Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0349370 | KEH43367.1 | 87.500 | 104 | 12 | 1 | 91 | 193 | 11 | 114 | 1.29e-54 | 187 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0349370 | sp|Q9XF67|PDPK1_ARATH | 60.479 | 167 | 53 | 4 | 28 | 193 | 78 | 232 | 5.08e-55 | 184 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0349370 | A0A072VNL2 | 87.500 | 104 | 12 | 1 | 91 | 193 | 11 | 114 | 6.16e-55 | 187 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0349370 | MtrunA17_Chr1g0197721 | 62.874 | 167 | 49 | 4 | 28 | 193 | 85 | 239 | 1.21e-57 | 188 |
Msa0349370 | MtrunA17_Chr7g0265341 | 92.308 | 52 | 4 | 0 | 1 | 52 | 177 | 228 | 7.85e-25 | 100 |
Msa0349370 | MtrunA17_Chr4g0013131 | 39.450 | 109 | 50 | 3 | 85 | 186 | 85 | 184 | 8.19e-17 | 77.8 |
Msa0349370 | MtrunA17_Chr1g0179701 | 65.385 | 52 | 18 | 0 | 1 | 52 | 169 | 220 | 9.91e-17 | 77.4 |
Msa0349370 | MtrunA17_Chr8g0379091 | 34.507 | 142 | 65 | 4 | 52 | 186 | 78 | 198 | 1.93e-16 | 76.6 |
Msa0349370 | MtrunA17_Chr5g0428031 | 35.526 | 152 | 71 | 6 | 51 | 190 | 53 | 189 | 2.64e-16 | 76.3 |
Msa0349370 | MtrunA17_Chr4g0074111 | 33.099 | 142 | 76 | 3 | 50 | 185 | 61 | 189 | 2.65e-16 | 75.9 |
Msa0349370 | MtrunA17_Chr3g0107051 | 36.885 | 122 | 61 | 3 | 71 | 185 | 80 | 192 | 3.31e-16 | 75.9 |
Msa0349370 | MtrunA17_Chr2g0284031 | 35.766 | 137 | 68 | 5 | 52 | 185 | 83 | 202 | 6.09e-16 | 75.1 |
Msa0349370 | MtrunA17_Chr2g0304111 | 38.017 | 121 | 56 | 4 | 69 | 187 | 94 | 197 | 6.62e-16 | 75.1 |
Msa0349370 | MtrunA17_Chr4g0001331 | 32.867 | 143 | 75 | 4 | 50 | 185 | 63 | 191 | 7.46e-16 | 74.7 |
Msa0349370 | MtrunA17_Chr8g0346081 | 36.054 | 147 | 64 | 7 | 51 | 186 | 61 | 188 | 1.03e-15 | 74.3 |
Msa0349370 | MtrunA17_Chr1g0188031 | 34.146 | 123 | 63 | 3 | 67 | 188 | 91 | 196 | 1.26e-15 | 73.9 |
Msa0349370 | MtrunA17_Chr7g0244521 | 34.756 | 164 | 77 | 6 | 35 | 186 | 39 | 184 | 1.29e-15 | 74.3 |
Msa0349370 | MtrunA17_Chr6g0468751 | 35.659 | 129 | 76 | 2 | 63 | 184 | 70 | 198 | 2.52e-15 | 73.6 |
Msa0349370 | MtrunA17_Chr6g0453681 | 35.659 | 129 | 76 | 2 | 63 | 184 | 70 | 198 | 2.62e-15 | 73.2 |
Msa0349370 | MtrunA17_Chr8g0346071 | 34.722 | 144 | 68 | 6 | 50 | 186 | 64 | 188 | 2.85e-15 | 73.2 |
Msa0349370 | MtrunA17_Chr4g0030361 | 37.383 | 107 | 51 | 2 | 100 | 191 | 406 | 511 | 6.30e-15 | 72.4 |
Msa0349370 | MtrunA17_Chr4g0059751 | 33.721 | 86 | 46 | 1 | 100 | 185 | 191 | 265 | 6.86e-15 | 72.0 |
Msa0349370 | MtrunA17_Chr3g0132671 | 36.842 | 95 | 59 | 1 | 91 | 184 | 134 | 228 | 2.31e-14 | 70.5 |
Msa0349370 | MtrunA17_Chr2g0333821 | 37.500 | 96 | 50 | 2 | 91 | 185 | 99 | 185 | 2.36e-14 | 70.5 |
Msa0349370 | MtrunA17_Chr8g0369091 | 37.391 | 115 | 55 | 3 | 88 | 185 | 684 | 798 | 2.43e-14 | 70.9 |
Msa0349370 | MtrunA17_Chr4g0044541 | 62.745 | 51 | 19 | 0 | 2 | 52 | 142 | 192 | 2.67e-14 | 70.5 |
Msa0349370 | MtrunA17_Chr3g0107011 | 31.746 | 126 | 66 | 3 | 63 | 185 | 77 | 185 | 2.88e-14 | 70.1 |
Msa0349370 | MtrunA17_Chr3g0134141 | 64.706 | 51 | 18 | 0 | 2 | 52 | 132 | 182 | 3.48e-14 | 70.1 |
Msa0349370 | MtrunA17_Chr2g0284011 | 35.417 | 96 | 54 | 1 | 91 | 186 | 97 | 184 | 5.88e-14 | 69.3 |
Msa0349370 | MtrunA17_Chr5g0432491 | 34.167 | 120 | 62 | 3 | 67 | 185 | 92 | 195 | 7.14e-14 | 68.9 |
Msa0349370 | MtrunA17_Chr7g0261491 | 34.711 | 121 | 49 | 2 | 95 | 185 | 210 | 330 | 7.47e-14 | 69.3 |
Msa0349370 | MtrunA17_Chr4g0063881 | 33.557 | 149 | 71 | 6 | 50 | 188 | 54 | 184 | 7.62e-14 | 68.9 |
Msa0349370 | MtrunA17_Chr7g0245031 | 29.771 | 131 | 73 | 4 | 58 | 185 | 203 | 317 | 8.33e-14 | 68.9 |
Msa0349370 | MtrunA17_Chr1g0167311 | 33.051 | 118 | 47 | 2 | 100 | 185 | 210 | 327 | 1.56e-13 | 68.2 |
Msa0349370 | MtrunA17_Chr5g0441011 | 35.246 | 122 | 60 | 4 | 67 | 186 | 82 | 186 | 2.07e-13 | 67.8 |
Msa0349370 | MtrunA17_Chr8g0353621 | 32.143 | 168 | 81 | 7 | 51 | 192 | 54 | 214 | 2.09e-13 | 67.0 |
Msa0349370 | MtrunA17_Chr3g0091421 | 30.811 | 185 | 98 | 6 | 11 | 188 | 24 | 185 | 2.11e-13 | 66.6 |
Msa0349370 | MtrunA17_Chr1g0183651 | 33.058 | 121 | 51 | 2 | 95 | 185 | 210 | 330 | 2.20e-13 | 67.8 |
Msa0349370 | MtrunA17_Chr1g0153181 | 58.824 | 51 | 21 | 0 | 2 | 52 | 140 | 190 | 2.44e-13 | 67.8 |
Msa0349370 | MtrunA17_Chr1g0205421 | 33.613 | 119 | 63 | 2 | 67 | 185 | 81 | 183 | 2.51e-13 | 67.4 |
Msa0349370 | MtrunA17_Chr3g0125381 | 33.871 | 124 | 64 | 3 | 64 | 187 | 19 | 124 | 3.04e-13 | 65.9 |
Msa0349370 | MtrunA17_Chr1g0190131 | 29.570 | 186 | 110 | 5 | 9 | 185 | 5 | 178 | 3.75e-13 | 66.2 |
Msa0349370 | MtrunA17_Chr1g0150321 | 36.082 | 97 | 52 | 2 | 91 | 186 | 98 | 185 | 4.73e-13 | 66.6 |
Msa0349370 | MtrunA17_Chr3g0114511 | 34.014 | 147 | 77 | 4 | 44 | 186 | 72 | 202 | 5.06e-13 | 66.6 |
Msa0349370 | MtrunA17_Chr2g0309421 | 56.250 | 48 | 21 | 0 | 100 | 147 | 274 | 321 | 5.67e-13 | 66.6 |
Msa0349370 | MtrunA17_Chr2g0285711 | 52.941 | 51 | 24 | 0 | 97 | 147 | 183 | 233 | 1.00e-12 | 65.9 |
Msa0349370 | MtrunA17_Chr8g0381091 | 32.593 | 135 | 43 | 3 | 98 | 184 | 180 | 314 | 1.53e-12 | 65.1 |
Msa0349370 | MtrunA17_Chr6g0478601 | 43.590 | 78 | 37 | 2 | 100 | 177 | 206 | 276 | 2.16e-12 | 64.7 |
Msa0349370 | MtrunA17_Chr3g0091311 | 31.126 | 151 | 81 | 4 | 44 | 188 | 52 | 185 | 2.26e-12 | 63.9 |
Msa0349370 | MtrunA17_Chr7g0234641 | 48.276 | 58 | 30 | 0 | 90 | 147 | 107 | 164 | 2.28e-12 | 64.7 |
Msa0349370 | MtrunA17_Chr4g0018201 | 57.143 | 49 | 21 | 0 | 100 | 148 | 854 | 902 | 2.40e-12 | 65.1 |
Msa0349370 | MtrunA17_Chr2g0312641 | 54.000 | 50 | 23 | 0 | 98 | 147 | 191 | 240 | 2.41e-12 | 64.7 |
Msa0349370 | MtrunA17_Chr1g0167351 | 50.847 | 59 | 29 | 0 | 100 | 158 | 205 | 263 | 3.30e-12 | 64.3 |
Msa0349370 | MtrunA17_Chr3g0091291 | 34.454 | 119 | 61 | 2 | 67 | 185 | 29 | 130 | 3.62e-12 | 62.8 |
Msa0349370 | MtrunA17_Chr5g0428981 | 55.102 | 49 | 22 | 0 | 100 | 148 | 858 | 906 | 4.24e-12 | 64.3 |
Msa0349370 | MtrunA17_Chr5g0432471 | 30.952 | 126 | 67 | 3 | 63 | 185 | 75 | 183 | 4.42e-12 | 63.9 |
Msa0349370 | MtrunA17_Chr2g0327561 | 32.520 | 123 | 68 | 3 | 35 | 147 | 655 | 772 | 4.69e-12 | 63.9 |
Msa0349370 | MtrunA17_Chr4g0072831 | 39.024 | 82 | 43 | 1 | 74 | 148 | 51 | 132 | 4.79e-12 | 63.5 |
Msa0349370 | MtrunA17_Chr8g0351491 | 38.710 | 93 | 42 | 2 | 97 | 188 | 108 | 186 | 6.13e-12 | 62.8 |
Msa0349370 | MtrunA17_Chr1g0166101 | 31.667 | 120 | 64 | 3 | 67 | 185 | 94 | 196 | 7.08e-12 | 63.2 |
Msa0349370 | MtrunA17_Chr8g0335351 | 39.362 | 94 | 45 | 2 | 106 | 192 | 475 | 563 | 7.83e-12 | 63.2 |
Msa0349370 | MtrunA17_Chr1g0201151 | 52.941 | 51 | 24 | 0 | 2 | 52 | 138 | 188 | 8.71e-12 | 63.2 |
Msa0349370 | MtrunA17_Chr2g0321101 | 51.020 | 49 | 24 | 0 | 99 | 147 | 190 | 238 | 1.09e-11 | 62.8 |
Msa0349370 | MtrunA17_Chr6g0453671 | 35.514 | 107 | 62 | 2 | 85 | 184 | 92 | 198 | 1.16e-11 | 62.4 |
Msa0349370 | MtrunA17_Chr3g0091281 | 33.103 | 145 | 73 | 4 | 50 | 188 | 59 | 185 | 1.26e-11 | 61.6 |
