Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348850 | XP_039685680.1 | 86.333 | 600 | 38 | 2 | 1 | 556 | 1 | 600 | 0.0 | 1038 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348850 | sp|Q9SZL8|FRS5_ARATH | 25.630 | 476 | 286 | 11 | 35 | 471 | 72 | 518 | 1.04e-43 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348850 | D3YBB9 | 74.576 | 590 | 112 | 3 | 1 | 556 | 52 | 637 | 0.0 | 891 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0348850 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348850 | MtrunA17_Chr3g0082121 | 33.404 | 473 | 271 | 8 | 42 | 492 | 49 | 499 | 7.69e-80 | 264 |
| Msa0348850 | MtrunA17_Chr2g0324011 | 29.880 | 502 | 294 | 9 | 37 | 504 | 8 | 485 | 1.21e-73 | 245 |
| Msa0348850 | MtrunA17_Chr1g0172971 | 89.744 | 117 | 12 | 0 | 1 | 117 | 1 | 117 | 7.26e-64 | 218 |
| Msa0348850 | MtrunA17_Chr1g0164591 | 34.084 | 311 | 179 | 4 | 132 | 420 | 1 | 307 | 1.47e-55 | 190 |
| Msa0348850 | MtrunA17_Chr1g0202341 | 28.008 | 482 | 280 | 12 | 35 | 478 | 50 | 502 | 2.84e-53 | 192 |
| Msa0348850 | MtrunA17_Chr8g0363841 | 28.455 | 492 | 299 | 10 | 41 | 502 | 22 | 490 | 2.62e-52 | 189 |
| Msa0348850 | MtrunA17_Chr6g0458391 | 26.627 | 507 | 327 | 12 | 42 | 532 | 231 | 708 | 5.14e-52 | 189 |
| Msa0348850 | MtrunA17_Chr1g0203721 | 26.422 | 545 | 332 | 15 | 7 | 506 | 22 | 542 | 3.34e-49 | 182 |
| Msa0348850 | MtrunA17_Chr2g0296781 | 28.419 | 468 | 267 | 13 | 40 | 472 | 1 | 435 | 5.39e-48 | 178 |
| Msa0348850 | MtrunA17_Chr5g0448761 | 26.506 | 498 | 305 | 12 | 35 | 495 | 59 | 532 | 3.94e-47 | 176 |
| Msa0348850 | MtrunA17_Chr2g0287651 | 26.767 | 467 | 277 | 11 | 40 | 471 | 79 | 515 | 1.54e-44 | 169 |
| Msa0348850 | MtrunA17_Chr5g0441581 | 24.621 | 528 | 336 | 13 | 1 | 502 | 1 | 492 | 3.39e-44 | 166 |
| Msa0348850 | MtrunA17_Chr6g0477261 | 30.745 | 322 | 189 | 6 | 181 | 472 | 7 | 324 | 2.93e-41 | 158 |
| Msa0348850 | MtrunA17_Chr7g0258861 | 32.372 | 312 | 158 | 8 | 31 | 308 | 2 | 294 | 1.08e-37 | 141 |
| Msa0348850 | MtrunA17_Chr1g0203051 | 21.637 | 513 | 345 | 7 | 51 | 533 | 94 | 579 | 1.24e-36 | 144 |
| Msa0348850 | MtrunA17_Chr2g0329031 | 25.208 | 480 | 292 | 13 | 18 | 468 | 3 | 444 | 2.34e-36 | 144 |
| Msa0348850 | MtrunA17_Chr1g0196541 | 25.000 | 464 | 286 | 10 | 40 | 471 | 1 | 434 | 7.68e-36 | 142 |
| Msa0348850 | MtrunA17_Chr1g0198761 | 26.104 | 521 | 312 | 15 | 37 | 512 | 48 | 540 | 9.20e-36 | 142 |
| Msa0348850 | MtrunA17_Chr3g0118611 | 27.295 | 403 | 263 | 8 | 159 | 541 | 60 | 452 | 1.33e-35 | 142 |
| Msa0348850 | MtrunA17_Chr2g0291591 | 25.806 | 465 | 285 | 13 | 38 | 471 | 66 | 501 | 2.98e-35 | 139 |
| Msa0348850 | MtrunA17_Chr5g0440451 | 27.469 | 324 | 222 | 6 | 216 | 536 | 237 | 550 | 1.60e-33 | 136 |
| Msa0348850 | MtrunA17_Chr3g0080351 | 25.259 | 483 | 331 | 12 | 32 | 501 | 72 | 537 | 7.10e-32 | 130 |
| Msa0348850 | MtrunA17_Chr5g0431001 | 25.333 | 450 | 264 | 12 | 41 | 445 | 66 | 488 | 1.55e-31 | 128 |
| Msa0348850 | MtrunA17_Chr1g0207551 | 24.270 | 445 | 316 | 5 | 35 | 466 | 33 | 469 | 4.67e-31 | 128 |
| Msa0348850 | MtrunA17_Chr2g0290391 | 24.581 | 537 | 328 | 14 | 40 | 531 | 55 | 559 | 1.77e-30 | 126 |
| Msa0348850 | MtrunA17_Chr2g0276841 | 24.449 | 499 | 309 | 15 | 50 | 508 | 84 | 554 | 3.45e-30 | 125 |
| Msa0348850 | MtrunA17_Chr5g0448511 | 27.076 | 277 | 193 | 5 | 199 | 471 | 10 | 281 | 3.60e-29 | 121 |
| Msa0348850 | MtrunA17_Chr2g0291581 | 24.798 | 496 | 316 | 13 | 1 | 471 | 35 | 498 | 5.37e-29 | 122 |
| Msa0348850 | MtrunA17_Chr2g0287061 | 24.544 | 493 | 285 | 15 | 42 | 508 | 189 | 620 | 1.34e-28 | 120 |
| Msa0348850 | MtrunA17_Chr2g0294841 | 25.556 | 450 | 277 | 13 | 42 | 454 | 51 | 479 | 6.78e-26 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348850 | AT4G38180.1 | 25.630 | 476 | 286 | 11 | 35 | 471 | 72 | 518 | 1.05e-44 | 169 |
| Msa0348850 | AT3G06250.2 | 25.551 | 454 | 287 | 9 | 24 | 470 | 178 | 587 | 9.40e-37 | 145 |
| Msa0348850 | AT3G06250.1 | 25.551 | 454 | 287 | 9 | 24 | 470 | 178 | 587 | 9.40e-37 | 145 |
| Msa0348850 | AT3G06250.3 | 25.551 | 454 | 287 | 9 | 24 | 470 | 178 | 587 | 9.40e-37 | 145 |
| Msa0348850 | AT4G38170.1 | 26.460 | 291 | 202 | 5 | 208 | 495 | 25 | 306 | 2.47e-32 | 131 |
| Msa0348850 | AT4G15090.1 | 29.278 | 263 | 176 | 3 | 208 | 466 | 233 | 489 | 9.48e-32 | 130 |
| Msa0348850 | AT4G15090.5 | 29.278 | 263 | 176 | 3 | 208 | 466 | 233 | 489 | 9.48e-32 | 130 |
| Msa0348850 | AT4G15090.3 | 29.278 | 263 | 176 | 3 | 208 | 466 | 233 | 489 | 9.48e-32 | 130 |
| Msa0348850 | AT4G15090.2 | 29.278 | 263 | 176 | 3 | 208 | 466 | 233 | 489 | 9.48e-32 | 130 |
| Msa0348850 | AT4G15090.4 | 29.278 | 263 | 176 | 3 | 208 | 466 | 233 | 489 | 9.48e-32 | 130 |
| Msa0348850 | AT1G76320.3 | 24.681 | 470 | 293 | 12 | 40 | 479 | 1 | 439 | 2.33e-31 | 129 |
| Msa0348850 | AT1G76320.1 | 24.681 | 470 | 293 | 12 | 40 | 479 | 1 | 439 | 4.41e-31 | 129 |
