Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351310 | XP_013459055.1 | 93.915 | 378 | 19 | 1 | 11 | 384 | 16 | 393 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351310 | sp|Q8AVN9|ZN346_XENLA | 23.954 | 263 | 143 | 7 | 110 | 372 | 219 | 424 | 3.00e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351310 | A0A072UVJ5 | 93.915 | 378 | 19 | 1 | 11 | 384 | 16 | 393 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0351310 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351310 | MtrunA17_Chr3g0086321 | 93.915 | 378 | 19 | 1 | 11 | 384 | 16 | 393 | 0.0 | 717 |
| Msa0351310 | MtrunA17_Chr5g0447971 | 69.432 | 229 | 70 | 0 | 156 | 384 | 304 | 532 | 1.13e-103 | 316 |
| Msa0351310 | MtrunA17_Chr5g0447971 | 68.276 | 145 | 37 | 1 | 46 | 190 | 53 | 188 | 3.33e-55 | 189 |
| Msa0351310 | MtrunA17_Chr5g0447971 | 32.035 | 231 | 113 | 9 | 156 | 378 | 240 | 434 | 5.60e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351310 | AT5G61190.1 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 7.60e-22 | 98.2 |
| Msa0351310 | AT5G61190.1 | 25.118 | 211 | 118 | 6 | 112 | 284 | 289 | 497 | 2.01e-13 | 72.4 |
| Msa0351310 | AT5G61190.1 | 25.442 | 283 | 155 | 10 | 119 | 374 | 242 | 495 | 2.49e-13 | 72.0 |
| Msa0351310 | AT5G61190.10 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 7.71e-22 | 98.2 |
| Msa0351310 | AT5G61190.10 | 24.648 | 284 | 164 | 9 | 119 | 374 | 242 | 503 | 1.12e-12 | 70.1 |
| Msa0351310 | AT5G61190.10 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.86e-12 | 69.3 |
| Msa0351310 | AT5G61190.7 | 30.412 | 194 | 104 | 4 | 189 | 382 | 146 | 308 | 8.29e-22 | 98.2 |
| Msa0351310 | AT5G61190.7 | 24.825 | 286 | 161 | 10 | 119 | 374 | 148 | 409 | 1.36e-12 | 69.7 |
| Msa0351310 | AT5G61190.7 | 24.201 | 219 | 118 | 6 | 112 | 284 | 195 | 411 | 2.41e-12 | 68.9 |
| Msa0351310 | AT5G61190.3 | 30.412 | 194 | 104 | 4 | 189 | 382 | 146 | 308 | 8.29e-22 | 98.2 |
| Msa0351310 | AT5G61190.3 | 24.825 | 286 | 161 | 10 | 119 | 374 | 148 | 409 | 1.36e-12 | 69.7 |
| Msa0351310 | AT5G61190.3 | 24.201 | 219 | 118 | 6 | 112 | 284 | 195 | 411 | 2.41e-12 | 68.9 |
| Msa0351310 | AT5G61190.5 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.01e-21 | 97.8 |
| Msa0351310 | AT5G61190.5 | 24.648 | 284 | 164 | 9 | 119 | 374 | 242 | 503 | 1.28e-12 | 70.1 |
| Msa0351310 | AT5G61190.5 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.33e-12 | 69.3 |
| Msa0351310 | AT5G61190.9 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.02e-21 | 97.8 |
| Msa0351310 | AT5G61190.9 | 23.132 | 281 | 172 | 7 | 119 | 374 | 242 | 503 | 1.27e-12 | 70.1 |
| Msa0351310 | AT5G61190.9 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.18e-12 | 69.3 |
| Msa0351310 | AT5G61190.6 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.07e-21 | 97.8 |
| Msa0351310 | AT5G61190.6 | 24.648 | 284 | 164 | 9 | 119 | 374 | 242 | 503 | 1.30e-12 | 70.1 |
| Msa0351310 | AT5G61190.6 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.19e-12 | 69.3 |
| Msa0351310 | AT5G61190.11 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.10e-21 | 97.8 |
| Msa0351310 | AT5G61190.11 | 24.648 | 284 | 164 | 9 | 119 | 374 | 242 | 503 | 1.23e-12 | 70.1 |
| Msa0351310 | AT5G61190.11 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.43e-12 | 68.9 |
| Msa0351310 | AT5G61190.8 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.69e-21 | 97.1 |
| Msa0351310 | AT5G61190.8 | 23.132 | 281 | 172 | 7 | 119 | 374 | 242 | 503 | 1.11e-12 | 70.1 |
| Msa0351310 | AT5G61190.8 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.50e-12 | 68.9 |
| Msa0351310 | AT5G61190.4 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.77e-21 | 97.1 |
| Msa0351310 | AT5G61190.4 | 23.132 | 281 | 172 | 7 | 119 | 374 | 242 | 503 | 9.57e-13 | 70.1 |
| Msa0351310 | AT5G61190.4 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.44e-12 | 68.9 |
| Msa0351310 | AT5G61190.2 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.77e-21 | 97.1 |
| Msa0351310 | AT5G61190.2 | 23.132 | 281 | 172 | 7 | 119 | 374 | 242 | 503 | 9.57e-13 | 70.1 |
| Msa0351310 | AT5G61190.2 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 2.44e-12 | 68.9 |
Find 108 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATGCCTTCTTTGGTTT+TGG | 0.255884 | 3_1:+17887911 | None:intergenic |
| ATCAGGGAATGATGAATAAT+AGG | 0.259476 | 3_1:+17892299 | None:intergenic |
| ACATGGCCACCACAAATTTA+TGG | 0.268191 | 3_1:-17890271 | Msa0351310:CDS |
| ACTTATTACTGTTTGTGTTT+TGG | 0.270098 | 3_1:-17887562 | Msa0351310:three_prime_UTR |
| TCAAGTTCTGATGCCTTCTT+TGG | 0.279559 | 3_1:+17887905 | None:intergenic |
| TCCGCAACAAATACTTTAAT+CGG | 0.307128 | 3_1:-17887962 | Msa0351310:CDS |
| CGCTTGAATTCGGCAATAGA+TGG | 0.316684 | 3_1:+17888181 | None:intergenic |
| TTGTTGTTGAGGGTACATTT+TGG | 0.325588 | 3_1:+17892365 | None:intergenic |
| GTTCCTGTAACACAAGTAAA+AGG | 0.331034 | 3_1:+17887583 | None:intergenic |
| GCAGAATCAACCTGTTTCTT+AGG | 0.337690 | 3_1:+17890007 | None:intergenic |
| ACAAATTGGGTATGAATTCA+TGG | 0.338843 | 3_1:+17892513 | None:intergenic |
| TGGGAGGTGTAAAGAGAAAC+AGG | 0.338861 | 3_1:+17892219 | None:intergenic |
| GTTCTTCAAGTGTTTCTTAC+CGG | 0.356623 | 3_1:+17888042 | None:intergenic |
| TTTAATTGCTAAGTGGTAGA+TGG | 0.360146 | 3_1:-17887489 | Msa0351310:three_prime_UTR |
| AACACCGTTACGCTTGAATT+CGG | 0.361255 | 3_1:+17888171 | None:intergenic |
| ATACAAGGACAAGGGTTAAT+TGG | 0.382675 | 3_1:-17890052 | Msa0351310:CDS |
