AlfalfaGEDB | Msa0349880

M. sativa cultivar zhongmu-4 / Msa0349880

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0349880	XP_003598636.1	95.035	282	14	0	1	282	1	282	0.0	543

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0349880	sp\|Q6P819\|CNOT9_XENTR	52.734	256	120	1	43	297	28	283	5.44e-88	268

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0349880	Q2HW81	95.035	282	14	0	1	282	1	282	0.0	543

TFs/TRs:

Gene ID	Type	Classification
Msa0349880	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0349880	MtrunA17_Chr1g0177151	60.311	257	98	1	1	257	1	253	4.77e-112	325
Msa0349880	MtrunA17_Chr7g0224601	62.909	275	98	2	12	282	2	276	1.05e-106	313
Msa0349880	MtrunA17_Chr8g0392781	53.628	317	112	2	1	282	1	317	6.98e-106	312
Msa0349880	MtrunA17_Chr3g0099561	61.633	245	94	0	38	282	26	270	2.18e-100	296
Msa0349880	MtrunA17_Chr5g0444621	62.385	218	82	0	70	287	52	269	1.50e-89	268
Msa0349880	MtrunA17_Chr6g0477171	64.286	196	70	0	62	257	48	243	2.34e-83	251
Msa0349880	MtrunA17_Chr3g0083811	97.938	97	2	0	186	282	1	97	1.06e-62	194
Msa0349880	MtrunA17_Chr3g0083821	72.072	111	31	0	54	164	10	120	1.82e-50	163
Msa0349880	MtrunA17_Chr5g0444631	66.038	53	18	0	112	164	4	56	1.53e-18	78.2
Msa0349880	MtrunA17_Chr6g0477181	59.322	59	24	0	1	59	1	59	3.42e-15	70.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0349880	AT3G20800.1	57.303	267	109	1	21	282	17	283	8.70e-101	298
Msa0349880	AT5G12980.1	55.510	245	109	0	31	275	28	272	1.38e-94	282
Msa0349880	AT2G32550.2	35.271	258	150	6	53	297	67	320	8.38e-35	129
Msa0349880	AT2G32550.3	35.628	247	142	6	64	297	39	281	2.20e-34	127
Msa0349880	AT2G32550.1	35.371	229	131	6	82	297	2	226	1.58e-29	112

Find 49 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGGAACTTGGACCTTTATTA+TGG	0.221177	3_1:-14243310	Msa0349880:CDS
ATATTAAATTATATCATATT+AGG	0.243236	3_1:+14240489	None:intergenic
CTCGTTTATCTCAAAATTGC+AGG	0.285763	3_1:-14240729	Msa0349880:intron
AGAAATGAGATCCTTGTATC+AGG	0.301701	3_1:+14242301	None:intergenic
ATAGAAACCTATCACTTCTT+TGG	0.303481	3_1:+14241092	None:intergenic
AGGAATGGATATAAATATAA+AGG	0.360461	3_1:+14241909	None:intergenic
GTTGCTAGTCTTGGAGTCAT+TGG	0.372727	3_1:-14241846	Msa0349880:CDS
TATATTAGACGATGATGGTT+TGG	0.376298	3_1:-14240872	Msa0349880:CDS
TTGGCATCTTTGAGCCTGTT+TGG	0.379455	3_1:+14240585	None:intergenic
CCAACAGTATTCCATAATAA+AGG	0.383147	3_1:+14243299	None:intergenic
TATGATCAGTGGTGCTAGAT+TGG	0.401740	3_1:+14244729	None:intergenic
ATGCTCTCTATGTGCTCTCC+AGG	0.402483	3_1:-14244649	Msa0349880:CDS
GTTAACACCAAAGAAGTGAT+AGG	0.420089	3_1:-14241099	Msa0349880:CDS
CAATGTTCTAGCATTACTTC+AGG	0.422671	3_1:-14242532	Msa0349880:intron
TCAGAGCACCAAGTTATTTG+AGG	0.428345	3_1:-14243330	Msa0349880:intron
TAACAACTTATCTTCCAAAC+AGG	0.438040	3_1:-14240599	Msa0349880:CDS
TAACACCCTTTGAAAATTTG+AGG	0.438320	3_1:-14241869	Msa0349880:CDS
TTCTTTGTTGAGAGCGATTG+AGG	0.439462	3_1:+14244788	None:intergenic
GATTGTGAGGGAGAGAGATT+CGG	0.440290	3_1:+14242567	None:intergenic
AATTTGAGGGTTGCTAGTCT+TGG	0.449868	3_1:-14241855	Msa0349880:CDS
ATGATCAGTGGTGCTAGATT+GGG	0.463771	3_1:+14244730	None:intergenic