| Msa0348850 | AT1G76320.4 | 24.681 | 470 | 293 | 12 | 40 | 479 | 1 | 439 | 4.41e-31 | 129 |
| Msa0348850 | AT1G76320.2 | 24.681 | 470 | 293 | 12 | 40 | 479 | 1 | 439 | 4.76e-31 | 128 |
| Msa0348850 | AT3G22170.2 | 23.800 | 479 | 330 | 13 | 33 | 495 | 67 | 526 | 4.39e-30 | 125 |
| Msa0348850 | AT3G22170.1 | 23.800 | 479 | 330 | 13 | 33 | 495 | 67 | 526 | 4.39e-30 | 125 |
| Msa0348850 | AT2G32250.5 | 24.307 | 469 | 308 | 11 | 4 | 467 | 8 | 434 | 3.24e-29 | 123 |
| Msa0348850 | AT2G32250.2 | 24.307 | 469 | 308 | 11 | 4 | 467 | 8 | 434 | 3.90e-29 | 123 |
| Msa0348850 | AT2G32250.4 | 24.307 | 469 | 308 | 11 | 4 | 467 | 8 | 434 | 3.90e-29 | 123 |
| Msa0348850 | AT2G32250.6 | 24.307 | 469 | 308 | 11 | 4 | 467 | 8 | 434 | 4.81e-29 | 122 |
| Msa0348850 | AT2G32250.1 | 24.307 | 469 | 308 | 11 | 4 | 467 | 8 | 434 | 4.81e-29 | 122 |
| Msa0348850 | AT2G32250.3 | 24.307 | 469 | 308 | 11 | 4 | 467 | 8 | 434 | 4.81e-29 | 122 |
| Msa0348850 | AT5G18960.2 | 29.167 | 264 | 178 | 4 | 208 | 470 | 356 | 611 | 7.02e-29 | 122 |
| Msa0348850 | AT5G18960.1 | 29.167 | 264 | 178 | 4 | 208 | 470 | 356 | 611 | 7.02e-29 | 122 |
| Msa0348850 | AT2G32250.8 | 24.826 | 431 | 279 | 10 | 42 | 467 | 3 | 393 | 7.80e-29 | 122 |
| Msa0348850 | AT2G32250.7 | 24.826 | 431 | 279 | 10 | 42 | 467 | 3 | 393 | 8.65e-29 | 122 |
| Msa0348850 | AT2G27110.2 | 26.692 | 266 | 187 | 3 | 208 | 471 | 204 | 463 | 3.13e-28 | 120 |
| Msa0348850 | AT2G27110.1 | 26.692 | 266 | 187 | 3 | 208 | 471 | 204 | 463 | 3.13e-28 | 120 |
| Msa0348850 | AT2G27110.3 | 26.692 | 266 | 187 | 3 | 208 | 471 | 59 | 318 | 3.25e-28 | 120 |
| Msa0348850 | AT1G10240.2 | 23.790 | 496 | 316 | 15 | 50 | 508 | 62 | 532 | 1.40e-27 | 117 |
| Msa0348850 | AT1G10240.1 | 23.790 | 496 | 316 | 15 | 50 | 508 | 62 | 532 | 1.40e-27 | 117 |
| Msa0348850 | AT5G28530.3 | 24.099 | 444 | 258 | 13 | 41 | 434 | 60 | 474 | 1.10e-25 | 112 |
| Msa0348850 | AT5G28530.2 | 24.099 | 444 | 258 | 13 | 41 | 434 | 60 | 474 | 1.10e-25 | 112 |
| Msa0348850 | AT5G28530.1 | 24.099 | 444 | 258 | 13 | 41 | 434 | 60 | 474 | 1.17e-25 | 112 |
| Msa0348850 | AT4G19990.5 | 25.467 | 428 | 277 | 14 | 42 | 455 | 27 | 426 | 1.88e-25 | 111 |
| Msa0348850 | AT4G19990.3 | 25.467 | 428 | 277 | 14 | 42 | 455 | 27 | 426 | 2.24e-25 | 111 |
| Msa0348850 | AT4G19990.4 | 25.467 | 428 | 277 | 14 | 42 | 455 | 27 | 426 | 2.24e-25 | 111 |
| Msa0348850 | AT4G19990.7 | 25.467 | 428 | 277 | 14 | 42 | 455 | 41 | 440 | 2.28e-25 | 111 |
| Msa0348850 | AT4G19990.6 | 25.467 | 428 | 277 | 14 | 42 | 455 | 27 | 426 | 2.94e-25 | 110 |
| Msa0348850 | AT4G19990.2 | 25.467 | 428 | 277 | 14 | 42 | 455 | 27 | 426 | 2.94e-25 | 110 |
| Msa0348850 | AT1G80010.1 | 27.820 | 266 | 182 | 6 | 213 | 474 | 284 | 543 | 3.33e-23 | 104 |
| Msa0348850 | AT1G52520.1 | 21.161 | 534 | 343 | 13 | 39 | 529 | 88 | 586 | 7.60e-23 | 103 |
| Msa0348850 | AT4G19990.1 | 27.888 | 251 | 174 | 4 | 208 | 455 | 123 | 369 | 1.96e-22 | 102 |
Find 76 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTACGAGTTAACTAATT+TGG | 0.172886 | 3_1:-11679552 | Msa0348850:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3_1:-11679285 | Msa0348850:CDS |
| TATCGTCTGTGGTTTCTTAT+TGG | 0.203510 | 3_1:+11679706 | None:intergenic |
| TACATTTCAGCTGCCTTTAT+TGG | 0.203801 | 3_1:-11679833 | Msa0348850:intron |
| GCATAAGATTTCCGTAAGTT+TGG | 0.288708 | 3_1:+11679429 | None:intergenic |
| GCCTTCCAATGTTGATGTTT+TGG | 0.297192 | 3_1:-11678988 | Msa0348850:CDS |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 3_1:-11679511 | Msa0348850:CDS |
| ACAAAATAAGAAATCAAATA+AGG | 0.334199 | 3_1:-11681095 | Msa0348850:CDS |
| TCTGACGTTGGCCTGTTGTT+AGG | 0.351359 | 3_1:+11681013 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 3_1:+11679820 | None:intergenic |
| GAAGGCCTACTTCAGACTTT+AGG | 0.375686 | 3_1:-11679460 | Msa0348850:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.376102 | 3_1:-11679411 | Msa0348850:CDS |
| TTCCATGATTCTTTATTACT+AGG | 0.389886 | 3_1:+11681223 | None:intergenic |
| GCCGATATTGATTGTTTGTT+CGG | 0.392943 | 3_1:+11680457 | None:intergenic |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 3_1:-11680747 | Msa0348850:CDS |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3_1:-11679111 | Msa0348850:CDS |
| TCATGCTGAGTTGGACTTCA+AGG | 0.402098 | 3_1:-11679243 | Msa0348850:CDS |
| TTATGCATTGGTCTTCAGCT+TGG | 0.417102 | 3_1:-11679412 | Msa0348850:CDS |
| ATGTCTATAAGATATATAGA+TGG | 0.423693 | 3_1:-11680892 | Msa0348850:CDS |
| AGGTGGCTTGTCCAAACTTA+CGG | 0.423981 | 3_1:-11679440 | Msa0348850:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 3_1:-11680734 | Msa0348850:CDS |
| AACAATCAATATCGGCCATT+AGG | 0.428800 | 3_1:-11680450 | Msa0348850:intron |
| TCCATGATTCTTTATTACTA+GGG | 0.436638 | 3_1:+11681224 | None:intergenic |
| ACCGAACAAACAATCAATAT+CGG | 0.440661 | 3_1:-11680458 | Msa0348850:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3_1:-11680944 | Msa0348850:CDS |
