTGGTTGGT+TGG + chr3_1:11429150-11429169 None:intergenic 45.0%
AGAGTTGAGACCAGATTGGT+TGG + chr3_1:11429154-11429173 None:intergenic 45.0%
GAACAGAGTTGAGACCAGAT+TGG + chr3_1:11429158-11429177 None:intergenic 45.0%
GTAACTTAGAAGCCAAAGGG+TGG + chr3_1:11429563-11429582 None:intergenic 45.0%
AAACCTGGTCAATGGCAGAA+GGG + chr3_1:11429854-11429873 None:intergenic 45.0%
AATGGAAAGAGAGGCTTCAC+CGG - chr3_1:11430115-11430134 Msa0348650:intron 45.0%
GGTGCATACTCATCTCTAAC+CGG + chr3_1:11430137-11430156 None:intergenic 45.0%
GGTTAGAGATGAGTATGCAC+CGG - chr3_1:11430136-11430155 Msa0348650:intron 45.0%
!! CTGTTCTGACTAGCCCTTTT+AGG - chr3_1:11430361-11430380 Msa0348650:CDS 45.0%
!!! GACTAGCCCTTTTAGGTTGT+TGG - chr3_1:11430368-11430387 Msa0348650:CDS 45.0%
AGCTCTTCTGTTGTTGGGTT+GGG + chr3_1:11430450-11430469 None:intergenic 45.0%
AGCTCATTAAAGCGACCACA+GGG - chr3_1:11430466-11430485 Msa0348650:CDS 45.0%
ATTGGAGGCAGATATGTTGG+AGG - chr3_1:11430768-11430787 Msa0348650:CDS 45.0%
TGTTGGAGGATCCTTTGATG+TGG - chr3_1:11430782-11430801 Msa0348650:CDS 45.0%
CACAAGTGACTCCACATCAA+AGG + chr3_1:11430796-11430815 None:intergenic 45.0%
CTTTGATGTGGAGTCACTTG+TGG - chr3_1:11430794-11430813 Msa0348650:CDS 45.0%
!! GAAAGTGCTGTCCAATTTGG+CGG + chr3_1:11431111-11431130 None:intergenic 45.0%
GGATGATTTCCACGAAATGC+AGG - chr3_1:11431212-11431231 Msa0348650:intron 45.0%
!!! CTTTTAGCTCCTGCATTTCG+TGG + chr3_1:11431224-11431243 None:intergenic 45.0%
GGAGCTAAAAGTTCAAGCAG+AGG - chr3_1:11431233-11431252 Msa0348650:intron 45.0%
! TACCTGTGACTTGGCAACAT+CGG + chr3_1:11431262-11431281 None:intergenic 45.0%
GAGAGAGAGAGAGAGAATCT+TGG + chr3_1:11431439-11431458 None:intergenic 45.0%
AGTCTGAGCATAGTCACGTT+GGG + chr3_1:11431633-11431652 None:intergenic 45.0%
! TGCCAGCTTCAATTTTCGCT+CGG + chr3_1:11431706-11431725 None:intergenic 45.0%
TGAAGCTGGCAAATTAGAGC+TGG - chr3_1:11431715-11431734 Msa0348650:intron 45.0%
TGGCAAATTAGAGCTGGAAG+CGG - chr3_1:11431721-11431740 Msa0348650:intron 45.0%
AGAGAGGACATCATCGAGTA+TGG + chr3_1:11431765-11431784 None:intergenic 45.0%
!! CTCGTATTGGCCTTCACAAT+AGG + chr3_1:11431846-11431865 None:intergenic 45.0%
! TGTTGCGGGCTTTCTGTTTT+CGG + chr3_1:11432251-11432270 None:intergenic 45.0%
AACAGAAAGCCCGCAACAAA+TGG - chr3_1:11432253-11432272 Msa0348650:CDS 45.0%
GAAGTTGTGCATGCATCTAG+CGG - chr3_1:11432310-11432329 Msa0348650:CDS 45.0%
! CTGTTGATGAACGCAACAAC+TGG - chr3_1:11432365-11432384 Msa0348650:CDS 45.0%
TGTGTCGAAGACACTGGAAT+TGG - chr3_1:11432490-11432509 Msa0348650:intron 45.0%
GAGCTATCTGCCTGAACAAA+AGG + chr3_1:11432550-11432569 None:intergenic 45.0%
!! AATTATGGTGGTACCGGCAT+TGG - chr3_1:11432580-11432599 Msa0348650:intron 45.0%