AATCTAGCACCACTGATCAT+AGG	0.464495	3_1:-14244727	Msa0349880:CDS
AAAATTATATTAGACGATGA+TGG	0.467412	3_1:-14240877	Msa0349880:CDS
TGTTATTGAACTCAGCAATC+CGG	0.481393	3_1:-14244684	Msa0349880:CDS
ACCAAGTTATTTGAGGAACT+TGG	0.485648	3_1:-14243323	Msa0349880:CDS
AGATTCGGTGGTGAAAGAGT+AGG	0.488495	3_1:+14242582	None:intergenic
GCTAGTCTTGGAGTCATTGG+TGG	0.491588	3_1:-14241843	Msa0349880:CDS
AACACCCTTTGAAAATTTGA+GGG	0.491722	3_1:-14241868	Msa0349880:CDS
CCTTTATTATGGAATACTGT+TGG	0.492405	3_1:-14243299	Msa0349880:CDS
TCCAAGTTCCTCAAATAACT+TGG	0.522228	3_1:+14243322	None:intergenic
CACCCTCACCTCGTTTGTCG+AGG	0.530068	3_1:-14240771	Msa0349880:CDS
TGGCATCTCACCCTGATACA+AGG	0.537570	3_1:-14242312	Msa0349880:CDS
AGTCATTGGTGGCTCGATGA+AGG	0.546340	3_1:-14241832	Msa0349880:intron
TGTTTGTCTAATATGCAAAA+CGG	0.565201	3_1:-14241045	Msa0349880:CDS
ACAAGGATCTCATTTCTCAA+TGG	0.566776	3_1:-14242295	Msa0349880:intron
AAGCCTCGACAAACGAGGTG+AGG	0.569309	3_1:+14240768	None:intergenic
AGCCTCGACAAACGAGGTGA+GGG	0.588745	3_1:+14240769	None:intergenic
CTAGATTGGGTAGAATCACC+AGG	0.589884	3_1:+14244743	None:intergenic
TGCTCTCTATGTGCTCTCCA+GGG	0.593950	3_1:-14244648	Msa0349880:intron
GAAATGAGATCCTTGTATCA+GGG	0.596244	3_1:+14242302	None:intergenic
CACACTCGAGTTGATTGTGA+GGG	0.603583	3_1:+14242555	None:intergenic
TTTCGTGTAAGTACTTCTTG+TGG	0.613050	3_1:-14240549	Msa0349880:CDS
TAGCACCACTGATCATAGGA+TGG	0.627844	3_1:-14244723	Msa0349880:CDS
CTCGACAAACGAGGTGAGGG+TGG	0.635662	3_1:+14240772	None:intergenic
GATTGCTGAGTTCAATAACA+AGG	0.649486	3_1:+14244687	None:intergenic
GCACACTCGAGTTGATTGTG+AGG	0.665692	3_1:+14242554	None:intergenic
GTAAGCCATCCTATGATCAG+TGG	0.669763	3_1:+14244718	None:intergenic
ATCAAAAGCCTCGACAAACG+AGG	0.676514	3_1:+14240763	None:intergenic
TGTGAGGGAGAGAGATTCGG+TGG	0.689243	3_1:+14242570	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTATAAAAAATATCACAA+CGG	+	chr3_1:14240906-14240925	None:intergenic	10.0%
!!!	TTTTTTATAATTGAATTGAA+AGG	-	chr3_1:14240914-14240933	Msa0349880:intron	10.0%
!!!	TTTTTATAATTGAATTGAAA+GGG	-	chr3_1:14240915-14240934	Msa0349880:intron	10.0%
!!!	ATATTGTGATTTTTTTTTAA+TGG	-	chr3_1:14241377-14241396	Msa0349880:intron	10.0%
!!	TAGAATAAAAAATTGATAAA+TGG	+	chr3_1:14241531-14241550	None:intergenic	10.0%
!!!	AAAAAATTTAATGAAAGTTT+TGG	+	chr3_1:14241766-14241785	None:intergenic	10.0%
!!	GAAAAATAAAAACATAAATT+TGG	+	chr3_1:14242377-14242396	None:intergenic	10.0%
!!!	ATATATATTTTTTTACATCA+AGG	+	chr3_1:14242919-14242938	None:intergenic	10.0%
!!	TGCATATAATAAAAAAAAAA+AGG	+	chr3_1:14243362-14243381	None:intergenic	10.0%
!!	AGTTATAATAAATTAATTGT+CGG	-	chr3_1:14243848-14243867	Msa0349880:intron	10.0%
!!!	TACAATAATATCTAATTTTA+GGG	+	chr3_1:14243902-14243921	None:intergenic	10.0%
!!	ATTATATGAAAATTGATATT+AGG	-	chr3_1:14244000-14244019	Msa0349880:intron	10.0%
!!	AATACTCTATAATAATAAAT+TGG	+	chr3_1:14244327-14244346	None:intergenic	10.0%
!!!	TATACAGTAAAATTTTTCAA+CGG	+	chr3_1:14241304-14241323	None:intergenic	15.0%
!!	AAAATCACAATATCAAATTT+CGG	+	chr3_1:14241370-14241389	None:intergenic	15.0%
!!!	GAACTTTTATACTAAAATTT+CGG	-	chr3_1:14241885-14241904	Msa0349880:CDS	15.0%