| CGAAAAGTAAATGAAGTTCA+AGG | 0.448756 | 3_1:-11680809 | Msa0348850:CDS |
| AACCGCATCAGTTGACTGTT+GGG | 0.451336 | 3_1:+11679191 | None:intergenic |
| ATATTGATTGTTTGTTCGGT+AGG | 0.460801 | 3_1:+11680461 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 3_1:-11680746 | Msa0348850:CDS |
| GTCTGCTTAATCCTAACAAC+AGG | 0.466827 | 3_1:-11681024 | Msa0348850:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.480587 | 3_1:-11679145 | Msa0348850:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 3_1:+11680695 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3_1:+11679109 | None:intergenic |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3_1:-11679095 | Msa0348850:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 3_1:-11679510 | Msa0348850:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3_1:-11679271 | Msa0348850:CDS |
| CTCAGGTAACACAAATGCTC+TGG | 0.496027 | 3_1:+11680839 | None:intergenic |
| CCCCTAGTAATAAAGAATCA+TGG | 0.497629 | 3_1:-11681225 | Msa0348850:CDS |
| TGTCTTCTGCAACATCAACT+TGG | 0.500580 | 3_1:+11680562 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 3_1:+11680950 | None:intergenic |
| CGTTATGTTTGTAACAAACA+AGG | 0.507173 | 3_1:-11681061 | Msa0348850:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3_1:-11679252 | Msa0348850:CDS |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 3_1:-11681050 | Msa0348850:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.514358 | 3_1:+11680851 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3_1:+11679303 | None:intergenic |
| GAACCGCATCAGTTGACTGT+TGG | 0.521951 | 3_1:+11679190 | None:intergenic |
| CTTACGGAAATCTTATGCAT+TGG | 0.523146 | 3_1:-11679424 | Msa0348850:CDS |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 3_1:-11681157 | Msa0348850:CDS |
| TGTCTATAAGATATATAGAT+GGG | 0.523615 | 3_1:-11680891 | Msa0348850:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3_1:+11679114 | None:intergenic |
| TTCACAAACTCAATAACCAC+TGG | 0.531770 | 3_1:+11680986 | None:intergenic |
| AATTCAACAACGCACTAGCC+TGG | 0.534735 | 3_1:+11679675 | None:intergenic |
| GGCCTACTTCAGACTTTAGG+TGG | 0.536366 | 3_1:-11679457 | Msa0348850:CDS |
| TGGGCTTTGCTCATGGCACA+TGG | 0.540761 | 3_1:-11679621 | Msa0348850:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3_1:+11679308 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3_1:-11679094 | Msa0348850:CDS |
| TGCATCCAAAACATCAACAT+TGG | 0.544202 | 3_1:+11678983 | None:intergenic |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 3_1:-11681049 | Msa0348850:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.567659 | 3_1:-11680885 | Msa0348850:CDS |
| TCCAAAACATCAACATTGGA+AGG | 0.569301 | 3_1:+11678987 | None:intergenic |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 3_1:-11680731 | Msa0348850:CDS |
| CCATGATTCTTTATTACTAG+GGG | 0.580036 | 3_1:+11681225 | None:intergenic |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 3_1:-11680740 | Msa0348850:CDS |
| TGAATAAATGCAAAGCAAGC+TGG | 0.591761 | 3_1:+11679149 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3_1:-11679108 | Msa0348850:CDS |
| GATGCTGATAATGATAATGA+CGG | 0.621240 | 3_1:-11679011 | Msa0348850:CDS |
| AGCCACCTAAAGTCTGAAGT+AGG | 0.626906 | 3_1:+11679455 | None:intergenic |
| ACCACTGGACTGTCTGACGT+TGG | 0.633462 | 3_1:+11681001 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.637387 | 3_1:-11680726 | Msa0348850:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3_1:-11679270 | Msa0348850:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.645542 | 3_1:-11681304 | Msa0348850:CDS |
| ATGCTGATAATGATAATGAC+GGG | 0.647195 | 3_1:-11679010 | Msa0348850:CDS |
| TGGTCTGTATATATCGTCTG+TGG | 0.648431 | 3_1:+11679695 | None:intergenic |
| ATCCCAACAGTCAACTGATG+CGG | 0.661071 | 3_1:-11679193 | Msa0348850:CDS |
| ACAGACGATATATACAGACC+AGG | 0.696353 | 3_1:-11679693 | Msa0348850:CDS |
| GCCAACGTCAGACAGTCCAG+TGG | 0.727445 | 3_1:-11681002 | Msa0348850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATGTAAGTTATATAT+AGG | - | chr3_1:11680404-11680423 | Msa0348850:intron | 10.0% |
| !! | ATTTAATGTAAGTTATATAT+AGG | - | chr3_1:11680404-11680423 | Msa0348850:intron | 10.0% |
| !! | ACAAAATAAGAAATCAAATA+AGG | - | chr3_1:11679192-11679211 | Msa0348850:CDS | 15.0% |
| !!! | ATGATGAAAAATTGTTTTAA+TGG | - | chr3_1:11680805-11680824 | Msa0348850:CDS | 15.0% |
| !! | ACAAAATAAGAAATCAAATA+AGG | - | chr3_1:11679192-11679211 | Msa0348850:CDS | 15.0% |
| !!! | ATGATGAAAAATTGTTTTAA+TGG | - | chr3_1:11680805-11680824 | Msa0348850:CDS | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr3_1:11679109-11679128 | Msa0348850:CDS | 20.0% |
| !! | ATGTCTATAAGATATATAGA+TGG | - | chr3_1:11679395-11679414 | Msa0348850:CDS | 20.0% |
