AlfalfaGEDB | Msa0350080

M. sativa cultivar zhongmu-4 / Msa0350080

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350080	XP_003598636.1	83.389	301	13	2	1	264	1	301	7.73e-172	486

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350080	sp\|Q6P819\|CNOT9_XENTR	44.828	261	110	1	40	266	28	288	1.06e-68	217

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350080	Q2HW81	83.389	301	13	2	1	264	1	301	3.69e-172	486

TFs/TRs:

Gene ID	Type	Classification
Msa0350080	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350080	MtrunA17_Chr7g0224601	53.795	303	99	3	12	273	2	304	7.48e-93	276
Msa0350080	MtrunA17_Chr1g0177151	53.543	254	83	2	1	220	1	253	5.09e-90	268
Msa0350080	MtrunA17_Chr8g0392781	45.797	345	115	4	1	273	1	345	9.71e-89	268
Msa0350080	MtrunA17_Chr3g0099561	51.825	274	97	2	35	273	26	299	3.24e-85	257
Msa0350080	MtrunA17_Chr3g0083811	97.414	116	3	0	149	264	1	116	1.55e-76	228
Msa0350080	MtrunA17_Chr5g0444621	51.429	210	68	1	67	242	52	261	5.37e-63	199
Msa0350080	MtrunA17_Chr6g0477171	52.041	196	60	1	59	220	48	243	1.00e-59	190
Msa0350080	MtrunA17_Chr3g0083821	62.338	77	29	0	51	127	10	86	2.37e-26	100
Msa0350080	MtrunA17_Chr6g0477181	57.627	59	22	1	1	56	1	59	4.63e-12	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350080	AT3G20800.1	48.951	286	112	1	22	273	26	311	2.67e-86	260
Msa0350080	AT5G12980.1	45.455	275	115	2	28	267	28	302	9.59e-77	236
Msa0350080	AT2G32550.2	28.980	245	124	5	50	248	67	307	3.20e-21	91.7
Msa0350080	AT2G32550.3	29.060	234	116	5	61	248	39	268	5.32e-21	90.5
Msa0350080	AT2G32550.1	28.241	216	105	5	79	248	2	213	4.13e-16	75.9

Find 44 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGGAACTTGGACCTTTATTA+TGG	0.221177	3_1:-14638930	Msa0350080:CDS
CTCGCTTATCTCAAAATTGC+AGG	0.298861	3_1:-14636005	Msa0350080:intron
AGAAATGAGATCCTTGTATC+AGG	0.301701	3_1:+14637923	None:intergenic
ATAGAAACCTATGACTTCTT+TGG	0.317203	3_1:+14636368	None:intergenic
CAATGTTCTTGCACTACTTC+AGG	0.367374	3_1:-14638153	Msa0350080:intron
TATATTAGACGATGATGGTT+TGG	0.376298	3_1:-14636148	Msa0350080:CDS
TTGGCATCTTTGAGCCTGTT+TGG	0.379455	3_1:+14635863	None:intergenic
CCAACAGTATTCCATAATAA+AGG	0.383147	3_1:+14638919	None:intergenic
GTTAACACCAAAGAAGTCAT+AGG	0.420089	3_1:-14636375	Msa0350080:CDS
TGTTGTTACATGAGAATGTT+GGG	0.422120	3_1:-14635375	Msa0350080:CDS
TCAGAGCACCAAGTTATTTG+AGG	0.428345	3_1:-14638950	Msa0350080:intron
TAACAACTTATCTTCCAAAC+AGG	0.438040	3_1:-14635877	Msa0350080:CDS
TTCTTTGTTGAGAGCGATTG+AGG	0.439462	3_1:+14640121	None:intergenic
GATTGTGAGGGAGAGAGATT+CGG	0.440290	3_1:+14638188	None:intergenic
ATTCTAACACCACTGATCAT+AGG	0.442748	3_1:-14640069	Msa0350080:CDS
AAAATTATATTAGACGATGA+TGG	0.467412	3_1:-14636153	Msa0350080:CDS
CACCCTCACCTCGTTTGTTG+AGG	0.472935	3_1:-14636047	Msa0350080:CDS
TGTTATTGAACTCAGCAATC+CGG	0.481393	3_1:-14640026	Msa0350080:CDS
ACCAAGTTATTTGAGGAACT+TGG	0.485648	3_1:-14638943	Msa0350080:CDS
AGATTCGGTGGTGAAAGAGT+AGG	0.488495	3_1:+14638203	None:intergenic
AACCGAGTTCCTTTAGAAGC+AGG	0.491153	3_1:-14635349	Msa0350080:CDS
CCTTTATTATGGAATACTGT+TGG	0.492405	3_1:-14638919	Msa0350080:CDS
CATCCTCTACCTGCTTCTAA+AGG	0.500981	3_1:+14635340	None:intergenic
GTTCCTTTAGAAGCAGGTAG+AGG	0.520910	3_1:-14635343	Msa0350080:CDS
TCCAAGTTCCTCAAATAACT+TGG	0.522228	3_1:+14638942	None:intergenic
