AlfalfaGEDB | Msa0352440

M. sativa cultivar zhongmu-4 / Msa0352440

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0352440	KEH22406.1	74.510	306	58	2	469	772	33	320	2.96e-149	451

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0352440	sp\|Q9SZL8\|FRS5_ARATH	35.950	242	151	4	528	767	77	316	1.41e-31	135

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0352440	A0A072TZ24	74.510	306	58	2	469	772	33	320	1.41e-149	451

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0352440	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0352440	MtrunA17_Chr2g0287651	71.154	260	75	0	507	766	58	317	6.65e-129	407
Msa0352440	MtrunA17_Chr1g0203051	36.741	313	190	5	457	766	12	319	2.87e-53	196
Msa0352440	MtrunA17_Chr2g0310521	83.333	90	15	0	1	90	1	90	7.22e-46	159
Msa0352440	MtrunA17_Chr2g0319671	79.208	101	18	1	1	101	1	98	5.42e-45	164
Msa0352440	MtrunA17_Chr5g0448761	35.510	245	152	4	528	767	64	307	1.83e-32	135
Msa0352440	MtrunA17_Chr8g0363841	32.906	234	149	4	532	762	25	253	1.54e-27	119
Msa0352440	MtrunA17_Chr7g0258861	29.482	251	175	2	528	778	14	262	1.29e-25	108
Msa0352440	MtrunA17_Chr1g0202341	30.894	246	163	4	523	766	50	290	3.94e-25	111
Msa0352440	MtrunA17_Chr2g0324011	30.290	241	163	3	528	767	14	250	1.88e-23	105
Msa0352440	MtrunA17_Chr1g0198761	29.435	248	163	5	530	767	53	298	2.15e-23	106

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0352440	AT4G38180.1	35.950	242	151	4	528	767	77	316	1.43e-32	135
Msa0352440	AT4G15090.1	29.796	245	166	5	528	770	55	295	2.07e-25	113
Msa0352440	AT4G15090.5	29.796	245	166	5	528	770	55	295	2.07e-25	113
Msa0352440	AT4G15090.3	29.796	245	166	5	528	770	55	295	2.07e-25	113
Msa0352440	AT4G15090.2	29.796	245	166	5	528	770	55	295	2.07e-25	113
Msa0352440	AT4G15090.4	29.796	245	166	5	528	770	55	295	2.07e-25	113
Msa0352440	AT3G22170.2	28.840	319	187	7	468	770	10	304	4.93e-24	108
Msa0352440	AT3G22170.1	28.840	319	187	7	468	770	10	304	4.93e-24	108
Msa0352440	AT1G10240.2	29.615	260	148	6	530	770	54	297	8.48e-23	104
Msa0352440	AT1G10240.1	29.615	260	148	6	530	770	54	297	8.48e-23	104

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Find 171 sgRNAs with CRISPR-Local

Find 594 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACAACAATGACTTTA+CGG	0.325210	3_1:-21275170	Msa0352440:CDS
AAACATATCCGATCATTGTT+GGG	0.491804	3_1:-21275093	Msa0352440:CDS
AAAGATTTCAGAGATGTTCC+AGG	0.450934	3_1:+21278181	None:intergenic
AACAATGACTTTACGGATTT+TGG	0.057115	3_1:-21275163	Msa0352440:CDS
AAGAAAGCAGGTAATGAAAC+TGG	0.424426	3_1:-21279458	Msa0352440:CDS
AAGAATACTCAAGGGAATAC+AGG	0.512005	3_1:-21274989	Msa0352440:CDS
AAGATTTCAGAGATGTTCCA+GGG	0.607867	3_1:+21278182	None:intergenic
AAGGCATGGTAAAGGAAACT+GGG	0.654486	3_1:-21279573	Msa0352440:CDS
AAGGGCAACGATAGGGAAAT+AGG	0.273492	3_1:+21275540	None:intergenic
AAGGGCAACGATCGGGAAAA+GGG	0.523397	3_1:+21275593	None:intergenic