Msa0349370 | MtrunA17_Chr5g0399911 | 33.103 | 145 | 72 | 7 | 46 | 186 | 64 | 187 | 1.44e-11 | 62.4 |
Msa0349370 | MtrunA17_Chr6g0449401 | 32.787 | 122 | 78 | 1 | 26 | 147 | 329 | 446 | 1.53e-11 | 62.4 |
Msa0349370 | MtrunA17_Chr3g0129721 | 33.333 | 159 | 74 | 8 | 39 | 185 | 58 | 196 | 1.63e-11 | 61.6 |
Msa0349370 | MtrunA17_Chr7g0250631 | 37.500 | 88 | 54 | 1 | 106 | 192 | 469 | 556 | 2.06e-11 | 62.0 |
Msa0349370 | MtrunA17_Chr1g0187581 | 32.990 | 97 | 58 | 1 | 69 | 158 | 174 | 270 | 2.12e-11 | 62.0 |
Msa0349370 | MtrunA17_Chr6g0465751 | 52.941 | 51 | 24 | 0 | 2 | 52 | 133 | 183 | 2.43e-11 | 62.0 |
Msa0349370 | MtrunA17_Chr6g0466501 | 52.941 | 51 | 24 | 0 | 2 | 52 | 133 | 183 | 2.80e-11 | 61.6 |
Msa0349370 | MtrunA17_Chr3g0080101 | 38.372 | 86 | 49 | 2 | 62 | 147 | 480 | 561 | 2.87e-11 | 61.6 |
Msa0349370 | MtrunA17_Chr5g0424531 | 30.769 | 104 | 60 | 3 | 90 | 193 | 101 | 192 | 2.95e-11 | 60.8 |
Msa0349370 | MtrunA17_Chr6g0465691 | 52.941 | 51 | 24 | 0 | 2 | 52 | 51 | 101 | 3.25e-11 | 61.6 |
Msa0349370 | MtrunA17_Chr2g0299781 | 46.667 | 60 | 32 | 0 | 100 | 159 | 208 | 267 | 3.32e-11 | 61.2 |
Msa0349370 | MtrunA17_Chr0c09g0493511 | 52.941 | 51 | 24 | 0 | 2 | 52 | 51 | 101 | 3.32e-11 | 61.2 |
Msa0349370 | MtrunA17_Chr8g0338741 | 50.000 | 48 | 24 | 0 | 100 | 147 | 127 | 174 | 3.71e-11 | 61.2 |
Msa0349370 | MtrunA17_Chr4g0061141 | 34.259 | 108 | 55 | 2 | 85 | 185 | 179 | 277 | 3.83e-11 | 61.2 |
Msa0349370 | MtrunA17_Chr1g0179101 | 53.191 | 47 | 22 | 0 | 101 | 147 | 570 | 616 | 5.18e-11 | 60.8 |
Msa0349370 | MtrunA17_Chr7g0227331 | 52.083 | 48 | 23 | 0 | 100 | 147 | 331 | 378 | 5.33e-11 | 60.8 |
Msa0349370 | MtrunA17_Chr7g0266031 | 59.524 | 42 | 17 | 0 | 106 | 147 | 597 | 638 | 5.55e-11 | 60.8 |
Msa0349370 | MtrunA17_Chr3g0135951 | 50.000 | 54 | 27 | 0 | 100 | 153 | 189 | 242 | 6.65e-11 | 60.5 |
Msa0349370 | MtrunA17_Chr8g0356291 | 45.833 | 48 | 26 | 0 | 100 | 147 | 226 | 273 | 7.59e-11 | 60.5 |
Msa0349370 | MtrunA17_Chr7g0248461 | 40.000 | 70 | 36 | 2 | 85 | 148 | 115 | 184 | 8.48e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0349370 | AT5G04510.3 | 60.479 | 167 | 53 | 4 | 28 | 193 | 78 | 232 | 4.32e-58 | 185 |
Msa0349370 | AT5G04510.2 | 60.479 | 167 | 53 | 4 | 28 | 193 | 78 | 232 | 1.62e-56 | 184 |
Msa0349370 | AT5G04510.1 | 60.479 | 167 | 53 | 4 | 28 | 193 | 78 | 232 | 5.16e-56 | 184 |
Msa0349370 | AT3G10540.1 | 59.880 | 167 | 54 | 4 | 28 | 193 | 79 | 233 | 1.78e-55 | 183 |
Msa0349370 | AT1G29230.1 | 31.325 | 166 | 78 | 5 | 40 | 186 | 98 | 246 | 4.47e-18 | 81.6 |
Msa0349370 | AT4G24400.1 | 35.616 | 146 | 66 | 6 | 51 | 186 | 53 | 180 | 7.69e-17 | 78.2 |
Msa0349370 | AT4G24400.2 | 35.616 | 146 | 66 | 6 | 51 | 186 | 53 | 180 | 8.49e-17 | 77.8 |
Msa0349370 | AT5G25110.1 | 36.301 | 146 | 66 | 5 | 50 | 185 | 86 | 214 | 1.17e-16 | 77.8 |
Msa0349370 | AT5G10930.1 | 36.735 | 147 | 66 | 5 | 50 | 186 | 56 | 185 | 1.46e-16 | 77.4 |
Msa0349370 | AT2G26980.1 | 35.762 | 151 | 63 | 7 | 50 | 186 | 57 | 187 | 2.48e-16 | 76.3 |
Msa0349370 | AT2G26980.2 | 35.762 | 151 | 63 | 7 | 50 | 186 | 57 | 187 | 2.50e-16 | 75.1 |
Msa0349370 | AT2G26980.4 | 35.762 | 151 | 63 | 7 | 50 | 186 | 67 | 197 | 2.76e-16 | 76.6 |
Msa0349370 | AT2G26980.3 | 35.762 | 151 | 63 | 7 | 50 | 186 | 57 | 187 | 2.84e-16 | 76.3 |
Msa0349370 | AT2G26980.5 | 35.762 | 151 | 63 | 7 | 50 | 186 | 57 | 187 | 3.19e-16 | 76.3 |
Msa0349370 | AT5G45810.1 | 34.307 | 137 | 70 | 3 | 52 | 185 | 80 | 199 | 3.21e-16 | 76.3 |
Msa0349370 | AT4G18700.1 | 35.766 | 137 | 68 | 5 | 52 | 185 | 78 | 197 | 5.48e-16 | 75.5 |
Msa0349370 | AT5G58140.3 | 36.522 | 115 | 56 | 2 | 88 | 185 | 662 | 776 | 8.78e-16 | 75.1 |
Msa0349370 | AT5G58140.6 | 36.522 | 115 | 56 | 2 | 88 | 185 | 662 | 776 | 8.81e-16 | 75.1 |
Msa0349370 | AT5G58140.7 | 36.522 | 115 | 56 | 2 | 88 | 185 | 662 | 776 | 8.81e-16 | 75.1 |
Msa0349370 | AT5G58140.5 | 36.522 | 115 | 56 | 2 | 88 | 185 | 662 | 776 | 8.81e-16 | 75.1 |
Msa0349370 | AT5G58140.2 | 36.522 | 115 | 56 | 2 | 88 | 185 | 662 | 776 | 8.81e-16 | 75.1 |
Msa0349370 | AT5G58140.1 | 36.522 | 115 | 56 | 2 | 88 | 185 | 662 | 776 | 8.81e-16 | 75.1 |
Msa0349370 | AT5G01810.1 | 35.593 | 118 | 59 | 3 | 71 | 188 | 86 | 186 | 1.09e-15 | 74.7 |
Msa0349370 | AT5G01810.2 | 35.593 | 118 | 59 | 3 | 71 | 188 | 86 | 186 | 1.09e-15 | 74.7 |
Msa0349370 | AT5G01810.3 | 35.593 | 118 | 59 | 3 | 71 | 188 | 86 | 186 | 1.24e-15 | 74.3 |
Msa0349370 | AT2G34180.1 | 30.952 | 168 | 84 | 6 | 32 | 186 | 81 | 229 | 1.34e-15 | 74.7 |
Msa0349370 | AT1G22760.1 | 68.627 | 51 | 16 | 0 | 2 | 52 | 156 | 206 | 1.76e-15 | 74.3 |
Msa0349370 | AT1G30270.1 | 36.154 | 130 | 60 | 6 | 63 | 187 | 94 | 205 | 2.16e-15 | 73.9 |
Msa0349370 | AT1G30270.3 | 37.815 | 119 | 54 | 4 | 71 | 187 | 8 | 108 | 2.19e-15 | 73.6 |
Msa0349370 | AT1G30270.2 | 36.154 | 130 | 60 | 6 | 63 | 187 | 94 | 205 | 2.42e-15 | 73.9 |
Msa0349370 | AT3G29160.3 | 39.252 | 107 | 58 | 2 | 85 | 184 | 93 | 199 | 3.54e-15 | 72.8 |
Msa0349370 | AT3G29160.1 | 39.252 | 107 | 58 | 2 | 85 | 184 | 93 | 199 | 4.38e-15 | 73.2 |
Msa0349370 | AT3G29160.2 | 39.252 | 107 | 58 | 2 | 85 | 184 | 93 | 199 | 4.38e-15 | 73.2 |
Msa0349370 | AT4G30960.1 | 41.053 | 95 | 48 | 2 | 91 | 185 | 109 | 195 | 5.25e-15 | 72.8 |
Msa0349370 | AT5G35410.2 | 36.129 | 155 | 69 | 7 | 42 | 186 | 48 | 182 | 5.33e-15 | 72.4 |
Msa0349370 | AT5G35410.1 | 36.129 | 155 | 69 | 7 | 42 | 186 | 48 | 182 | 5.71e-15 | 72.8 |
Msa0349370 | AT5G21326.1 | 34.459 | 148 | 69 | 6 | 50 | 186 | 56 | 186 | 5.87e-15 | 72.8 |
Msa0349370 | AT5G45820.1 | 30.000 | 150 | 87 | 3 | 46 | 185 | 42 | 183 | 8.30e-15 | 72.0 |
Msa0349370 | AT1G71770.1 | 66.667 | 51 | 17 | 0 | 2 | 52 | 166 | 216 | 8.91e-15 | 72.4 |
Msa0349370 | AT1G71770.2 | 66.667 | 51 | 17 | 0 | 2 | 52 | 166 | 216 | 8.91e-15 | 72.4 |
Msa0349370 | AT2G36660.1 | 65.385 | 52 | 18 | 0 | 1 | 52 | 131 | 182 | 1.07e-14 | 72.0 |
Msa0349370 | AT3G01090.3 | 38.542 | 96 | 58 | 1 | 90 | 184 | 103 | 198 | 1.30e-14 | 71.6 |
Msa0349370 | AT3G01090.1 | 38.542 | 96 | 58 | 1 | 90 | 184 | 103 | 198 | 1.30e-14 | 71.6 |
Msa0349370 | AT3G01090.2 | 38.542 | 96 | 58 | 1 | 90 | 184 | 126 | 221 | 1.36e-14 | 71.6 |
Msa0349370 | AT1G01140.2 | 37.705 | 122 | 57 | 5 | 67 | 186 | 88 | 192 | 2.49e-14 | 70.9 |
Msa0349370 | AT1G01140.1 | 37.705 | 122 | 57 | 5 | 67 | 186 | 88 | 192 | 2.55e-14 | 70.9 |
Msa0349370 | AT1G01140.3 | 37.705 | 122 | 57 | 5 | 67 | 186 | 88 | 192 | 2.67e-14 | 70.9 |
Msa0349370 | AT4G14350.3 | 36.885 | 122 | 46 | 3 | 95 | 185 | 209 | 330 | 2.78e-14 | 70.9 |
Msa0349370 | AT4G14350.2 | 36.885 | 122 | 46 | 3 | 95 | 185 | 209 | 330 | 2.94e-14 | 70.9 |
Msa0349370 | AT4G14350.1 | 36.885 | 122 | 46 | 3 | 95 | 185 | 209 | 330 | 2.94e-14 | 70.9 |
Msa0349370 | AT4G14350.4 | 36.885 | 122 | 46 | 3 | 95 | 185 | 209 | 330 | 2.94e-14 | 70.9 |
Msa0349370 | AT2G45490.2 | 34.014 | 147 | 66 | 5 | 51 | 187 | 66 | 191 | 4.57e-14 | 68.9 |