TGGCATCTCACCCTGATACA+AGG	0.537570	3_1:-14637934	Msa0350080:CDS
CTGTTGTTACATGAGAATGT+TGG	0.540471	3_1:-14635376	Msa0350080:CDS
AGCCTCAACAAACGAGGTGA+GGG	0.559488	3_1:+14636045	None:intergenic
TGTTTGTCTAATATGCAAAA+CGG	0.565201	3_1:-14636321	Msa0350080:CDS
ACAAGGATCTCATTTCTCAA+TGG	0.566776	3_1:-14637917	Msa0350080:CDS
AAGCCTCAACAAACGAGGTG+AGG	0.569309	3_1:+14636044	None:intergenic
TGCTCTCTATGTGCTCTCCA+AGG	0.584461	3_1:-14639990	Msa0350080:intron
GAAATGAGATCCTTGTATCA+GGG	0.596244	3_1:+14637924	None:intergenic
CACACTCGAGTTGATTGTGA+GGG	0.603583	3_1:+14638176	None:intergenic
TAACACCACTGATCATAGGA+TGG	0.625981	3_1:-14640065	Msa0350080:CDS
CTCAACAAACGAGGTGAGGG+TGG	0.629401	3_1:+14636048	None:intergenic
TACCTGCTTCTAAAGGAACT+CGG	0.631809	3_1:+14635347	None:intergenic
GATTGCTGAGTTCAATAACA+AGG	0.649486	3_1:+14640029	None:intergenic
ATCAAAAGCCTCAACAAACG+AGG	0.660997	3_1:+14636039	None:intergenic
GCACACTCGAGTTGATTGTG+AGG	0.665692	3_1:+14638175	None:intergenic
GTAAGCCATCCTATGATCAG+TGG	0.669763	3_1:+14640060	None:intergenic
TCAGTGGTGTTAGAATCACC+AGG	0.685443	3_1:+14640076	None:intergenic
TGTGAGGGAGAGAGATTCGG+TGG	0.689243	3_1:+14638191	None:intergenic
GTTGTTACATGAGAATGTTG+GGG	0.746517	3_1:-14635374	Msa0350080:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTTATAATTGAATTGAA+AGG	-	chr3_1:14635693-14635712	Msa0350080:intron	10.0%
!!!	TTTTTATAATTGAATTGAAA+GGG	-	chr3_1:14635694-14635713	Msa0350080:intron	10.0%
!!	GAAAAATAAAAACATAAATT+TGG	+	chr3_1:14636932-14636951	None:intergenic	10.0%
!!!	TGAATATTTTTTTTTGTTTA+AGG	-	chr3_1:14637159-14637178	Msa0350080:intron	10.0%
!!!	CATATATATTTTTTACATTA+AGG	+	chr3_1:14637474-14637493	None:intergenic	10.0%
!!!	TAATTTTTTTTTGTAGTTTT+TGG	-	chr3_1:14638124-14638143	Msa0350080:intron	10.0%
!!!	ATACAGTTTTTTTTTTTTTT+TGG	+	chr3_1:14638617-14638636	None:intergenic	10.0%
!!	AAAAAAAAAAAAAAACTGTA+TGG	-	chr3_1:14638616-14638635	Msa0350080:intron	10.0%
!!!	TTAAAAGATATATATTTTAG+CGG	-	chr3_1:14638655-14638674	Msa0350080:intron	10.0%
!!	AGTTATAATAAATTAATTGT+CGG	-	chr3_1:14638747-14638766	Msa0350080:intron	10.0%
!!!	TACAATAATATCTAATTTTA+GGG	+	chr3_1:14638801-14638820	None:intergenic	10.0%
!!	ATTATATGAAAATTGATATT+AGG	-	chr3_1:14638899-14638918	Msa0350080:CDS	10.0%
!!	ATATTAAATTATATCATATC+AGG	+	chr3_1:14639711-14639730	None:intergenic	10.0%
!!	ATTAGTTAATAATAAATCAA+TGG	+	chr3_1:14639845-14639864	None:intergenic	10.0%
!!!	GAACTTTTATACTAAAATTT+CGG	-	chr3_1:14636440-14636459	Msa0350080:intron	15.0%
!!	ATAGATTCATAATCTAAAAA+TGG	+	chr3_1:14636877-14636896	None:intergenic	15.0%
!!	AACTACAAAAAAAAATTACT+GGG	+	chr3_1:14638122-14638141	None:intergenic	15.0%
!!	AAACTACAAAAAAAAATTAC+TGG	+	chr3_1:14638123-14638142	None:intergenic	15.0%
!!!	TTTGCAAAATATTTTGTTTT+TGG	-	chr3_1:14638252-14638271	Msa0350080:intron	15.0%
!!!	ATATTTCTTTTTGTAGTTTT+TGG	+	chr3_1:14638323-14638342	None:intergenic	15.0%
!!	GACAATTAATTTATTATAAC+TGG	+	chr3_1:14638748-14638767	None:intergenic	15.0%
!!!	CTACAATAATATCTAATTTT+AGG	+	chr3_1:14638802-14638821	None:intergenic	15.0%
!!	AAAATTGATATTAGGTATTT+GGG	-	chr3_1:14638907-14638926	Msa0350080:CDS	15.0%
!!	TTAAGATTAAAAGTTTAATC+AGG	+	chr3_1:14639559-14639578	None:intergenic	15.0%
!!!	TAAACTTTTAATCTTAAAAC+AGG	-	chr3_1:14639562-14639581	Msa0350080:intron	15.0%
!!!	AAACTTTTAATCTTAAAACA+GGG	-	chr3_1:14639563-14639582	Msa0350080:intron	15.0%
