Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354880 | KEH34821.1 | 91.765 | 85 | 7 | 0 | 1 | 85 | 342 | 426 | 5.70e-45 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354880 | sp|Q8GVE5|TLP2_ARATH | 55.446 | 101 | 40 | 1 | 97 | 197 | 60 | 155 | 1.46e-28 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354880 | A0A072UZG3 | 91.765 | 85 | 7 | 0 | 1 | 85 | 342 | 426 | 2.72e-45 | 165 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0354880 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354880 | MtrunA17_Chr3g0114511 | 91.765 | 85 | 7 | 0 | 1 | 85 | 360 | 444 | 1.94e-48 | 164 |
| Msa0354880 | MtrunA17_Chr5g0404321 | 58.621 | 145 | 51 | 4 | 56 | 197 | 24 | 162 | 2.37e-40 | 142 |
| Msa0354880 | MtrunA17_Chr1g0205421 | 76.136 | 88 | 21 | 0 | 2 | 89 | 360 | 447 | 3.15e-38 | 137 |
| Msa0354880 | MtrunA17_Chr3g0091401 | 80.597 | 67 | 12 | 1 | 129 | 194 | 4 | 70 | 9.44e-31 | 108 |
| Msa0354880 | MtrunA17_Chr8g0373001 | 44.218 | 147 | 76 | 2 | 51 | 197 | 20 | 160 | 1.74e-28 | 110 |
| Msa0354880 | MtrunA17_Chr8g0373361 | 53.465 | 101 | 42 | 1 | 97 | 197 | 70 | 165 | 3.10e-24 | 98.6 |
| Msa0354880 | MtrunA17_Chr3g0107011 | 56.250 | 80 | 35 | 0 | 1 | 80 | 359 | 438 | 1.93e-21 | 91.3 |
| Msa0354880 | MtrunA17_Chr1g0155301 | 46.078 | 102 | 49 | 2 | 97 | 197 | 82 | 178 | 2.80e-20 | 87.8 |
| Msa0354880 | MtrunA17_Chr4g0013131 | 46.988 | 83 | 44 | 0 | 2 | 84 | 354 | 436 | 4.97e-20 | 87.4 |
| Msa0354880 | MtrunA17_Chr5g0432471 | 51.807 | 83 | 40 | 0 | 1 | 83 | 376 | 458 | 5.10e-20 | 87.4 |
| Msa0354880 | MtrunA17_Chr7g0244521 | 48.750 | 80 | 41 | 0 | 1 | 80 | 358 | 437 | 1.14e-18 | 83.6 |
| Msa0354880 | MtrunA17_Chr8g0373331 | 50.000 | 88 | 39 | 1 | 97 | 184 | 64 | 146 | 1.11e-17 | 80.1 |
| Msa0354880 | MtrunA17_Chr1g0156151 | 42.718 | 103 | 50 | 2 | 99 | 197 | 65 | 162 | 5.07e-17 | 76.3 |
| Msa0354880 | MtrunA17_Chr2g0278511 | 42.574 | 101 | 52 | 2 | 97 | 196 | 66 | 161 | 5.35e-17 | 78.6 |
| Msa0354880 | MtrunA17_Chr1g0201891 | 40.594 | 101 | 54 | 2 | 97 | 196 | 65 | 160 | 5.63e-16 | 75.5 |
| Msa0354880 | MtrunA17_Chr2g0286441 | 37.000 | 100 | 58 | 1 | 97 | 196 | 51 | 145 | 2.82e-15 | 73.6 |
| Msa0354880 | MtrunA17_Chr2g0333821 | 34.940 | 83 | 54 | 0 | 1 | 83 | 362 | 444 | 1.05e-12 | 66.2 |
| Msa0354880 | MtrunA17_Chr4g0001331 | 36.782 | 87 | 54 | 1 | 1 | 87 | 367 | 452 | 5.06e-12 | 64.3 |