| CACGCAGAAGGTAAACTTGC+AGG | 0.393751 | 3_1:+17890301 | None:intergenic |
| ATGCAGTTTGTCATTGCTAA+TGG | 0.394861 | 3_1:-17887642 | Msa0351310:three_prime_UTR |
| AACCAACAGATTATCACAAT+TGG | 0.400223 | 3_1:-17892197 | Msa0351310:CDS |
| GGAGGATGAAGTGAAGGATC+AGG | 0.403946 | 3_1:+17892282 | None:intergenic |
| GCAATCCGAGCCTAAGAAAC+AGG | 0.404268 | 3_1:-17890017 | Msa0351310:CDS |
| GCATATATCAAACATCTTGC+TGG | 0.416947 | 3_1:-17889941 | Msa0351310:CDS |
| CACTTCACATCTCAAAGCTT+TGG | 0.420423 | 3_1:+17890207 | None:intergenic |
| GAAGGAGGAGCTGCAGTTGA+TGG | 0.421675 | 3_1:-17887854 | Msa0351310:CDS |
| TGTAAACTTGTGAATCAAAA+GGG | 0.422622 | 3_1:+17892437 | None:intergenic |
| TAAAGTATTTGTTGCGGAGG+CGG | 0.426114 | 3_1:+17887967 | None:intergenic |
| AAGCTTTGGTGACATTGGTT+TGG | 0.436170 | 3_1:+17890221 | None:intergenic |
| GCAAGATTAATTGTAACAGC+AGG | 0.443520 | 3_1:-17888087 | Msa0351310:CDS |
| AAGAAACGTAAAGTTGTAGA+AGG | 0.448799 | 3_1:-17887872 | Msa0351310:CDS |
| TGTTGCGGAGGCGGTGGAAG+TGG | 0.452068 | 3_1:+17887976 | None:intergenic |
| GTTGCCTTGATGTCTAATAA+TGG | 0.452518 | 3_1:-17888211 | Msa0351310:CDS |
| TGTTGTTGCTGGAAATTGTA+AGG | 0.454821 | 3_1:+17892330 | None:intergenic |
| TCAGGGAATGATGAATAATA+GGG | 0.455305 | 3_1:+17892300 | None:intergenic |
| GTGTAAACTTGTGAATCAAA+AGG | 0.458504 | 3_1:+17892436 | None:intergenic |
| TGGGAGAAAGCATGCTGCTC+AGG | 0.459949 | 3_1:-17889921 | Msa0351310:intron |
| TCTCATCTAGACTTGAAGAC+AGG | 0.469108 | 3_1:-17887676 | Msa0351310:three_prime_UTR |
| AGCTGATCGGTCACTGGTTG+AGG | 0.470018 | 3_1:-17887714 | Msa0351310:three_prime_UTR |
| ATCAACCTGTTTCTTAGGCT+CGG | 0.472485 | 3_1:+17890012 | None:intergenic |
| GGTGAAAATTGAAAACTGTC+TGG | 0.474169 | 3_1:+17887792 | None:intergenic |
| CAAATTGGGTATGAATTCAT+GGG | 0.476095 | 3_1:+17892514 | None:intergenic |
| GTCTCGTTGCCATAAATTTG+TGG | 0.477870 | 3_1:+17890262 | None:intergenic |
| CTTCTAATATTGCAGGCTGT+TGG | 0.480500 | 3_1:-17890349 | Msa0351310:intron |
| GAGCTTGGTATTGTTGTTGA+GGG | 0.489208 | 3_1:+17892355 | None:intergenic |
| GGCTCGGATTGCTTGACTAC+GGG | 0.489539 | 3_1:+17890028 | None:intergenic |
| TTTGCAAGTGGGTCAGTGCC+AGG | 0.495030 | 3_1:+17892261 | None:intergenic |
| AGTATTTGTTGCGGAGGCGG+TGG | 0.496733 | 3_1:+17887970 | None:intergenic |
| CATATATCAAACATCTTGCT+GGG | 0.508931 | 3_1:-17889940 | Msa0351310:CDS |
| TGGTTGAGCTGATCGGTCAC+TGG | 0.510188 | 3_1:-17887720 | Msa0351310:exon |
| AGGCTCGGATTGCTTGACTA+CGG | 0.513657 | 3_1:+17890027 | None:intergenic |
| TGAGCTTGGTATTGTTGTTG+AGG | 0.516461 | 3_1:+17892354 | None:intergenic |
| TCTCAAAGCTTTGGTGACAT+TGG | 0.516531 | 3_1:+17890216 | None:intergenic |
| TATCTGATGGGTTCAGATTG+AGG | 0.517150 | 3_1:+17892168 | None:intergenic |
| TTGCAAACCTCAATGCATCA+TGG | 0.519312 | 3_1:+17887518 | None:intergenic |
| TCTTATGAAAGTCACATAGC+TGG | 0.520481 | 3_1:-17890157 | Msa0351310:CDS |
| GAATTCAAGCGTAACGGTGT+TGG | 0.521387 | 3_1:-17888169 | Msa0351310:CDS |
| GATCCTTCACTTCATCCTCC+TGG | 0.522615 | 3_1:-17892279 | Msa0351310:CDS |
| ACATGCTGCTATGGTGAAGA+AGG | 0.523999 | 3_1:-17887756 | Msa0351310:CDS |
| AATTGTGATAATCTGTTGGT+TGG | 0.524110 | 3_1:+17892199 | None:intergenic |
| TTCGCATGAGATGTAATAGT+AGG | 0.525742 | 3_1:+17890097 | None:intergenic |
| CGATCAACCAAAACCAAAGA+AGG | 0.528394 | 3_1:-17887918 | Msa0351310:CDS |
| AATGCCATTATTAGACATCA+AGG | 0.532248 | 3_1:+17888207 | None:intergenic |
| CTCATCTAGACTTGAAGACA+GGG | 0.533305 | 3_1:-17887675 | Msa0351310:three_prime_UTR |
| CTTCTGCGTGGAATGGTACA+TGG | 0.535273 | 3_1:-17890288 | Msa0351310:CDS |
| GCTTGAATTCGGCAATAGAT+GGG | 0.537412 | 3_1:+17888182 | None:intergenic |
| ATTGTGATAATCTGTTGGTT+GGG | 0.539629 | 3_1:+17892200 | None:intergenic |
| CGGTCACTGGTTGAGCTGAT+CGG | 0.541750 | 3_1:-17887727 | Msa0351310:exon |
| CCGCAACAAATACTTTAATC+GGG | 0.543509 | 3_1:-17887961 | Msa0351310:CDS |
| AAGAAGGCAGGATCGGTCAC+TGG | 0.543881 | 3_1:-17887740 | Msa0351310:CDS |
| ACTTACAAGATCATATCTGA+TGG | 0.547707 | 3_1:+17892155 | None:intergenic |
| TAAGAAACACTTGAAGAACT+TGG | 0.549430 | 3_1:-17888038 | Msa0351310:CDS |
| TTGGTGACATTGGTTTGGTT+AGG | 0.549676 | 3_1:+17890226 | None:intergenic |
| AGTTTACCTTCTGCGTGGAA+TGG | 0.550393 | 3_1:-17890295 | Msa0351310:CDS |
| CAAGATTAATTGTAACAGCA+GGG | 0.550872 | 3_1:-17888086 | Msa0351310:CDS |
| AAAAGCTGCCAAGAAAATCA+AGG | 0.552640 | 3_1:-17888137 | Msa0351310:CDS |
| GTAAACTTGTGAATCAAAAG+GGG | 0.555334 | 3_1:+17892438 | None:intergenic |
| AAATGAGTTTAATTGCTAAG+TGG | 0.555864 | 3_1:-17887496 | Msa0351310:three_prime_UTR |
| GCTGCTATGGTGAAGAAGGC+AGG | 0.561695 | 3_1:-17887752 | Msa0351310:CDS |
| CCCGATTAAAGTATTTGTTG+CGG | 0.564165 | 3_1:+17887961 | None:intergenic |
| TTGATGTCTAATAATGGCAT+TGG | 0.569058 | 3_1:-17888205 | Msa0351310:CDS |
| GTGATAATCTGTTGGTTGGG+AGG | 0.571099 | 3_1:+17892203 | None:intergenic |
| ATATACATTACACACTTAGC+CGG | 0.575976 | 3_1:-17888061 | Msa0351310:CDS |
| ATAACTTCCATGATGCATTG+AGG | 0.576340 | 3_1:-17887525 | Msa0351310:three_prime_UTR |
| GAAACAGGTTGATTCTGCAA+CGG | 0.579888 | 3_1:-17890002 | Msa0351310:CDS |
| ATCCAATTGTGATAATCTGT+TGG | 0.584557 | 3_1:+17892195 | None:intergenic |
| TCAAGGTTGCTCAGTCTGCA+TGG | 0.588753 | 3_1:-17888120 | Msa0351310:CDS |
| GGAAATTGTAAGGTTGAGCT+TGG | 0.592936 | 3_1:+17892340 | None:intergenic |
| GTGCCAGGAGGATGAAGTGA+AGG | 0.595047 | 3_1:+17892276 | None:intergenic |
| ACTGACACAAGTAGTATACA+AGG | 0.597057 | 3_1:-17890067 | Msa0351310:CDS |