!!	ATAGATTCATAATCTAAAAA+TGG	+	chr3_1:14242322-14242341	None:intergenic	15.0%
!!!	TTGAATATTATTTTAGCATA+TGG	-	chr3_1:14242816-14242835	Msa0349880:intron	15.0%
!!!	TAATAACGTGAAAAATATTT+TGG	-	chr3_1:14243213-14243232	Msa0349880:intron	15.0%
!!!	AATAACGTGAAAAATATTTT+GGG	-	chr3_1:14243214-14243233	Msa0349880:intron	15.0%
!!	TTAAAAAAACAAAAGTTAGA+AGG	+	chr3_1:14243502-14243521	None:intergenic	15.0%
!!	TCCAAAAAAAAAAAACTTTA+TGG	-	chr3_1:14243732-14243751	Msa0349880:intron	15.0%
!!!	AAATATCTAGTTATTTTTAG+CGG	-	chr3_1:14243756-14243775	Msa0349880:intron	15.0%
!!	GACAATTAATTTATTATAAC+TGG	+	chr3_1:14243849-14243868	None:intergenic	15.0%
!!!	CTACAATAATATCTAATTTT+AGG	+	chr3_1:14243903-14243922	None:intergenic	15.0%
!!	AAAATTGATATTAGGTATTT+GGG	-	chr3_1:14244008-14244027	Msa0349880:intron	15.0%
!!!	ATCATTTTTTGTTGAAAACT+TGG	-	chr3_1:14241255-14241274	Msa0349880:intron	20.0%
!!!	AAATTGATAAATGGATTTCT+AGG	+	chr3_1:14241522-14241541	None:intergenic	20.0%
!!!	GTATCATGTTTGTTTTATTT+TGG	-	chr3_1:14241863-14241882	Msa0349880:CDS	20.0%
!!!	ATTACTTATTATTTTCTAGC+TGG	-	chr3_1:14242066-14242085	Msa0349880:intron	20.0%
!!!	AATTTAGTTTTTAAACCTCT+AGG	-	chr3_1:14242526-14242545	Msa0349880:intron	20.0%
!!!	ATTGATTTTCATGTATTTTG+GGG	+	chr3_1:14242856-14242875	None:intergenic	20.0%
!!!	GATTGATTTTCATGTATTTT+GGG	+	chr3_1:14242857-14242876	None:intergenic	20.0%
!!!	TGATTGATTTTCATGTATTT+TGG	+	chr3_1:14242858-14242877	None:intergenic	20.0%
!!!	ATGTTTTTTTTTATAGTGTG+TGG	-	chr3_1:14242968-14242987	Msa0349880:intron	20.0%
!!	AGGAATGGATATAAATATAA+AGG	+	chr3_1:14243394-14243413	None:intergenic	20.0%
!!!	TGTGAAAATATATTTTGCAA+TGG	-	chr3_1:14243595-14243614	Msa0349880:intron	20.0%
!!	TTCACACAATAAACTAATTA+AGG	-	chr3_1:14243677-14243696	Msa0349880:intron	20.0%
!!!	GCCATAAAGTTTTTTTTTTT+TGG	+	chr3_1:14243736-14243755	None:intergenic	20.0%
!!!	CAATGTTAGTAAAAGTTTTA+AGG	+	chr3_1:14243820-14243839	None:intergenic	20.0%
!!!	CTTAAAACTTTTACTAACAT+TGG	-	chr3_1:14243818-14243837	Msa0349880:intron	20.0%
!!	GAAAATTGATATTAGGTATT+TGG	-	chr3_1:14244007-14244026	Msa0349880:intron	20.0%
!!	AAAATTATATTAGACGATGA+TGG	-	chr3_1:14244423-14244442	Msa0349880:intron	20.0%
!	GACAATTCAAAGATGTTATT+AGG	+	chr3_1:14240830-14240849	None:intergenic	25.0%
!	GACAATTCAAAGATGTTATT+AGG	+	chr3_1:14240830-14240849	None:intergenic	25.0%
!	TAATTGCTTGGTTATTGAAA+GGG	-	chr3_1:14241111-14241130	Msa0349880:intron	25.0%
!	CAGATGCATTAAAATTGAAA+AGG	+	chr3_1:14241234-14241253	None:intergenic	25.0%
!	TTTGTTGAAAACTTGGTATT+CGG	-	chr3_1:14241262-14241281	Msa0349880:intron	25.0%
!	TTATTTATGTGTGCTCTTAA+AGG	-	chr3_1:14241494-14241513	Msa0349880:intron	25.0%
!	ATTCAAATCTATCTTAAGAG+AGG	+	chr3_1:14241631-14241650	None:intergenic	25.0%
!!!	TACTATTGCAGTATTTTTAC+AGG	-	chr3_1:14242024-14242043	Msa0349880:intron	25.0%
!	ATATTTGATGAAACACACAA+TGG	-	chr3_1:14242230-14242249	Msa0349880:intron	25.0%
!!!	TGAAATGATGATTGTTTTGA+AGG	+	chr3_1:14242299-14242318	None:intergenic	25.0%
!	AATTTGGAGAAAGATATACA+TGG	+	chr3_1:14242361-14242380	None:intergenic	25.0%
!!!	TTATTTTTCCAACTTTTACG+AGG	-	chr3_1:14242388-14242407	Msa0349880:intron	25.0%