| Msa0354880 | MtrunA17_Chr1g0196071 | 32.000 | 100 | 63 | 1 | 97 | 196 | 62 | 156 | 1.63e-11 | 62.8 |
| Msa0354880 | MtrunA17_Chr1g0150321 | 45.312 | 64 | 35 | 0 | 20 | 83 | 360 | 423 | 3.55e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354880 | AT2G18280.2 | 55.446 | 101 | 40 | 1 | 97 | 197 | 60 | 155 | 1.49e-29 | 113 |
| Msa0354880 | AT2G18280.1 | 55.446 | 101 | 40 | 1 | 97 | 197 | 60 | 155 | 1.49e-29 | 113 |
| Msa0354880 | AT5G58380.1 | 46.429 | 84 | 45 | 0 | 1 | 84 | 368 | 451 | 5.82e-20 | 87.4 |
| Msa0354880 | AT5G07070.1 | 45.783 | 83 | 45 | 0 | 3 | 85 | 358 | 440 | 2.70e-19 | 85.5 |
| Msa0354880 | AT1G47270.2 | 43.137 | 102 | 52 | 2 | 97 | 197 | 80 | 176 | 1.25e-17 | 80.5 |
| Msa0354880 | AT1G47270.1 | 43.137 | 102 | 52 | 2 | 97 | 197 | 81 | 177 | 1.30e-17 | 80.5 |
| Msa0354880 | AT1G47270.3 | 43.137 | 102 | 52 | 2 | 97 | 197 | 56 | 152 | 1.43e-17 | 80.5 |
| Msa0354880 | AT1G25280.1 | 43.000 | 100 | 51 | 2 | 97 | 195 | 71 | 165 | 6.57e-17 | 78.6 |
| Msa0354880 | AT1G76900.2 | 31.214 | 173 | 103 | 4 | 26 | 197 | 8 | 165 | 1.08e-16 | 78.2 |
| Msa0354880 | AT1G76900.1 | 31.214 | 173 | 103 | 4 | 26 | 197 | 8 | 165 | 1.08e-16 | 78.2 |
| Msa0354880 | AT1G76900.3 | 31.214 | 173 | 103 | 4 | 26 | 197 | 8 | 165 | 1.08e-16 | 78.2 |
| Msa0354880 | AT3G06380.1 | 41.837 | 98 | 50 | 2 | 100 | 197 | 51 | 141 | 4.33e-16 | 76.3 |
| Msa0354880 | AT1G43640.1 | 33.333 | 132 | 82 | 2 | 66 | 196 | 36 | 162 | 5.85e-16 | 75.9 |
| Msa0354880 | AT1G43640.2 | 40.404 | 99 | 53 | 2 | 99 | 196 | 3 | 96 | 7.02e-16 | 75.5 |
| Msa0354880 | AT5G18680.1 | 38.235 | 102 | 57 | 2 | 97 | 197 | 51 | 147 | 2.83e-13 | 68.2 |
| Msa0354880 | AT2G47900.3 | 36.893 | 103 | 58 | 2 | 97 | 197 | 64 | 161 | 3.12e-13 | 68.2 |
| Msa0354880 | AT5G10930.1 | 33.696 | 92 | 61 | 0 | 1 | 92 | 354 | 445 | 3.71e-13 | 67.8 |
| Msa0354880 | AT5G25110.1 | 31.959 | 97 | 66 | 0 | 1 | 97 | 383 | 479 | 3.99e-13 | 67.8 |
| Msa0354880 | AT2G47900.2 | 37.255 | 102 | 58 | 2 | 97 | 197 | 64 | 160 | 5.62e-13 | 67.4 |
| Msa0354880 | AT2G47900.1 | 37.255 | 102 | 58 | 2 | 97 | 197 | 64 | 160 | 5.62e-13 | 67.4 |
| Msa0354880 | AT4G30960.1 | 41.026 | 78 | 46 | 0 | 1 | 78 | 359 | 436 | 1.38e-12 | 66.2 |
| Msa0354880 | AT2G25090.1 | 33.333 | 99 | 63 | 1 | 1 | 96 | 364 | 462 | 1.36e-11 | 63.2 |
| Msa0354880 | AT1G30270.1 | 38.095 | 84 | 51 | 1 | 13 | 96 | 388 | 470 | 3.24e-11 | 62.4 |