Msa0349370 | AT3G23000.1 | 32.231 | 121 | 64 | 3 | 67 | 186 | 95 | 198 | 4.78e-14 | 70.1 |
Msa0349370 | AT2G45490.1 | 34.014 | 147 | 66 | 5 | 51 | 187 | 66 | 191 | 6.27e-14 | 68.9 |
Msa0349370 | AT2G25090.1 | 40.404 | 99 | 57 | 2 | 90 | 187 | 100 | 197 | 6.95e-14 | 69.7 |
Msa0349370 | AT2G38490.1 | 34.454 | 119 | 62 | 4 | 67 | 185 | 97 | 199 | 6.96e-14 | 69.3 |
Msa0349370 | AT3G23310.1 | 34.677 | 124 | 48 | 2 | 95 | 185 | 210 | 333 | 7.56e-14 | 69.7 |
Msa0349370 | AT2G30360.1 | 39.175 | 97 | 50 | 4 | 91 | 186 | 107 | 195 | 1.14e-13 | 68.9 |
Msa0349370 | AT3G12690.1 | 50.000 | 60 | 30 | 0 | 88 | 147 | 270 | 329 | 1.36e-13 | 68.9 |
Msa0349370 | AT3G12690.3 | 50.000 | 60 | 30 | 0 | 88 | 147 | 270 | 329 | 1.36e-13 | 68.9 |
Msa0349370 | AT3G12690.2 | 50.000 | 60 | 30 | 0 | 88 | 147 | 270 | 329 | 1.36e-13 | 68.9 |
Msa0349370 | AT1G03920.2 | 50.000 | 64 | 32 | 0 | 95 | 158 | 114 | 177 | 1.77e-13 | 68.6 |
Msa0349370 | AT2G20470.2 | 26.702 | 191 | 95 | 4 | 40 | 185 | 143 | 333 | 1.85e-13 | 68.6 |
Msa0349370 | AT2G20470.1 | 26.702 | 191 | 95 | 4 | 40 | 185 | 143 | 333 | 1.85e-13 | 68.6 |
Msa0349370 | AT2G20470.3 | 26.702 | 191 | 95 | 4 | 40 | 185 | 143 | 333 | 2.04e-13 | 68.2 |
Msa0349370 | AT1G03920.1 | 50.000 | 64 | 32 | 0 | 95 | 158 | 227 | 290 | 2.29e-13 | 68.2 |
Msa0349370 | AT1G03920.3 | 50.000 | 64 | 32 | 0 | 95 | 158 | 227 | 290 | 2.29e-13 | 68.2 |
Msa0349370 | AT5G62310.1 | 32.558 | 129 | 66 | 5 | 57 | 179 | 808 | 921 | 2.66e-13 | 68.2 |
Msa0349370 | AT1G30640.2 | 53.704 | 54 | 25 | 0 | 95 | 148 | 210 | 263 | 3.21e-13 | 67.8 |
Msa0349370 | AT1G30640.1 | 53.704 | 54 | 25 | 0 | 95 | 148 | 210 | 263 | 3.21e-13 | 67.8 |
Msa0349370 | AT1G30640.3 | 53.704 | 54 | 25 | 0 | 95 | 148 | 117 | 170 | 3.49e-13 | 67.4 |
Msa0349370 | AT1G49760.1 | 58.824 | 51 | 21 | 0 | 2 | 52 | 153 | 203 | 3.87e-13 | 67.4 |
Msa0349370 | AT1G49760.2 | 58.824 | 51 | 21 | 0 | 2 | 52 | 153 | 203 | 3.87e-13 | 67.4 |
Msa0349370 | AT3G17850.1 | 44.872 | 78 | 36 | 2 | 100 | 177 | 977 | 1047 | 4.68e-13 | 67.4 |
Msa0349370 | AT4G14580.1 | 35.000 | 100 | 48 | 4 | 91 | 185 | 107 | 194 | 4.74e-13 | 67.0 |
Msa0349370 | AT5G21222.1 | 32.653 | 147 | 73 | 5 | 50 | 186 | 56 | 186 | 6.03e-13 | 67.0 |
Msa0349370 | AT5G21222.2 | 32.653 | 147 | 73 | 5 | 50 | 186 | 56 | 186 | 6.03e-13 | 67.0 |
Msa0349370 | AT5G21222.4 | 32.653 | 147 | 73 | 5 | 50 | 186 | 56 | 186 | 6.03e-13 | 67.0 |
Msa0349370 | AT5G21222.3 | 32.653 | 147 | 73 | 5 | 50 | 186 | 56 | 186 | 6.03e-13 | 67.0 |
Msa0349370 | AT1G79250.1 | 38.372 | 86 | 49 | 1 | 62 | 147 | 209 | 290 | 6.23e-13 | 67.0 |
Msa0349370 | AT1G79250.3 | 38.372 | 86 | 49 | 1 | 62 | 147 | 209 | 290 | 6.23e-13 | 67.0 |
Msa0349370 | AT1G79250.2 | 38.372 | 86 | 49 | 1 | 62 | 147 | 209 | 290 | 6.23e-13 | 67.0 |
Msa0349370 | AT1G79250.4 | 38.372 | 86 | 49 | 1 | 62 | 147 | 209 | 290 | 6.23e-13 | 67.0 |
Msa0349370 | AT4G34110.1 | 58.824 | 51 | 21 | 0 | 2 | 52 | 144 | 194 | 6.26e-13 | 67.0 |
Msa0349370 | AT5G39440.1 | 35.577 | 104 | 60 | 2 | 85 | 181 | 92 | 195 | 1.00e-12 | 66.2 |
Msa0349370 | AT5G58380.1 | 30.612 | 147 | 75 | 5 | 50 | 186 | 55 | 184 | 1.97e-12 | 65.5 |
Msa0349370 | AT5G57565.5 | 29.921 | 127 | 67 | 5 | 69 | 184 | 11 | 126 | 1.98e-12 | 62.4 |
Msa0349370 | AT5G57565.1 | 29.921 | 127 | 67 | 5 | 69 | 184 | 11 | 126 | 1.98e-12 | 62.4 |
Msa0349370 | AT2G34650.1 | 55.102 | 49 | 22 | 0 | 99 | 147 | 176 | 224 | 2.48e-12 | 65.1 |
Msa0349370 | AT1G16440.1 | 38.372 | 86 | 49 | 2 | 62 | 147 | 178 | 259 | 2.54e-12 | 65.1 |
Msa0349370 | AT3G08730.1 | 27.481 | 131 | 76 | 4 | 58 | 185 | 189 | 303 | 2.99e-12 | 64.7 |
Msa0349370 | AT3G08730.2 | 27.481 | 131 | 76 | 4 | 58 | 185 | 189 | 303 | 2.99e-12 | 64.7 |
Msa0349370 | AT1G48490.3 | 55.102 | 49 | 22 | 0 | 100 | 148 | 923 | 971 | 3.63e-12 | 64.7 |
Msa0349370 | AT1G48490.2 | 55.102 | 49 | 22 | 0 | 100 | 148 | 923 | 971 | 3.63e-12 | 64.7 |
Msa0349370 | AT1G48490.1 | 55.102 | 49 | 22 | 0 | 100 | 148 | 923 | 971 | 3.63e-12 | 64.7 |
Msa0349370 | AT1G48490.4 | 55.102 | 49 | 22 | 0 | 100 | 148 | 924 | 972 | 3.63e-12 | 64.7 |
Msa0349370 | AT3G45780.2 | 48.333 | 60 | 31 | 0 | 88 | 147 | 748 | 807 | 3.64e-12 | 64.7 |
Msa0349370 | AT3G45780.1 | 48.333 | 60 | 31 | 0 | 88 | 147 | 748 | 807 | 3.64e-12 | 64.7 |
Msa0349370 | AT1G48260.1 | 31.613 | 155 | 84 | 4 | 37 | 185 | 45 | 183 | 3.65e-12 | 64.7 |
Msa0349370 | AT5G57630.1 | 28.169 | 142 | 76 | 5 | 50 | 185 | 59 | 180 | 4.28e-12 | 64.3 |
Msa0349370 | AT5G57630.2 | 28.169 | 142 | 76 | 5 | 50 | 185 | 59 | 180 | 4.47e-12 | 64.3 |
Msa0349370 | AT2G26700.1 | 51.020 | 49 | 24 | 0 | 99 | 147 | 185 | 233 | 6.62e-12 | 63.9 |
Msa0349370 | AT1G07880.1 | 32.743 | 113 | 60 | 3 | 85 | 191 | 110 | 212 | 8.98e-12 | 62.4 |
Msa0349370 | AT3G08720.1 | 27.481 | 131 | 76 | 4 | 58 | 185 | 195 | 309 | 1.02e-11 | 63.2 |
Msa0349370 | AT3G08720.3 | 27.481 | 131 | 76 | 4 | 58 | 185 | 195 | 309 | 1.02e-11 | 63.2 |
Msa0349370 | AT3G08720.4 | 27.481 | 131 | 76 | 4 | 58 | 185 | 195 | 309 | 1.02e-11 | 63.2 |
Msa0349370 | AT3G08720.2 | 27.481 | 131 | 76 | 4 | 58 | 185 | 195 | 309 | 1.02e-11 | 63.2 |
Msa0349370 | AT2G44830.2 | 61.905 | 42 | 16 | 0 | 106 | 147 | 466 | 507 | 1.05e-11 | 63.5 |
Msa0349370 | AT2G44830.3 | 61.905 | 42 | 16 | 0 | 106 | 147 | 466 | 507 | 1.05e-11 | 63.5 |
Msa0349370 | AT2G44830.1 | 61.905 | 42 | 16 | 0 | 106 | 147 | 466 | 507 | 1.05e-11 | 63.5 |
Msa0349370 | AT5G55910.2 | 48.980 | 49 | 25 | 0 | 99 | 147 | 205 | 253 | 1.17e-11 | 63.2 |
Msa0349370 | AT5G55910.1 | 48.980 | 49 | 25 | 0 | 99 | 147 | 205 | 253 | 1.17e-11 | 63.2 |
Msa0349370 | AT3G17510.1 | 31.847 | 157 | 83 | 5 | 36 | 185 | 53 | 192 | 1.18e-11 | 63.2 |
Msa0349370 | AT1G18350.1 | 32.258 | 93 | 53 | 2 | 96 | 188 | 133 | 215 | 1.24e-11 | 62.4 |
Msa0349370 | AT5G57565.2 | 35.165 | 91 | 48 | 3 | 69 | 148 | 11 | 101 | 1.29e-11 | 59.7 |
Msa0349370 | AT5G57565.6 | 35.165 | 91 | 48 | 3 | 69 | 148 | 11 | 101 | 1.29e-11 | 59.7 |
Msa0349370 | AT4G33080.1 | 51.852 | 54 | 26 | 0 | 100 | 153 | 189 | 242 | 1.29e-11 | 63.2 |
Msa0349370 | AT5G57565.4 | 29.365 | 126 | 67 | 5 | 69 | 183 | 11 | 125 | 1.31e-11 | 60.8 |
Msa0349370 | AT4G33080.2 | 51.852 | 54 | 26 | 0 | 100 | 153 | 189 | 242 | 1.31e-11 | 63.2 |
Msa0349370 | AT1G53700.1 | 46.667 | 60 | 32 | 0 | 88 | 147 | 179 | 238 | 1.37e-11 | 62.8 |
Msa0349370 | AT2G36350.1 | 55.319 | 47 | 21 | 0 | 101 | 147 | 657 | 703 | 1.73e-11 | 62.8 |
Msa0349370 | AT5G57630.3 | 30.337 | 89 | 51 | 2 | 97 | 185 | 15 | 92 | 1.73e-11 | 62.4 |
Msa0349370 | AT5G09890.2 | 43.548 | 62 | 35 | 0 | 100 | 161 | 197 | 258 | 2.04e-11 | 62.4 |
Msa0349370 | AT5G09890.1 | 43.548 | 62 | 35 | 0 | 100 | 161 | 197 | 258 | 2.14e-11 | 62.4 |
Msa0349370 | AT3G14370.1 | 45.000 | 60 | 33 | 0 | 88 | 147 | 173 | 232 | 2.34e-11 | 62.4 |
Msa0349370 | AT3G44610.1 | 40.260 | 77 | 38 | 2 | 99 | 167 | 175 | 251 | 2.61e-11 | 62.0 |