| TGGTCAGAAACATGCTGCTA+TGG | 0.598112 | 3_1:-17887765 | Msa0351310:CDS |
| ATCGGGCCACAAGAAAAGCC+AGG | 0.598973 | 3_1:-17887944 | Msa0351310:CDS |
| CATGTACCATTCCACGCAGA+AGG | 0.601401 | 3_1:+17890289 | None:intergenic |
| GAGGATGAAGTGAAGGATCA+GGG | 0.602017 | 3_1:+17892283 | None:intergenic |
| AAACGTAAAGTTGTAGAAGG+AGG | 0.609951 | 3_1:-17887869 | Msa0351310:CDS |
| TATGGTGAAGAAGGCAGGAT+CGG | 0.613734 | 3_1:-17887747 | Msa0351310:CDS |
| CTTACAAGATCATATCTGAT+GGG | 0.617080 | 3_1:+17892156 | None:intergenic |
| AAAGATGTTGAATTTGCAAG+TGG | 0.619628 | 3_1:+17892249 | None:intergenic |
| GATTAAAGTATTTGTTGCGG+AGG | 0.640719 | 3_1:+17887964 | None:intergenic |
| CAGCATGTTTCTGACCAACA+AGG | 0.643975 | 3_1:+17887771 | None:intergenic |
| TCGTTGCCATAAATTTGTGG+TGG | 0.644262 | 3_1:+17890265 | None:intergenic |
| AAGATGTTGAATTTGCAAGT+GGG | 0.649561 | 3_1:+17892250 | None:intergenic |
| ACAAGTAGTATACAAGGACA+AGG | 0.651454 | 3_1:-17890061 | Msa0351310:CDS |
| CTGCAAGTTTACCTTCTGCG+TGG | 0.655416 | 3_1:-17890300 | Msa0351310:CDS |
| AATGTGCACTTTATGCAATG+TGG | 0.705637 | 3_1:-17887825 | Msa0351310:CDS |
| ATTGCCGAATTCAAGCGTAA+CGG | 0.711887 | 3_1:-17888175 | Msa0351310:CDS |
| GCAAGTGGGTCAGTGCCAGG+AGG | 0.726366 | 3_1:+17892264 | None:intergenic |
| TAAACTTGTGAATCAAAAGG+GGG | 0.729401 | 3_1:+17892439 | None:intergenic |
| CAAGTAGTATACAAGGACAA+GGG | 0.731447 | 3_1:-17890060 | Msa0351310:CDS |
| GAGGTGTAAAGAGAAACAGG+AGG | 0.817855 | 3_1:+17892222 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACATTTTTTAAAAATG+TGG | - | chr3_1:17889418-17889437 | Msa0351310:intron | 10.0% |
| !! | TTTAATACAAATAATGTCAA+TGG | - | chr3_1:17888711-17888730 | Msa0351310:intron | 15.0% |
| !! | TAATACAAATAATTGTCAAA+TGG | - | chr3_1:17889224-17889243 | Msa0351310:intron | 15.0% |
| !! | TCATATATTGTTAATAGAAT+TGG | - | chr3_1:17889495-17889514 | Msa0351310:intron | 15.0% |
| !! | CATATATTGTTAATAGAATT+GGG | - | chr3_1:17889496-17889515 | Msa0351310:intron | 15.0% |
| !! | AATATTAAAAGGATGAAAAT+TGG | - | chr3_1:17890290-17890309 | Msa0351310:CDS | 15.0% |
| !! | TCCAATTAAGATAAAAATAA+CGG | + | chr3_1:17890356-17890375 | None:intergenic | 15.0% |
| !! | TATAATATCAATTGTTAATC+AGG | - | chr3_1:17890959-17890978 | Msa0351310:intron | 15.0% |
| !! | TGATAAATAAATATCATATG+TGG | - | chr3_1:17891390-17891409 | Msa0351310:intron | 15.0% |
| !!! | ATTAAGTAAAAATAGTCTTT+TGG | - | chr3_1:17891436-17891455 | Msa0351310:intron | 15.0% |
| !!! | TTAAGTAAAAATAGTCTTTT+GGG | - | chr3_1:17891437-17891456 | Msa0351310:intron | 15.0% |
| !!! | TTTTCTTATGTTTTTTCATC+TGG | - | chr3_1:17887917-17887936 | Msa0351310:CDS | 20.0% |
| !!! | TTTCTTATGTTTTTTCATCT+GGG | - | chr3_1:17887918-17887937 | Msa0351310:CDS | 20.0% |
| !! | TTTGAAAACTAAGATCAAAA+GGG | + | chr3_1:17888045-17888064 | None:intergenic | 20.0% |
| !! | ATTTGAAAACTAAGATCAAA+AGG | + | chr3_1:17888046-17888065 | None:intergenic | 20.0% |
| !!! | TTTTCTTATGTTATGTCATT+TGG | - | chr3_1:17888084-17888103 | Msa0351310:CDS | 20.0% |
| !!! | TTTCTTATGTTATGTCATTT+GGG | - | chr3_1:17888085-17888104 | Msa0351310:CDS | 20.0% |
| !!! | TCATAGTTAGAGTTTTAAAA+TGG | - | chr3_1:17888374-17888393 | Msa0351310:intron | 20.0% |
| !!! | TCATAATTAGGGTTTTTAAA+TGG | - | chr3_1:17888469-17888488 | Msa0351310:intron | 20.0% |
| !!! | ATAATCAGGGTTTTTAAAAT+GGG | - | chr3_1:17888521-17888540 | Msa0351310:intron | 20.0% |
| !! | AAAAGTGAGAACAATAAAAT+AGG | - | chr3_1:17889537-17889556 | Msa0351310:intron | 20.0% |
| !! | AAAGTGAGAACAATAAAATA+GGG | - | chr3_1:17889538-17889557 | Msa0351310:intron | 20.0% |
| !! | ATTGTCTACAATATAGAATA+AGG | + | chr3_1:17890174-17890193 | None:intergenic | 20.0% |
| !!! | ACCGTTATTTTTATCTTAAT+TGG | - | chr3_1:17890352-17890371 | Msa0351310:intron | 20.0% |
| !!! | GGTTTTTAAAAGTTGAAAAA+AGG | + | chr3_1:17891045-17891064 | None:intergenic | 20.0% |
| !!! | GAATAAGTTGAATACAATAA+TGG | + | chr3_1:17891190-17891209 | None:intergenic | 20.0% |
| !! | CAAAATAAATAAAGAACAAG+TGG | + | chr3_1:17891267-17891286 | None:intergenic | 20.0% |
| !! | AAAAAATACTTGTTTGTTCA+AGG | + | chr3_1:17891540-17891559 | None:intergenic | 20.0% |
| !! | TTATCTATAGATATACATCA+AGG | + | chr3_1:17891631-17891650 | None:intergenic | 20.0% |
| ! | TGTAAACTTGTGAATCAAAA+GGG | + | chr3_1:17887565-17887584 | None:intergenic | 25.0% |
| ! | TTCGAAAACAATGATCAAAA+GGG | + | chr3_1:17887878-17887897 | None:intergenic | 25.0% |
| ! | ATTCGAAAACAATGATCAAA+AGG | + | chr3_1:17887879-17887898 | None:intergenic | 25.0% |
| !!! | TTCATTTTAACGTAGTTGTT+TGG | - | chr3_1:17888009-17888028 | Msa0351310:CDS | 25.0% |
| !! | TTCTTATGTTATGTCATTTG+GGG | - | chr3_1:17888086-17888105 | Msa0351310:CDS | 25.0% |
| !!! | ATGAAATAGTGGATAAGTTT+TGG | - | chr3_1:17888240-17888259 | Msa0351310:intron | 25.0% |
| ! | TGTTGGAATTCATCTTAATT+AGG | - | chr3_1:17888311-17888330 | Msa0351310:intron | 25.0% |
| ! | GTTGGAATTCATCTTAATTA+GGG | - | chr3_1:17888312-17888331 | Msa0351310:intron | 25.0% |
| !!! | CTTAATTAGGGTTTTTAGAA+TGG | - | chr3_1:17888324-17888343 | Msa0351310:intron | 25.0% |
| !!! | TTTTAGAATGGAAATGATTG+TGG | - | chr3_1:17888336-17888355 | Msa0351310:intron | 25.0% |
| ! | ATTTAGCATTCACAAATGAA+AGG | - | chr3_1:17888427-17888446 | Msa0351310:intron | 25.0% |
| !! | ATAGCGTGATTTTCATAATT+AGG | - | chr3_1:17888457-17888476 | Msa0351310:intron | 25.0% |
| !! | TAGCGTGATTTTCATAATTA+GGG | - | chr3_1:17888458-17888477 | Msa0351310:intron | 25.0% |