TGCCTAGTTGAACTAATGGG+TGG - chr3_1:11432619-11432638 Msa0348650:intron 45.0%
GACCACCCATTAGTTCAACT+AGG + chr3_1:11432624-11432643 None:intergenic 45.0%
!! GGCTTTAAGCCCTCTAAAAC+TGG + chr3_1:11432767-11432786 None:intergenic 45.0%
CTTAAAGCCGTTGTGGTTGA+TGG - chr3_1:11432778-11432797 Msa0348650:CDS 45.0%
AGGTTTCCCATCAACCACAA+CGG + chr3_1:11432788-11432807 None:intergenic 45.0%
!! AGCACCATTTTTCCCACACA+AGG + chr3_1:11432893-11432912 None:intergenic 45.0%
AAAAATGGTGCTTCCAGCAC+AGG - chr3_1:11432901-11432920 Msa0348650:intron 45.0%
AAAATGGTGCTTCCAGCACA+GGG - chr3_1:11432902-11432921 Msa0348650:intron 45.0%
GAGAAGGATTCATGGGTTTG+TGG - chr3_1:11433216-11433235 Msa0348650:intron 45.0%
CATTCTGTTTCCAGTCCAGT+TGG + chr3_1:11433266-11433285 None:intergenic 45.0%
! CAACTGGACTGGAAACAGAA+TGG - chr3_1:11433264-11433283 Msa0348650:intron 45.0%
CACCGTATCACTAAAACCTG+TGG + chr3_1:11433364-11433383 None:intergenic 45.0%
! AGCTTGCCTTCAGCAAGTTT+TGG - chr3_1:11433416-11433435 Msa0348650:CDS 45.0%
! GCTTGCCTTCAGCAAGTTTT+GGG - chr3_1:11433417-11433436 Msa0348650:CDS 45.0%
!! CTGTTCCCAAAACTTGCTGA+AGG + chr3_1:11433425-11433444 None:intergenic 45.0%
!!! CTTCAGCAAGTTTTGGGAAC+AGG - chr3_1:11433423-11433442 Msa0348650:CDS 45.0%
TCAGTTCGAAGCCTTCTGTT+CGG - chr3_1:11433486-11433505 Msa0348650:CDS 45.0%
GAAAAACTGTGGAGCAGATG+TGG - chr3_1:11433569-11433588 Msa0348650:CDS 45.0%
!! AAAAAAAAAAAAAAAAAAAG+CGG + chr3_1:11430250-11430269 None:intergenic 5.0%
!! AAATGTTAAATAAATTAATT+GGG + chr3_1:11434387-11434406 None:intergenic 5.0%
GACGAACCAACCAACCAATC+TGG - chr3_1:11429141-11429160 Msa0348650:intron 50.0%
!! GAAGGGAGAAGGTGCTTCTT+TGG - chr3_1:11429335-11429354 Msa0348650:intron 50.0%
! GGATGGCAAGAGCATGAACA+TGG + chr3_1:11429803-11429822 None:intergenic 50.0%
AAACCCTTCTGCCATTGACC+AGG - chr3_1:11429848-11429867 Msa0348650:CDS 50.0%
CAAACCTGGTCAATGGCAGA+AGG + chr3_1:11429855-11429874 None:intergenic 50.0%
AAGTAGCGGCCTTTCGAAAG+CGG + chr3_1:11430015-11430034 None:intergenic 50.0%
TTCGAAAGGCCGCTACTTAG+TGG - chr3_1:11430017-11430036 Msa0348650:intron 50.0%
TAGGCCACTCCACTAAGTAG+CGG + chr3_1:11430029-11430048 None:intergenic 50.0%
GAGCAGTTTGAGAAGCAGCA+TGG - chr3_1:11430077-11430096 Msa0348650:intron 50.0%
GTTTGAGAAGCAGCATGGAG+TGG - chr3_1:11430082-11430101 Msa0348650:intron 50.0%
! TGCACCGGTCATATTTGCTC+AGG - chr3_1:11430151-11430170 Msa0348650:intron 50.0%
!! CTTCTGTTGTTGGGTTGGGA+GGG + chr3_1:11430446-11430465 None:intergenic 50.0%
!! TCTTCTGTTGTTGGGTTGGG+AGG + chr3_1:11430447-11430466 None:intergenic 50.0%
GAGCTCTTCTGTTGTTGGGT+TGG + chr3_1:11430451-11430470 None:intergenic 50.0%
GAGCTCATTAAAGCGACCAC+AGG - chr3_1:11430465-11430484 Msa0348650:CDS 50.0%