Msa0349370 | AT4G26610.1 | 46.939 | 49 | 26 | 0 | 99 | 147 | 219 | 267 | 3.29e-11 | 61.6 |
Msa0349370 | AT1G07880.2 | 32.743 | 113 | 60 | 3 | 85 | 191 | 110 | 212 | 4.22e-11 | 61.2 |
Msa0349370 | AT2G19400.1 | 37.363 | 91 | 49 | 1 | 71 | 161 | 179 | 261 | 4.22e-11 | 61.6 |
Msa0349370 | AT2G46070.2 | 32.609 | 92 | 56 | 2 | 85 | 170 | 118 | 209 | 4.61e-11 | 60.8 |
Msa0349370 | AT5G03640.2 | 61.905 | 42 | 16 | 0 | 106 | 147 | 644 | 685 | 4.67e-11 | 61.6 |
Msa0349370 | AT5G03640.1 | 61.905 | 42 | 16 | 0 | 106 | 147 | 644 | 685 | 4.67e-11 | 61.6 |
Msa0349370 | AT1G73500.1 | 30.469 | 128 | 71 | 5 | 63 | 183 | 96 | 212 | 6.24e-11 | 60.5 |
Msa0349370 | AT1G45160.1 | 53.061 | 49 | 23 | 0 | 100 | 148 | 765 | 813 | 6.37e-11 | 61.2 |
Msa0349370 | AT2G46070.1 | 32.609 | 92 | 56 | 2 | 85 | 170 | 118 | 209 | 6.48e-11 | 60.8 |
Msa0349370 | AT4G11330.1 | 35.652 | 115 | 54 | 5 | 85 | 191 | 120 | 222 | 6.65e-11 | 60.8 |
Msa0349370 | AT2G46070.3 | 32.609 | 92 | 56 | 2 | 85 | 170 | 152 | 243 | 6.70e-11 | 60.8 |
Msa0349370 | AT5G01820.1 | 32.215 | 149 | 78 | 6 | 42 | 185 | 63 | 193 | 6.70e-11 | 60.8 |
Msa0349370 | AT1G45160.2 | 49.153 | 59 | 29 | 1 | 91 | 148 | 755 | 813 | 6.70e-11 | 61.2 |
Msa0349370 | AT1G48260.2 | 38.542 | 96 | 50 | 2 | 91 | 185 | 11 | 98 | 6.94e-11 | 60.5 |
Msa0349370 | AT1G48260.4 | 38.542 | 96 | 50 | 2 | 91 | 185 | 11 | 98 | 6.94e-11 | 60.5 |
Msa0349370 | AT1G48260.3 | 38.542 | 96 | 50 | 2 | 91 | 185 | 11 | 98 | 6.94e-11 | 60.5 |
Msa0349370 | AT1G48260.5 | 38.542 | 96 | 50 | 2 | 91 | 185 | 11 | 98 | 6.94e-11 | 60.5 |
Msa0349370 | AT3G15220.1 | 31.746 | 126 | 65 | 4 | 65 | 188 | 80 | 186 | 7.61e-11 | 60.8 |
Msa0349370 | AT3G17510.2 | 38.144 | 97 | 49 | 3 | 91 | 185 | 25 | 112 | 8.91e-11 | 60.5 |
Msa0349370 | AT3G07980.1 | 38.272 | 81 | 40 | 1 | 108 | 188 | 124 | 194 | 9.16e-11 | 60.8 |
Msa0349370 | AT3G07980.2 | 38.272 | 81 | 40 | 1 | 108 | 188 | 124 | 194 | 9.50e-11 | 60.8 |
Find 89 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGGATATGTTTAAGAAGTT+TGG | 0.187940 | 3_1:+12925194 | Msa0349370:exon |
CTTGAATACATACACAATTT+AGG | 0.247066 | 3_1:+12928680 | Msa0349370:CDS |
CGTATTAAAATAGCTGATTT+TGG | 0.256165 | 3_1:+12928831 | Msa0349370:CDS |
GCTGAATCAATAGATAATTC+TGG | 0.268082 | 3_1:+12925167 | Msa0349370:five_prime_UTR |
CATTTATCTGTTGGTGTTGT+TGG | 0.276113 | 3_1:+12926172 | Msa0349370:CDS |
AATAGATAATTCTGGATTAT+AGG | 0.293184 | 3_1:+12925175 | Msa0349370:five_prime_UTR |
CATTTGGAAGAACAGTAATT+TGG | 0.295079 | 3_1:-12928878 | None:intergenic |
CATGAACAGAAAAGGTAAAA+AGG | 0.301763 | 3_1:-12924715 | None:intergenic |
AGGATATGTTTAAGAAGTTT+GGG | 0.331309 | 3_1:+12925195 | Msa0349370:exon |
TTCTTCCTCCAATGGGCACT+TGG | 0.339252 | 3_1:+12929264 | Msa0349370:three_prime_UTR |
ATCTTACCTGATGTTGCATT+TGG | 0.339895 | 3_1:-12928894 | None:intergenic |
AATTCCTCCCCAGCAACCTT+TGG | 0.340697 | 3_1:+12929059 | Msa0349370:CDS |
AGTGATACATCGTGATATTA+AGG | 0.343328 | 3_1:+12928703 | Msa0349370:CDS |
AGAAAATGAAATATTTGAAA+TGG | 0.345193 | 3_1:+12924827 | Msa0349370:five_prime_UTR |
AAAGAAGAAGAAAGGAAGAA+TGG | 0.357982 | 3_1:-12924692 | None:intergenic |
AACAGTTACCCAAAGGTTGC+TGG | 0.366889 | 3_1:-12929068 | None:intergenic |
GATGCAAGGAAAAGTTGTAT+AGG | 0.376844 | 3_1:+12925034 | Msa0349370:five_prime_UTR |
TTTGATTATGAAACAATTCA+TGG | 0.380560 | 3_1:+12924941 | Msa0349370:five_prime_UTR |
GGGGAGGAATTAAGAACCTT+TGG | 0.387231 | 3_1:-12929047 | None:intergenic |
TATAGGGAATGTGTTTGTTA+AGG | 0.387514 | 3_1:+12925051 | Msa0349370:five_prime_UTR |
GGCACAAAACAACAGCAATA+AGG | 0.409954 | 3_1:-12929206 | None:intergenic |
TCTGGTAAATCACTCTGTTA+TGG | 0.415038 | 3_1:+12924627 | Msa0349370:five_prime_UTR |
ATTTATCTGTTGGTGTTGTT+GGG | 0.415431 | 3_1:+12926173 | Msa0349370:CDS |
ATGCAAGGAAAAGTTGTATA+GGG | 0.415708 | 3_1:+12925035 | Msa0349370:five_prime_UTR |
ATTCCTCCCCAGCAACCTTT+GGG | 0.416637 | 3_1:+12929060 | Msa0349370:CDS |
AAGAATCATTCTACATTGAA+TGG | 0.417107 | 3_1:+12924974 | Msa0349370:five_prime_UTR |
ACCCTTTCTGAACGATGAAA+AGG | 0.418177 | 3_1:-12924462 | None:intergenic |
GCATTGAGTGAGTATAGATC+TGG | 0.426514 | 3_1:-12924430 | None:intergenic |
AAGAAGAAGAAAGGAAGAAT+GGG | 0.431683 | 3_1:-12924691 | None:intergenic |
TTTGTAAGTAACAAGTTCTC+TGG | 0.437512 | 3_1:-12928801 | None:intergenic |
CATACACATAAATAATCTAA+TGG | 0.439518 | 3_1:-12929093 | None:intergenic |
ACTCAACATACTCACAATAG+TGG | 0.458076 | 3_1:-12926224 | None:intergenic |
AAAGTTGTAATGTCTGAGGA+TGG | 0.469654 | 3_1:+12925233 | Msa0349370:CDS |
CCCTTTCTGAACGATGAAAA+GGG | 0.471436 | 3_1:-12924461 | None:intergenic |
ATCATCATCATGAACAGAAA+AGG | 0.477440 | 3_1:-12924723 | None:intergenic |
AACTTGTTACTTACAAATGA+AGG | 0.482816 | 3_1:+12928807 | Msa0349370:CDS |
TACAAAGCCTGCACATTTGT+GGG | 0.484641 | 3_1:+12929005 | Msa0349370:CDS |
ACAGTTACCCAAAGGTTGCT+GGG | 0.485457 | 3_1:-12929067 | None:intergenic |
AGCTGAGAGCTGGAGAGGTC+GGG | 0.488011 | 3_1:-12924558 | None:intergenic |
TGACTTTGTTCAATTTGAAA+CGG | 0.493045 | 3_1:+12925271 | Msa0349370:CDS |
TGGTAGTGTGGAGCCTATGC+AGG | 0.496258 | 3_1:+12928851 | Msa0349370:CDS |
TCTGAGGATGGGAAGAGTAA+AGG | 0.496947 | 3_1:+12925245 | Msa0349370:CDS |
TTACAAAGCCTGCACATTTG+TGG | 0.497505 | 3_1:+12929004 | Msa0349370:CDS |
GTTCTTCCAAATGCAACATC+AGG | 0.498162 | 3_1:+12928888 | Msa0349370:CDS |
TGAAACAATTCATGGGATTG+AGG | 0.498469 | 3_1:+12924949 | Msa0349370:five_prime_UTR |
CTCGCTTCAGACTCTTCCTC+TGG | 0.505954 | 3_1:+12924609 | Msa0349370:five_prime_UTR |
GTAATCGTGAAGCTGAGAGC+TGG | 0.508529 | 3_1:-12924568 | None:intergenic |
GATTAACGTAGAAGAAGGGC+TGG | 0.508782 | 3_1:+12925539 | Msa0349370:intron |
ACGGAGTGGCGGACGTAAAG+AGG | 0.518894 | 3_1:-12924493 | None:intergenic |
GAGAGCTGGAGAGGTCGGGA+TGG | 0.520385 | 3_1:-12924554 | None:intergenic |
TGCAGCCAAGTGCCCATTGG+AGG | 0.525071 | 3_1:-12929269 | None:intergenic |
GCTGCTATTGACAAGTTGAA+TGG | 0.525902 | 3_1:+12925308 | Msa0349370:CDS |
AGCAGTTCCCACAAATGTGC+AGG | 0.529337 | 3_1:-12929012 | None:intergenic |
AAGCTGAGAGCTGGAGAGGT+CGG | 0.532238 | 3_1:-12924559 | None:intergenic |
AAGCCGGAGTGGAGGACGAA+CGG | 0.537723 | 3_1:-12924512 | None:intergenic |
CTTTGTTCAATTTGAAACGG+AGG | 0.544236 | 3_1:+12925274 | Msa0349370:CDS |
GAGGAATTAAGAACCTTTGG+AGG | 0.546164 | 3_1:-12929044 | None:intergenic |
GCAAGATTAACGTAGAAGAA+GGG | 0.551102 | 3_1:+12925535 | Msa0349370:intron |
TTGATTATGAAACAATTCAT+GGG | 0.557113 | 3_1:+12924942 | Msa0349370:five_prime_UTR |
TGCAGAAAGTCGTCTAACTC+AGG | 0.570272 | 3_1:+12928619 | Msa0349370:intron |
TTACCCAAAGGTTGCTGGGG+AGG | 0.572330 | 3_1:-12929063 | None:intergenic |
AAGTGATGTTACCGTCGTGA+GGG | 0.572910 | 3_1:-12924668 | None:intergenic |
TCGCCGACGTAAAGAGAAGC+CGG | 0.580869 | 3_1:-12924528 | None:intergenic |
GTCGTGAGGGGAGAGGAAGT+TGG | 0.587229 | 3_1:-12924655 | None:intergenic |
CGTGAAGCTGAGAGCTGGAG+AGG | 0.588122 | 3_1:-12924563 | None:intergenic |