| !!! | CATAATCAGGGTTTTTAAAA+TGG | - | chr3_1:17888520-17888539 | Msa0351310:intron | 25.0% |
| ! | AATACAAATAATGTCAATGG+TGG | - | chr3_1:17888714-17888733 | Msa0351310:intron | 25.0% |
| ! | TGGGAAAAAAAAACAAACAA+GGG | - | chr3_1:17888968-17888987 | Msa0351310:intron | 25.0% |
| ! | AAGAAGAAAAAACATACAAG+TGG | + | chr3_1:17889163-17889182 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTCTTTGTTAACG+TGG | - | chr3_1:17889171-17889190 | Msa0351310:intron | 25.0% |
| ! | AAATTCAAAACCCTAACATA+CGG | + | chr3_1:17889588-17889607 | None:intergenic | 25.0% |
| !!! | GTTAGGGTTTTGAATTTTAT+TGG | - | chr3_1:17889591-17889610 | Msa0351310:intron | 25.0% |
| ! | GACAGAACAAGAATATTAAA+AGG | - | chr3_1:17890279-17890298 | Msa0351310:CDS | 25.0% |
| ! | CTACAGAGTTAATTAGTAAA+TGG | + | chr3_1:17890430-17890449 | None:intergenic | 25.0% |
| ! | CATTTACTAATTAACTCTGT+AGG | - | chr3_1:17890428-17890447 | Msa0351310:intron | 25.0% |
| !!! | TTACATGCATTTTAGCTAAA+TGG | + | chr3_1:17890454-17890473 | None:intergenic | 25.0% |
| !! | AACAACAATAGTCTTTTAGT+AGG | - | chr3_1:17890903-17890922 | Msa0351310:intron | 25.0% |
| ! | TGTTTCAAAGAAATGAAGTT+TGG | + | chr3_1:17891354-17891373 | None:intergenic | 25.0% |
| ! | ACAAATAAAATGAGCAACTT+GGG | + | chr3_1:17891690-17891709 | None:intergenic | 25.0% |
| ! | AACAAATAAAATGAGCAACT+TGG | + | chr3_1:17891691-17891710 | None:intergenic | 25.0% |
| !! | ACTTATTACTGTTTGTGTTT+TGG | - | chr3_1:17892437-17892456 | Msa0351310:five_prime_UTR | 25.0% |
| ! | AAATGAGTTTAATTGCTAAG+TGG | - | chr3_1:17892503-17892522 | Msa0351310:five_prime_UTR | 25.0% |
| CAAATTGGGTATGAATTCAT+GGG | + | chr3_1:17887488-17887507 | None:intergenic | 30.0% | |
| ACAAATTGGGTATGAATTCA+TGG | + | chr3_1:17887489-17887508 | None:intergenic | 30.0% | |
| TAAACTTGTGAATCAAAAGG+GGG | + | chr3_1:17887563-17887582 | None:intergenic | 30.0% | |
| GTAAACTTGTGAATCAAAAG+GGG | + | chr3_1:17887564-17887583 | None:intergenic | 30.0% | |
| GTGTAAACTTGTGAATCAAA+AGG | + | chr3_1:17887566-17887585 | None:intergenic | 30.0% | |
| TCAGGGAATGATGAATAATA+GGG | + | chr3_1:17887702-17887721 | None:intergenic | 30.0% | |
| ATCAGGGAATGATGAATAAT+AGG | + | chr3_1:17887703-17887722 | None:intergenic | 30.0% | |
| AAGATGTTGAATTTGCAAGT+GGG | + | chr3_1:17887752-17887771 | None:intergenic | 30.0% | |
| AAAGATGTTGAATTTGCAAG+TGG | + | chr3_1:17887753-17887772 | None:intergenic | 30.0% | |
| ! | ATTGTGATAATCTGTTGGTT+GGG | + | chr3_1:17887802-17887821 | None:intergenic | 30.0% |
| AATTGTGATAATCTGTTGGT+TGG | + | chr3_1:17887803-17887822 | None:intergenic | 30.0% | |
| AACCAACAGATTATCACAAT+TGG | - | chr3_1:17887802-17887821 | Msa0351310:CDS | 30.0% | |
| ATCCAATTGTGATAATCTGT+TGG | + | chr3_1:17887807-17887826 | None:intergenic | 30.0% | |
| CTTACAAGATCATATCTGAT+GGG | + | chr3_1:17887846-17887865 | None:intergenic | 30.0% | |
| ACTTACAAGATCATATCTGA+TGG | + | chr3_1:17887847-17887866 | None:intergenic | 30.0% | |
| !! | TGCATTTTGTTGTAGTTGTT+AGG | - | chr3_1:17888195-17888214 | Msa0351310:CDS | 30.0% |
| GATGTCTAGTTATGAAATAG+TGG | - | chr3_1:17888229-17888248 | Msa0351310:intron | 30.0% | |
| TAATGTGAAGTTCTGTTAAG+TGG | - | chr3_1:17888287-17888306 | Msa0351310:intron | 30.0% | |
| AATGTGAAGTTCTGTTAAGT+GGG | - | chr3_1:17888288-17888307 | Msa0351310:intron | 30.0% | |
| !! | AGAGTATCGTAAAACAATAG+TGG | + | chr3_1:17888690-17888709 | None:intergenic | 30.0% |
| GCTATCTATATTGTCCTATT+CGG | + | chr3_1:17888797-17888816 | None:intergenic | 30.0% | |
| GTGGGAAAAAAAAACAAACA+AGG | - | chr3_1:17888967-17888986 | Msa0351310:intron | 30.0% | |
| GGGAAAAAAAAACAAACAAG+GGG | - | chr3_1:17888969-17888988 | Msa0351310:intron | 30.0% | |
| AAAAACAAACAAGGGGAAAT+CGG | - | chr3_1:17888976-17888995 | Msa0351310:intron | 30.0% | |
| GATATCCATATTGTCCTATT+CGG | + | chr3_1:17889310-17889329 | None:intergenic | 30.0% | |
| ATAGGACAATATGGATATCA+TGG | - | chr3_1:17889311-17889330 | Msa0351310:intron | 30.0% | |
| GAAAGATGAATGATGATAGT+TGG | - | chr3_1:17889440-17889459 | Msa0351310:intron | 30.0% | |
| AATTCAAAACCCTAACATAC+GGG | + | chr3_1:17889587-17889606 | None:intergenic | 30.0% | |
| TTCAATGCTTCTAATATTGC+AGG | - | chr3_1:17889643-17889662 | Msa0351310:intron | 30.0% | |
| CATATATCAAACATCTTGCT+GGG | - | chr3_1:17890059-17890078 | Msa0351310:CDS | 30.0% | |
| GTTGCATGTAATCTTACAAA+AGG | + | chr3_1:17890124-17890143 | None:intergenic | 30.0% | |
| GTTTAGCTAATTAACACTGT+AGG | - | chr3_1:17890404-17890423 | Msa0351310:intron | 30.0% | |
| TAAAATGCATGTAAGATAGC+TGG | - | chr3_1:17890460-17890479 | Msa0351310:intron | 30.0% | |
| GTATGAAAATAAGAGAACCA+TGG | + | chr3_1:17890576-17890595 | None:intergenic | 30.0% | |
| !! | GGAAATAAAAAGTGTTCTTC+TGG | - | chr3_1:17890652-17890671 | Msa0351310:intron | 30.0% |
| AACACAACACTAAACTCATT+TGG | + | chr3_1:17890718-17890737 | None:intergenic | 30.0% | |
| TTTAGTAGGAGTAGATTACA+TGG | - | chr3_1:17890917-17890936 | Msa0351310:intron | 30.0% | |
| ATAATTCAGGGATAACAGAA+GGG | - | chr3_1:17890987-17891006 | Msa0351310:intron | 30.0% | |
| !! | CAACTTTTAAAAACCATTGC+CGG | - | chr3_1:17891050-17891069 | Msa0351310:intron | 30.0% |
| TGCTTAGAAATTCTGTACTT+CGG | - | chr3_1:17891326-17891345 | Msa0351310:intron | 30.0% | |
| !! | TAATTTTGACGACAACAATG+AGG | - | chr3_1:17891464-17891483 | Msa0351310:intron | 30.0% |
| AACAATGAGGACCTTATATA+CGG | - | chr3_1:17891477-17891496 | Msa0351310:intron | 30.0% | |