| !! | TGTCTATAAGATATATAGAT+GGG | - | chr3_1:11679396-11679415 | Msa0348850:CDS | 20.0% |
| !!! | TCAATTCAGAATATTTTTCT+AGG | - | chr3_1:11680634-11680653 | Msa0348850:intron | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | - | chr3_1:11680809-11680828 | Msa0348850:CDS | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr3_1:11679109-11679128 | Msa0348850:CDS | 20.0% |
| !! | ATGTCTATAAGATATATAGA+TGG | - | chr3_1:11679395-11679414 | Msa0348850:CDS | 20.0% |
| !! | TGTCTATAAGATATATAGAT+GGG | - | chr3_1:11679396-11679415 | Msa0348850:CDS | 20.0% |
| !!! | TCAATTCAGAATATTTTTCT+AGG | - | chr3_1:11680634-11680653 | Msa0348850:intron | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | - | chr3_1:11680809-11680828 | Msa0348850:CDS | 20.0% |
| ! | TCCATGATTCTTTATTACTA+GGG | + | chr3_1:11679066-11679085 | None:intergenic | 25.0% |
| ! | TTCCATGATTCTTTATTACT+AGG | + | chr3_1:11679067-11679086 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | - | chr3_1:11679143-11679162 | Msa0348850:CDS | 25.0% |
| !!! | GCTGTAATAAATTTTAAAGC+TGG | - | chr3_1:11679508-11679527 | Msa0348850:CDS | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | + | chr3_1:11679708-11679727 | None:intergenic | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr3_1:11679855-11679874 | None:intergenic | 25.0% |
| !! | TAGTATTTTGTACTTCTCTT+AGG | - | chr3_1:11679861-11679880 | Msa0348850:intron | 25.0% |
| !! | CATTATGTTGTATTTTGTTC+TGG | - | chr3_1:11679905-11679924 | Msa0348850:intron | 25.0% |
| ! | CTCTTAAACATAAATGCATT+TGG | + | chr3_1:11680041-11680060 | None:intergenic | 25.0% |
| ! | ATTTATGTTTAAGAGATCAG+TGG | - | chr3_1:11680046-11680065 | Msa0348850:intron | 25.0% |
| ! | TTTATGTTTAAGAGATCAGT+GGG | - | chr3_1:11680047-11680066 | Msa0348850:intron | 25.0% |
| ! | ACATAAATGCATTCTAATTG+AGG | - | chr3_1:11680346-11680365 | Msa0348850:intron | 25.0% |
| ! | CATAAATGCATTCTAATTGA+GGG | - | chr3_1:11680347-11680366 | Msa0348850:intron | 25.0% |
| !! | GTTGTATTTTGTTCTGATTT+GGG | - | chr3_1:11680426-11680445 | Msa0348850:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr3_1:11680470-11680489 | None:intergenic | 25.0% |
| !! | ATTTTTCTAGGTGTTTTTCA+TGG | - | chr3_1:11680646-11680665 | Msa0348850:intron | 25.0% |
| !! | TTTTTCTAGGTGTTTTTCAT+GGG | - | chr3_1:11680647-11680666 | Msa0348850:intron | 25.0% |
| ! | TTTCTACGAGTTAACTAATT+TGG | - | chr3_1:11680735-11680754 | Msa0348850:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr3_1:11681002-11681021 | Msa0348850:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr3_1:11681176-11681195 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr3_1:11681176-11681195 | Msa0348850:CDS | 25.0% |
| !! | AACTTTGAAAAACTTGTTCA+AGG | + | chr3_1:11681223-11681242 | None:intergenic | 25.0% |
| ! | TCCATGATTCTTTATTACTA+GGG | + | chr3_1:11679066-11679085 | None:intergenic | 25.0% |
| ! | TTCCATGATTCTTTATTACT+AGG | + | chr3_1:11679067-11679086 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | - | chr3_1:11679143-11679162 | Msa0348850:CDS | 25.0% |
| !!! | GCTGTAATAAATTTTAAAGC+TGG | - | chr3_1:11679508-11679527 | Msa0348850:CDS | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | + | chr3_1:11679708-11679727 | None:intergenic | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr3_1:11679855-11679874 | None:intergenic | 25.0% |
| !! | TAGTATTTTGTACTTCTCTT+AGG | - | chr3_1:11679861-11679880 | Msa0348850:intron | 25.0% |
| !! | CATTATGTTGTATTTTGTTC+TGG | - | chr3_1:11679905-11679924 | Msa0348850:intron | 25.0% |
| ! | CTCTTAAACATAAATGCATT+TGG | + | chr3_1:11680041-11680060 | None:intergenic | 25.0% |
| ! | ATTTATGTTTAAGAGATCAG+TGG | - | chr3_1:11680046-11680065 | Msa0348850:intron | 25.0% |
| ! | TTTATGTTTAAGAGATCAGT+GGG | - | chr3_1:11680047-11680066 | Msa0348850:intron | 25.0% |
| ! | ACATAAATGCATTCTAATTG+AGG | - | chr3_1:11680346-11680365 | Msa0348850:intron | 25.0% |
| ! | CATAAATGCATTCTAATTGA+GGG | - | chr3_1:11680347-11680366 | Msa0348850:intron | 25.0% |
| !! | GTTGTATTTTGTTCTGATTT+GGG | - | chr3_1:11680426-11680445 | Msa0348850:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr3_1:11680470-11680489 | None:intergenic | 25.0% |
| !! | ATTTTTCTAGGTGTTTTTCA+TGG | - | chr3_1:11680646-11680665 | Msa0348850:intron | 25.0% |
| !! | TTTTTCTAGGTGTTTTTCAT+GGG | - | chr3_1:11680647-11680666 | Msa0348850:intron | 25.0% |
| ! | TTTCTACGAGTTAACTAATT+TGG | - | chr3_1:11680735-11680754 | Msa0348850:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr3_1:11681002-11681021 | Msa0348850:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr3_1:11681176-11681195 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr3_1:11681176-11681195 | Msa0348850:CDS | 25.0% |
| !! | AACTTTGAAAAACTTGTTCA+AGG | + | chr3_1:11681223-11681242 | None:intergenic | 25.0% |