| Msa0354880 | AT1G30270.3 | 38.095 | 84 | 51 | 1 | 13 | 96 | 291 | 373 | 3.39e-11 | 62.0 |
Find 35 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTATTTCGTTAAATCAGC+TGG | 0.265135 | 3_1:+28131451 | Msa0354880:CDS |
| TCAAAGACATTGTCTGGATT+TGG | 0.297845 | 3_1:+28129093 | Msa0354880:CDS |
| GACAGCAAGATAGTAGAAAA+AGG | 0.330883 | 3_1:+28128946 | Msa0354880:CDS |
| GTCAACCTTCGGCACTCTTC+GGG | 0.331323 | 3_1:-28131425 | None:intergenic |
| GATATAATTTGAAAGGTAGA+AGG | 0.342290 | 3_1:+28131293 | Msa0354880:intron |
| CACAAATATTTCAGTAGAAA+TGG | 0.344276 | 3_1:-28128976 | None:intergenic |
| CGTCAACCTTCGGCACTCTT+CGG | 0.380299 | 3_1:-28131426 | None:intergenic |
| AAGTCTGAACAATCTCTTGT+AGG | 0.392067 | 3_1:-28131396 | None:intergenic |
| TAGAAGGGACTGAAACTTCT+TGG | 0.395160 | 3_1:+28131309 | Msa0354880:CDS |
| ATGAAGATAGTAAAGAATAA+TGG | 0.397794 | 3_1:+28128903 | Msa0354880:CDS |
| CGGCTCTCAAAGACATTGTC+TGG | 0.402177 | 3_1:+28129087 | Msa0354880:CDS |
| TATGCTCCTTCAATATCTTC+TGG | 0.412245 | 3_1:-28129058 | None:intergenic |
| CTCCAATACAATGCTTCATC+AGG | 0.428430 | 3_1:+28131486 | Msa0354880:CDS |
| CTCCTGATGAAGCATTGTAT+TGG | 0.475488 | 3_1:-28131488 | None:intergenic |
| TAATGGAGAGATGCTAAAGC+TGG | 0.501943 | 3_1:+28128920 | Msa0354880:CDS |
| ATCTCAACAAAATAGAAAGA+TGG | 0.514874 | 3_1:-28129005 | None:intergenic |
| AAATAGAAAACGTCAACCTT+CGG | 0.527851 | 3_1:-28131436 | None:intergenic |
| TCTATTTCGTTAAATCAGCT+GGG | 0.528165 | 3_1:+28131452 | Msa0354880:CDS |
| ATATAATTTGAAAGGTAGAA+GGG | 0.551424 | 3_1:+28131294 | Msa0354880:intron |
| ATTGAAGGAGCATATAATAC+CGG | 0.559236 | 3_1:+28129067 | Msa0354880:CDS |
| GAAGTACCATGGAGATGCAT+CGG | 0.561635 | 3_1:+28129031 | Msa0354880:CDS |
| GGAATACCAGAAGATATTGA+AGG | 0.561904 | 3_1:+28129052 | Msa0354880:CDS |
| CAGACAATGTCTTTGAGAGC+CGG | 0.564127 | 3_1:-28129086 | None:intergenic |
| GTATCAATTGTACTATGTAC+TGG | 0.569209 | 3_1:+28131529 | Msa0354880:CDS |
| CAATACAATGCTTCATCAGG+AGG | 0.578445 | 3_1:+28131489 | Msa0354880:CDS |
| GGTATTCCGATGCATCTCCA+TGG | 0.594498 | 3_1:-28129037 | None:intergenic |
| GGTTGAATTCCAGATCATTG+TGG | 0.595633 | 3_1:-28131632 | None:intergenic |
| GTTGAGATAAAGAAGTACCA+TGG | 0.598830 | 3_1:+28129020 | Msa0354880:CDS |
| GTGCTTCTGAGTGTAAATCA+AGG | 0.607393 | 3_1:+28131357 | Msa0354880:CDS |
| AGACTCCCGAAGAGTGCCGA+AGG | 0.623332 | 3_1:+28131420 | Msa0354880:CDS |