!!	TATTTTTCCAACTTTTACGA+GGG	-	chr3_1:14242389-14242408	Msa0349880:intron	25.0%
!	ACTTAGAAAATATATGGTGA+TGG	-	chr3_1:14242414-14242433	Msa0349880:intron	25.0%
!!!	TTAGCTCAAGGATTTTTTTT+AGG	-	chr3_1:14242482-14242501	Msa0349880:intron	25.0%
!!!	TAGCTCAAGGATTTTTTTTA+GGG	-	chr3_1:14242483-14242502	Msa0349880:intron	25.0%
!	TTATTCTGAATTTCAATCCA+AGG	-	chr3_1:14243060-14243079	Msa0349880:intron	25.0%
!!	GTTCTTTTGTGAAAATACTA+CGG	-	chr3_1:14243144-14243163	Msa0349880:intron	25.0%
!	TACGGAGATATATAACTATT+TGG	-	chr3_1:14243162-14243181	Msa0349880:intron	25.0%
!!!	TGAAAAATATTTTGGGTAAG+AGG	-	chr3_1:14243221-14243240	Msa0349880:intron	25.0%
!!!	CTTTCCCATTTTTAACATAA+TGG	+	chr3_1:14243297-14243316	None:intergenic	25.0%
!	AAAAACAAAAGTTAGAAGGA+TGG	+	chr3_1:14243498-14243517	None:intergenic	25.0%
!	AAGGATTACTCTAAACTTTA+TGG	-	chr3_1:14243696-14243715	Msa0349880:intron	25.0%
!!!	AAGTTTTAAGGACAGTTATA+AGG	+	chr3_1:14243808-14243827	None:intergenic	25.0%
!!!	ATTGTCGGTAAAAGTTTTAA+CGG	-	chr3_1:14243863-14243882	Msa0349880:intron	25.0%
!	CAAAACGAAATAAATAAGCA+TGG	+	chr3_1:14244162-14244181	None:intergenic	25.0%
!!	TGCTTATTTATTTCGTTTTG+TGG	-	chr3_1:14244162-14244181	Msa0349880:intron	25.0%
!	TGTTTGTCTAATATGCAAAA+CGG	-	chr3_1:14244255-14244274	Msa0349880:intron	25.0%
!	TTCAACAATTCTTAAGATCA+TGG	+	chr3_1:14244611-14244630	None:intergenic	25.0%
!	TAAGATGAAAGAAGTTTGAT+CGG	+	chr3_1:14244661-14244680	None:intergenic	25.0%
!	AACTTCTTTCATCTTAAAAC+AGG	-	chr3_1:14244665-14244684	Msa0349880:CDS	25.0%
!	ACTTCTTTCATCTTAAAACA+GGG	-	chr3_1:14244666-14244685	Msa0349880:CDS	25.0%
!	ACGAAAAAAATTGATGAGAT+TGG	+	chr3_1:14244737-14244756	None:intergenic	25.0%
!!	TTCATTTTTAACGTCTCTCA+TGG	-	chr3_1:14240703-14240722	Msa0349880:intron	30.0%
!!	TCATTTTTAACGTCTCTCAT+GGG	-	chr3_1:14240704-14240723	Msa0349880:intron	30.0%
	TTCACAAGTAATCCAAATCT+TGG	-	chr3_1:14240728-14240747	Msa0349880:intron	30.0%
	TGTTATTAGGTCTAGCAAAA+GGG	+	chr3_1:14240817-14240836	None:intergenic	30.0%
	ATGTTATTAGGTCTAGCAAA+AGG	+	chr3_1:14240818-14240837	None:intergenic	30.0%
	AGGGTTCATTGTTATCAAAA+CGG	+	chr3_1:14240852-14240871	None:intergenic	30.0%
	TGTTATTAGGTCTAGCAAAA+GGG	+	chr3_1:14240817-14240836	None:intergenic	30.0%
	ATGTTATTAGGTCTAGCAAA+AGG	+	chr3_1:14240818-14240837	None:intergenic	30.0%
	TCTGGGAGGTAAATAAAATT+TGG	-	chr3_1:14241006-14241025	Msa0349880:intron	30.0%
!	CAAATTATTCTGGAGAACTT+GGG	+	chr3_1:14241060-14241079	None:intergenic	30.0%
!	ACAAATTATTCTGGAGAACT+TGG	+	chr3_1:14241061-14241080	None:intergenic	30.0%
!	TCTCCAGAATAATTTGTCTT+TGG	-	chr3_1:14241064-14241083	Msa0349880:CDS	30.0%
	CTTTCAATAACCAAGCAATT+AGG	+	chr3_1:14241112-14241131	None:intergenic	30.0%
	CTAATTGCTTGGTTATTGAA+AGG	-	chr3_1:14241110-14241129	Msa0349880:intron	30.0%
	TTCACTGTTTAGTGTATCAT+GGG	-	chr3_1:14241134-14241153	Msa0349880:intron	30.0%
!!	AAAATTTTTCAACGGTGTTC+CGG	+	chr3_1:14241296-14241315	None:intergenic	30.0%
!	TATAGCCTCATTTAAAGTGA+AGG	-	chr3_1:14241320-14241339	Msa0349880:intron	30.0%
	ATCACAATATCAAATTTCGG+TGG	+	chr3_1:14241367-14241386	None:intergenic	30.0%