| CCATGATTCTTTATTACTAG+GGG | + | chr3_1:11679065-11679084 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | - | chr3_1:11679130-11679149 | Msa0348850:CDS | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | - | chr3_1:11679226-11679245 | Msa0348850:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | - | chr3_1:11679237-11679256 | Msa0348850:CDS | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | - | chr3_1:11679238-11679257 | Msa0348850:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | - | chr3_1:11679402-11679421 | Msa0348850:CDS | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr3_1:11679439-11679458 | None:intergenic | 30.0% |
| !! | TTACTTTTCGAAATGATCTC+AGG | + | chr3_1:11679468-11679487 | None:intergenic | 30.0% |
| CGAAAAGTAAATGAAGTTCA+AGG | - | chr3_1:11679478-11679497 | Msa0348850:CDS | 30.0% | |
| AGAACGTCTTATGAAGTTAT+GGG | - | chr3_1:11679541-11679560 | Msa0348850:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | + | chr3_1:11679595-11679614 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCTAGCATTTTT+TGG | - | chr3_1:11679742-11679761 | Msa0348850:CDS | 30.0% |
| !!! | AGACATAGCTAGCATTTTTT+GGG | - | chr3_1:11679743-11679762 | Msa0348850:CDS | 30.0% |
| ! | ATATTGATTGTTTGTTCGGT+AGG | + | chr3_1:11679829-11679848 | None:intergenic | 30.0% |
| ACCGAACAAACAATCAATAT+CGG | - | chr3_1:11679829-11679848 | Msa0348850:intron | 30.0% | |
| TGTAAGATTGATAAAGTTGC+AGG | - | chr3_1:11680079-11680098 | Msa0348850:intron | 30.0% | |
| !! | AAAGAGCATTCTTATGATCA+AGG | + | chr3_1:11680123-11680142 | None:intergenic | 30.0% |
| ! | GGTTGTATTTTGTTCTGATT+TGG | - | chr3_1:11680425-11680444 | Msa0348850:intron | 30.0% |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | - | chr3_1:11680487-11680506 | Msa0348850:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr3_1:11680691-11680710 | Msa0348850:intron | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr3_1:11680776-11680795 | Msa0348850:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr3_1:11680777-11680796 | Msa0348850:CDS | 30.0% | |
| ! | GTTAAGTTACATTTTACAGC+TGG | - | chr3_1:11680898-11680917 | Msa0348850:CDS | 30.0% |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr3_1:11680987-11681006 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr3_1:11681181-11681200 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr3_1:11681179-11681198 | Msa0348850:CDS | 30.0% | |
| ! | GATGCTGATAATGATAATGA+CGG | - | chr3_1:11681276-11681295 | Msa0348850:CDS | 30.0% |
| ! | ATGCTGATAATGATAATGAC+GGG | - | chr3_1:11681277-11681296 | Msa0348850:CDS | 30.0% |
| CCATGATTCTTTATTACTAG+GGG | + | chr3_1:11679065-11679084 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | - | chr3_1:11679130-11679149 | Msa0348850:CDS | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | - | chr3_1:11679226-11679245 | Msa0348850:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | - | chr3_1:11679237-11679256 | Msa0348850:CDS | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | - | chr3_1:11679238-11679257 | Msa0348850:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | - | chr3_1:11679402-11679421 | Msa0348850:CDS | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr3_1:11679439-11679458 | None:intergenic | 30.0% |
| !! | TTACTTTTCGAAATGATCTC+AGG | + | chr3_1:11679468-11679487 | None:intergenic | 30.0% |
| CGAAAAGTAAATGAAGTTCA+AGG | - | chr3_1:11679478-11679497 | Msa0348850:CDS | 30.0% | |
| AGAACGTCTTATGAAGTTAT+GGG | - | chr3_1:11679541-11679560 | Msa0348850:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | + | chr3_1:11679595-11679614 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCTAGCATTTTT+TGG | - | chr3_1:11679742-11679761 | Msa0348850:CDS | 30.0% |
| !!! | AGACATAGCTAGCATTTTTT+GGG | - | chr3_1:11679743-11679762 | Msa0348850:CDS | 30.0% |
| ! | ATATTGATTGTTTGTTCGGT+AGG | + | chr3_1:11679829-11679848 | None:intergenic | 30.0% |
| ACCGAACAAACAATCAATAT+CGG | - | chr3_1:11679829-11679848 | Msa0348850:intron | 30.0% | |
| TGTAAGATTGATAAAGTTGC+AGG | - | chr3_1:11680079-11680098 | Msa0348850:intron | 30.0% | |
| !! | AAAGAGCATTCTTATGATCA+AGG | + | chr3_1:11680123-11680142 | None:intergenic | 30.0% |
| ! | GGTTGTATTTTGTTCTGATT+TGG | - | chr3_1:11680425-11680444 | Msa0348850:intron | 30.0% |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | - | chr3_1:11680487-11680506 | Msa0348850:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr3_1:11680691-11680710 | Msa0348850:intron | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr3_1:11680776-11680795 | Msa0348850:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr3_1:11680777-11680796 | Msa0348850:CDS | 30.0% | |
| ! | GTTAAGTTACATTTTACAGC+TGG | - | chr3_1:11680898-11680917 | Msa0348850:CDS | 30.0% |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr3_1:11680987-11681006 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr3_1:11681181-11681200 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr3_1:11681179-11681198 | Msa0348850:CDS | 30.0% | |