!!!	TTCATTTTTAATGTCTTTCA+TGG	-	chr3_1:14635536-14635555	Msa0350080:intron	20.0%
!!!	TCATTTTTAATGTCTTTCAT+GGG	-	chr3_1:14635537-14635556	Msa0350080:intron	20.0%
!!	TAATTGTTTCGTTATTGAAA+GGG	-	chr3_1:14635889-14635908	Msa0350080:CDS	20.0%
!!!	AAATTTTTTCAATGGTATTC+CGG	+	chr3_1:14636069-14636088	None:intergenic	20.0%
!!!	AAGCTTCTAAATTTTTTCAA+TGG	+	chr3_1:14636077-14636096	None:intergenic	20.0%
!!!	GATAGTGTGATTTTTTTTAA+TGG	-	chr3_1:14636156-14636175	Msa0350080:CDS	20.0%
!!!	AATCTTGATTTTACCATAAA+TGG	+	chr3_1:14636226-14636245	None:intergenic	20.0%
!!!	TTACCATGTTTGTTTTATTT+TGG	-	chr3_1:14636418-14636437	Msa0350080:intron	20.0%
!!!	ATTACATATTATTTTCTAGC+TGG	-	chr3_1:14636621-14636640	Msa0350080:intron	20.0%
!!!	AATTTAGTTTTTAAACCTCT+AGG	-	chr3_1:14637081-14637100	Msa0350080:intron	20.0%
!!!	ATTGATTTTCATGTATTTTG+GGG	+	chr3_1:14637411-14637430	None:intergenic	20.0%
!!!	GATTGATTTTCATGTATTTT+GGG	+	chr3_1:14637412-14637431	None:intergenic	20.0%
!!!	TGATTGATTTTCATGTATTT+TGG	+	chr3_1:14637413-14637432	None:intergenic	20.0%
!!!	AATGTTTTTTTTATAGTGTG+TGG	-	chr3_1:14637521-14637540	Msa0350080:intron	20.0%
!!	TATGGAGATATATAACTATT+TGG	-	chr3_1:14637715-14637734	Msa0350080:intron	20.0%
!!	AGGAATGGATATAAATATAA+AGG	+	chr3_1:14637945-14637964	None:intergenic	20.0%
!!!	TTTTGTTTTTGGCTAAAATA+TGG	-	chr3_1:14638059-14638078	Msa0350080:intron	20.0%
!!!	TATTTTGTTTTTGGAAATAG+TGG	-	chr3_1:14638261-14638280	Msa0350080:intron	20.0%
!!!	TCAAAAACAAAATATTTTGC+AGG	-	chr3_1:14638295-14638314	Msa0350080:intron	20.0%
!!!	CAAAAACAAAATATTTTGCA+GGG	-	chr3_1:14638296-14638315	Msa0350080:intron	20.0%
!!	ACTACAAAAAGAAATATTAC+AGG	-	chr3_1:14638326-14638345	Msa0350080:intron	20.0%
!!	CTACAAAAAGAAATATTACA+GGG	-	chr3_1:14638327-14638346	Msa0350080:intron	20.0%
!!	AAAAAACAAAGGCTAAAATA+TGG	+	chr3_1:14638391-14638410	None:intergenic	20.0%
!!!	AAATATATTTTCACATTGCA+AGG	+	chr3_1:14638480-14638499	None:intergenic	20.0%
!!	TTCACACAATAAACTAATTA+AGG	-	chr3_1:14638559-14638578	Msa0350080:intron	20.0%
!!!	CAATGTTAGTAAAAGTTTTA+AGG	+	chr3_1:14638719-14638738	None:intergenic	20.0%
!!!	CTTAAAACTTTTACTAACAT+TGG	-	chr3_1:14638717-14638736	Msa0350080:intron	20.0%
!!	ATTGTCGGTAAAAAATTTAA+CGG	-	chr3_1:14638762-14638781	Msa0350080:intron	20.0%
!!	GAAAATTGATATTAGGTATT+TGG	-	chr3_1:14638906-14638925	Msa0350080:CDS	20.0%
!!	AAAATTATATTAGACGATGA+TGG	-	chr3_1:14639322-14639341	Msa0350080:intron	20.0%
!!	ATTGAATTCTCTCTTTATAA+AGG	+	chr3_1:14640004-14640023	None:intergenic	20.0%
!	TTCACAAGTAATACAAATCT+TGG	-	chr3_1:14635561-14635580	Msa0350080:intron	25.0%
!	ATGAGAACAAAGATGTTATT+AGG	+	chr3_1:14635663-14635682	None:intergenic	25.0%
!	CTTTCAATAACGAAACAATT+AGG	+	chr3_1:14635890-14635909	None:intergenic	25.0%
!	CTAATTGTTTCGTTATTGAA+AGG	-	chr3_1:14635888-14635907	Msa0350080:CDS	25.0%
!!!	CTTTTCAATTTTAATGCATC+TGG	-	chr3_1:14636005-14636024	Msa0350080:intron	25.0%
!!	ATCAATTTTTGTCGAAAACT+TGG	-	chr3_1:14636028-14636047	Msa0350080:CDS	25.0%
!!	CTTTACTTTGACTTTAAATG+AGG	+	chr3_1:14636108-14636127	None:intergenic	25.0%
!	AAAATCACACTATCAAATGT+CGG	+	chr3_1:14636150-14636169	None:intergenic	25.0%
!	GTTCCAAAATAAAACAAACA+TGG	+	chr3_1:14636424-14636443	None:intergenic	25.0%
!!!	TACTATTGCAGTATTTTTAC+AGG	-	chr3_1:14636579-14636598	Msa0350080:intron	25.0%