	AAAAGTTGGATTACATGTGT+GGG	+	chr3_1:14241575-14241594	None:intergenic	30.0%
	TTGTGATTAAGTCTGCTAAA+TGG	+	chr3_1:14241682-14241701	None:intergenic	30.0%
	TTAGCAGACTTAATCACAAT+TGG	-	chr3_1:14241683-14241702	Msa0349880:intron	30.0%
	CCAACAGTATTCCATAATAA+AGG	+	chr3_1:14242004-14242023	None:intergenic	30.0%
	CCTTTATTATGGAATACTGT+TGG	-	chr3_1:14242001-14242020	Msa0349880:intron	30.0%
	ATGAAACACACAATGGTATT+GGG	-	chr3_1:14242237-14242256	Msa0349880:intron	30.0%
	AGGGAGACTTAGAAAATATA+TGG	-	chr3_1:14242408-14242427	Msa0349880:intron	30.0%
!!!	GTTGTGCTGTTTTTTTTTTC+AGG	-	chr3_1:14242678-14242697	Msa0349880:intron	30.0%
	CAGGCCATTATGTTAAAAAT+GGG	-	chr3_1:14243290-14243309	Msa0349880:CDS	30.0%
!!!	TTAACTTGCTTGTCGTTTTA+AGG	+	chr3_1:14243414-14243433	None:intergenic	30.0%
!	TAACACCCTTTGAAAATTTG+AGG	-	chr3_1:14243431-14243450	Msa0349880:intron	30.0%
!	AACACCCTTTGAAAATTTGA+GGG	-	chr3_1:14243432-14243451	Msa0349880:intron	30.0%
	TGAACTAATCCTAACAAGTT+GGG	+	chr3_1:14244043-14244062	None:intergenic	30.0%
	ATGAACTAATCCTAACAAGT+TGG	+	chr3_1:14244044-14244063	None:intergenic	30.0%
	TTGTGGTATTTGATATTCAC+AGG	-	chr3_1:14244179-14244198	Msa0349880:intron	30.0%
	ATAGAAACCTATCACTTCTT+TGG	+	chr3_1:14244211-14244230	None:intergenic	30.0%
!	GTATTGGTAACAAAAATGGA+TGG	+	chr3_1:14244353-14244372	None:intergenic	30.0%
	GATATACAACTTTCATTAGC+AGG	+	chr3_1:14244375-14244394	None:intergenic	30.0%
	ATTATAAATGTTGCAACCTG+TGG	+	chr3_1:14244399-14244418	None:intergenic	30.0%
!	TATATTAGACGATGATGGTT+TGG	-	chr3_1:14244428-14244447	Msa0349880:intron	30.0%
!!!	GCTACAACAGAGAATTTTTT+TGG	-	chr3_1:14244462-14244481	Msa0349880:intron	30.0%
	TTTATCTCAAAATTGCAGGT+TGG	-	chr3_1:14244575-14244594	Msa0349880:intron	30.0%
!	AACGTTTGAAACAAGAGAAA+AGG	+	chr3_1:14244638-14244657	None:intergenic	30.0%
	TAACAACTTATCTTCCAAAC+AGG	-	chr3_1:14244701-14244720	Msa0349880:CDS	30.0%
!	ACATCGTTTATAGCTTTTCC+TGG	-	chr3_1:14240539-14240558	Msa0349880:CDS	35.0%
	GATTGCTGAGTTCAATAACA+AGG	+	chr3_1:14240616-14240635	None:intergenic	35.0%
	TGTTATTGAACTCAGCAATC+CGG	-	chr3_1:14240616-14240635	Msa0349880:CDS	35.0%
!!!	AGAGCATTTTCTCTAAGATC+CGG	+	chr3_1:14240638-14240657	None:intergenic	35.0%
	AGATAGATATGTAAGAACCC+TGG	+	chr3_1:14240672-14240691	None:intergenic	35.0%
	ACAAGTAATCCAAATCTTGG+AGG	-	chr3_1:14240731-14240750	Msa0349880:CDS	35.0%
	GGAAATGAGACCTGATAATT+TGG	-	chr3_1:14240977-14240996	Msa0349880:intron	35.0%
!	TGATAATTTGGAGTACGTCT+GGG	-	chr3_1:14240989-14241008	Msa0349880:intron	35.0%
	AGAACTTGGGTTCAATTCTT+GGG	+	chr3_1:14241047-14241066	None:intergenic	35.0%
	CCACCAAAGACAAATTATTC+TGG	+	chr3_1:14241070-14241089	None:intergenic	35.0%
!	CCAGAATAATTTGTCTTTGG+TGG	-	chr3_1:14241067-14241086	Msa0349880:CDS	35.0%
	GTTCACTGTTTAGTGTATCA+TGG	-	chr3_1:14241133-14241152	Msa0349880:intron	35.0%
	AAAACTTGGTATTCGGTCAA+AGG	-	chr3_1:14241269-14241288	Msa0349880:intron	35.0%
	CTTTGCCTTCACTTTAAATG+AGG	+	chr3_1:14241328-14241347	None:intergenic	35.0%
	CAAAAGTTGGATTACATGTG+TGG	+	chr3_1:14241576-14241595	None:intergenic	35.0%
!	CACACATGTAATCCAACTTT+TGG	-	chr3_1:14241574-14241593	Msa0349880:intron	35.0%