| AATACAATGCTTCATCAGGA+GGG | 0.627635 | 3_1:+28131490 | Msa0354880:CDS |
| TTCTGAGTGTAAATCAAGGA+GGG | 0.649996 | 3_1:+28131361 | Msa0354880:CDS |
| ATTTCAGTAGAAATGGTAAG+CGG | 0.671891 | 3_1:-28128969 | None:intergenic |
| CTTCTGAGTGTAAATCAAGG+AGG | 0.673724 | 3_1:+28131360 | Msa0354880:CDS |
| CATTGTATTGGAGAATCACG+AGG | 0.693531 | 3_1:-28131476 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr3_1:28131072-28131091 | Msa0354880:intron | 0.0% |
| !!! | AATGTTTTTTTTTAACAAAA+TGG | - | chr3_1:28130049-28130068 | None:intergenic | 10.0% |
| !!! | AAGATGATATCTTTTTAAAA+AGG | - | chr3_1:28129420-28129439 | None:intergenic | 15.0% |
| !! | ATGATTTCTTTGATTAAATA+TGG | - | chr3_1:28129459-28129478 | None:intergenic | 15.0% |
| !! | TGTCATTATATAAAAGATTA+GGG | - | chr3_1:28130195-28130214 | None:intergenic | 15.0% |
| !! | TTGTCATTATATAAAAGATT+AGG | - | chr3_1:28130196-28130215 | None:intergenic | 15.0% |
| !!! | TTATATAATGACAAGTTTTT+TGG | + | chr3_1:28130202-28130221 | Msa0354880:intron | 15.0% |
| !!! | AAATATAAAAAAGCATCAAA+AGG | + | chr3_1:28130466-28130485 | Msa0354880:intron | 15.0% |
| !! | AAAAAAGGAGTAATAATAAA+GGG | + | chr3_1:28130614-28130633 | Msa0354880:intron | 15.0% |
| !! | TATTATAAAAATGACAACTA+AGG | - | chr3_1:28130945-28130964 | None:intergenic | 15.0% |
| !!! | TTATAATAGTTCTTTTTGTT+TGG | + | chr3_1:28130957-28130976 | Msa0354880:intron | 15.0% |
| !! | ATGAAGATAGTAAAGAATAA+TGG | + | chr3_1:28128903-28128922 | Msa0354880:CDS | 20.0% |
| !!! | TGATAGCAATAGTATTTTTA+AGG | + | chr3_1:28129151-28129170 | Msa0354880:CDS | 20.0% |
| !! | CAATATAGCAAAAAATATGA+AGG | + | chr3_1:28129366-28129385 | Msa0354880:intron | 20.0% |
| !! | TCAAAACAAAACTTTATTCA+TGG | - | chr3_1:28129606-28129625 | None:intergenic | 20.0% |
| !!! | ACTTAATGGTTGTTTTAATA+AGG | - | chr3_1:28130525-28130544 | None:intergenic | 20.0% |
| !! | GAAAAAAGGAGTAATAATAA+AGG | + | chr3_1:28130613-28130632 | Msa0354880:intron | 20.0% |
| !! | ATATAATTTGAAAGGTAGAA+GGG | + | chr3_1:28131294-28131313 | Msa0354880:intron | 20.0% |
| ! | CACAAATATTTCAGTAGAAA+TGG | - | chr3_1:28128979-28128998 | None:intergenic | 25.0% |
| ! | ATCTCAACAAAATAGAAAGA+TGG | - | chr3_1:28129008-28129027 | None:intergenic | 25.0% |
| ! | GTTCTATTGTTTATGTCATA+TGG | - | chr3_1:28129197-28129216 | None:intergenic | 25.0% |
| ! | AAATAACAATAGATCTAAGC+AGG | + | chr3_1:28129510-28129529 | Msa0354880:intron | 25.0% |