CAAGTGCCAACGACATGTCA+AGG + chr3_1:11431290-11431309 None:intergenic 50.0%
CTTGACATGTCGTTGGCACT+TGG - chr3_1:11431288-11431307 Msa0348650:intron 50.0%
CAGTCTGAGCATAGTCACGT+TGG + chr3_1:11431634-11431653 None:intergenic 50.0%
GACTGCTCAAGCATGTGGTA+AGG - chr3_1:11431649-11431668 Msa0348650:intron 50.0%
GACCGAGCGAAAATTGAAGC+TGG - chr3_1:11431701-11431720 Msa0348650:intron 50.0%
CGAACACTGCCAGCTAAGAA+AGG + chr3_1:11431960-11431979 None:intergenic 50.0%
ATACTGCAGTTCACTGAGCG+AGG - chr3_1:11432199-11432218 Msa0348650:CDS 50.0%
GTCTTCGACACAGACCATCA+AGG + chr3_1:11432482-11432501 None:intergenic 50.0%
ATGGTCTGTGTCGAAGACAC+TGG - chr3_1:11432484-11432503 Msa0348650:intron 50.0%
AAACTTTATAAGCCGGCCGC+AGG - chr3_1:11432648-11432667 Msa0348650:intron 50.0%
!! GAAAAGGTGCTTCCAACCTG+CGG + chr3_1:11432667-11432686 None:intergenic 50.0%
TAGAGGGCTTAAAGCCGTTG+TGG - chr3_1:11432771-11432790 Msa0348650:CDS 50.0%
! CTAGTCACAGCAGCTCTAAC+AGG + chr3_1:11432808-11432827 None:intergenic 50.0%
GGATTCATGGGTTTGTGGAG+AGG - chr3_1:11433221-11433240 Msa0348650:intron 50.0%
GAAGCCACTGAGAGCTAGTA+TGG - chr3_1:11433389-11433408 Msa0348650:CDS 50.0%
CCACTGAGAGCTAGTATGGT+GGG - chr3_1:11433393-11433412 Msa0348650:CDS 50.0%
CAATGGAGTAAATCGGAGGG+TGG - chr3_1:11433533-11433552 Msa0348650:CDS 50.0%
GTGGAAATACTTCAGCCCTC+TGG - chr3_1:11434008-11434027 Msa0348650:five_prime_UTR 50.0%
TCATGATCAACACTCAGGGG+CGG - chr3_1:11434177-11434196 Msa0348650:five_prime_UTR 50.0%
GTGGAAATACTTCAGCCCTC+TGG + chr3_1:11434008-11434027 None:intergenic 50.0%
GGCTGTTGAGAGAAGGGAGA+AGG - chr3_1:11429324-11429343 Msa0348650:intron 55.0%
GCAGAATCAGCACCACCCTT+TGG - chr3_1:11429548-11429567 Msa0348650:CDS 55.0%
AAGGCCGCTACTTAGTGGAG+TGG - chr3_1:11430022-11430041 Msa0348650:intron 55.0%
GGGTTCTCATCATCTCGGTG+TGG - chr3_1:11430389-11430408 Msa0348650:CDS 55.0%
!! ACCAGAAGGCACCGCCAAAT+TGG - chr3_1:11431097-11431116 Msa0348650:intron 55.0%
TCCAATTTGGCGGTGCCTTC+TGG + chr3_1:11431101-11431120 None:intergenic 55.0%
AGCCGATGTTGCCAAGTCAC+AGG - chr3_1:11431257-11431276 Msa0348650:intron 55.0%
GCTTGGTCTGCTTCTACGCA+CGG - chr3_1:11431595-11431614 Msa0348650:intron 55.0%
GCTCAGACTGCTCAAGCATG+TGG - chr3_1:11431644-11431663 Msa0348650:intron 55.0%
TGGAATTCCTTTCTCGGCCC+AGG - chr3_1:11432510-11432529 Msa0348650:intron 55.0%
TTCCTTTCTCGGCCCAGGAT+AGG - chr3_1:11432515-11432534 Msa0348650:intron 55.0%
ATCCTATCCTGGGCCGAGAA+AGG + chr3_1:11432520-11432539 None:intergenic 55.0%
TTTATAAGCCGGCCGCAGGT+TGG - chr3_1:11432652-11432671 Msa0348650:intron 55.0%
GATCTTCAGTGTGCGCCAAC+TGG - chr3_1:11433248-11433267 Msa0348650:intron 55.0%