!	ATATTTGATGAAACACACAA+TGG	-	chr3_1:14636785-14636804	Msa0350080:intron	25.0%
!	AATTTGGAGAAAGATATACA+TGG	+	chr3_1:14636916-14636935	None:intergenic	25.0%
!!!	TTATTTTTCCAACTTTTACG+AGG	-	chr3_1:14636943-14636962	Msa0350080:intron	25.0%
!!	TATTTTTCCAACTTTTACGA+GGG	-	chr3_1:14636944-14636963	Msa0350080:intron	25.0%
!	ACTTAGAAAATATATGGTGA+TGG	-	chr3_1:14636969-14636988	Msa0350080:intron	25.0%
!!!	TTAGCTCAAGGATTTTTTTT+AGG	-	chr3_1:14637037-14637056	Msa0350080:intron	25.0%
!!!	TAGCTCAAGGATTTTTTTTA+GGG	-	chr3_1:14637038-14637057	Msa0350080:intron	25.0%
!!!	TTGTGCTGTTTTTTTTTTTC+AGG	-	chr3_1:14637232-14637251	Msa0350080:intron	25.0%
!!!	TTGATTTTCATGTATTTTGG+GGG	+	chr3_1:14637410-14637429	None:intergenic	25.0%
!	TTATTCTGAATTACAATCCA+AGG	-	chr3_1:14637613-14637632	Msa0350080:intron	25.0%
!!	GTTCTTTTGTGAAAATACTA+TGG	-	chr3_1:14637697-14637716	Msa0350080:intron	25.0%
!!!	TGAAAAGTGTTTTGAATAAG+AGG	-	chr3_1:14637774-14637793	Msa0350080:intron	25.0%
!!!	GAAAAGTGTTTTGAATAAGA+GGG	-	chr3_1:14637775-14637794	Msa0350080:intron	25.0%
!!!	CTTTCCCATTTTTAACATAA+TGG	+	chr3_1:14637850-14637869	None:intergenic	25.0%
!	GCTGCATATAATAACAAAAA+AGG	+	chr3_1:14637915-14637934	None:intergenic	25.0%
!!!	TTAACTTGCTTGTTGTTTTA+AGG	+	chr3_1:14637965-14637984	None:intergenic	25.0%
!	AAAAACAAAAGTTAGAAGGA+TGG	+	chr3_1:14638049-14638068	None:intergenic	25.0%
!!!	ATCCTTCTAACTTTTGTTTT+TGG	-	chr3_1:14638048-14638067	Msa0350080:intron	25.0%
!	TAAGGATTCTCTAAACTTTA+TGG	-	chr3_1:14638577-14638596	Msa0350080:intron	25.0%
!!!	AAGTTTTAAGGACAGTTATA+AGG	+	chr3_1:14638707-14638726	None:intergenic	25.0%
!	CAAAACGAAATAAATAAGCA+TGG	+	chr3_1:14639061-14639080	None:intergenic	25.0%
!!	TGCTTATTTATTTCGTTTTG+TGG	-	chr3_1:14639061-14639080	Msa0350080:intron	25.0%
!	TGTTTGTCTAATATGCAAAA+CGG	-	chr3_1:14639154-14639173	Msa0350080:intron	25.0%
!	TTCAACAATTCTTAAGATCA+TGG	+	chr3_1:14639510-14639529	None:intergenic	25.0%
!	ACGAAAAAAATTGATGAGAT+TGG	+	chr3_1:14639634-14639653	None:intergenic	25.0%
!	ATATTACAAGACATGCTATT+AGG	-	chr3_1:14639761-14639780	Msa0350080:intron	25.0%
!	TATTACAAGACATGCTATTA+GGG	-	chr3_1:14639762-14639781	Msa0350080:intron	25.0%
!!!	TAAGTTTTGTGACACATTTA+TGG	-	chr3_1:14639901-14639920	Msa0350080:intron	25.0%
!!	CATTTATGGTATTTTCAAAG+TGG	-	chr3_1:14639915-14639934	Msa0350080:intron	25.0%
!	CTAGATATTGTTTCAATTTC+AGG	-	chr3_1:14640050-14640069	Msa0350080:CDS	25.0%
	AGATAGATATGTAAGAACCT+TGG	+	chr3_1:14635505-14635524	None:intergenic	30.0%
	ACAAGTAATACAAATCTTGG+AGG	-	chr3_1:14635564-14635583	Msa0350080:intron	30.0%
	TGTTATTAGGTCTAGCAAAA+GGG	+	chr3_1:14635650-14635669	None:intergenic	30.0%
	ATGTTATTAGGTCTAGCAAA+AGG	+	chr3_1:14635651-14635670	None:intergenic	30.0%
!	TCTCCAGAATAATTTGTCTT+TGG	-	chr3_1:14635842-14635861	Msa0350080:intron	30.0%
	TTCACTGTTTAGTGTATCAT+GGG	-	chr3_1:14635912-14635931	Msa0350080:intron	30.0%
	TTTGTCGAAAACTTGGTATT+CGG	-	chr3_1:14636035-14636054	Msa0350080:CDS	30.0%
	CCAACAGTATTCCATAATAA+AGG	+	chr3_1:14636559-14636578	None:intergenic	30.0%
	CCTTTATTATGGAATACTGT+TGG	-	chr3_1:14636556-14636575	Msa0350080:intron	30.0%
	ATGAAACACACAATGGTATT+GGG	-	chr3_1:14636792-14636811	Msa0350080:intron	30.0%
	TGAAATGATGATTGTTCTGA+AGG	+	chr3_1:14636854-14636873	None:intergenic	30.0%
	AGGGAGACTTAGAAAATATA+TGG	-	chr3_1:14636963-14636982	Msa0350080:intron	30.0%