GTAATTTGGCTATCCTGCAT+AGG | 0.589689 | 3_1:-12928864 | None:intergenic |
AAGTTGTAATGTCTGAGGAT+GGG | 0.596291 | 3_1:+12925234 | Msa0349370:CDS |
TGCTGCTTATGTCCCTCCAA+AGG | 0.596642 | 3_1:+12929031 | Msa0349370:CDS |
ATGTGCAGCCAAGTGCCCAT+TGG | 0.598628 | 3_1:-12929272 | None:intergenic |
CATTGAGTGAGTATAGATCT+GGG | 0.603460 | 3_1:-12924429 | None:intergenic |
CAGTTACCCAAAGGTTGCTG+GGG | 0.604328 | 3_1:-12929066 | None:intergenic |
GTAAAGAGAAGCCGGAGTGG+AGG | 0.604844 | 3_1:-12924520 | None:intergenic |
TGTTACCGTCGTGAGGGGAG+AGG | 0.607063 | 3_1:-12924662 | None:intergenic |
GAAGTGATGTTACCGTCGTG+AGG | 0.611593 | 3_1:-12924669 | None:intergenic |
CACGTCGTGATCCTGATGCA+AGG | 0.624015 | 3_1:+12925020 | Msa0349370:five_prime_UTR |
GTGGAGGACGAACGGAGTGG+CGG | 0.628050 | 3_1:-12924504 | None:intergenic |
ATTAACGTAGAAGAAGGGCT+GGG | 0.630361 | 3_1:+12925540 | Msa0349370:intron |
AATGGTTAACAGTTACCCAA+AGG | 0.636705 | 3_1:-12929075 | None:intergenic |
AGGAATTAAGAACCTTTGGA+GGG | 0.639220 | 3_1:-12929043 | None:intergenic |
GACGTAAAGAGAAGCCGGAG+TGG | 0.651903 | 3_1:-12924523 | None:intergenic |
AGTGATGTTACCGTCGTGAG+GGG | 0.653838 | 3_1:-12924667 | None:intergenic |
AGTGGCGGACGTAAAGAGGA+TGG | 0.655370 | 3_1:-12924489 | None:intergenic |
ACTCCGTTCGTCCTCCACTC+CGG | 0.656120 | 3_1:+12924509 | Msa0349370:five_prime_UTR |
AACTTCCTCTCCCCTCACGA+CGG | 0.672850 | 3_1:+12924657 | Msa0349370:five_prime_UTR |
ATAACAGAGTGATTTACCAG+AGG | 0.686118 | 3_1:-12924625 | None:intergenic |
AAGTAAAGTTGTAATGTCTG+AGG | 0.691055 | 3_1:+12925229 | Msa0349370:CDS |
AAGGTTATTACATAATGACC+TGG | 0.693349 | 3_1:-12929227 | None:intergenic |
ACTCCGGCTTCTCTTTACGT+CGG | 0.696128 | 3_1:+12924525 | Msa0349370:five_prime_UTR |
GGAGTGGAGGACGAACGGAG+TGG | 0.722260 | 3_1:-12924507 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAAAATAATTAAATTTA+AGG | + | chr3_1:12925749-12925768 | Msa0349370:intron | 0.0% |
!!! | TTTATATTAATCTATTGTTT+TGG | + | chr3_1:12927499-12927518 | Msa0349370:intron | 10.0% |
!!! | TTATATTAATCTATTGTTTT+GGG | + | chr3_1:12927500-12927519 | Msa0349370:intron | 10.0% |
!! | AAGTAAAATATTAAATATAG+TGG | + | chr3_1:12928045-12928064 | Msa0349370:intron | 10.0% |
!! | ACTGTTAATATAAATAATAT+AGG | - | chr3_1:12928207-12928226 | None:intergenic | 10.0% |
!! | AAGAAAACAAAAAATATAAA+AGG | - | chr3_1:12929249-12929268 | None:intergenic | 10.0% |
!! | AGAAAATGAAATATTTGAAA+TGG | + | chr3_1:12924827-12924846 | Msa0349370:five_prime_UTR | 15.0% |
!! | AAAGTATAACAAAACAAATA+AGG | + | chr3_1:12927269-12927288 | Msa0349370:intron | 15.0% |
!! | TTGATATTATAGATAATATG+AGG | - | chr3_1:12927707-12927726 | None:intergenic | 15.0% |
!! | TAGAAATTATAGAATAAATC+TGG | - | chr3_1:12927795-12927814 | None:intergenic | 15.0% |
!! | TTTGATTATGAAACAATTCA+TGG | + | chr3_1:12924941-12924960 | Msa0349370:five_prime_UTR | 20.0% |
!! | TTGATTATGAAACAATTCAT+GGG | + | chr3_1:12924942-12924961 | Msa0349370:five_prime_UTR | 20.0% |
!!! | TTTATACTAGTGTTTTGTTT+AGG | + | chr3_1:12925098-12925117 | Msa0349370:intron | 20.0% |
!! | AATAGATAATTCTGGATTAT+AGG | + | chr3_1:12925175-12925194 | Msa0349370:five_prime_UTR | 20.0% |
!!! | AAAACATAATTTGTCAAAGA+TGG | - | chr3_1:12925613-12925632 | None:intergenic | 20.0% |
!!! | TAAATTTAAGGTTTTCTGAA+TGG | + | chr3_1:12925761-12925780 | Msa0349370:intron | 20.0% |
!!! | AAATTTAAGGTTTTCTGAAT+GGG | + | chr3_1:12925762-12925781 | Msa0349370:intron | 20.0% |
!!! | TAAAGCTTTTAGATTTTTCT+TGG | + | chr3_1:12926465-12926484 | Msa0349370:intron | 20.0% |
!!! | TGTTGAAATTGAAATTGTTT+TGG | + | chr3_1:12926643-12926662 | Msa0349370:intron | 20.0% |
!!! | GAGTTAAATTATAATTTGCA+AGG | + | chr3_1:12926741-12926760 | Msa0349370:intron | 20.0% |
!! | TATAATAGTATGCATGATAA+AGG | - | chr3_1:12926961-12926980 | None:intergenic | 20.0% |
!!! | TAGATTATTACTTTTTTGAG+TGG | - | chr3_1:12926995-12927014 | None:intergenic | 20.0% |
!! | TATAGGACTATAATATAACA+AGG | - | chr3_1:12927095-12927114 | None:intergenic | 20.0% |
!! | AAATAAACCTTAACTTTAAG+AGG | - | chr3_1:12927123-12927142 | None:intergenic | 20.0% |
!! | GTTATTGTTATAATAGTACA+TGG | - | chr3_1:12927248-12927267 | None:intergenic | 20.0% |
!! | AAATAAGGTTCATATTACAA+AGG | + | chr3_1:12927284-12927303 | Msa0349370:intron | 20.0% |
!!! | TATTCTTTTGTTTTCTTCTT+TGG | + | chr3_1:12927422-12927441 | Msa0349370:intron | 20.0% |
!! | TTAGTTTAATTAAGAGAAGT+AGG | + | chr3_1:12927744-12927763 | Msa0349370:intron | 20.0% |
!! | TAGTTTAATTAAGAGAAGTA+GGG | + | chr3_1:12927745-12927764 | Msa0349370:intron | 20.0% |
!!! | ATATCACTAGTATTTTAGAA+AGG | - | chr3_1:12927826-12927845 | None:intergenic | 20.0% |
!!! | GATTTGTTATTTATTCACAA+GGG | + | chr3_1:12927868-12927887 | Msa0349370:intron | 20.0% |
!! | AATCTTAAGAACAAAAATTC+AGG | - | chr3_1:12928284-12928303 | None:intergenic | 20.0% |
!! | CATACACATAAATAATCTAA+TGG | - | chr3_1:12929096-12929115 | None:intergenic | 20.0% |
! | TAAAAAGGAAAGAAGAAGAA+AGG | - | chr3_1:12924703-12924722 | None:intergenic | 25.0% |
! | AAAAAATGCAATTCAGTATC+AGG | - | chr3_1:12924774-12924793 | None:intergenic | 25.0% |
! | AAGAATCATTCTACATTGAA+TGG | + | chr3_1:12924974-12924993 | Msa0349370:five_prime_UTR | 25.0% |
!!! | TTAGGTTATTGTTTCTGAAA+TGG | + | chr3_1:12925116-12925135 | Msa0349370:intron | 25.0% |
!!! | TAGGTTATTGTTTCTGAAAT+GGG | + | chr3_1:12925117-12925136 | Msa0349370:intron | 25.0% |
! | TAGGATATGTTTAAGAAGTT+TGG | + | chr3_1:12925194-12925213 | Msa0349370:exon | 25.0% |
! | AGGATATGTTTAAGAAGTTT+GGG | + | chr3_1:12925195-12925214 | Msa0349370:exon | 25.0% |
! | TGACTTTGTTCAATTTGAAA+CGG | + | chr3_1:12925271-12925290 | Msa0349370:CDS | 25.0% |
! | AAATGCTTAAGATTTAACGA+TGG | - | chr3_1:12925463-12925482 | None:intergenic | 25.0% |
! | TGATGTAAGATGAAAAATGA+GGG | - | chr3_1:12925579-12925598 | None:intergenic | 25.0% |
! | TTGATGTAAGATGAAAAATG+AGG | - | chr3_1:12925580-12925599 | None:intergenic | 25.0% |
!! | TTTTCATCTTACATCAACAA+AGG | + | chr3_1:12925583-12925602 | Msa0349370:CDS | 25.0% |
!!! | TGATGTGTTGTTTTGTTATT+GGG | + | chr3_1:12925683-12925702 | Msa0349370:intron | 25.0% |
!! | GATATGAGCATATGATTTTA+TGG | + | chr3_1:12925833-12925852 | Msa0349370:intron | 25.0% |
! | AAAAGGAGATAGTTAATAGT+TGG | - | chr3_1:12926004-12926023 | None:intergenic | 25.0% |
! | TGTCATGAAGAAGAATTAAA+AGG | - | chr3_1:12926021-12926040 | None:intergenic | 25.0% |
!!! | ATGTTTTGTTGCCTTTATTT+TGG | + | chr3_1:12926106-12926125 | Msa0349370:intron | 25.0% |
!! | ATTTTGTTGCATTTATCTGT+TGG | + | chr3_1:12926163-12926182 | Msa0349370:CDS | 25.0% |
!!! | TTTATGTTCCTGCTATTTTT+TGG | + | chr3_1:12926258-12926277 | Msa0349370:intron | 25.0% |
!!! | TTATGTTCCTGCTATTTTTT+GGG | + | chr3_1:12926259-12926278 | Msa0349370:intron | 25.0% |
!!! | TTTTTTAATGTTTGCTTTCC+AGG | + | chr3_1:12926685-12926704 | Msa0349370:intron | 25.0% |
! | ACTATAATATAACAAGGTGA+TGG | - | chr3_1:12927089-12927108 | None:intergenic | 25.0% |