GCCACTGAGAGCTAGTATGG+TGG - chr3_1:11433392-11433411 Msa0348650:CDS 55.0%
! CCCACCATACTAGCTCTCAG+TGG + chr3_1:11433396-11433415 None:intergenic 55.0%
GGAACAGGCAAGAGACAGCT+GGG - chr3_1:11433438-11433457 Msa0348650:CDS 55.0%
CTGGGAAGAGAGACGCCTAA+TGG - chr3_1:11433456-11433475 Msa0348650:CDS 55.0%
GCAGGCGCCTTGAAAAACTG+TGG - chr3_1:11433558-11433577 Msa0348650:CDS 55.0%
AAGAGCAGCTTTGCCGCCAT+CGG + chr3_1:11433601-11433620 None:intergenic 55.0%
CGGCTAGGACCGCTTTCGAA+AGG - chr3_1:11430003-11430022 Msa0348650:intron 60.0%
TCAGTGTGCGCCAACTGGAC+TGG - chr3_1:11433253-11433272 Msa0348650:intron 60.0%
GGGAACAGGCAAGAGACAGC+TGG - chr3_1:11433437-11433456 Msa0348650:CDS 60.0%
GTAAATCGGAGGGTGGCTGC+AGG - chr3_1:11433540-11433559 Msa0348650:CDS 60.0%
GCAGATGTGGAGTGTGCCGA+TGG - chr3_1:11433582-11433601 Msa0348650:CDS 60.0%
! GATGTGGAGTGTGCCGATGG+CGG - chr3_1:11433585-11433604 Msa0348650:CDS 60.0%
ACTCAGGGGCGGATGCATGT+GGG - chr3_1:11434188-11434207 Msa0348650:five_prime_UTR 60.0%
AGGTGCTTCCAACCTGCGGC+CGG + chr3_1:11432663-11432682 None:intergenic 65.0%
CACTCAGGGGCGGATGCATG+TGG - chr3_1:11434187-11434206 Msa0348650:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 11428651 11434538 11428651 ID=Msa0348650;Name=Msa0348650
chr3_1 mRNA 11428651 11434538 11428651 ID=Msa0348650-mRNA-1;Parent=Msa0348650;Name=Msa0348650-mRNA-1;_AED=0.13;_eAED=0.13;_QI=595|1|1|1|0.83|0.76|13|295|940
chr3_1 exon 11428651 11429030 11428651 ID=Msa0348650-mRNA-1:exon:3006;Parent=Msa0348650-mRNA-1
chr3_1 exon 11429501 11430001 11429501 ID=Msa0348650-mRNA-1:exon:3005;Parent=Msa0348650-mRNA-1
chr3_1 exon 11430266 11430981 11430266 ID=Msa0348650-mRNA-1:exon:3004;Parent=Msa0348650-mRNA-1
chr3_1 exon 11431124 11431222 11431124 ID=Msa0348650-mRNA-1:exon:3003;Parent=Msa0348650-mRNA-1
chr3_1 exon 11431369 11431598 11431369 ID=Msa0348650-mRNA-1:exon:3002;Parent=Msa0348650-mRNA-1
chr3_1 exon 11431760 11431811 11431760 ID=Msa0348650-mRNA-1:exon:3001;Parent=Msa0348650-mRNA-1
chr3_1 exon 11431911 11432097 11431911 ID=Msa0348650-mRNA-1:exon:3000;Parent=Msa0348650-mRNA-1
chr3_1 exon 11432192 11432410 11432192 ID=Msa0348650-mRNA-1:exon:2999;Parent=Msa0348650-mRNA-1
chr3_1 exon 11432702 11432871 11432702 ID=Msa0348650-mRNA-1:exon:2998;Parent=Msa0348650-mRNA-1
chr3_1 exon 11432972 11433205 11432972 ID=Msa0348650-mRNA-1:exon:2997;Parent=Msa0348650-mRNA-1
chr3_1 exon 11433320 11433730 11433320 ID=Msa0348650-mRNA-1:exon:2996;Parent=Msa0348650-mRNA-1
chr3_1 exon 11433990 11434429 11433990 ID=Msa0348650-mRNA-1:exon:2995;Parent=Msa0348650-mRNA-1
chr3_1 exon 11434465 11434538 11434465 ID=Msa0348650-mRNA-1:exon:2994;Parent=Msa0348650-mRNA-1