	TTGAATAAGAGGGATGAATT+TGG	-	chr3_1:14637785-14637804	Msa0350080:intron	30.0%
	CAGGCCATTATGTTAAAAAT+GGG	-	chr3_1:14637843-14637862	Msa0350080:intron	30.0%
!!!	TTGCTTGTTGTTTTAAGGAA+TGG	+	chr3_1:14637960-14637979	None:intergenic	30.0%
	TAACACAGTTTGAGAATTTG+AGG	-	chr3_1:14637982-14638001	Msa0350080:intron	30.0%
	AACACAGTTTGAGAATTTGA+GGG	-	chr3_1:14637983-14638002	Msa0350080:intron	30.0%
	AGCCAAAAACAAAAGTTAGA+AGG	+	chr3_1:14638053-14638072	None:intergenic	30.0%
	ACATGATGATTGAACCTATT+CGG	-	chr3_1:14638216-14638235	Msa0350080:CDS	30.0%
!!	AGACTATTTTTCTACCGAAT+AGG	+	chr3_1:14638233-14638252	None:intergenic	30.0%
!!!	TTTGTTTTTGGAAATAGTGG+AGG	-	chr3_1:14638264-14638283	Msa0350080:intron	30.0%
!!!	TTGTTTTTGGAAATAGTGGA+GGG	-	chr3_1:14638265-14638284	Msa0350080:intron	30.0%
	TCAGCTGCATTAAAAAACAA+AGG	+	chr3_1:14638402-14638421	None:intergenic	30.0%
	TGAACTAATCCTAACAAGTT+GGG	+	chr3_1:14638942-14638961	None:intergenic	30.0%
	ATGAACTAATCCTAACAAGT+TGG	+	chr3_1:14638943-14638962	None:intergenic	30.0%
	TTGTGGTATTTGATATTCAC+AGG	-	chr3_1:14639078-14639097	Msa0350080:intron	30.0%
	ATAGAAACCTATGACTTCTT+TGG	+	chr3_1:14639110-14639129	None:intergenic	30.0%
	GATATACAACTTTCATTAGC+AGG	+	chr3_1:14639274-14639293	None:intergenic	30.0%
	ATTATAAATGTTGCAACCTG+TGG	+	chr3_1:14639298-14639317	None:intergenic	30.0%
!	TATATTAGACGATGATGGTT+TGG	-	chr3_1:14639327-14639346	Msa0350080:intron	30.0%
!!!	GCTACAACAGAGAATTTTTT+TGG	-	chr3_1:14639361-14639380	Msa0350080:intron	30.0%
	TAACAACTTATCTTCCAAAC+AGG	-	chr3_1:14639598-14639617	Msa0350080:intron	30.0%
	GTATGATACACACATTCAAT+AGG	+	chr3_1:14639806-14639825	None:intergenic	30.0%
	TGTCACAAAACTTACTAAAG+AGG	+	chr3_1:14639895-14639914	None:intergenic	30.0%
	TCAAAGTGGATACTAACTAT+AGG	-	chr3_1:14639929-14639948	Msa0350080:intron	30.0%
	TGTTGTTACATGAGAATGTT+GGG	-	chr3_1:14640100-14640119	Msa0350080:CDS	30.0%
	ATTCTAACACCACTGATCAT+AGG	-	chr3_1:14635406-14635425	Msa0350080:CDS	35.0%
	GATTGCTGAGTTCAATAACA+AGG	+	chr3_1:14635449-14635468	None:intergenic	35.0%
	TGTTATTGAACTCAGCAATC+CGG	-	chr3_1:14635449-14635468	Msa0350080:intron	35.0%
!!!	AGAGCATTTTCTCTAAGATC+CGG	+	chr3_1:14635471-14635490	None:intergenic	35.0%
!	AAAGGGTTTAATGTTGGTAG+AGG	+	chr3_1:14635633-14635652	None:intergenic	35.0%
	CTAGCAAAAGGGTTTAATGT+TGG	+	chr3_1:14635639-14635658	None:intergenic	35.0%
	TGTTTACGCTTCACTTCTTA+GGG	-	chr3_1:14635733-14635752	Msa0350080:intron	35.0%
	GGAAATGAGACCTGATAATT+TGG	-	chr3_1:14635755-14635774	Msa0350080:intron	35.0%
	CAGACAAACTCCAAATTATC+AGG	+	chr3_1:14635768-14635787	None:intergenic	35.0%
!	CTGATAATTTGGAGTTTGTC+TGG	-	chr3_1:14635766-14635785	Msa0350080:intron	35.0%
!	TAATTTGGAGTTTGTCTGGT+AGG	-	chr3_1:14635770-14635789	Msa0350080:intron	35.0%
	TCTGGTAGGTCAATAAAATC+TGG	-	chr3_1:14635784-14635803	Msa0350080:intron	35.0%
	AGAACCTAGGTTCAATTTCT+GGG	+	chr3_1:14635825-14635844	None:intergenic	35.0%
!	CAAATTATTCTGGAGAACCT+AGG	+	chr3_1:14635838-14635857	None:intergenic	35.0%
	CCACCAAAGACAAATTATTC+TGG	+	chr3_1:14635848-14635867	None:intergenic	35.0%
!	CCAGAATAATTTGTCTTTGG+TGG	-	chr3_1:14635845-14635864	Msa0350080:CDS	35.0%
	GTTCACTGTTTAGTGTATCA+TGG	-	chr3_1:14635911-14635930	Msa0350080:intron	35.0%
	AAAACTTGGTATTCGGTCAT+AGG	-	chr3_1:14636042-14636061	Msa0350080:CDS	35.0%
	GACGACATCTAATCCATTTA+TGG	-	chr3_1:14636210-14636229	Msa0350080:intron	35.0%