| CAAATAAAATGAGCAACTTG+GGG | + | chr3_1:17891689-17891708 | None:intergenic | 30.0% | |
| ACTCAGAAACATTCAACTAA+TGG | + | chr3_1:17891745-17891764 | None:intergenic | 30.0% | |
| AATGCCATTATTAGACATCA+AGG | + | chr3_1:17891795-17891814 | None:intergenic | 30.0% | |
| TTGATGTCTAATAATGGCAT+TGG | - | chr3_1:17891794-17891813 | Msa0351310:intron | 30.0% | |
| CAAGATTAATTGTAACAGCA+GGG | - | chr3_1:17891913-17891932 | Msa0351310:intron | 30.0% | |
| ATATACATTACACACTTAGC+CGG | - | chr3_1:17891938-17891957 | Msa0351310:intron | 30.0% | |
| TCAAATCCAAAAATCGATGT+CGG | - | chr3_1:17891992-17892011 | Msa0351310:intron | 30.0% | |
| TCCGCAACAAATACTTTAAT+CGG | - | chr3_1:17892037-17892056 | Msa0351310:intron | 30.0% | |
| AAGAAACGTAAAGTTGTAGA+AGG | - | chr3_1:17892127-17892146 | Msa0351310:intron | 30.0% | |
| ! | GTTTTCAATTTTCACCTTGT+TGG | - | chr3_1:17892214-17892233 | Msa0351310:CDS | 30.0% |
| TTTAATTGCTAAGTGGTAGA+TGG | - | chr3_1:17892510-17892529 | Msa0351310:five_prime_UTR | 30.0% | |
| !!! | TTGAGGGTACATTTTGGTTT+TGG | + | chr3_1:17887631-17887650 | None:intergenic | 35.0% |
| !! | TTGTTGTTGAGGGTACATTT+TGG | + | chr3_1:17887637-17887656 | None:intergenic | 35.0% |
| TGTTGTTGCTGGAAATTGTA+AGG | + | chr3_1:17887672-17887691 | None:intergenic | 35.0% | |
| ! | TTATGTTATGTCATTTGGGG+TGG | - | chr3_1:17888089-17888108 | Msa0351310:CDS | 35.0% |
| !! | AGTGTTTTAAGTCGTGATTG+CGG | + | chr3_1:17888636-17888655 | None:intergenic | 35.0% |
| !! | CTATTCGGTGTTGTCAATAA+CGG | + | chr3_1:17888782-17888801 | None:intergenic | 35.0% |
| ATATCTAGAAGTCAAACTCG+TGG | - | chr3_1:17888838-17888857 | Msa0351310:intron | 35.0% | |
| !!! | TGTATCGGGTGGTTTTTTAA+GGG | + | chr3_1:17889032-17889051 | None:intergenic | 35.0% |
| !!! | TTGTATCGGGTGGTTTTTTA+AGG | + | chr3_1:17889033-17889052 | None:intergenic | 35.0% |
| !! | GGTTTGGTTTCTTTTGTATC+GGG | + | chr3_1:17889046-17889065 | None:intergenic | 35.0% |
| !! | GGGTTTGGTTTCTTTTGTAT+CGG | + | chr3_1:17889047-17889066 | None:intergenic | 35.0% |
| ! | TGTCAAATGGTGACTTTTGT+TGG | - | chr3_1:17889237-17889256 | Msa0351310:intron | 35.0% |
| !! | TATTCGGTGTTGTCAATAAC+AGG | + | chr3_1:17888781-17888800 | None:intergenic | 35.0% |
| TGTTATTGACAACACCGAAT+AGG | - | chr3_1:17889293-17889312 | Msa0351310:intron | 35.0% | |
| GTGAGAACAATAAAATAGGG+AGG | - | chr3_1:17889541-17889560 | Msa0351310:intron | 35.0% | |
| ! | TTGATTTGATCCCGTATGTT+AGG | - | chr3_1:17889574-17889593 | Msa0351310:intron | 35.0% |
| TGATTTGATCCCGTATGTTA+GGG | - | chr3_1:17889575-17889594 | Msa0351310:intron | 35.0% | |
| TCTTATGAAAGTCACATAGC+TGG | - | chr3_1:17889842-17889861 | Msa0351310:intron | 35.0% | |
| TTCGCATGAGATGTAATAGT+AGG | + | chr3_1:17889905-17889924 | None:intergenic | 35.0% | |
| ACTGACACAAGTAGTATACA+AGG | - | chr3_1:17889932-17889951 | Msa0351310:CDS | 35.0% | |
| ACAAGTAGTATACAAGGACA+AGG | - | chr3_1:17889938-17889957 | Msa0351310:CDS | 35.0% | |
| CAAGTAGTATACAAGGACAA+GGG | - | chr3_1:17889939-17889958 | Msa0351310:CDS | 35.0% | |
| ATACAAGGACAAGGGTTAAT+TGG | - | chr3_1:17889947-17889966 | Msa0351310:CDS | 35.0% | |
| GCATATATCAAACATCTTGC+TGG | - | chr3_1:17890058-17890077 | Msa0351310:CDS | 35.0% | |
| ACATAATGCACACACTTGTA+TGG | - | chr3_1:17890212-17890231 | Msa0351310:CDS | 35.0% | |
| TGTACCTATTCTCTTGTTCA+TGG | - | chr3_1:17890320-17890339 | Msa0351310:CDS | 35.0% | |
| AGAACCATGAACAAGAGAAT+AGG | + | chr3_1:17890327-17890346 | None:intergenic | 35.0% | |
| TTATCTTAATTGGACCCACA+AGG | - | chr3_1:17890362-17890381 | Msa0351310:intron | 35.0% | |
| ! | TTGTGGCTTTTGCAAAATCA+CGG | + | chr3_1:17890535-17890554 | None:intergenic | 35.0% |
| ! | CAAAAGCCACAAAGTGATTT+TGG | - | chr3_1:17890543-17890562 | Msa0351310:intron | 35.0% |
| GAAAATAAGAGAACCATGGT+GGG | + | chr3_1:17890572-17890591 | None:intergenic | 35.0% | |
| TGAAAATAAGAGAACCATGG+TGG | + | chr3_1:17890573-17890592 | None:intergenic | 35.0% | |
| ! | TTTTTCGCAGTGGATAAGTA+AGG | + | chr3_1:17890626-17890645 | None:intergenic | 35.0% |
| AGATGAAGACAGGCTATAAA+TGG | - | chr3_1:17890675-17890694 | Msa0351310:intron | 35.0% | |
| !!! | CTATAAATGGAGGGCATTTT+GGG | - | chr3_1:17890688-17890707 | Msa0351310:intron | 35.0% |
| TAATCAGGTCTCCATAATTC+AGG | - | chr3_1:17890974-17890993 | Msa0351310:intron | 35.0% | |
| AATCAGGTCTCCATAATTCA+GGG | - | chr3_1:17890975-17890994 | Msa0351310:intron | 35.0% | |
| CTTCTGTTATCCCTGAATTA+TGG | + | chr3_1:17890988-17891007 | None:intergenic | 35.0% | |
| CATAATTCAGGGATAACAGA+AGG | - | chr3_1:17890986-17891005 | Msa0351310:intron | 35.0% | |
| GCTTAGAAATTCTGTACTTC+GGG | - | chr3_1:17891327-17891346 | Msa0351310:intron | 35.0% | |
| !!! | TATTTTTTGCGATCCACGAT+TGG | - | chr3_1:17891552-17891571 | Msa0351310:intron | 35.0% |
| GTTGCCTTGATGTCTAATAA+TGG | - | chr3_1:17891788-17891807 | Msa0351310:intron | 35.0% | |
| !! | TTCTTGGCAGCTTTTTGAAA+TGG | + | chr3_1:17891857-17891876 | None:intergenic | 35.0% |
| AAAAGCTGCCAAGAAAATCA+AGG | - | chr3_1:17891862-17891881 | Msa0351310:intron | 35.0% | |
| GCAAGATTAATTGTAACAGC+AGG | - | chr3_1:17891912-17891931 | Msa0351310:intron | 35.0% | |
| ! | GATTAAAGTATTTGTTGCGG+AGG | + | chr3_1:17892038-17892057 | None:intergenic | 35.0% |
| ! | CCCGATTAAAGTATTTGTTG+CGG | + | chr3_1:17892041-17892060 | None:intergenic | 35.0% |
| CCGCAACAAATACTTTAATC+GGG | - | chr3_1:17892038-17892057 | Msa0351310:intron | 35.0% | |
| !!! | CTTCTTTGGTTTTGGTTGAT+CGG | + | chr3_1:17892083-17892102 | None:intergenic | 35.0% |