	ATGGATATAGTCTGACAATG+CGG	+	chr3_1:14241663-14241682	None:intergenic	35.0%
	ACCAAGTTATTTGAGGAACT+TGG	-	chr3_1:14241977-14241996	Msa0349880:intron	35.0%
	TCCAAGTTCCTCAAATAACT+TGG	+	chr3_1:14241981-14242000	None:intergenic	35.0%
	AGGAACTTGGACCTTTATTA+TGG	-	chr3_1:14241990-14242009	Msa0349880:intron	35.0%
	TTGTGCATGTATCTTACTTG+TGG	-	chr3_1:14242189-14242208	Msa0349880:intron	35.0%
	GATGAAACACACAATGGTAT+TGG	-	chr3_1:14242236-14242255	Msa0349880:intron	35.0%
	GAAGGATTGTAATACGACAA+AGG	+	chr3_1:14242281-14242300	None:intergenic	35.0%
	TGGAGAAAGATATACATGGT+AGG	+	chr3_1:14242357-14242376	None:intergenic	35.0%
	TTTCAAGAGATGTTAGCTCA+AGG	-	chr3_1:14242470-14242489	Msa0349880:intron	35.0%
	GATTTGAACTTCTTTCCTAG+AGG	+	chr3_1:14242544-14242563	None:intergenic	35.0%
!!	GGTCATTTTACAGTTGTTTG+AGG	+	chr3_1:14242568-14242587	None:intergenic	35.0%
	ATTCATAAGAGTCGCACTAA+TGG	+	chr3_1:14242589-14242608	None:intergenic	35.0%
	CAATGTTCTAGCATTACTTC+AGG	-	chr3_1:14242768-14242787	Msa0349880:intron	35.0%
	GAAATGAGATCCTTGTATCA+GGG	+	chr3_1:14243001-14243020	None:intergenic	35.0%
	AGAAATGAGATCCTTGTATC+AGG	+	chr3_1:14243002-14243021	None:intergenic	35.0%
	ACAAGGATCTCATTTCTCAA+TGG	-	chr3_1:14243005-14243024	Msa0349880:intron	35.0%
	TTGGGTAAGAGGAATGAATT+TGG	-	chr3_1:14243232-14243251	Msa0349880:intron	35.0%
	GAATTTGGATTCTCTTTGAC+CGG	-	chr3_1:14243247-14243266	Msa0349880:intron	35.0%
	AAGTTATTGCAACCAAAAGC+CGG	+	chr3_1:14243269-14243288	None:intergenic	35.0%
!!	TTTTGGTTGCAATAACTTGC+AGG	-	chr3_1:14243271-14243290	Msa0349880:intron	35.0%
	GCAGGCCATTATGTTAAAAA+TGG	-	chr3_1:14243289-14243308	Msa0349880:CDS	35.0%
!!!	TTGCTTGTCGTTTTAAGGAA+TGG	+	chr3_1:14243409-14243428	None:intergenic	35.0%
!	GCAACCCTCAAATTTTCAAA+GGG	+	chr3_1:14243439-14243458	None:intergenic	35.0%
!	AGCAACCCTCAAATTTTCAA+AGG	+	chr3_1:14243440-14243459	None:intergenic	35.0%
	AGGACAGTTATAAGGAATGT+TGG	+	chr3_1:14243800-14243819	None:intergenic	35.0%
!	ACTTACAAACCCAACTTGTT+AGG	-	chr3_1:14244031-14244050	Msa0349880:intron	35.0%
	TTAGTTCATCTACATCACGA+AGG	-	chr3_1:14244055-14244074	Msa0349880:intron	35.0%
	TAGTTCATCTACATCACGAA+GGG	-	chr3_1:14244056-14244075	Msa0349880:intron	35.0%
	GTTAACACCAAAGAAGTGAT+AGG	-	chr3_1:14244201-14244220	Msa0349880:intron	35.0%
!!	GCAGGTATTGGTAACAAAAA+TGG	+	chr3_1:14244357-14244376	None:intergenic	35.0%
	CAACTTTCATTAGCAGGTAT+TGG	+	chr3_1:14244369-14244388	None:intergenic	35.0%
	TGAAAGTTGTATATCTCCAC+AGG	-	chr3_1:14244380-14244399	Msa0349880:intron	35.0%
!!!	TCGAGTTTTGAACATGATGT+TGG	-	chr3_1:14244491-14244510	Msa0349880:intron	35.0%
	CTCGTTTATCTCAAAATTGC+AGG	-	chr3_1:14244571-14244590	Msa0349880:intron	35.0%
	TTTCGTGTAAGTACTTCTTG+TGG	-	chr3_1:14244751-14244770	Msa0349880:CDS	35.0%
	TTCTTTGTTGAGAGCGATTG+AGG	+	chr3_1:14240515-14240534	None:intergenic	40.0%
!	ATGATCAGTGGTGCTAGATT+GGG	+	chr3_1:14240573-14240592	None:intergenic	40.0%
!	TATGATCAGTGGTGCTAGAT+TGG	+	chr3_1:14240574-14240593	None:intergenic	40.0%
	AATCTAGCACCACTGATCAT+AGG	-	chr3_1:14240573-14240592	Msa0349880:CDS	40.0%
!	AAAGGGTTCATTGTTGGTAG+AGG	+	chr3_1:14240800-14240819	None:intergenic	40.0%
	CTAGCAAAAGGGTTCATTGT+TGG	+	chr3_1:14240806-14240825	None:intergenic	40.0%