Showing 1 to 10 of 171 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAAATATTAAGACTCCAGTA+AGG	+	chr3_1:21271899-21271918	None:intergenic	30.0%
ATCAACGAATTGTGCAAAAT+AGG	-	chr3_1:21271963-21271982	Msa0352440:CDS	30.0%
TAATGTATGGCATCAACATA+AGG	-	chr3_1:21271998-21272017	Msa0352440:CDS	30.0%
CAACATTAATGGAGATTGTT+AGG	-	chr3_1:21272081-21272100	Msa0352440:intron	30.0%
ATTAATGGAGATTGTTAGGT+TGG	-	chr3_1:21272085-21272104	Msa0352440:intron	30.0%
GGTTTCCAGATTGAATTATA+TGG	-	chr3_1:21272194-21272213	Msa0352440:intron	30.0%
CCTTTCCATATAATTCAATC+TGG	+	chr3_1:21272202-21272221	None:intergenic	30.0%
CCAGATTGAATTATATGGAA+AGG	-	chr3_1:21272199-21272218	Msa0352440:intron	30.0%
ATGTGATAAAGAAGTAGGAA+TGG	+	chr3_1:21272241-21272260	None:intergenic	30.0%
TTGAAAAAACTACCTCAAAG+AGG	-	chr3_1:21272533-21272552	Msa0352440:intron	30.0%

Showing 1 to 10 of 594 entries

Previous1 2 3 4 5…60Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	21271879	21280565	21271879	ID=Msa0352440;Name=Msa0352440
chr3_1	mRNA	21271879	21280565	21271879	ID=Msa0352440-mRNA-1;Parent=Msa0352440;Name=Msa0352440-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0\|0\|0.22\|1\|1\|9\|0\|820
chr3_1	exon	21280263	21280565	21280263	ID=Msa0352440-mRNA-1:exon:4839;Parent=Msa0352440-mRNA-1
chr3_1	exon	21279872	21279957	21279872	ID=Msa0352440-mRNA-1:exon:4838;Parent=Msa0352440-mRNA-1
chr3_1	exon	21279448	21279592	21279448	ID=Msa0352440-mRNA-1:exon:4837;Parent=Msa0352440-mRNA-1
chr3_1	exon	21278154	21278243	21278154	ID=Msa0352440-mRNA-1:exon:4836;Parent=Msa0352440-mRNA-1
chr3_1	exon	21277383	21277478	21277383	ID=Msa0352440-mRNA-1:exon:4835;Parent=Msa0352440-mRNA-1
chr3_1	exon	21276608	21276742	21276608	ID=Msa0352440-mRNA-1:exon:4834;Parent=Msa0352440-mRNA-1
chr3_1	exon	21275512	21275643	21275512	ID=Msa0352440-mRNA-1:exon:4833;Parent=Msa0352440-mRNA-1
chr3_1	exon	21273887	21275197	21273887	ID=Msa0352440-mRNA-1:exon:4832;Parent=Msa0352440-mRNA-1
chr3_1	exon	21271879	21272043	21271879	ID=Msa0352440-mRNA-1:exon:4831;Parent=Msa0352440-mRNA-1
chr3_1	CDS	21280263	21280565	21280263	ID=Msa0352440-mRNA-1:cds;Parent=Msa0352440-mRNA-1
chr3_1	CDS	21279872	21279957	21279872	ID=Msa0352440-mRNA-1:cds;Parent=Msa0352440-mRNA-1
chr3_1	CDS	21279448	21279592	21279448	ID=Msa0352440-mRNA-1:cds;Parent=Msa0352440-mRNA-1
chr3_1	CDS	21278154	21278243	21278154	ID=Msa0352440-mRNA-1:cds;Parent=Msa0352440-mRNA-1
chr3_1	CDS	21277383	21277478	21277383	ID=Msa0352440-mRNA-1:cds;Parent=Msa0352440-mRNA-1
chr3_1	CDS	21276608	21276742	21276608	ID=Msa0352440-mRNA-1:cds;Parent=Msa0352440-mRNA-1
chr3_1	CDS	21275512	21275643	21275512	ID=Msa0352440-mRNA-1:cds;Parent=Msa0352440-mRNA-1
chr3_1	CDS	21273887	21275197	21273887	ID=Msa0352440-mRNA-1:cds;Parent=Msa0352440-mRNA-1
chr3_1	CDS	21271879	21272043	21271879	ID=Msa0352440-mRNA-1:cds;Parent=Msa0352440-mRNA-1