| AAACGTAAAGTTGTAGAAGG+AGG | - | chr3_1:17892130-17892149 | Msa0351310:intron | 35.0% | |
| AATGTGCACTTTATGCAATG+TGG | - | chr3_1:17892174-17892193 | Msa0351310:CDS | 35.0% | |
| GGTGAAAATTGAAAACTGTC+TGG | + | chr3_1:17892210-17892229 | None:intergenic | 35.0% | |
| ATGCAGTTTGTCATTGCTAA+TGG | - | chr3_1:17892357-17892376 | Msa0351310:CDS | 35.0% | |
| ! | TAGCCTTTTACTTGTGTTAC+AGG | - | chr3_1:17892413-17892432 | Msa0351310:five_prime_UTR | 35.0% |
| GTTCCTGTAACACAAGTAAA+AGG | + | chr3_1:17892419-17892438 | None:intergenic | 35.0% | |
| ATAACTTCCATGATGCATTG+AGG | - | chr3_1:17892474-17892493 | Msa0351310:five_prime_UTR | 35.0% | |
| ! | GAGCTTGGTATTGTTGTTGA+GGG | + | chr3_1:17887647-17887666 | None:intergenic | 40.0% |
| ! | TGAGCTTGGTATTGTTGTTG+AGG | + | chr3_1:17887648-17887667 | None:intergenic | 40.0% |
| GGAAATTGTAAGGTTGAGCT+TGG | + | chr3_1:17887662-17887681 | None:intergenic | 40.0% | |
| !! | TATCTGATGGGTTCAGATTG+AGG | + | chr3_1:17887834-17887853 | None:intergenic | 40.0% |
| AAGTTCTGTTAAGTGGGTGT+TGG | - | chr3_1:17888294-17888313 | Msa0351310:intron | 40.0% | |
| TGGCGTGATTGTCATAATCA+GGG | - | chr3_1:17888508-17888527 | Msa0351310:intron | 40.0% | |
| ! | TCAATGGTGGCTTTTGTTAG+TGG | - | chr3_1:17888727-17888746 | Msa0351310:intron | 40.0% |
| GTGTTGTCAATAACGGTTAG+CGG | + | chr3_1:17888775-17888794 | None:intergenic | 40.0% | |
| CGTTATTGACAACACCGAAT+AGG | - | chr3_1:17888780-17888799 | Msa0351310:intron | 40.0% | |
| !! | CGAGAAGCACTAATAAGCTT+GGG | - | chr3_1:17888945-17888964 | Msa0351310:intron | 40.0% |
| AAGCACTAATAAGCTTGGGT+GGG | - | chr3_1:17888949-17888968 | Msa0351310:intron | 40.0% | |
| !!! | GTATCGGGTGGTTTTTTAAG+GGG | + | chr3_1:17889031-17889050 | None:intergenic | 40.0% |
| ! | TTGGTTTCTTTTGTATCGGG+TGG | + | chr3_1:17889043-17889062 | None:intergenic | 40.0% |
| GTAAGCACATGAAGACATGT+GGG | + | chr3_1:17889141-17889160 | None:intergenic | 40.0% | |
| CAACACCGAATAGGACAATA+TGG | - | chr3_1:17888789-17888808 | Msa0351310:intron | 40.0% | |
| CTTCTAATATTGCAGGCTGT+TGG | - | chr3_1:17889650-17889669 | Msa0351310:intron | 40.0% | |
| ACATGGCCACCACAAATTTA+TGG | - | chr3_1:17889728-17889747 | Msa0351310:intron | 40.0% | |
| TCGTTGCCATAAATTTGTGG+TGG | + | chr3_1:17889737-17889756 | None:intergenic | 40.0% | |
| GTCTCGTTGCCATAAATTTG+TGG | + | chr3_1:17889740-17889759 | None:intergenic | 40.0% | |
| !! | TTGGTGACATTGGTTTGGTT+AGG | + | chr3_1:17889776-17889795 | None:intergenic | 40.0% |
| ! | AAGCTTTGGTGACATTGGTT+TGG | + | chr3_1:17889781-17889800 | None:intergenic | 40.0% |
| ! | TCTCAAAGCTTTGGTGACAT+TGG | + | chr3_1:17889786-17889805 | None:intergenic | 40.0% |
| CACTTCACATCTCAAAGCTT+TGG | + | chr3_1:17889795-17889814 | None:intergenic | 40.0% | |
| ! | ATCAACCTGTTTCTTAGGCT+CGG | + | chr3_1:17889990-17890009 | None:intergenic | 40.0% |
| ! | GCAGAATCAACCTGTTTCTT+AGG | + | chr3_1:17889995-17890014 | None:intergenic | 40.0% |
| !! | GAAACAGGTTGATTCTGCAA+CGG | - | chr3_1:17889997-17890016 | Msa0351310:CDS | 40.0% |
| TAGCTGGTTATGTGCATGTT+TGG | - | chr3_1:17890476-17890495 | Msa0351310:intron | 40.0% | |
| ATCCACTGCGAAAAAGTTAC+TGG | - | chr3_1:17890631-17890650 | Msa0351310:intron | 40.0% | |
| !!! | TTCCAGTAACTTTTTCGCAG+TGG | + | chr3_1:17890636-17890655 | None:intergenic | 40.0% |
| TGAAGACAGGCTATAAATGG+AGG | - | chr3_1:17890678-17890697 | Msa0351310:intron | 40.0% | |
| GAAGACAGGCTATAAATGGA+GGG | - | chr3_1:17890679-17890698 | Msa0351310:intron | 40.0% | |
| !!! | GCTATAAATGGAGGGCATTT+TGG | - | chr3_1:17890687-17890706 | Msa0351310:intron | 40.0% |
| CCATGTCATAGTCAAATTGC+TGG | + | chr3_1:17890754-17890773 | None:intergenic | 40.0% | |
| CCAGCAATTTGACTATGACA+TGG | - | chr3_1:17890751-17890770 | Msa0351310:intron | 40.0% | |
| TATACCTCTGTAGTTAGCAG+AGG | + | chr3_1:17890883-17890902 | None:intergenic | 40.0% | |
| AGAAAATGCAGCTCCAAAAG+GGG | + | chr3_1:17891076-17891095 | None:intergenic | 40.0% | |
| CAGAAAATGCAGCTCCAAAA+GGG | + | chr3_1:17891077-17891096 | None:intergenic | 40.0% | |
| TCAGAAAATGCAGCTCCAAA+AGG | + | chr3_1:17891078-17891097 | None:intergenic | 40.0% | |
| CGATCTTTCTTGAAAGCTGT+AGG | - | chr3_1:17891142-17891161 | Msa0351310:intron | 40.0% | |
| TTCCTGTATGGCCGTATATA+AGG | + | chr3_1:17891491-17891510 | None:intergenic | 40.0% | |
| GAGTGCTATCATTTCCTGTA+TGG | + | chr3_1:17891503-17891522 | None:intergenic | 40.0% | |
| CTTTACCCTATTGAACTGCA+AGG | - | chr3_1:17891712-17891731 | Msa0351310:intron | 40.0% | |
| TTACGCCTTGCAGTTCAATA+GGG | + | chr3_1:17891720-17891739 | None:intergenic | 40.0% | |
| TTTACGCCTTGCAGTTCAAT+AGG | + | chr3_1:17891721-17891740 | None:intergenic | 40.0% | |
| AACCTACGAGTCACAAAAAG+TGG | + | chr3_1:17891771-17891790 | None:intergenic | 40.0% | |
| GCTTGAATTCGGCAATAGAT+GGG | + | chr3_1:17891820-17891839 | None:intergenic | 40.0% | |
| ATTGCCGAATTCAAGCGTAA+CGG | - | chr3_1:17891824-17891843 | Msa0351310:intron | 40.0% | |
| AACACCGTTACGCTTGAATT+CGG | + | chr3_1:17891831-17891850 | None:intergenic | 40.0% | |
| ! | CTGAGCAACCTTGATTTTCT+TGG | + | chr3_1:17891873-17891892 | None:intergenic | 40.0% |
| ! | TAAAGTATTTGTTGCGGAGG+CGG | + | chr3_1:17892035-17892054 | None:intergenic | 40.0% |
| CGATCAACCAAAACCAAAGA+AGG | - | chr3_1:17892081-17892100 | Msa0351310:intron | 40.0% | |
| !! | TCTGATGCCTTCTTTGGTTT+TGG | + | chr3_1:17892091-17892110 | None:intergenic | 40.0% |
| ! | TCAAGTTCTGATGCCTTCTT+TGG | + | chr3_1:17892097-17892116 | None:intergenic | 40.0% |