	AATCAAGATTACTATCGCAC+AGG	-	chr3_1:14636236-14636255	Msa0350080:intron	35.0%
	ACCAAGTTATTTGAGGAACT+TGG	-	chr3_1:14636532-14636551	Msa0350080:intron	35.0%
	TCCAAGTTCCTCAAATAACT+TGG	+	chr3_1:14636536-14636555	None:intergenic	35.0%
	AGGAACTTGGACCTTTATTA+TGG	-	chr3_1:14636545-14636564	Msa0350080:intron	35.0%
	TTGTGCATGTATCTTACTTG+TGG	-	chr3_1:14636744-14636763	Msa0350080:intron	35.0%
	GATGAAACACACAATGGTAT+TGG	-	chr3_1:14636791-14636810	Msa0350080:intron	35.0%
	GAAGGATTGTAATACGACAA+AGG	+	chr3_1:14636836-14636855	None:intergenic	35.0%
	TGGAGAAAGATATACATGGT+AGG	+	chr3_1:14636912-14636931	None:intergenic	35.0%
	TTTCAAGAGATGTTAGCTCA+AGG	-	chr3_1:14637025-14637044	Msa0350080:intron	35.0%
	GATTTGAACTTCTTTCCTAG+AGG	+	chr3_1:14637099-14637118	None:intergenic	35.0%
!!	GGTCATTTTACAGTTGTTTG+AGG	+	chr3_1:14637123-14637142	None:intergenic	35.0%
	ATTCATAAGAGTCGCACTAA+TGG	+	chr3_1:14637144-14637163	None:intergenic	35.0%
	GAAATGAGATCCTTGTATCA+GGG	+	chr3_1:14637554-14637573	None:intergenic	35.0%
	AGAAATGAGATCCTTGTATC+AGG	+	chr3_1:14637555-14637574	None:intergenic	35.0%
	ACAAGGATCTCATTTCTCAA+TGG	-	chr3_1:14637558-14637577	Msa0350080:intron	35.0%
!!	CAACTTGTTACATACAACCT+TGG	+	chr3_1:14637633-14637652	None:intergenic	35.0%
	AAGTTATTGCAACCAAAAGC+TGG	+	chr3_1:14637822-14637841	None:intergenic	35.0%
!!	TTTTGGTTGCAATAACTTGC+AGG	-	chr3_1:14637824-14637843	Msa0350080:intron	35.0%
	GCAGGCCATTATGTTAAAAA+TGG	-	chr3_1:14637842-14637861	Msa0350080:intron	35.0%
	CAAAACGAGGCATATTTACA+GGG	+	chr3_1:14638092-14638111	None:intergenic	35.0%
	ACAAAACGAGGCATATTTAC+AGG	+	chr3_1:14638093-14638112	None:intergenic	35.0%
!!!	AATATGCCTCGTTTTGGTTT+TGG	-	chr3_1:14638155-14638174	Msa0350080:CDS	35.0%
	GTGCAAATCATCACAAAAGT+GGG	+	chr3_1:14638189-14638208	None:intergenic	35.0%
	TGTGCAAATCATCACAAAAG+TGG	+	chr3_1:14638190-14638209	None:intergenic	35.0%
	CAAAACGAGACATATTTGCA+GGG	-	chr3_1:14638358-14638377	Msa0350080:intron	35.0%
	AGGACAGTTATAAGGAATGT+TGG	+	chr3_1:14638699-14638718	None:intergenic	35.0%
!	ACTTACAAACCCAACTTGTT+AGG	-	chr3_1:14638930-14638949	Msa0350080:CDS	35.0%
	TTAGTTCATCTACATCACGA+AGG	-	chr3_1:14638954-14638973	Msa0350080:intron	35.0%
	TAGTTCATCTACATCACGAA+GGG	-	chr3_1:14638955-14638974	Msa0350080:intron	35.0%
	GTTAACACCAAAGAAGTCAT+AGG	-	chr3_1:14639100-14639119	Msa0350080:intron	35.0%
!!	GCAGGTATTGGTAACAAAAA+TGG	+	chr3_1:14639256-14639275	None:intergenic	35.0%
	CAACTTTCATTAGCAGGTAT+TGG	+	chr3_1:14639268-14639287	None:intergenic	35.0%
	TGAAAGTTGTATATCTCCAC+AGG	-	chr3_1:14639279-14639298	Msa0350080:intron	35.0%
!!!	TCGAGTTTTGAACATGATGT+TGG	-	chr3_1:14639390-14639409	Msa0350080:intron	35.0%
	CTTATCTCAAAATTGCAGGT+TGG	-	chr3_1:14639474-14639493	Msa0350080:intron	35.0%
	AGGATGATCCAAAAACTATG+AGG	-	chr3_1:14640070-14640089	Msa0350080:CDS	35.0%
	TGATCCAAAAACTATGAGGT+TGG	-	chr3_1:14640074-14640093	Msa0350080:CDS	35.0%
!	AGTACCAACCTCATAGTTTT+TGG	+	chr3_1:14640081-14640100	None:intergenic	35.0%
	CTGTTGTTACATGAGAATGT+TGG	-	chr3_1:14640099-14640118	Msa0350080:CDS	35.0%
	GTTGTTACATGAGAATGTTG+GGG	-	chr3_1:14640101-14640120	Msa0350080:CDS	35.0%
	TTCTTTGTTGAGAGCGATTG+AGG	+	chr3_1:14635357-14635376	None:intergenic	40.0%
!	GCATCGTTTATAGCTTTTCC+TGG	-	chr3_1:14635381-14635400	Msa0350080:CDS	40.0%
	TAACACCACTGATCATAGGA+TGG	-	chr3_1:14635410-14635429	Msa0350080:intron	40.0%