! | AGTAGGACTATAATATTACT+TGG | - | chr3_1:12927177-12927196 | None:intergenic | 25.0% |
! | AAAAAAAAAGCAGAAAGACA+CGG | - | chr3_1:12927576-12927595 | None:intergenic | 25.0% |
!!! | TGTCTTTCTGCTTTTTTTTT+TGG | + | chr3_1:12927576-12927595 | Msa0349370:intron | 25.0% |
!!! | GTCTTTCTGCTTTTTTTTTT+GGG | + | chr3_1:12927577-12927596 | Msa0349370:intron | 25.0% |
!!! | GGATTTGTTATTTATTCACA+AGG | + | chr3_1:12927867-12927886 | Msa0349370:intron | 25.0% |
!! | AAGTGCAATCATTCTTTTAT+TGG | - | chr3_1:12928309-12928328 | None:intergenic | 25.0% |
! | AATAAAAGAATGATTGCACT+TGG | + | chr3_1:12928308-12928327 | Msa0349370:intron | 25.0% |
!!! | TTTGGGAATTTTGATTTGTA+AGG | + | chr3_1:12928343-12928362 | Msa0349370:intron | 25.0% |
!!! | TTGGGAATTTTGATTTGTAA+GGG | + | chr3_1:12928344-12928363 | Msa0349370:intron | 25.0% |
! | CTTGAATACATACACAATTT+AGG | + | chr3_1:12928680-12928699 | Msa0349370:CDS | 25.0% |
!!! | AACTTGTTACTTACAAATGA+AGG | + | chr3_1:12928807-12928826 | Msa0349370:CDS | 25.0% |
!!! | CGTATTAAAATAGCTGATTT+TGG | + | chr3_1:12928831-12928850 | Msa0349370:CDS | 25.0% |
AAGAAGAAGAAAGGAAGAAT+GGG | - | chr3_1:12924694-12924713 | None:intergenic | 30.0% | |
AAAGAAGAAGAAAGGAAGAA+TGG | - | chr3_1:12924695-12924714 | None:intergenic | 30.0% | |
CATGAACAGAAAAGGTAAAA+AGG | - | chr3_1:12924718-12924737 | None:intergenic | 30.0% | |
ATCATCATCATGAACAGAAA+AGG | - | chr3_1:12924726-12924745 | None:intergenic | 30.0% | |
ATGCAAGGAAAAGTTGTATA+GGG | + | chr3_1:12925035-12925054 | Msa0349370:five_prime_UTR | 30.0% | |
! | TATAGGGAATGTGTTTGTTA+AGG | + | chr3_1:12925051-12925070 | Msa0349370:five_prime_UTR | 30.0% |
GCTGAATCAATAGATAATTC+TGG | + | chr3_1:12925167-12925186 | Msa0349370:five_prime_UTR | 30.0% | |
AAGTAAAGTTGTAATGTCTG+AGG | + | chr3_1:12925229-12925248 | Msa0349370:CDS | 30.0% | |
! | TTTAACGATGGTTTCTGAAA+CGG | - | chr3_1:12925451-12925470 | None:intergenic | 30.0% |
GATGTAAGATGAAAAATGAG+GGG | - | chr3_1:12925578-12925597 | None:intergenic | 30.0% | |
CAATAACAAAACAACACATC+AGG | - | chr3_1:12925684-12925703 | None:intergenic | 30.0% | |
!!! | CTGATGTGTTGTTTTGTTAT+TGG | + | chr3_1:12925682-12925701 | Msa0349370:intron | 30.0% |
TGAAACTATCTACATATACC+AGG | - | chr3_1:12925915-12925934 | None:intergenic | 30.0% | |
CTATGACAATCATGATAAGT+TGG | - | chr3_1:12925971-12925990 | None:intergenic | 30.0% | |
GCAGCAAAAAACCAAAATAA+AGG | - | chr3_1:12926120-12926139 | None:intergenic | 30.0% | |
!! | ATTTATCTGTTGGTGTTGTT+GGG | + | chr3_1:12926173-12926192 | Msa0349370:CDS | 30.0% |
! | GATTTCATATGTTGTTTGCT+TGG | + | chr3_1:12926510-12926529 | Msa0349370:intron | 30.0% |
TTATGCAACTAGTTCAAGTA+TGG | - | chr3_1:12926591-12926610 | None:intergenic | 30.0% | |
TACTTACATGATTTAGTACC+TGG | - | chr3_1:12926706-12926725 | None:intergenic | 30.0% | |
AAAACTTCATCAAGAAATGG+AGG | - | chr3_1:12926776-12926795 | None:intergenic | 30.0% | |
! | TCCATTTCTTGATGAAGTTT+TGG | + | chr3_1:12926775-12926794 | Msa0349370:intron | 30.0% |
ACCAAAACTTCATCAAGAAA+TGG | - | chr3_1:12926779-12926798 | None:intergenic | 30.0% | |
GTACTATTCTCGATTAAACA+TGG | - | chr3_1:12926814-12926833 | None:intergenic | 30.0% | |
! | GTGGTTGCATATATTTTACA+AGG | - | chr3_1:12926895-12926914 | None:intergenic | 30.0% |
!! | AAAGGTCTACGTGTTTTTAT+AGG | - | chr3_1:12926943-12926962 | None:intergenic | 30.0% |
!!! | TATTACTTTTTTGAGTGGCA+CGG | - | chr3_1:12926990-12927009 | None:intergenic | 30.0% |
! | AAGCACAAAAGTCTTTTTCT+AGG | - | chr3_1:12927039-12927058 | None:intergenic | 30.0% |
! | AACTTTAAGAGGCAACATAT+AGG | - | chr3_1:12927112-12927131 | None:intergenic | 30.0% |
TATGTTGCCTCTTAAAGTTA+AGG | + | chr3_1:12927113-12927132 | Msa0349370:intron | 30.0% | |
AGGAAAACAGAACAATGTAA+AGG | + | chr3_1:12927304-12927323 | Msa0349370:intron | 30.0% | |
! | AGATTGATTGCTATTCTCTA+AGG | + | chr3_1:12927449-12927468 | Msa0349370:intron | 30.0% |
TCAAATATGCTAGTAAGCTA+TGG | + | chr3_1:12927941-12927960 | Msa0349370:intron | 30.0% | |
!!! | GAATCTTTTAACTTGTAGTC+AGG | - | chr3_1:12927989-12928008 | None:intergenic | 30.0% |
! | AATTCAGGAGCATATATACT+AGG | - | chr3_1:12928269-12928288 | None:intergenic | 30.0% |
GAAACAATATATCTCAATGC+AGG | - | chr3_1:12928490-12928509 | None:intergenic | 30.0% | |
!! | TTGTTTCTTGATAGCTTTTG+TGG | + | chr3_1:12928503-12928522 | Msa0349370:intron | 30.0% |
! | GATAGCTTTTGTGGTATTTT+TGG | + | chr3_1:12928512-12928531 | Msa0349370:intron | 30.0% |
AGTGATACATCGTGATATTA+AGG | + | chr3_1:12928703-12928722 | Msa0349370:CDS | 30.0% | |
TACTGCATTATTGCCATATA+TGG | + | chr3_1:12928745-12928764 | Msa0349370:intron | 30.0% | |
TTTGTAAGTAACAAGTTCTC+TGG | - | chr3_1:12928804-12928823 | None:intergenic | 30.0% | |
CATTTGGAAGAACAGTAATT+TGG | - | chr3_1:12928881-12928900 | None:intergenic | 30.0% | |
AAGGTTATTACATAATGACC+TGG | - | chr3_1:12929230-12929249 | None:intergenic | 30.0% | |
!!! | TTTTTGTTTTCTTCCTCCAA+TGG | + | chr3_1:12929256-12929275 | Msa0349370:three_prime_UTR | 30.0% |
!!! | TTTTGTTTTCTTCCTCCAAT+GGG | + | chr3_1:12929257-12929276 | Msa0349370:three_prime_UTR | 30.0% |
CATTGAGTGAGTATAGATCT+GGG | - | chr3_1:12924432-12924451 | None:intergenic | 35.0% | |
!! | AACGATGAAAAGGGTTTTGA+TGG | - | chr3_1:12924455-12924474 | None:intergenic | 35.0% |
ATAACAGAGTGATTTACCAG+AGG | - | chr3_1:12924628-12924647 | None:intergenic | 35.0% | |
TCTGGTAAATCACTCTGTTA+TGG | + | chr3_1:12924627-12924646 | Msa0349370:five_prime_UTR | 35.0% | |
TGAAACAATTCATGGGATTG+AGG | + | chr3_1:12924949-12924968 | Msa0349370:five_prime_UTR | 35.0% | |
! | ATACAACTTTTCCTTGCATC+AGG | - | chr3_1:12925034-12925053 | None:intergenic | 35.0% |
GATGCAAGGAAAAGTTGTAT+AGG | + | chr3_1:12925034-12925053 | Msa0349370:five_prime_UTR | 35.0% | |
AAAGTTGTAATGTCTGAGGA+TGG | + | chr3_1:12925233-12925252 | Msa0349370:CDS | 35.0% | |
AAGTTGTAATGTCTGAGGAT+GGG | + | chr3_1:12925234-12925253 | Msa0349370:CDS | 35.0% | |
! | CTTTGTTCAATTTGAAACGG+AGG | + | chr3_1:12925274-12925293 | Msa0349370:CDS | 35.0% |
TGCAAGATTAACGTAGAAGA+AGG | + | chr3_1:12925534-12925553 | Msa0349370:intron | 35.0% | |
GCAAGATTAACGTAGAAGAA+GGG | + | chr3_1:12925535-12925554 | Msa0349370:intron | 35.0% | |
CATATGCTCATATCATGACA+TGG | - | chr3_1:12925827-12925846 | None:intergenic | 35.0% | |
TATGATGACTTATCATGTCC+TGG | + | chr3_1:12925894-12925913 | Msa0349370:intron | 35.0% | |
!! | CATTTATCTGTTGGTGTTGT+TGG | + | chr3_1:12926172-12926191 | Msa0349370:CDS | 35.0% |
ACTCAACATACTCACAATAG+TGG | - | chr3_1:12926227-12926246 | None:intergenic | 35.0% | |
TAGCAGGAACATAAAACAAG+TGG | - | chr3_1:12926253-12926272 | None:intergenic | 35.0% | |
TTAGTGACCCAAAAAATAGC+AGG | - | chr3_1:12926269-12926288 | None:intergenic | 35.0% | |
GTTGCATAAGATGATGAATG+TGG | + | chr3_1:12926602-12926621 | Msa0349370:intron | 35.0% | |
! | GTAAGTATTAACAGAAGTGC+TGG | + | chr3_1:12926719-12926738 | Msa0349370:intron | 35.0% |