chr3_1 five_prime_UTR 11434465 11434538 11434465 ID=Msa0348650-mRNA-1:five_prime_utr;Parent=Msa0348650-mRNA-1
chr3_1 five_prime_UTR 11433990 11434429 11433990 ID=Msa0348650-mRNA-1:five_prime_utr;Parent=Msa0348650-mRNA-1
chr3_1 five_prime_UTR 11433650 11433730 11433650 ID=Msa0348650-mRNA-1:five_prime_utr;Parent=Msa0348650-mRNA-1
chr3_1 CDS 11433320 11433649 11433320 ID=Msa0348650-mRNA-1:cds;Parent=Msa0348650-mRNA-1
chr3_1 CDS 11432972 11433205 11432972 ID=Msa0348650-mRNA-1:cds;Parent=Msa0348650-mRNA-1
chr3_1 CDS 11432702 11432871 11432702 ID=Msa0348650-mRNA-1:cds;Parent=Msa0348650-mRNA-1
chr3_1 CDS 11432192 11432410 11432192 ID=Msa0348650-mRNA-1:cds;Parent=Msa0348650-mRNA-1
chr3_1 CDS 11431911 11432097 11431911 ID=Msa0348650-mRNA-1:cds;Parent=Msa0348650-mRNA-1
chr3_1 CDS 11431760 11431811 11431760 ID=Msa0348650-mRNA-1:cds;Parent=Msa0348650-mRNA-1
chr3_1 CDS 11431369 11431598 11431369 ID=Msa0348650-mRNA-1:cds;Parent=Msa0348650-mRNA-1
chr3_1 CDS 11431124 11431222 11431124 ID=Msa0348650-mRNA-1:cds;Parent=Msa0348650-mRNA-1
chr3_1 CDS 11430266 11430981 11430266 ID=Msa0348650-mRNA-1:cds;Parent=Msa0348650-mRNA-1
chr3_1 CDS 11429501 11430001 11429501 ID=Msa0348650-mRNA-1:cds;Parent=Msa0348650-mRNA-1
chr3_1 CDS 11428946 11429030 11428946 ID=Msa0348650-mRNA-1:cds;Parent=Msa0348650-mRNA-1
chr3_1 three_prime_UTR 11428651 11428945 11428651 ID=Msa0348650-mRNA-1:three_prime_utr;Parent=Msa0348650-mRNA-1
Gene Sequence

>Msa0348650

ATGAAGATGCAGAATCAGCACCACCCTTTGGCTTCTAAGTTACAAGAACAAACGGGGAACAAAAGATACACATTCATTCAAGCACATAGAGCTTGGCTTCTCAAATTAATGTTTCTATGGATTCTTCTGATGGCTCTGCTTAGTTGTATCATCTACAGCAAAATGGTTGTGCGTACTAAAGTGAGAAGGAAAGAGGTTTTGGGTAGTCTTTGTGATCAAAGTGCTAGAATGTTGCAAGACCAATTCAGTGTTACTGTCAACCATGTTCATGCTCTTGCCATCCTTGTTTCAACTTTCCATTATTACAGAAACCCTTCTGCCATTGACCAGGAAACTTTTGCAGAATATACGGCTAGGACCGCTTTCGAAAGGCCGCTACTTAGTGGAGTGGCCTATGCACAAAGAGTTGCTAACTCAGAAAGAGAGCAGTTTGAGAAGCAGCATGGAGTGGTTATAAAGACAATGGAAAGAGAGGCTTCACCGGTTAGAGATGAGTATGCACCGGTCATATTTGCTCAGGAAACTGTCTCTTACCTTGAGTCTATTGATATGATGTCTGGAGAGGAGGATCGAGAGAACATAATGAGAGCTAGAGCTACTGGGAAAGCTGTTCTGACTAGCCCTTTTAGGTTGTTGGGTTCTCATCATCTCGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTCCCTCCCAACCCAACAACAGAAGAGCTCATTAAAGCGACCACAGGATATGTTGGAGGATCCTTTGATGTGGAGTCACTTGTGGAAAATTTACTTGGTCAACGTGCTGGTCATCAAGCAATTTTGGTCAATGTATATGATGTCACGAACTCTACTGATCCCCTAATCATGTATGGCAACCAATACGAAGAAGGTGATGTTTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCAAATGATATGTAGGTATCACCAGAAGGCACCGCCAAATTGGACAGCACTTTCTACTGCAATCCTATTCTTTGTGATTCATCTATTAGTTGGTTACATTTTATATGGTGCTGGGAATCATATTGTCAAAGTAGAGGATGATTTCCACGAAATGCAGGAGCTAAAAGTTCAAGCAGAGGCAGCCGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCTATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGCACGGAATTGAACTCAACCCAACGTGACTATGCTCAGACTGCTCAAGCATGTGGTAAGGCTCTGATAGCATTAATAAATGAAGTGCTTGACCGAGCGAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCGGTTCCATTTGACATTCGTTCCATACTCGATGATGTCCTCTCTCTTTTTTCAGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCAGTGTTCGTTTCAGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATTGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGCCATATATTTGTTAAAGTTCATTTATCCGAAAACAGAAAGCCCGCAACAAATGGAAAGCTTGAGACTTATCGAAATGGAGGGTCTGAAGAAGTTGTGCATGCATCTAGCGGTTATAATCTCAAAACGCTAAGTGGATATGAAGCTGTTGATGAACGCAACAACTGGGATAATTTTAACCACCTAATTGCTGATGAAGAGTTTTTCTGCGATGCTTCAACTAAAAAAGTGGCCTCGAATGAATTTTATGAACAAGTCACCTTGATGGTCTGTGTCGAAGACACTGGAATTGGAATTCCTTTCTCGGCCCAGGATAGGATTTTCATGCCTTTTGTTCAGGCAGATAGCTCGACTTCTAGAAATTATGGTGGTACCGGCATTGGTTTGAGTATTAGTAAATGCCTAGTTGAACTAATGGGTGGTCAAATAAACTTTATAAGCCGGCCGCAGGTTGGAAGCACCTTTTCATTTACCGCGGATTTTGGAATATTTAAGAAGAATCCAATAACTGAGGTGAAGAAGGTTAACTATGAAGATCTACCATCCAGTTTTAGAGGGCTTAAAGCCGTTGTGGTTGATGGGAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTTGGGATAGAAGCTAAAGTCGCAAATGCCATCAATAAGGCTGTTTCCTTGTGTGGGAAAAATGGTGCTTCCAGCACAGGGTTATTCCAGCCTGATATTATTTTTGTTGAGAAGGATTCATGGGTTTGTGGAGAGGACGAGATCTTCAGTGTGCGCCAACTGGACTGGAAACAGAATGGACATATATTTAAGATGCCTCAAATGATCCTTCTAGCTACGAATATTAGTAATGATGAATTTGATAAAGCTAAATCCACAGGTTTTAGTGATACGGTGATCATGAAGCCACTGAGAGCTAGTATGGTGGGAGCTTGCCTTCAGCAAGTTTTGGGAACAGGCAAGAGACAGCTGGGAAGAGAGACGCCTAATGGTTCAACTTCAGTTCGAAGCCTTCTGTTCGGAAAGAAAATTTTAGTGGTTGATGACAATGGAGTAAATCGGAGGGTGGCTGCAGGCGCCTTGAAAAACTGTGGAGCAGATGTGGAGTGTGCCGATGGCGGCAAAGCTGCTCTTGAAATGCTTCAATTCCCTCACAAGTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGATGGTGGTCAGGTGAAATTTTATCATGATCAACACTCAGGGGCGGATGCATGTGGGAGCTATGCGCAAGTTACAATCAAAGTTGTTTAG
Protein sequence

>Msa0348650

MKMQNQHHPLASKLQEQTGNKRYTFIQAHRAWLLKLMFLWILLMALLSCIIYSKMVVRTKVRRKEVLGSLCDQSARMLQDQFSVTVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVANSEREQFEKQHGVVIKTMEREASPVRDEYAPVIFAQETVSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELIKATTGYVGGSFDVESLVENLLGQRAGHQAILVNVYDVTNSTDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPPNWTALSTAILFFVIHLLVGYILYGAGNHIVKVEDDFHEMQELKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENRKPATNGKLETYRNGGSEEVVHASSGYNLKTLSGYEAVDERNNWDNFNHLIADEEFFCDASTKKVASNEFYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKKVNYEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKRLGIEAKVANAINKAVSLCGKNGASSTGLFQPDIIFVEKDSWVCGEDEIFSVRQLDWKQNGHIFKMPQMILLATNISNDEFDKAKSTGFSDTVIMKPLRASMVGACLQQVLGTGKRQLGRETPNGSTSVRSLLFGKKILVVDDNGVNRRVAAGALKNCGADVECADGGKAALEMLQFPHKFDACFMDIQMPEMDGGQVKFYHDQHSGADACGSYAQVTIKVV*