	GTGTTTACGCTTCACTTCTT+AGG	-	chr3_1:14635732-14635751	Msa0350080:intron	40.0%
	GTTTACGCTTCACTTCTTAG+GGG	-	chr3_1:14635734-14635753	Msa0350080:intron	40.0%
	GAGAACCTAGGTTCAATTTC+TGG	+	chr3_1:14635826-14635845	None:intergenic	40.0%
!	ACGAAACAATTAGGCTCTAG+TGG	+	chr3_1:14635881-14635900	None:intergenic	40.0%
	ATCACACTATCAAATGTCGG+TGG	+	chr3_1:14636147-14636166	None:intergenic	40.0%
!	TCAGAGCACCAAGTTATTTG+AGG	-	chr3_1:14636525-14636544	Msa0350080:intron	40.0%
	TAAGTCTCCCTCGTAAAAGT+TGG	+	chr3_1:14636954-14636973	None:intergenic	40.0%
	CAATGTTCTTGCACTACTTC+AGG	-	chr3_1:14637322-14637341	Msa0350080:intron	40.0%
!	GATTCTCTATGACCAGCTTT+TGG	-	chr3_1:14637807-14637826	Msa0350080:intron	40.0%
!	AATTTGAGGGTTGCTAGTCT+TGG	-	chr3_1:14637996-14638015	Msa0350080:intron	40.0%
	ACTGGGACTAAAACAAAACG+AGG	+	chr3_1:14638105-14638124	None:intergenic	40.0%
	CAAAACGAGGCATATTTGCA+GGG	+	chr3_1:14638151-14638170	None:intergenic	40.0%
!	CCTGCAAATATGTCTCGTTT+TGG	+	chr3_1:14638360-14638379	None:intergenic	40.0%
	CCAAAACGAGACATATTTGC+AGG	-	chr3_1:14638357-14638376	Msa0350080:intron	40.0%
	ATCAAAAGCCTCAACAAACG+AGG	+	chr3_1:14639439-14639458	None:intergenic	40.0%
	CTCGCTTATCTCAAAATTGC+AGG	-	chr3_1:14639470-14639489	Msa0350080:intron	40.0%
	TACAAGACATGCTATTAGGG+TGG	-	chr3_1:14639765-14639784	Msa0350080:intron	40.0%
!	ATGCTATTAGGGTGGCTTTT+AGG	-	chr3_1:14639773-14639792	Msa0350080:intron	40.0%
!	TACCTGCTTCTAAAGGAACT+CGG	+	chr3_1:14640131-14640150	None:intergenic	40.0%
!	TCAGTGGTGTTAGAATCACC+AGG	+	chr3_1:14635402-14635421	None:intergenic	45.0%
	GTAAGCCATCCTATGATCAG+TGG	+	chr3_1:14635418-14635437	None:intergenic	45.0%
	TCCACCCAGAAATTGAACCT+AGG	-	chr3_1:14635818-14635837	Msa0350080:intron	45.0%
!	ACCTAGGTTCAATTTCTGGG+TGG	+	chr3_1:14635822-14635841	None:intergenic	45.0%
	TTGGTATTCGGTCATAGGAC+CGG	-	chr3_1:14636047-14636066	Msa0350080:CDS	45.0%
!!	AGATTCGGTGGTGAAAGAGT+AGG	+	chr3_1:14637275-14637294	None:intergenic	45.0%
	GATTGTGAGGGAGAGAGATT+CGG	+	chr3_1:14637290-14637309	None:intergenic	45.0%
!!	CACACTCGAGTTGATTGTGA+GGG	+	chr3_1:14637302-14637321	None:intergenic	45.0%
!!	GTTGCTAGTCTTGGAGTCAT+TGG	-	chr3_1:14638005-14638024	Msa0350080:intron	45.0%
	CCAAAACGAGGCATATTTGC+AGG	+	chr3_1:14638152-14638171	None:intergenic	45.0%
!	CCTGCAAATATGCCTCGTTT+TGG	-	chr3_1:14638149-14638168	Msa0350080:intron	45.0%
	CAAGGACCAAAACCAAAACG+AGG	+	chr3_1:14638164-14638183	None:intergenic	45.0%
!!!	CTCGTTTTGGTTTTGGTCCT+TGG	-	chr3_1:14638162-14638181	Msa0350080:CDS	45.0%
	TCATCACAAAAGTGGGACCA+AGG	+	chr3_1:14638182-14638201	None:intergenic	45.0%
	TTGGCATCTTTGAGCCTGTT+TGG	+	chr3_1:14639615-14639634	None:intergenic	45.0%
!	AACCGAGTTCCTTTAGAAGC+AGG	-	chr3_1:14640126-14640145	Msa0350080:CDS	45.0%
!	GTTCCTTTAGAAGCAGGTAG+AGG	-	chr3_1:14640132-14640151	Msa0350080:CDS	45.0%
	CATCCTCTACCTGCTTCTAA+AGG	+	chr3_1:14640138-14640157	None:intergenic	45.0%
	TGCTCTCTATGTGCTCTCCA+AGG	-	chr3_1:14635485-14635504	Msa0350080:intron	50.0%
!!	GCACACTCGAGTTGATTGTG+AGG	+	chr3_1:14637303-14637322	None:intergenic	50.0%
	TGGCATCTCACCCTGATACA+AGG	-	chr3_1:14637541-14637560	Msa0350080:intron	50.0%
!!	GCTAGTCTTGGAGTCATTGG+TGG	-	chr3_1:14638008-14638027	Msa0350080:intron	50.0%
!	AGTCATTGGTGGCTCGATGA+AGG	-	chr3_1:14638019-14638038	Msa0350080:intron	50.0%