| TCTCATCTAGACTTGAAGAC+AGG | - | chr3_1:17892323-17892342 | Msa0351310:CDS | 40.0% | |
| CTCATCTAGACTTGAAGACA+GGG | - | chr3_1:17892324-17892343 | Msa0351310:CDS | 40.0% | |
| TTGCAAACCTCAATGCATCA+TGG | + | chr3_1:17892484-17892503 | None:intergenic | 40.0% | |
| TCAAAAGGGGGTGGAAAATG+AGG | + | chr3_1:17887551-17887570 | None:intergenic | 45.0% | |
| ACTTGTGAATCAAAAGGGGG+TGG | + | chr3_1:17887560-17887579 | None:intergenic | 45.0% | |
| ! | AGGGTTGTTGTTGTTGTTGC+TGG | + | chr3_1:17887683-17887702 | None:intergenic | 45.0% |
| GAGGATGAAGTGAAGGATCA+GGG | + | chr3_1:17887719-17887738 | None:intergenic | 45.0% | |
| GAGGTGTAAAGAGAAACAGG+AGG | + | chr3_1:17887780-17887799 | None:intergenic | 45.0% | |
| ! | TGGGAGGTGTAAAGAGAAAC+AGG | + | chr3_1:17887783-17887802 | None:intergenic | 45.0% |
| ! | GTGATAATCTGTTGGTTGGG+AGG | + | chr3_1:17887799-17887818 | None:intergenic | 45.0% |
| ATGGAATGATACCGCGATTG+TGG | - | chr3_1:17888393-17888412 | Msa0351310:intron | 45.0% | |
| TGGAATGATACCGCGATTGT+GGG | - | chr3_1:17888394-17888413 | Msa0351310:intron | 45.0% | |
| ATGACAATCACCCACAATCG+CGG | + | chr3_1:17888407-17888426 | None:intergenic | 45.0% | |
| ATGGAACGATACCGCAATTC+TGG | - | chr3_1:17888488-17888507 | Msa0351310:intron | 45.0% | |
| TGACAATCACGCCAGAATTG+CGG | + | chr3_1:17888502-17888521 | None:intergenic | 45.0% | |
| CTGGCGTGATTGTCATAATC+AGG | - | chr3_1:17888507-17888526 | Msa0351310:intron | 45.0% | |
| TGTAGCGACAATCGCAGTAT+CGG | + | chr3_1:17888547-17888566 | None:intergenic | 45.0% | |
| CTTATTAGTGCTTCTCGCAC+GGG | + | chr3_1:17888942-17888961 | None:intergenic | 45.0% | |
| GCTTATTAGTGCTTCTCGCA+CGG | + | chr3_1:17888943-17888962 | None:intergenic | 45.0% | |
| !! | GCGAGAAGCACTAATAAGCT+TGG | - | chr3_1:17888944-17888963 | Msa0351310:intron | 45.0% |
| ! | GAAGCACTAATAAGCTTGGG+TGG | - | chr3_1:17888948-17888967 | Msa0351310:intron | 45.0% |
| TTGATCGAGCCACGTTTGTA+CGG | + | chr3_1:17889005-17889024 | None:intergenic | 45.0% | |
| CAAACCCAAGAGTAATGACG+CGG | - | chr3_1:17889060-17889079 | Msa0351310:intron | 45.0% | |
| AAACCCAAGAGTAATGACGC+GGG | - | chr3_1:17889061-17889080 | Msa0351310:intron | 45.0% | |
| ATTCCCGCGTCATTACTCTT+GGG | + | chr3_1:17889067-17889086 | None:intergenic | 45.0% | |
| TATTCCCGCGTCATTACTCT+TGG | + | chr3_1:17889068-17889087 | None:intergenic | 45.0% | |
| GGTAAGCACATGAAGACATG+TGG | + | chr3_1:17889142-17889161 | None:intergenic | 45.0% | |
| ATGACTGTGAGTGTTTCACG+TGG | - | chr3_1:17889350-17889369 | Msa0351310:intron | 45.0% | |
| AGTTTACCTTCTGCGTGGAA+TGG | - | chr3_1:17889704-17889723 | Msa0351310:intron | 45.0% | |
| GTGATCCTATCTTGCCTTGT+GGG | + | chr3_1:17890379-17890398 | None:intergenic | 45.0% | |
| AGTGATCCTATCTTGCCTTG+TGG | + | chr3_1:17890380-17890399 | None:intergenic | 45.0% | |
| AAGGCAAGATAGGATCACTG+TGG | - | chr3_1:17890381-17890400 | Msa0351310:intron | 45.0% | |
| AGGCAAGATAGGATCACTGT+GGG | - | chr3_1:17890382-17890401 | Msa0351310:intron | 45.0% | |
| GGGTTGCCAAAATCACTTTG+TGG | + | chr3_1:17890552-17890571 | None:intergenic | 45.0% | |
| ! | GTTCTTCTGGAGATGAAGAC+AGG | - | chr3_1:17890665-17890684 | Msa0351310:intron | 45.0% |
| GCTAGACACTACTGAAATCG+AGG | + | chr3_1:17890822-17890841 | None:intergenic | 45.0% | |
| !! | CTGTAGCGGATATAATGTCG+TGG | + | chr3_1:17890860-17890879 | None:intergenic | 45.0% |
| GACCTTATATACGGCCATAC+AGG | - | chr3_1:17891486-17891505 | Msa0351310:intron | 45.0% | |
| AAAACCAGTGTTGCCAATCG+TGG | + | chr3_1:17891568-17891587 | None:intergenic | 45.0% | |
| GAGCAACTTGGGGAAAATGT+AGG | + | chr3_1:17891679-17891698 | None:intergenic | 45.0% | |
| !!! | GACCACTTTTTGTGACTCGT+AGG | - | chr3_1:17891766-17891785 | Msa0351310:intron | 45.0% |
| CGCTTGAATTCGGCAATAGA+TGG | + | chr3_1:17891821-17891840 | None:intergenic | 45.0% | |
| GAATTCAAGCGTAACGGTGT+TGG | - | chr3_1:17891830-17891849 | Msa0351310:intron | 45.0% | |
| !!! | CTAGTGCCGACATCGATTTT+TGG | + | chr3_1:17892001-17892020 | None:intergenic | 45.0% |
| ! | CAGCATGTTTCTGACCAACA+AGG | + | chr3_1:17892231-17892250 | None:intergenic | 45.0% |
| TGGTCAGAAACATGCTGCTA+TGG | - | chr3_1:17892234-17892253 | Msa0351310:CDS | 45.0% | |
| ACATGCTGCTATGGTGAAGA+AGG | - | chr3_1:17892243-17892262 | Msa0351310:CDS | 45.0% | |
| TATGGTGAAGAAGGCAGGAT+CGG | - | chr3_1:17892252-17892271 | Msa0351310:CDS | 45.0% | |
| !! | AAAAAAAAAATTAACAAATT+GGG | + | chr3_1:17887502-17887521 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAATTAACAAAT+TGG | + | chr3_1:17887503-17887522 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTAGAAA+CGG | - | chr3_1:17888895-17888914 | Msa0351310:intron | 5.0% |
| GGAGGATGAAGTGAAGGATC+AGG | + | chr3_1:17887720-17887739 | None:intergenic | 50.0% | |
| GATCCTTCACTTCATCCTCC+TGG | - | chr3_1:17887720-17887739 | Msa0351310:exon | 50.0% | |
| GATTGTCGCTACAGCAAACG+AGG | - | chr3_1:17888554-17888573 | Msa0351310:intron | 50.0% | |
| AATCGGTTGCCGTACAAACG+TGG | - | chr3_1:17888993-17889012 | Msa0351310:intron | 50.0% | |
| CGCGTCATTACTCTTGGGTT+TGG | + | chr3_1:17889062-17889081 | None:intergenic | 50.0% | |
| !!! | GGTTTTTGGTGTTGACGCTG+GGG | + | chr3_1:17889114-17889133 | None:intergenic | 50.0% |
| !!! | CGGTTTTTGGTGTTGACGCT+GGG | + | chr3_1:17889115-17889134 | None:intergenic | 50.0% |
| ACATGAAGACATGTGGGTGG+CGG | + | chr3_1:17889135-17889154 | None:intergenic | 50.0% | |
| AGCACATGAAGACATGTGGG+TGG | + | chr3_1:17889138-17889157 | None:intergenic | 50.0% | |