TTCATCAAGAAATGGAGGTA+AGG | - | chr3_1:12926771-12926790 | None:intergenic | 35.0% | |
TCTCGATTAAACATGGCTAT+TGG | - | chr3_1:12926807-12926826 | None:intergenic | 35.0% | |
!! | CTAAGGTCACATGTTTTTGT+AGG | - | chr3_1:12926917-12926936 | None:intergenic | 35.0% |
ACATGGATTCCTAGATCTTA+CGG | - | chr3_1:12927231-12927250 | None:intergenic | 35.0% | |
! | CAAGGAAAAAAGTTCTGGTA+GGG | + | chr3_1:12927365-12927384 | Msa0349370:intron | 35.0% |
TAGCTGAAGTATGATTCACA+AGG | + | chr3_1:12927845-12927864 | Msa0349370:intron | 35.0% | |
AGCTGAAGTATGATTCACAA+GGG | + | chr3_1:12927846-12927865 | Msa0349370:intron | 35.0% | |
GTGACAATGTGGTTGTATTT+GGG | + | chr3_1:12927963-12927982 | Msa0349370:intron | 35.0% | |
AGAAACCTCTACGATTAACA+CGG | - | chr3_1:12928240-12928259 | None:intergenic | 35.0% | |
ACTTGGCAGTAACTTCTATT+TGG | + | chr3_1:12928325-12928344 | Msa0349370:intron | 35.0% | |
CTTGGCAGTAACTTCTATTT+GGG | + | chr3_1:12928326-12928345 | Msa0349370:intron | 35.0% | |
! | GGGAAAGATTCTTTAAAGAG+TGG | - | chr3_1:12928441-12928460 | None:intergenic | 35.0% |
ATTCAGTAACGAGCATTAGA+AGG | - | chr3_1:12928564-12928583 | None:intergenic | 35.0% | |
CACACAGGAAATCAAAAGTT+TGG | - | chr3_1:12928601-12928620 | None:intergenic | 35.0% | |
GATACATCGTGATATTAAGG+TGG | + | chr3_1:12928706-12928725 | Msa0349370:intron | 35.0% | |
! | TGATATTAAGGTGGCTCTAT+GGG | + | chr3_1:12928715-12928734 | Msa0349370:intron | 35.0% |
! | TTTTCGCACATAGCCATATA+TGG | - | chr3_1:12928761-12928780 | None:intergenic | 35.0% |
!!! | AATAGCTGATTTTGGTAGTG+TGG | + | chr3_1:12928839-12928858 | Msa0349370:CDS | 35.0% |
ATCTTACCTGATGTTGCATT+TGG | - | chr3_1:12928897-12928916 | None:intergenic | 35.0% | |
AATGCAACATCAGGTAAGAT+AGG | + | chr3_1:12928897-12928916 | Msa0349370:intron | 35.0% | |
AGGAATTAAGAACCTTTGGA+GGG | - | chr3_1:12929046-12929065 | None:intergenic | 35.0% | |
AATGGTTAACAGTTACCCAA+AGG | - | chr3_1:12929078-12929097 | None:intergenic | 35.0% | |
GCATTGAGTGAGTATAGATC+TGG | - | chr3_1:12924433-12924452 | None:intergenic | 40.0% | |
! | ACCCTTTTCATCGTTCAGAA+AGG | + | chr3_1:12924460-12924479 | Msa0349370:five_prime_UTR | 40.0% |
CCCTTTCTGAACGATGAAAA+GGG | - | chr3_1:12924464-12924483 | None:intergenic | 40.0% | |
! | CCCTTTTCATCGTTCAGAAA+GGG | + | chr3_1:12924461-12924480 | Msa0349370:five_prime_UTR | 40.0% |
ACCCTTTCTGAACGATGAAA+AGG | - | chr3_1:12924465-12924484 | None:intergenic | 40.0% | |
! | GCTGCTATTGACAAGTTGAA+TGG | + | chr3_1:12925308-12925327 | Msa0349370:CDS | 40.0% |
ATTAACGTAGAAGAAGGGCT+GGG | + | chr3_1:12925540-12925559 | Msa0349370:intron | 40.0% | |
TTAAAAGGTGGTCACAACTG+AGG | + | chr3_1:12926366-12926385 | Msa0349370:intron | 40.0% | |
TAAAAGGTGGTCACAACTGA+GGG | + | chr3_1:12926367-12926386 | Msa0349370:intron | 40.0% | |
! | AGAGTACCTGCTGAAGTTTA+AGG | + | chr3_1:12926428-12926447 | Msa0349370:intron | 40.0% |
GAGTACCTGCTGAAGTTTAA+GGG | + | chr3_1:12926429-12926448 | Msa0349370:intron | 40.0% | |
TTTGTCCCTTAAACTTCAGC+AGG | - | chr3_1:12926437-12926456 | None:intergenic | 40.0% | |
!! | AGGTCACATGTTTTTGTAGG+TGG | - | chr3_1:12926914-12926933 | None:intergenic | 40.0% |
!! | CGTGTTTTTATAGGTGGCTA+AGG | - | chr3_1:12926934-12926953 | None:intergenic | 40.0% |
!! | GGTCTACGTGTTTTTATAGG+TGG | - | chr3_1:12926940-12926959 | None:intergenic | 40.0% |
CTAGTAGGTAGTAGGTTAGT+AGG | - | chr3_1:12927194-12927213 | None:intergenic | 40.0% | |
AGAGATCCAGATGAAGTTGA+CGG | + | chr3_1:12927342-12927361 | Msa0349370:intron | 40.0% | |
! | GCAAGGAAAAAAGTTCTGGT+AGG | + | chr3_1:12927364-12927383 | Msa0349370:intron | 40.0% |
AGTAAGCTATGGTGACAATG+TGG | + | chr3_1:12927952-12927971 | Msa0349370:intron | 40.0% | |
GGTGACAATGTGGTTGTATT+TGG | + | chr3_1:12927962-12927981 | Msa0349370:intron | 40.0% | |
TAAGGGAGATTCTTCTGTGA+TGG | + | chr3_1:12928361-12928380 | Msa0349370:intron | 40.0% | |
TCCTGCTCTGTGAAATGAAT+GGG | - | chr3_1:12928461-12928480 | None:intergenic | 40.0% | |
TTCCTGCTCTGTGAAATGAA+TGG | - | chr3_1:12928462-12928481 | None:intergenic | 40.0% | |
! | GTGATATTAAGGTGGCTCTA+TGG | + | chr3_1:12928714-12928733 | Msa0349370:intron | 40.0% |
GTAATTTGGCTATCCTGCAT+AGG | - | chr3_1:12928867-12928886 | None:intergenic | 40.0% | |
GTTCTTCCAAATGCAACATC+AGG | + | chr3_1:12928888-12928907 | Msa0349370:CDS | 40.0% | |
TCAGGTAAGATAGGAGCAAA+TGG | + | chr3_1:12928906-12928925 | Msa0349370:intron | 40.0% | |
TTACAAAGCCTGCACATTTG+TGG | + | chr3_1:12929004-12929023 | Msa0349370:CDS | 40.0% | |
TACAAAGCCTGCACATTTGT+GGG | + | chr3_1:12929005-12929024 | Msa0349370:CDS | 40.0% | |
GAGGAATTAAGAACCTTTGG+AGG | - | chr3_1:12929047-12929066 | None:intergenic | 40.0% | |
GGCACAAAACAACAGCAATA+AGG | - | chr3_1:12929209-12929228 | None:intergenic | 40.0% | |
!!! | TATTGCTGTTGTTTTGTGCC+AGG | + | chr3_1:12929209-12929228 | Msa0349370:three_prime_UTR | 40.0% |
AAGTGATGTTACCGTCGTGA+GGG | - | chr3_1:12924671-12924690 | None:intergenic | 45.0% | |
TCTGAGGATGGGAAGAGTAA+AGG | + | chr3_1:12925245-12925264 | Msa0349370:CDS | 45.0% | |
!! | AACGATGGTTTCTGAAACGG+CGG | - | chr3_1:12925448-12925467 | None:intergenic | 45.0% |
GATTAACGTAGAAGAAGGGC+TGG | + | chr3_1:12925539-12925558 | Msa0349370:intron | 45.0% | |
CTTGCTCACTTATGCTCTTG+TGG | - | chr3_1:12926059-12926078 | None:intergenic | 45.0% | |
!!! | GACTCAACTAGCTTTTCGTG+AGG | + | chr3_1:12926327-12926346 | Msa0349370:intron | 45.0% |
!!! | AACTAGCTTTTCGTGAGGCA+GGG | + | chr3_1:12926332-12926351 | Msa0349370:intron | 45.0% |
! | AGGGGTCGAGTTGTCTTAAA+AGG | + | chr3_1:12926351-12926370 | Msa0349370:intron | 45.0% |
! | GGTCGAGTTGTCTTAAAAGG+TGG | + | chr3_1:12926354-12926373 | Msa0349370:intron | 45.0% |
AAAAGGTGGTCACAACTGAG+GGG | + | chr3_1:12926368-12926387 | Msa0349370:intron | 45.0% | |
GCAGGTACTCTAGTAAGTCA+TGG | - | chr3_1:12926419-12926438 | None:intergenic | 45.0% | |
GTGTGTAGAGATAGAGTCAC+AGG | - | chr3_1:12927155-12927174 | None:intergenic | 45.0% | |
GCAAGTGACTAGTAGGTAGT+AGG | - | chr3_1:12927202-12927221 | None:intergenic | 45.0% | |
TTCCTAGATCTTACGGCATG+TGG | - | chr3_1:12927224-12927243 | None:intergenic | 45.0% | |
GACGGCAAGGAAAAAAGTTC+TGG | + | chr3_1:12927360-12927379 | Msa0349370:intron | 45.0% | |
GAGATTCTTCTGTGATGGTC+TGG | + | chr3_1:12928366-12928385 | Msa0349370:intron | 45.0% | |
TCCCATTCATTTCACAGAGC+AGG | + | chr3_1:12928457-12928476 | Msa0349370:intron | 45.0% | |
TTAGACGACTTTCTGCACAC+AGG | - | chr3_1:12928616-12928635 | None:intergenic | 45.0% | |
TGCAGAAAGTCGTCTAACTC+AGG | + | chr3_1:12928619-12928638 | Msa0349370:intron | 45.0% | |
! | ATTAAGGTGGCTCTATGGGA+TGG | + | chr3_1:12928719-12928738 | Msa0349370:intron | 45.0% |
GGGGAGGAATTAAGAACCTT+TGG | - | chr3_1:12929050-12929069 | None:intergenic | 45.0% | |
ACAGTTACCCAAAGGTTGCT+GGG | - | chr3_1:12929070-12929089 | None:intergenic | 45.0% | |
AACAGTTACCCAAAGGTTGC+TGG | - | chr3_1:12929071-12929090 | None:intergenic | 45.0% | |