	TGTTTACGCTTCACTTCTCA+GGG	-	chr3_1:14240955-14240974	Msa0349880:intron	40.0%
	CAGACGTACTCCAAATTATC+AGG	+	chr3_1:14240990-14241009	None:intergenic	40.0%
!	CTGATAATTTGGAGTACGTC+TGG	-	chr3_1:14240988-14241007	Msa0349880:intron	40.0%
	GAGAACTTGGGTTCAATTCT+TGG	+	chr3_1:14241048-14241067	None:intergenic	40.0%
	TTGGCAACTTCTCCAAAAGT+TGG	+	chr3_1:14241589-14241608	None:intergenic	40.0%
!	AGCACGTTTAGTTTAACGCT+TGG	+	chr3_1:14241608-14241627	None:intergenic	40.0%
!	TCAGAGCACCAAGTTATTTG+AGG	-	chr3_1:14241970-14241989	Msa0349880:intron	40.0%
	TAAGTCTCCCTCGTAAAAGT+TGG	+	chr3_1:14242399-14242418	None:intergenic	40.0%
!	AATTTGAGGGTTGCTAGTCT+TGG	-	chr3_1:14243445-14243464	Msa0349880:intron	40.0%
	CTAGATTGGGTAGAATCACC+AGG	+	chr3_1:14240560-14240579	None:intergenic	45.0%
	TAGCACCACTGATCATAGGA+TGG	-	chr3_1:14240577-14240596	Msa0349880:CDS	45.0%
	GTAAGCCATCCTATGATCAG+TGG	+	chr3_1:14240585-14240604	None:intergenic	45.0%
	ATCACAACGCCTCCAAGATT+TGG	+	chr3_1:14240743-14240762	None:intergenic	45.0%
	GTGTTTACGCTTCACTTCTC+AGG	-	chr3_1:14240954-14240973	Msa0349880:intron	45.0%
	GTTTACGCTTCACTTCTCAG+GGG	-	chr3_1:14240956-14240975	Msa0349880:intron	45.0%
!	TAATTTGGAGTACGTCTGGG+AGG	-	chr3_1:14240992-14241011	Msa0349880:intron	45.0%
	ACTTGGGTTCAATTCTTGGG+TGG	+	chr3_1:14241044-14241063	None:intergenic	45.0%
	ACCACTTGAGCCTAATTGCT+TGG	-	chr3_1:14241099-14241118	Msa0349880:CDS	45.0%
	ACCAAGCAATTAGGCTCAAG+TGG	+	chr3_1:14241103-14241122	None:intergenic	45.0%
	TTGGTATTCGGTCAAAGGAC+CGG	-	chr3_1:14241274-14241293	Msa0349880:intron	45.0%
!!	AGATTCGGTGGTGAAAGAGT+AGG	+	chr3_1:14242721-14242740	None:intergenic	45.0%
	GATTGTGAGGGAGAGAGATT+CGG	+	chr3_1:14242736-14242755	None:intergenic	45.0%
!!	CACACTCGAGTTGATTGTGA+GGG	+	chr3_1:14242748-14242767	None:intergenic	45.0%
!!	CAACTTGTTACATGCAGCCT+TGG	+	chr3_1:14243080-14243099	None:intergenic	45.0%
!!	GATTCTCTTTGACCGGCTTT+TGG	-	chr3_1:14243254-14243273	Msa0349880:intron	45.0%
!!	GTTGCTAGTCTTGGAGTCAT+TGG	-	chr3_1:14243454-14243473	Msa0349880:intron	45.0%
	ATCAAAAGCCTCGACAAACG+AGG	+	chr3_1:14244540-14244559	None:intergenic	45.0%
	TTGGCATCTTTGAGCCTGTT+TGG	+	chr3_1:14244718-14244737	None:intergenic	45.0%
!!!	AATATTTTTTTTTTTGTTTA+AGG	-	chr3_1:14242606-14242625	Msa0349880:intron	5.0%
	ATGCTCTCTATGTGCTCTCC+AGG	-	chr3_1:14240651-14240670	Msa0349880:intron	50.0%
	TGCTCTCTATGTGCTCTCCA+GGG	-	chr3_1:14240652-14240671	Msa0349880:intron	50.0%
!!	GCACACTCGAGTTGATTGTG+AGG	+	chr3_1:14242749-14242768	None:intergenic	50.0%
	TGGCATCTCACCCTGATACA+AGG	-	chr3_1:14242988-14243007	Msa0349880:intron	50.0%
!!	GCTAGTCTTGGAGTCATTGG+TGG	-	chr3_1:14243457-14243476	Msa0349880:intron	50.0%
!	AGTCATTGGTGGCTCGATGA+AGG	-	chr3_1:14243468-14243487	Msa0349880:intron	50.0%
	TGTGAGGGAGAGAGATTCGG+TGG	+	chr3_1:14242733-14242752	None:intergenic	55.0%
	AGCCTCGACAAACGAGGTGA+GGG	+	chr3_1:14244534-14244553	None:intergenic	55.0%
	AAGCCTCGACAAACGAGGTG+AGG	+	chr3_1:14244535-14244554	None:intergenic	55.0%
	CTCGACAAACGAGGTGAGGG+TGG	+	chr3_1:14244531-14244550	None:intergenic	60.0%