| GACGCTTCTGACTTTCACTC+TGG | - | chr3_1:17889613-17889632 | Msa0351310:intron | 50.0% | |
| CACGCAGAAGGTAAACTTGC+AGG | + | chr3_1:17889701-17889720 | None:intergenic | 50.0% | |
| CTGCAAGTTTACCTTCTGCG+TGG | - | chr3_1:17889699-17889718 | Msa0351310:intron | 50.0% | |
| CATGTACCATTCCACGCAGA+AGG | + | chr3_1:17889713-17889732 | None:intergenic | 50.0% | |
| CTTCTGCGTGGAATGGTACA+TGG | - | chr3_1:17889711-17889730 | Msa0351310:intron | 50.0% | |
| AGGCTCGGATTGCTTGACTA+CGG | + | chr3_1:17889975-17889994 | None:intergenic | 50.0% | |
| GCAATCCGAGCCTAAGAAAC+AGG | - | chr3_1:17889982-17890001 | Msa0351310:CDS | 50.0% | |
| TTGGACCCACAAGGCAAGAT+AGG | - | chr3_1:17890371-17890390 | Msa0351310:intron | 50.0% | |
| !! | ATGTGCATGTTTGGTGTCGC+TGG | - | chr3_1:17890485-17890504 | Msa0351310:intron | 50.0% |
| !! | TGTGCATGTTTGGTGTCGCT+GGG | - | chr3_1:17890486-17890505 | Msa0351310:intron | 50.0% |
| !! | GTGATTTTGGCAACCCACCA+TGG | - | chr3_1:17890556-17890575 | Msa0351310:intron | 50.0% |
| GTTGCAACGTTGACCACCAT+GGG | - | chr3_1:17890773-17890792 | Msa0351310:intron | 50.0% | |
| AATGTCGTGGCGTGTCATAG+CGG | + | chr3_1:17890847-17890866 | None:intergenic | 50.0% | |
| GTAGTTAGCAGAGGCTGTAG+CGG | + | chr3_1:17890874-17890893 | None:intergenic | 50.0% | |
| ACAGCCTCTGCTAACTACAG+AGG | - | chr3_1:17890876-17890895 | Msa0351310:intron | 50.0% | |
| TCAAGGTTGCTCAGTCTGCA+TGG | - | chr3_1:17891879-17891898 | Msa0351310:intron | 50.0% | |
| !! | TCGGTACCTGGCTTTTCTTG+TGG | + | chr3_1:17892064-17892083 | None:intergenic | 50.0% |
| !!! | GGTTTTGGTTGATCGGTACC+TGG | + | chr3_1:17892076-17892095 | None:intergenic | 50.0% |
| GTGCCAGGAGGATGAAGTGA+AGG | + | chr3_1:17887726-17887745 | None:intergenic | 55.0% | |
| TTTGCAAGTGGGTCAGTGCC+AGG | + | chr3_1:17887741-17887760 | None:intergenic | 55.0% | |
| TGTCGCTACAGCAAACGAGG+TGG | - | chr3_1:17888557-17888576 | Msa0351310:intron | 55.0% | |
| TTGACGCTGGGGTATGCATG+TGG | + | chr3_1:17889103-17889122 | None:intergenic | 55.0% | |
| !!! | GCGGTTTTTGGTGTTGACGC+TGG | + | chr3_1:17889116-17889135 | None:intergenic | 55.0% |
| !! | GACATGTGGGTGGCGGTTTT+TGG | + | chr3_1:17889128-17889147 | None:intergenic | 55.0% |
| GGCTCGGATTGCTTGACTAC+GGG | + | chr3_1:17889974-17889993 | None:intergenic | 55.0% | |
| ! | TGGGAGAAAGCATGCTGCTC+AGG | - | chr3_1:17890078-17890097 | Msa0351310:CDS | 55.0% |
| GGTTGCAACGTTGACCACCA+TGG | - | chr3_1:17890772-17890791 | Msa0351310:intron | 55.0% | |
| ! | TTTTGACGTAGCGCCCATGG+TGG | + | chr3_1:17890789-17890808 | None:intergenic | 55.0% |
| !! | GCATTTTGACGTAGCGCCCA+TGG | + | chr3_1:17890792-17890811 | None:intergenic | 55.0% |
| ! | AAACCATTGCCGGCCCCTTT+TGG | - | chr3_1:17891060-17891079 | Msa0351310:intron | 55.0% |
| AATGCAGCTCCAAAAGGGGC+CGG | + | chr3_1:17891072-17891091 | None:intergenic | 55.0% | |
| AGATCGTACAAGCCTGTCGC+AGG | + | chr3_1:17891128-17891147 | None:intergenic | 55.0% | |
| CGATCCACGATTGGCAACAC+TGG | - | chr3_1:17891561-17891580 | Msa0351310:intron | 55.0% | |
| ! | AGTATTTGTTGCGGAGGCGG+TGG | + | chr3_1:17892032-17892051 | None:intergenic | 55.0% |
| ATCGGGCCACAAGAAAAGCC+AGG | - | chr3_1:17892055-17892074 | Msa0351310:intron | 55.0% | |
| GAAGGAGGAGCTGCAGTTGA+TGG | - | chr3_1:17892145-17892164 | Msa0351310:intron | 55.0% | |
| GCTGCTATGGTGAAGAAGGC+AGG | - | chr3_1:17892247-17892266 | Msa0351310:CDS | 55.0% | |
| AAGAAGGCAGGATCGGTCAC+TGG | - | chr3_1:17892259-17892278 | Msa0351310:CDS | 55.0% | |
| ! | CGGTCACTGGTTGAGCTGAT+CGG | - | chr3_1:17892272-17892291 | Msa0351310:CDS | 55.0% |
| TGGTTGAGCTGATCGGTCAC+TGG | - | chr3_1:17892279-17892298 | Msa0351310:CDS | 55.0% | |
| ! | AGCTGATCGGTCACTGGTTG+AGG | - | chr3_1:17892285-17892304 | Msa0351310:CDS | 55.0% |
| ATACCGTGCACACCTGCGAC+AGG | - | chr3_1:17891113-17891132 | Msa0351310:intron | 60.0% | |
| AAGCCTGTCGCAGGTGTGCA+CGG | + | chr3_1:17891119-17891138 | None:intergenic | 60.0% | |
| GCAAGTGGGTCAGTGCCAGG+AGG | + | chr3_1:17887738-17887757 | None:intergenic | 65.0% | |
| GTGCTTCTCGCACGGGCTTG+TGG | + | chr3_1:17888935-17888954 | None:intergenic | 65.0% | |
| GCTCCAAAAGGGGCCGGCAA+TGG | + | chr3_1:17891066-17891085 | None:intergenic | 65.0% | |
| TGTTGCGGAGGCGGTGGAAG+TGG | + | chr3_1:17892026-17892045 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 17887466 | 17892555 | 17887466 | ID=Msa0351310;Name=Msa0351310 |
| chr3_1 | mRNA | 17887466 | 17892555 | 17887466 | ID=Msa0351310-mRNA-1;Parent=Msa0351310;Name=Msa0351310-mRNA-1;_AED=0.16;_eAED=0.16;_QI=173|1|1|1|1|1|3|270|384 |
| chr3_1 | exon | 17887466 | 17888233 | 17887466 | ID=Msa0351310-mRNA-1:exon:4262;Parent=Msa0351310-mRNA-1 |
| chr3_1 | exon | 17889922 | 17890356 | 17889922 | ID=Msa0351310-mRNA-1:exon:4261;Parent=Msa0351310-mRNA-1 |
| chr3_1 | exon | 17892161 | 17892555 | 17892161 | ID=Msa0351310-mRNA-1:exon:4260;Parent=Msa0351310-mRNA-1 |
| chr3_1 | five_prime_UTR | 17892383 | 17892555 | 17892383 | ID=Msa0351310-mRNA-1:five_prime_utr;Parent=Msa0351310-mRNA-1 |
| chr3_1 | CDS | 17892161 | 17892382 | 17892161 | ID=Msa0351310-mRNA-1:cds;Parent=Msa0351310-mRNA-1 |
| chr3_1 | CDS | 17889922 | 17890356 | 17889922 | ID=Msa0351310-mRNA-1:cds;Parent=Msa0351310-mRNA-1 |
| chr3_1 | CDS | 17887736 | 17888233 | 17887736 | ID=Msa0351310-mRNA-1:cds;Parent=Msa0351310-mRNA-1 |
| chr3_1 | three_prime_UTR | 17887466 | 17887735 | 17887466 | ID=Msa0351310-mRNA-1:three_prime_utr;Parent=Msa0351310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