Gene Sequence

>Msa0352440

ATGCAACGAGCAAGTGACCTTACTGGAGTCTTAATATTTGCTGCGCCGATCAACAATAAAATCATTGATCGTGCATGTTCATCTATCAACGAATTGTGCAAAATAGGACTTGCAGAGAATAATGTATGGCATCAACATAAGGAACATAGGTACGAAATTCTCGGTGATATTGAATATTTGAAACAATTTGGTCAGGTTGATGCAACATTAATGGAGATTGTTAGGTTGGTTGGAGTTGGAGAGCTTCAAACTTTACCTATTTTTGATTTGTGTCGAAACCAAAATCCAATGTACACAACGGAAAATGGTTCCACTTCAGCTTTAGGTTTTACAGCTAGACTTGAAACCATTGAAAAAACTACCTCAAAGAGGTCCACAGAGTCTTTGAGGCATGGTAAAGGAAACTGGGAAGCAATATCAGCAGATCCATCGATGCCACTCTTGAGAAACACCGCAACCAAGAATGCAATAAGAATTTCTAATTATTCAACCAATGAAGTGAAGAAAGCAGGTAATGAAACTGGCAGTTCTATGGCGGGTTGCTTCTCGCCTAGGGAATCTACTCTCTTAATTCCCTGGAACATCTCTGAAATCTTTCGTATTGACCTCGCTCCAACTCACCAAACATTGATGGTTGAAGAATCAATTCACATTATATTTGATGACAAAGACTGTGACCCTAAAAAGCCAAATCTTGTTGAAGACATTGCAGATATTCAGATTTATGTTGATGATGTTATCTTTGGTTCTATCAAAGCAAAACTCTACCAACAATTTTCTAAGTTGATGCAGAATGAATGTGAGATGAGCATGACGAGTGAACTCAAGTTCTTCCTTGGGATCAAAATAAACAATAGTAGAAGGATTTTGCCTCCAATCTCCACCCTTTTCCCGATCGTTGCCCTTCCATCGTCGTCTCCAATCTCCAGTCTCCACCCTATTTCCCTATCGTTGCCCTTGGATTCGTATTTCAAGCTCAACTGTGAAATGGAAAACAACAACAATGACTTTACGGATTTTGGTACACCAGAACATGATTACGGTTCTATGGATGTGGATTTGAGAGACGAAACATATCCGATCATTGTTGGGAGTGGTGGTAAATCTACTGAGAATGTTGAACAGAATGCAGATGATGATGATGATGATGATGTGAGTCATGGTAATTTTACGAAGAATACTCAAGGGAATACAGGTGATGAGCGATATGATGAAACTGGAGACAATGAAAGTGATTATGGTGGTTGTTCTGGTGATTATAGTGCTGGTGATAAAGGTGAAGATGATGGAAGTGAATGTGATGAAAGTCAAGGTGATGAAGGTGAAAGTGATGAAAGTGAAGGTGATGAACGTGAAGGTGATGAAGGTGAACGTGATGAAGGTGGAGGTGATGAAAGTGAAGGTGATGAAAGTGAAGGTGATGAAAGTGAAGGTCATGGTAGTGAAGTTGATGAAAGTGAAGGTGATGAAAGTGAAGGTCATGGTAGTGAAGGTGATAACAATTTAGCTGAAGATGATGATGTAGTTATTGGTGAGGAAATGGTAAGGATAAATTCATTAACTGCTGAAGGAATAAGGAAAATGGAATTTGCGAGTGTTGATGAAGCTTACAATTTTTATTATAAGTACGGTAAGTGTAAAGGTTTTGCTGTTAGGAAGAGTGATATTAGACGCAATGTTAACGGTGAGATTGTAATGAGGCAGTATGTATGTAACAAGCAGGGGTTTAGAGAGATGAAGCATTTATCAAGGTTAGATAGGCAAAGAGATCATCGACGTCTCACTCGTACAAAGTGTCCAGCTAGGCTCCGTGTTCACTACAGACCCAAAAAGGGTAGATATGTTGTGTCTATTTTTGAAGAGGGTCACAACCATGAACCTACTCCAACCAATGTTGTGCATTTACACCCTGTTTATCGGAAAATATACGAGGTAGATAAAGCACAAATTGATGGTCTTCAGTCACACGGAATAAGAACTTGTCATATAATGGGATACATGGTGGCTCAGAAGGGTGGATATCCTGGTGTTGGGTTCACTAAGAAAGATCTCTACAATTACTTTGACAAAAAAATGTGTGCTGTTATTAAGGATGGTGATGTTTCAGCTGCTTTAAACTATCTGAATGTTAAGTCATCAACTGATCCACATTCCTTTTGTGAATATTCTGCCACTGATGACAGACGTTTGAAATGTCTATTTTGGGAAGATGGCACAAGCAGATCAGATTATTTCTGCTTTGGCGATGTGGTTGCATTTGACACAACGTACAACAAGAACAAATACCACTATCCGTTGGGACGTTGGATTGATCCAGGATCCTCAAACCTTAGATCAAACGGTTACAACTATGCAGCACACCATAAGGTGGTTCAGGCACATGGAAACAAGGCATCTGGACCATCCACGTGGAGAAACAAAGATCCAACGATGGAGATTGAGAAGTGGAATGAACCAAACTGA