| ! | GATGCTGATAATGATAATGA+CGG | - | chr3_1:11681276-11681295 | Msa0348850:CDS | 30.0% |
| ! | ATGCTGATAATGATAATGAC+GGG | - | chr3_1:11681277-11681296 | Msa0348850:CDS | 30.0% |
| ATATCAACTTCATCTGAGAG+TGG | - | chr3_1:11678983-11679002 | Msa0348850:CDS | 35.0% | |
| CCCCTAGTAATAAAGAATCA+TGG | - | chr3_1:11679062-11679081 | Msa0348850:CDS | 35.0% | |
| TTCACAAACTCAATAACCAC+TGG | + | chr3_1:11679304-11679323 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | - | chr3_1:11679321-11679340 | Msa0348850:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | - | chr3_1:11679326-11679345 | Msa0348850:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | - | chr3_1:11679327-11679346 | Msa0348850:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | - | chr3_1:11679540-11679559 | Msa0348850:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | - | chr3_1:11679547-11679566 | Msa0348850:CDS | 35.0% | |
| TCTAATGACGATTCGTCAAA+AGG | - | chr3_1:11679621-11679640 | Msa0348850:CDS | 35.0% | |
| ! | GCCGATATTGATTGTTTGTT+CGG | + | chr3_1:11679833-11679852 | None:intergenic | 35.0% |
| AACAATCAATATCGGCCATT+AGG | - | chr3_1:11679837-11679856 | Msa0348850:intron | 35.0% | |
| ! | TGTTGTATTTTGTTCTGGCA+TGG | - | chr3_1:11679910-11679929 | Msa0348850:intron | 35.0% |
| GATCTCTTAAACTACAGACT+CGG | + | chr3_1:11679997-11680016 | None:intergenic | 35.0% | |
| TACTTAGCAACCATTAAGCA+AGG | - | chr3_1:11680142-11680161 | Msa0348850:intron | 35.0% | |
| CAAGATGTATCCTTGCTTAA+TGG | + | chr3_1:11680155-11680174 | None:intergenic | 35.0% | |
| GGATACATCTTGTATTGAAC+AGG | - | chr3_1:11680163-11680182 | Msa0348850:intron | 35.0% | |
| AATGCATTCTAATTGAGGGT+TGG | - | chr3_1:11680351-11680370 | Msa0348850:intron | 35.0% | |
| TACATTTCAGCTGCCTTTAT+TGG | - | chr3_1:11680454-11680473 | Msa0348850:CDS | 35.0% | |
| TATCGTCTGTGGTTTCTTAT+TGG | + | chr3_1:11680584-11680603 | None:intergenic | 35.0% | |
| GCATAAGATTTCCGTAAGTT+TGG | + | chr3_1:11680861-11680880 | None:intergenic | 35.0% | |
| CTTACGGAAATCTTATGCAT+TGG | - | chr3_1:11680863-11680882 | Msa0348850:CDS | 35.0% | |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr3_1:11680946-11680965 | Msa0348850:CDS | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr3_1:11681016-11681035 | Msa0348850:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr3_1:11681017-11681036 | Msa0348850:CDS | 35.0% | |
| TGAATAAATGCAAAGCAAGC+TGG | + | chr3_1:11681141-11681160 | None:intergenic | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr3_1:11681142-11681161 | Msa0348850:CDS | 35.0% | |
| TCCAAAACATCAACATTGGA+AGG | + | chr3_1:11681303-11681322 | None:intergenic | 35.0% | |
| TGCATCCAAAACATCAACAT+TGG | + | chr3_1:11681307-11681326 | None:intergenic | 35.0% | |
| ATATCAACTTCATCTGAGAG+TGG | - | chr3_1:11678983-11679002 | Msa0348850:CDS | 35.0% | |
| CCCCTAGTAATAAAGAATCA+TGG | - | chr3_1:11679062-11679081 | Msa0348850:CDS | 35.0% | |
| TTCACAAACTCAATAACCAC+TGG | + | chr3_1:11679304-11679323 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | - | chr3_1:11679321-11679340 | Msa0348850:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | - | chr3_1:11679326-11679345 | Msa0348850:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | - | chr3_1:11679327-11679346 | Msa0348850:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | - | chr3_1:11679540-11679559 | Msa0348850:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | - | chr3_1:11679547-11679566 | Msa0348850:CDS | 35.0% | |
| TCTAATGACGATTCGTCAAA+AGG | - | chr3_1:11679621-11679640 | Msa0348850:CDS | 35.0% | |
| ! | GCCGATATTGATTGTTTGTT+CGG | + | chr3_1:11679833-11679852 | None:intergenic | 35.0% |
| AACAATCAATATCGGCCATT+AGG | - | chr3_1:11679837-11679856 | Msa0348850:intron | 35.0% | |
| ! | TGTTGTATTTTGTTCTGGCA+TGG | - | chr3_1:11679910-11679929 | Msa0348850:intron | 35.0% |
| GATCTCTTAAACTACAGACT+CGG | + | chr3_1:11679997-11680016 | None:intergenic | 35.0% | |
| TACTTAGCAACCATTAAGCA+AGG | - | chr3_1:11680142-11680161 | Msa0348850:intron | 35.0% | |
| CAAGATGTATCCTTGCTTAA+TGG | + | chr3_1:11680155-11680174 | None:intergenic | 35.0% | |
| GGATACATCTTGTATTGAAC+AGG | - | chr3_1:11680163-11680182 | Msa0348850:intron | 35.0% | |
| AATGCATTCTAATTGAGGGT+TGG | - | chr3_1:11680351-11680370 | Msa0348850:intron | 35.0% | |
| TACATTTCAGCTGCCTTTAT+TGG | - | chr3_1:11680454-11680473 | Msa0348850:CDS | 35.0% | |
| TATCGTCTGTGGTTTCTTAT+TGG | + | chr3_1:11680584-11680603 | None:intergenic | 35.0% | |
| GCATAAGATTTCCGTAAGTT+TGG | + | chr3_1:11680861-11680880 | None:intergenic | 35.0% | |