	CACCCTCACCTCGTTTGTCG+AGG	-	chr3_1:14244529-14244548	Msa0349880:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	14240497	14244825	14240497	ID=Msa0349880;Name=Msa0349880
chr3_1	mRNA	14240497	14244825	14240497	ID=Msa0349880-mRNA-1;Parent=Msa0349880;Name=Msa0349880-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|0\|0\|1\|1\|1\|8\|0\|304
chr3_1	exon	14244649	14244825	14244649	ID=Msa0349880-mRNA-1:exon:3513;Parent=Msa0349880-mRNA-1
chr3_1	exon	14243277	14243348	14243277	ID=Msa0349880-mRNA-1:exon:3512;Parent=Msa0349880-mRNA-1
chr3_1	exon	14242533	14242622	14242533	ID=Msa0349880-mRNA-1:exon:3511;Parent=Msa0349880-mRNA-1
chr3_1	exon	14242296	14242338	14242296	ID=Msa0349880-mRNA-1:exon:3510;Parent=Msa0349880-mRNA-1
chr3_1	exon	14241833	14241939	14241833	ID=Msa0349880-mRNA-1:exon:3509;Parent=Msa0349880-mRNA-1
chr3_1	exon	14241026	14241121	14241026	ID=Msa0349880-mRNA-1:exon:3508;Parent=Msa0349880-mRNA-1
chr3_1	exon	14240730	14240920	14240730	ID=Msa0349880-mRNA-1:exon:3507;Parent=Msa0349880-mRNA-1
chr3_1	exon	14240497	14240635	14240497	ID=Msa0349880-mRNA-1:exon:3506;Parent=Msa0349880-mRNA-1
chr3_1	CDS	14244649	14244825	14244649	ID=Msa0349880-mRNA-1:cds;Parent=Msa0349880-mRNA-1
chr3_1	CDS	14243277	14243348	14243277	ID=Msa0349880-mRNA-1:cds;Parent=Msa0349880-mRNA-1
chr3_1	CDS	14242533	14242622	14242533	ID=Msa0349880-mRNA-1:cds;Parent=Msa0349880-mRNA-1
chr3_1	CDS	14242296	14242338	14242296	ID=Msa0349880-mRNA-1:cds;Parent=Msa0349880-mRNA-1
chr3_1	CDS	14241833	14241939	14241833	ID=Msa0349880-mRNA-1:cds;Parent=Msa0349880-mRNA-1
chr3_1	CDS	14241026	14241121	14241026	ID=Msa0349880-mRNA-1:cds;Parent=Msa0349880-mRNA-1
chr3_1	CDS	14240730	14240920	14240730	ID=Msa0349880-mRNA-1:cds;Parent=Msa0349880-mRNA-1
chr3_1	CDS	14240497	14240635	14240497	ID=Msa0349880-mRNA-1:cds;Parent=Msa0349880-mRNA-1

Gene Sequence

>Msa0349880

ATGGCACACTTTACTCCTCAATCGCTCTCAACAAAGAACGATACATCGTTTATAGCTTTTCCTGGTGATTCTACCCAATCTAGCACCACTGATCATAGGATGGCTTACATGCAAAGCCTTGTTATTGAACTCAGCAATCCGGATCTTAGAGAAAATGCTCTCTATGTGCTCTCCAGGAGCACCAAGTTATTTGAGGAACTTGGACCTTTATTATGGAATACTGTTGGTACTATTGCAGTATTTTTACAGGAAATACTTTCAATATATCCTACTCTTTCACCACCGAATCTCTCTCCCTCACAATCAACTCGAGTGTGCAATGTTCTAGCATTACTTCAGTGTGTGGCATCTCACCCTGATACAAGGATCTCATTTCTCAATGCTAATATGCCTTTATATTTATATCCATTCCTTAAAACGACAAGCAAGTTAACACCCTTTGAAAATTTGAGGGTTGCTAGTCTTGGAGTCATTGGTGGCTCGATGAAGGTTAACACCAAAGAAGTGATAGGTTTCTATCTCTCAAGTGAGATAATTTCACTATGTTTGTCTAATATGCAAAACGGCAATGAATTGACAAAAATTGTTGCAACATTTATAATTCTGAAAATTATATTAGACGATGATGGTTTGGCTCGTGTTTGTGCTACAACAGAGAATTTTTTTGGAGTATGTCGAGTTTTGAACATGATGTTGGAAGATCTTGAGAATCCACCCTCACCTCGTTTGTCGAGGCTTTTGATTTCATGTTATTCTCGTTTATCTCAAAATTGCAGGGCTAGAGTTGCATTAACAACTTATCTTCCAAACAGGCTCAAAGATGCCAATCTCATCAATTTTTTTCGTGTAAGTACTTCTTGTGGTATAAATATAAATTTGATTCAGAATTTGTTTGATACACCTAATATGATATAA

Protein sequence

>Msa0349880

MAHFTPQSLSTKNDTSFIAFPGDSTQSSTTDHRMAYMQSLVIELSNPDLRENALYVLSRSTKLFEELGPLLWNTVGTIAVFLQEILSIYPTLSPPNLSPSQSTRVCNVLALLQCVASHPDTRISFLNANMPLYLYPFLKTTSKLTPFENLRVASLGVIGGSMKVNTKEVIGFYLSSEIISLCLSNMQNGNELTKIVATFIILKIILDDDGLARVCATTENFFGVCRVLNMMLEDLENPPSPRLSRLLISCYSRLSQNCRARVALTTYLPNRLKDANLINFFRVSTSCGININLIQNLFDTPNMI*