	AGCCTCAACAAACGAGGTGA+GGG	+	chr3_1:14639433-14639452	None:intergenic	50.0%
	AAGCCTCAACAAACGAGGTG+AGG	+	chr3_1:14639434-14639453	None:intergenic	50.0%
	TGTGAGGGAGAGAGATTCGG+TGG	+	chr3_1:14637287-14637306	None:intergenic	55.0%
	CTCAACAAACGAGGTGAGGG+TGG	+	chr3_1:14639430-14639449	None:intergenic	55.0%
!	CACCCTCACCTCGTTTGTTG+AGG	-	chr3_1:14639428-14639447	Msa0350080:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	14635339	14640158	14635339	ID=Msa0350080;Name=Msa0350080
chr3_1	mRNA	14635339	14640158	14635339	ID=Msa0350080-mRNA-1;Parent=Msa0350080;Name=Msa0350080-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|0\|0\|0.87\|0.85\|0.87\|8\|0\|273
chr3_1	exon	14639991	14640158	14639991	ID=Msa0350080-mRNA-1:exon:3643;Parent=Msa0350080-mRNA-1
chr3_1	exon	14638897	14638968	14638897	ID=Msa0350080-mRNA-1:exon:3642;Parent=Msa0350080-mRNA-1
chr3_1	exon	14638154	14638243	14638154	ID=Msa0350080-mRNA-1:exon:3641;Parent=Msa0350080-mRNA-1
chr3_1	exon	14637913	14637960	14637913	ID=Msa0350080-mRNA-1:exon:3640;Parent=Msa0350080-mRNA-1
chr3_1	exon	14636302	14636397	14636302	ID=Msa0350080-mRNA-1:exon:3639;Parent=Msa0350080-mRNA-1
chr3_1	exon	14636006	14636196	14636006	ID=Msa0350080-mRNA-1:exon:3638;Parent=Msa0350080-mRNA-1
chr3_1	exon	14635844	14635913	14635844	ID=Msa0350080-mRNA-1:exon:3637;Parent=Msa0350080-mRNA-1
chr3_1	exon	14635339	14635425	14635339	ID=Msa0350080-mRNA-1:exon:3636;Parent=Msa0350080-mRNA-1
chr3_1	CDS	14639991	14640158	14639991	ID=Msa0350080-mRNA-1:cds;Parent=Msa0350080-mRNA-1
chr3_1	CDS	14638897	14638968	14638897	ID=Msa0350080-mRNA-1:cds;Parent=Msa0350080-mRNA-1
chr3_1	CDS	14638154	14638243	14638154	ID=Msa0350080-mRNA-1:cds;Parent=Msa0350080-mRNA-1
chr3_1	CDS	14637913	14637960	14637913	ID=Msa0350080-mRNA-1:cds;Parent=Msa0350080-mRNA-1
chr3_1	CDS	14636302	14636397	14636302	ID=Msa0350080-mRNA-1:cds;Parent=Msa0350080-mRNA-1
chr3_1	CDS	14636006	14636196	14636006	ID=Msa0350080-mRNA-1:cds;Parent=Msa0350080-mRNA-1
chr3_1	CDS	14635844	14635913	14635844	ID=Msa0350080-mRNA-1:cds;Parent=Msa0350080-mRNA-1
chr3_1	CDS	14635339	14635425	14635339	ID=Msa0350080-mRNA-1:cds;Parent=Msa0350080-mRNA-1

Gene Sequence

>Msa0350080

ATGGCACACTTTACTCCTCAATCGCTCTCAACAAAGAACAATGCATCGTTTATAGCTTTTCCTGGTGATTCTAACACCACTGATCATAGGATGGCTTACATGCAAAGCCTTGTTATTGAACTCAGCAATCCGGATCTTAGAGAAAATGCTCTCTATGTGCTCTCCAAGAGCACCAAGTTATTTGAGGAACTTGGACCTTTATTATGGAATACTGTTGGTACTATTGCAGTATTTTTACAGGAAATACTTTCAATATATCCTACTCTTTCACCACCGAATCTCTCTCCCTCACAATCAACTCGAGTGTGCAATGTTCTTGCACTACTTCAGTGTGTGGCATCTCACCCTGATACAAGGATCTCATTTCTCAATGGTAATGTTAACACCAAAGAAGTCATAGGTTTCTATCTCTCAAGTGAGATAATTTCACTATGTTTGTCTAATATGCAAAACGGCAATGAATTGACAAAAAATGTTGCAACATTTATAATTCTGAAAATTATATTAGACGATGATGGTTTGGCTCGTGTTTGTGCTACAACAGAGAATTTTTTTGGAGTATGTCGAGTTTTGAACATGATGTTGGAAGATCTTGAGAATCCACCCTCACCTCGTTTGTTGAGGCTTTTGATTTCATGTTATTCTCGCTTATCTCAAAATTGCAGGGCTAGAGTTGCATTAACAACTTATCTTCCAAACAGGCTCAAAGATGCCAATCTCATCAATTTTTTTCGTGATGATCCAAAAACTATGAGGTTGGTACTGTTGTTACATGAGAATGTTGGGGTGAACCGAGTTCCTTTAGAAGCAGGTAGAGGATGA

Protein sequence

>Msa0350080

MAHFTPQSLSTKNNASFIAFPGDSNTTDHRMAYMQSLVIELSNPDLRENALYVLSKSTKLFEELGPLLWNTVGTIAVFLQEILSIYPTLSPPNLSPSQSTRVCNVLALLQCVASHPDTRISFLNGNVNTKEVIGFYLSSEIISLCLSNMQNGNELTKNVATFIILKIILDDDGLARVCATTENFFGVCRVLNMMLEDLENPPSPRLLRLLISCYSRLSQNCRARVALTTYLPNRLKDANLINFFRDDPKTMRLVLLLHENVGVNRVPLEAGRG*