| CTTACGGAAATCTTATGCAT+TGG | - | chr3_1:11680863-11680882 | Msa0348850:CDS | 35.0% | |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr3_1:11680946-11680965 | Msa0348850:CDS | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr3_1:11681016-11681035 | Msa0348850:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr3_1:11681017-11681036 | Msa0348850:CDS | 35.0% | |
| TGAATAAATGCAAAGCAAGC+TGG | + | chr3_1:11681141-11681160 | None:intergenic | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr3_1:11681142-11681161 | Msa0348850:CDS | 35.0% | |
| TCCAAAACATCAACATTGGA+AGG | + | chr3_1:11681303-11681322 | None:intergenic | 35.0% | |
| TGCATCCAAAACATCAACAT+TGG | + | chr3_1:11681307-11681326 | None:intergenic | 35.0% | |
| GTCTGCTTAATCCTAACAAC+AGG | - | chr3_1:11679263-11679282 | Msa0348850:CDS | 40.0% | |
| TGTCTTCTGCAACATCAACT+TGG | + | chr3_1:11679728-11679747 | None:intergenic | 40.0% | |
| !!! | CTAGCATTTTTTGGGCAGAT+GGG | - | chr3_1:11679751-11679770 | Msa0348850:CDS | 40.0% |
| TGTTCTGGCATGGATAGTAT+AGG | - | chr3_1:11679920-11679939 | Msa0348850:intron | 40.0% | |
| ! | TTTTGAACTGCCTAGTGTGT+AGG | - | chr3_1:11679953-11679972 | Msa0348850:intron | 40.0% |
| GAGCATTCTTATGATCAAGG+CGG | + | chr3_1:11680120-11680139 | None:intergenic | 40.0% | |
| GTACTAAAGATCGATCACAC+AGG | + | chr3_1:11680202-11680221 | None:intergenic | 40.0% | |
| ATTGAGTTTACTCACTGCTG+AGG | - | chr3_1:11680271-11680290 | Msa0348850:intron | 40.0% | |
| TGGTCTGTATATATCGTCTG+TGG | + | chr3_1:11680595-11680614 | None:intergenic | 40.0% | |
| ACAGACGATATATACAGACC+AGG | - | chr3_1:11680594-11680613 | Msa0348850:CDS | 40.0% | |
| ! | TTTTTCATGGGCTTTGCTCA+TGG | - | chr3_1:11680659-11680678 | Msa0348850:intron | 40.0% |
| !! | TTATGCATTGGTCTTCAGCT+TGG | - | chr3_1:11680875-11680894 | Msa0348850:CDS | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr3_1:11680876-11680895 | Msa0348850:CDS | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr3_1:11680982-11681001 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr3_1:11681192-11681211 | Msa0348850:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr3_1:11681193-11681212 | Msa0348850:CDS | 40.0% | |
| ! | GCCTTCCAATGTTGATGTTT+TGG | - | chr3_1:11681299-11681318 | Msa0348850:CDS | 40.0% |
| GTCTGCTTAATCCTAACAAC+AGG | - | chr3_1:11679263-11679282 | Msa0348850:CDS | 40.0% | |
| TGTCTTCTGCAACATCAACT+TGG | + | chr3_1:11679728-11679747 | None:intergenic | 40.0% | |
| !!! | CTAGCATTTTTTGGGCAGAT+GGG | - | chr3_1:11679751-11679770 | Msa0348850:CDS | 40.0% |
| TGTTCTGGCATGGATAGTAT+AGG | - | chr3_1:11679920-11679939 | Msa0348850:intron | 40.0% | |
| ! | TTTTGAACTGCCTAGTGTGT+AGG | - | chr3_1:11679953-11679972 | Msa0348850:intron | 40.0% |
| GAGCATTCTTATGATCAAGG+CGG | + | chr3_1:11680120-11680139 | None:intergenic | 40.0% | |
| GTACTAAAGATCGATCACAC+AGG | + | chr3_1:11680202-11680221 | None:intergenic | 40.0% | |
| ATTGAGTTTACTCACTGCTG+AGG | - | chr3_1:11680271-11680290 | Msa0348850:intron | 40.0% | |
| TGGTCTGTATATATCGTCTG+TGG | + | chr3_1:11680595-11680614 | None:intergenic | 40.0% | |
| ACAGACGATATATACAGACC+AGG | - | chr3_1:11680594-11680613 | Msa0348850:CDS | 40.0% | |
| ! | TTTTTCATGGGCTTTGCTCA+TGG | - | chr3_1:11680659-11680678 | Msa0348850:intron | 40.0% |
| !! | TTATGCATTGGTCTTCAGCT+TGG | - | chr3_1:11680875-11680894 | Msa0348850:CDS | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr3_1:11680876-11680895 | Msa0348850:CDS | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr3_1:11680982-11681001 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr3_1:11681192-11681211 | Msa0348850:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr3_1:11681193-11681212 | Msa0348850:CDS | 40.0% | |
| ! | GCCTTCCAATGTTGATGTTT+TGG | - | chr3_1:11681299-11681318 | Msa0348850:CDS | 40.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | - | chr3_1:11679331-11679350 | Msa0348850:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | + | chr3_1:11679340-11679359 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr3_1:11679343-11679362 | Msa0348850:CDS | 45.0% |
| CTCAGGTAACACAAATGCTC+TGG | + | chr3_1:11679451-11679470 | None:intergenic | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | - | chr3_1:11679553-11679572 | Msa0348850:CDS | 45.0% | |
| ! | GCACGGAGAATCTTCCTTTT+CGG | - | chr3_1:11679578-11679597 | Msa0348850:CDS | 45.0% |
| GACGATTCGTCAAAAGGAGA+TGG | - | chr3_1:11679627-11679646 | Msa0348850:CDS | 45.0% | |
| TCGTCAAAAGGAGATGGTGT+TGG | - | chr3_1:11679633-11679652 | Msa0348850:CDS | 45.0% | |
| !!! | GCTAGCATTTTTTGGGCAGA+TGG | - | chr3_1:11679750-11679769 | Msa0348850:CDS | 45.0% |
| CTGGCATGGATAGTATAGGT+AGG | - | chr3_1:11679924-11679943 | Msa0348850:intron | 45.0% | |
| CGATCACACAGGACAATTTC+TGG | + | chr3_1:11680191-11680210 | None:intergenic | 45.0% | |
| AATTCAACAACGCACTAGCC+TGG | + | chr3_1:11680615-11680634 | None:intergenic | 45.0% | |
| GAAGGCCTACTTCAGACTTT+AGG | - | chr3_1:11680827-11680846 | Msa0348850:CDS | 45.0% | |