Protein sequence

>Msa0352440

MQRASDLTGVLIFAAPINNKIIDRACSSINELCKIGLAENNVWHQHKEHRYEILGDIEYLKQFGQVDATLMEIVRLVGVGELQTLPIFDLCRNQNPMYTTENGSTSALGFTARLETIEKTTSKRSTESLRHGKGNWEAISADPSMPLLRNTATKNAIRISNYSTNEVKKAGNETGSSMAGCFSPRESTLLIPWNISEIFRIDLAPTHQTLMVEESIHIIFDDKDCDPKKPNLVEDIADIQIYVDDVIFGSIKAKLYQQFSKLMQNECEMSMTSELKFFLGIKINNSRRILPPISTLFPIVALPSSSPISSLHPISLSLPLDSYFKLNCEMENNNNDFTDFGTPEHDYGSMDVDLRDETYPIIVGSGGKSTENVEQNADDDDDDDVSHGNFTKNTQGNTGDERYDETGDNESDYGGCSGDYSAGDKGEDDGSECDESQGDEGESDESEGDEREGDEGERDEGGGDESEGDESEGDESEGHGSEVDESEGDESEGHGSEGDNNLAEDDDVVIGEEMVRINSLTAEGIRKMEFASVDEAYNFYYKYGKCKGFAVRKSDIRRNVNGEIVMRQYVCNKQGFREMKHLSRLDRQRDHRRLTRTKCPARLRVHYRPKKGRYVVSIFEEGHNHEPTPTNVVHLHPVYRKIYEVDKAQIDGLQSHGIRTCHIMGYMVAQKGGYPGVGFTKKDLYNYFDKKMCAVIKDGDVSAALNYLNVKSSTDPHSFCEYSATDDRRLKCLFWEDGTSRSDYFCFGDVVAFDTTYNKNKYHYPLGRWIDPGSSNLRSNGYNYAAHHKVVQAHGNKASGPSTWRNKDPTMEIEKWNEPN*