ACTCCGGCTTCTCTTTACGT+CGG | + | chr3_1:12924525-12924544 | Msa0349370:five_prime_UTR | 50.0% | |
GTAATCGTGAAGCTGAGAGC+TGG | - | chr3_1:12924571-12924590 | None:intergenic | 50.0% | |
AGTGATGTTACCGTCGTGAG+GGG | - | chr3_1:12924670-12924689 | None:intergenic | 50.0% | |
GAAGTGATGTTACCGTCGTG+AGG | - | chr3_1:12924672-12924691 | None:intergenic | 50.0% | |
!!! | CAACTAGCTTTTCGTGAGGC+AGG | + | chr3_1:12926331-12926350 | Msa0349370:intron | 50.0% |
!!! | ACTAGCTTTTCGTGAGGCAG+GGG | + | chr3_1:12926333-12926352 | Msa0349370:intron | 50.0% |
GCATGTGGCAAGTGACTAGT+AGG | - | chr3_1:12927209-12927228 | None:intergenic | 50.0% | |
TGCCACATGCCGTAAGATCT+AGG | + | chr3_1:12927219-12927238 | Msa0349370:intron | 50.0% | |
TCCAGATGAAGTTGACGGCA+AGG | + | chr3_1:12927347-12927366 | Msa0349370:intron | 50.0% | |
TCCTTGCCGTCAACTTCATC+TGG | - | chr3_1:12927351-12927370 | None:intergenic | 50.0% | |
CGCAAGACACGGACATTTGT+GGG | - | chr3_1:12927543-12927562 | None:intergenic | 50.0% | |
CCACAAATGTCCGTGTCTTG+CGG | + | chr3_1:12927541-12927560 | Msa0349370:intron | 50.0% | |
AAAGCAGAAAGACACGGCAG+CGG | - | chr3_1:12927570-12927589 | None:intergenic | 50.0% | |
! | TAGTGAGCGTGTCTTGGTGT+CGG | - | chr3_1:12927653-12927672 | None:intergenic | 50.0% |
TGCTTGTAGTGAGCGTGTCT+TGG | - | chr3_1:12927659-12927678 | None:intergenic | 50.0% | |
!! | GGAACGAGAACTCTGAAGCA+TGG | - | chr3_1:12927686-12927705 | None:intergenic | 50.0% |
CGTGTCCGTGTTAATCGTAG+AGG | + | chr3_1:12928232-12928251 | Msa0349370:intron | 50.0% | |
AGCAGTTCCCACAAATGTGC+AGG | - | chr3_1:12929015-12929034 | None:intergenic | 50.0% | |
! | TGCTGCTTATGTCCCTCCAA+AGG | + | chr3_1:12929031-12929050 | Msa0349370:CDS | 50.0% |
AATTCCTCCCCAGCAACCTT+TGG | + | chr3_1:12929059-12929078 | Msa0349370:CDS | 50.0% | |
ATTCCTCCCCAGCAACCTTT+GGG | + | chr3_1:12929060-12929079 | Msa0349370:CDS | 50.0% | |
CAGTTACCCAAAGGTTGCTG+GGG | - | chr3_1:12929069-12929088 | None:intergenic | 50.0% | |
TTCTTCCTCCAATGGGCACT+TGG | + | chr3_1:12929264-12929283 | Msa0349370:three_prime_UTR | 50.0% | |
!! | AGTGGCGGACGTAAAGAGGA+TGG | - | chr3_1:12924492-12924511 | None:intergenic | 55.0% |
GTAAAGAGAAGCCGGAGTGG+AGG | - | chr3_1:12924523-12924542 | None:intergenic | 55.0% | |
GACGTAAAGAGAAGCCGGAG+TGG | - | chr3_1:12924526-12924545 | None:intergenic | 55.0% | |
TCGCCGACGTAAAGAGAAGC+CGG | - | chr3_1:12924531-12924550 | None:intergenic | 55.0% | |
AAGCTGAGAGCTGGAGAGGT+CGG | - | chr3_1:12924562-12924581 | None:intergenic | 55.0% | |
CTCGCTTCAGACTCTTCCTC+TGG | + | chr3_1:12924609-12924628 | Msa0349370:five_prime_UTR | 55.0% | |
AACTTCCTCTCCCCTCACGA+CGG | + | chr3_1:12924657-12924676 | Msa0349370:five_prime_UTR | 55.0% | |
CACGTCGTGATCCTGATGCA+AGG | + | chr3_1:12925020-12925039 | Msa0349370:five_prime_UTR | 55.0% | |
AGACACGGACATTTGTGGGC+TGG | - | chr3_1:12927539-12927558 | None:intergenic | 55.0% | |
CCGCAAGACACGGACATTTG+TGG | - | chr3_1:12927544-12927563 | None:intergenic | 55.0% | |
AGCATCCGACACGTGTCGTA+CGG | + | chr3_1:12927612-12927631 | Msa0349370:intron | 55.0% | |
! | TGGTAGTGTGGAGCCTATGC+AGG | + | chr3_1:12928851-12928870 | Msa0349370:CDS | 55.0% |
TTACCCAAAGGTTGCTGGGG+AGG | - | chr3_1:12929066-12929085 | None:intergenic | 55.0% | |
!! | ACGGAGTGGCGGACGTAAAG+AGG | - | chr3_1:12924496-12924515 | None:intergenic | 60.0% |
ACTCCGTTCGTCCTCCACTC+CGG | + | chr3_1:12924509-12924528 | Msa0349370:five_prime_UTR | 60.0% | |
AAGCCGGAGTGGAGGACGAA+CGG | - | chr3_1:12924515-12924534 | None:intergenic | 60.0% | |
AGCTGAGAGCTGGAGAGGTC+GGG | - | chr3_1:12924561-12924580 | None:intergenic | 60.0% | |
CGTGAAGCTGAGAGCTGGAG+AGG | - | chr3_1:12924566-12924585 | None:intergenic | 60.0% | |
GTCGTGAGGGGAGAGGAAGT+TGG | - | chr3_1:12924658-12924677 | None:intergenic | 60.0% | |
TGTTACCGTCGTGAGGGGAG+AGG | - | chr3_1:12924665-12924684 | None:intergenic | 60.0% | |
!! | ACGGACATTTGTGGGCTGGC+AGG | - | chr3_1:12927535-12927554 | None:intergenic | 60.0% |
GTACGACACGTGTCGGATGC+TGG | - | chr3_1:12927613-12927632 | None:intergenic | 60.0% | |
GCATCCGACACGTGTCGTAC+GGG | + | chr3_1:12927613-12927632 | Msa0349370:intron | 60.0% | |
GACACCCGTACGACACGTGT+CGG | - | chr3_1:12927620-12927639 | None:intergenic | 60.0% | |
!! | GTGTCTTGGTGTCGGACACG+CGG | - | chr3_1:12927645-12927664 | None:intergenic | 60.0% |
GTGGAGGACGAACGGAGTGG+CGG | - | chr3_1:12924507-12924526 | None:intergenic | 65.0% | |
GGAGTGGAGGACGAACGGAG+TGG | - | chr3_1:12924510-12924529 | None:intergenic | 65.0% | |
GAGAGCTGGAGAGGTCGGGA+TGG | - | chr3_1:12924557-12924576 | None:intergenic | 65.0% | |
GCAGCGGACACCGCAAGACA+CGG | - | chr3_1:12927554-12927573 | None:intergenic | 65.0% | |
ACGTGTCGGATGCTGGTGGC+AGG | - | chr3_1:12927606-12927625 | None:intergenic | 65.0% | |
CGACACGTGTCGGATGCTGG+TGG | - | chr3_1:12927610-12927629 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 12924427 | 12929290 | 12924427 | ID=Msa0349370;Name=Msa0349370 |
chr3_1 | mRNA | 12924427 | 12929290 | 12924427 | ID=Msa0349370-mRNA-1;Parent=Msa0349370;Name=Msa0349370-mRNA-1;_AED=0.14;_eAED=0.14;_QI=685|0.5|0.71|0.85|0.83|0.85|7|205|193 |
chr3_1 | exon | 12924427 | 12925072 | 12924427 | ID=Msa0349370-mRNA-1:exon:3304;Parent=Msa0349370-mRNA-1 |
chr3_1 | exon | 12925161 | 12925354 | 12925161 | ID=Msa0349370-mRNA-1:exon:3305;Parent=Msa0349370-mRNA-1 |
chr3_1 | exon | 12925550 | 12925604 | 12925550 | ID=Msa0349370-mRNA-1:exon:3306;Parent=Msa0349370-mRNA-1 |
chr3_1 | exon | 12926157 | 12926235 | 12926157 | ID=Msa0349370-mRNA-1:exon:3307;Parent=Msa0349370-mRNA-1 |
chr3_1 | exon | 12928624 | 12928724 | 12928624 | ID=Msa0349370-mRNA-1:exon:3308;Parent=Msa0349370-mRNA-1 |
chr3_1 | exon | 12928801 | 12928909 | 12928801 | ID=Msa0349370-mRNA-1:exon:3309;Parent=Msa0349370-mRNA-1 |
chr3_1 | exon | 12929003 | 12929290 | 12929003 | ID=Msa0349370-mRNA-1:exon:3310;Parent=Msa0349370-mRNA-1 |
chr3_1 | five_prime_UTR | 12924427 | 12925072 | 12924427 | ID=Msa0349370-mRNA-1:five_prime_utr;Parent=Msa0349370-mRNA-1 |
chr3_1 | five_prime_UTR | 12925161 | 12925199 | 12925161 | ID=Msa0349370-mRNA-1:five_prime_utr;Parent=Msa0349370-mRNA-1 |
chr3_1 | CDS | 12925200 | 12925354 | 12925200 | ID=Msa0349370-mRNA-1:cds;Parent=Msa0349370-mRNA-1 |
chr3_1 | CDS | 12925550 | 12925604 | 12925550 | ID=Msa0349370-mRNA-1:cds;Parent=Msa0349370-mRNA-1 |
chr3_1 | CDS | 12926157 | 12926235 | 12926157 | ID=Msa0349370-mRNA-1:cds;Parent=Msa0349370-mRNA-1 |
chr3_1 | CDS | 12928624 | 12928724 | 12928624 | ID=Msa0349370-mRNA-1:cds;Parent=Msa0349370-mRNA-1 |
chr3_1 | CDS | 12928801 | 12928909 | 12928801 | ID=Msa0349370-mRNA-1:cds;Parent=Msa0349370-mRNA-1 |
chr3_1 | CDS | 12929003 | 12929085 | 12929003 | ID=Msa0349370-mRNA-1:cds;Parent=Msa0349370-mRNA-1 |
chr3_1 | three_prime_UTR | 12929086 | 12929290 | 12929086 | ID=Msa0349370-mRNA-1:three_prime_utr;Parent=Msa0349370-mRNA-1 |
Gene Sequence |
Protein sequence |