| ! | AGCCACCTAAAGTCTGAAGT+AGG | + | chr3_1:11680835-11680854 | None:intergenic | 45.0% |
| ! | AGGTGGCTTGTCCAAACTTA+CGG | - | chr3_1:11680847-11680866 | Msa0348850:CDS | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | chr3_1:11681035-11681054 | Msa0348850:CDS | 45.0% | |
| ! | TCATGCTGAGTTGGACTTCA+AGG | - | chr3_1:11681044-11681063 | Msa0348850:CDS | 45.0% |
| ATCCCAACAGTCAACTGATG+CGG | - | chr3_1:11681094-11681113 | Msa0348850:CDS | 45.0% | |
| AACCGCATCAGTTGACTGTT+GGG | + | chr3_1:11681099-11681118 | None:intergenic | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | - | chr3_1:11679331-11679350 | Msa0348850:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | + | chr3_1:11679340-11679359 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr3_1:11679343-11679362 | Msa0348850:CDS | 45.0% |
| CTCAGGTAACACAAATGCTC+TGG | + | chr3_1:11679451-11679470 | None:intergenic | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | - | chr3_1:11679553-11679572 | Msa0348850:CDS | 45.0% | |
| ! | GCACGGAGAATCTTCCTTTT+CGG | - | chr3_1:11679578-11679597 | Msa0348850:CDS | 45.0% |
| GACGATTCGTCAAAAGGAGA+TGG | - | chr3_1:11679627-11679646 | Msa0348850:CDS | 45.0% | |
| TCGTCAAAAGGAGATGGTGT+TGG | - | chr3_1:11679633-11679652 | Msa0348850:CDS | 45.0% | |
| !!! | GCTAGCATTTTTTGGGCAGA+TGG | - | chr3_1:11679750-11679769 | Msa0348850:CDS | 45.0% |
| CTGGCATGGATAGTATAGGT+AGG | - | chr3_1:11679924-11679943 | Msa0348850:intron | 45.0% | |
| CGATCACACAGGACAATTTC+TGG | + | chr3_1:11680191-11680210 | None:intergenic | 45.0% | |
| AATTCAACAACGCACTAGCC+TGG | + | chr3_1:11680615-11680634 | None:intergenic | 45.0% | |
| GAAGGCCTACTTCAGACTTT+AGG | - | chr3_1:11680827-11680846 | Msa0348850:CDS | 45.0% | |
| ! | AGCCACCTAAAGTCTGAAGT+AGG | + | chr3_1:11680835-11680854 | None:intergenic | 45.0% |
| ! | AGGTGGCTTGTCCAAACTTA+CGG | - | chr3_1:11680847-11680866 | Msa0348850:CDS | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | chr3_1:11681035-11681054 | Msa0348850:CDS | 45.0% | |
| ! | TCATGCTGAGTTGGACTTCA+AGG | - | chr3_1:11681044-11681063 | Msa0348850:CDS | 45.0% |
| ATCCCAACAGTCAACTGATG+CGG | - | chr3_1:11681094-11681113 | Msa0348850:CDS | 45.0% | |
| AACCGCATCAGTTGACTGTT+GGG | + | chr3_1:11681099-11681118 | None:intergenic | 45.0% | |
| ! | TCTGACGTTGGCCTGTTGTT+AGG | + | chr3_1:11679277-11679296 | None:intergenic | 50.0% |
| GTTATGGGTCAAGGAGTTGG+AGG | - | chr3_1:11679556-11679575 | Msa0348850:CDS | 50.0% | |
| GACACACACACCTACACACT+AGG | + | chr3_1:11679966-11679985 | None:intergenic | 50.0% | |
| GGCCTACTTCAGACTTTAGG+TGG | - | chr3_1:11680830-11680849 | Msa0348850:CDS | 50.0% | |
| GAACCGCATCAGTTGACTGT+TGG | + | chr3_1:11681100-11681119 | None:intergenic | 50.0% | |
| ! | TCTGACGTTGGCCTGTTGTT+AGG | + | chr3_1:11679277-11679296 | None:intergenic | 50.0% |
| GTTATGGGTCAAGGAGTTGG+AGG | - | chr3_1:11679556-11679575 | Msa0348850:CDS | 50.0% | |
| GACACACACACCTACACACT+AGG | + | chr3_1:11679966-11679985 | None:intergenic | 50.0% | |
| GGCCTACTTCAGACTTTAGG+TGG | - | chr3_1:11680830-11680849 | Msa0348850:CDS | 50.0% | |
| GAACCGCATCAGTTGACTGT+TGG | + | chr3_1:11681100-11681119 | None:intergenic | 50.0% | |
| ACCACTGGACTGTCTGACGT+TGG | + | chr3_1:11679289-11679308 | None:intergenic | 55.0% | |
| TGGGCTTTGCTCATGGCACA+TGG | - | chr3_1:11680666-11680685 | Msa0348850:intron | 55.0% | |
| ACCACTGGACTGTCTGACGT+TGG | + | chr3_1:11679289-11679308 | None:intergenic | 55.0% | |
| TGGGCTTTGCTCATGGCACA+TGG | - | chr3_1:11680666-11680685 | Msa0348850:intron | 55.0% | |
| GCCAACGTCAGACAGTCCAG+TGG | - | chr3_1:11679285-11679304 | Msa0348850:CDS | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr3_1:11679561-11679580 | Msa0348850:CDS | 60.0% | |
| GCCAACGTCAGACAGTCCAG+TGG | - | chr3_1:11679285-11679304 | Msa0348850:CDS | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr3_1:11679561-11679580 | Msa0348850:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 11678974 | 11681335 | 11678974 | ID=Msa0348850;Name=Msa0348850 |
| chr3_1 | mRNA | 11678974 | 11681335 | 11678974 | ID=Msa0348850-mRNA-1;Parent=Msa0348850;Name=Msa0348850-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0.5|0|1|1|1|3|0|556 |
| chr3_1 | exon | 11680710 | 11681335 | 11680710 | ID=Msa0348850-mRNA-1:exon:3086;Parent=Msa0348850-mRNA-1 |
| chr3_1 | exon | 11680451 | 11680623 | 11680451 | ID=Msa0348850-mRNA-1:exon:3085;Parent=Msa0348850-mRNA-1 |
| chr3_1 | exon | 11678974 | 11679845 | 11678974 | ID=Msa0348850-mRNA-1:exon:3084;Parent=Msa0348850-mRNA-1 |
| chr3_1 | CDS | 11680710 | 11681335 | 11680710 | ID=Msa0348850-mRNA-1:cds;Parent=Msa0348850-mRNA-1 |
| chr3_1 | CDS | 11680451 | 11680623 | 11680451 | ID=Msa0348850-mRNA-1:cds;Parent=Msa0348850-mRNA-1 |
| chr3_1 | CDS | 11678974 | 11679845 | 11678974 | ID=Msa0348850-mRNA-1:cds;Parent=Msa0348850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