| ! | TTGACACTTATAAATCTGTT+AGG | + | chr3_1:28129622-28129641 | Msa0354880:intron | 25.0% |
| ! | TGACACTTATAAATCTGTTA+GGG | + | chr3_1:28129623-28129642 | Msa0354880:intron | 25.0% |
| ! | ATTAACCTCATATGTATTAC+TGG | + | chr3_1:28129732-28129751 | Msa0354880:intron | 25.0% |
| ! | TGCTCAACTATATTTATAAG+AGG | + | chr3_1:28129870-28129889 | Msa0354880:intron | 25.0% |
| ! | ATATTTATAAGAGGCTAAGT+AGG | + | chr3_1:28129879-28129898 | Msa0354880:intron | 25.0% |
| ! | TTCAAAAAAGCCCAAAAAAA+CGG | - | chr3_1:28129952-28129971 | None:intergenic | 25.0% |
| ! | CAAATCATGTTGCATAAATA+GGG | - | chr3_1:28130134-28130153 | None:intergenic | 25.0% |
| ! | TCAAATCATGTTGCATAAAT+AGG | - | chr3_1:28130135-28130154 | None:intergenic | 25.0% |
| !!! | TAAAAAAGCATCAAAAGGTT+CGG | + | chr3_1:28130471-28130490 | Msa0354880:intron | 25.0% |
| ! | TTCTTTCTTTCATCACTTAA+TGG | - | chr3_1:28130539-28130558 | None:intergenic | 25.0% |
| ! | ATAACTTAGAAGGAAAAGTT+GGG | + | chr3_1:28130727-28130746 | Msa0354880:intron | 25.0% |
| !! | GAGTTCACACATTTTAAATA+CGG | + | chr3_1:28130999-28131018 | Msa0354880:intron | 25.0% |
| !! | TGTTATGTACTATTGCATTT+TGG | + | chr3_1:28131142-28131161 | Msa0354880:intron | 25.0% |
| ! | GCTACTTGATATAATTTGAA+AGG | + | chr3_1:28131286-28131305 | Msa0354880:intron | 25.0% |
| ! | GATATAATTTGAAAGGTAGA+AGG | + | chr3_1:28131293-28131312 | Msa0354880:intron | 25.0% |
| ATTTCAGTAGAAATGGTAAG+CGG | - | chr3_1:28128972-28128991 | None:intergenic | 30.0% | |
| ! | ATTGAAGGAGCATATAATAC+CGG | + | chr3_1:28129067-28129086 | Msa0354880:CDS | 30.0% |
| ATACTCGCTGAAAATTATGT+TGG | + | chr3_1:28129477-28129496 | Msa0354880:intron | 30.0% | |
| ! | TATTCATGGAGTATCATGAA+AGG | - | chr3_1:28129592-28129611 | None:intergenic | 30.0% |
| AGAGCAACAAAAAATTGGTT+AGG | + | chr3_1:28129648-28129667 | Msa0354880:intron | 30.0% | |
| ATACATATGAGGTTAATCTC+CGG | - | chr3_1:28129729-28129748 | None:intergenic | 30.0% | |
| TGGTTATGCTGATATGTAAT+TGG | - | chr3_1:28129794-28129813 | None:intergenic | 30.0% | |
| !! | TCTCTCCACTTTTATCAAAA+TGG | + | chr3_1:28129845-28129864 | Msa0354880:intron | 30.0% |
| TCAAAAAAGCCCAAAAAAAC+GGG | - | chr3_1:28129951-28129970 | None:intergenic | 30.0% | |
| ATGCAACATGATTTGAAAAG+TGG | + | chr3_1:28130139-28130158 | Msa0354880:intron | 30.0% | |
| ! | GATTAGGGACATAAATGTTT+TGG | - | chr3_1:28130180-28130199 | None:intergenic | 30.0% |
| !!! | TGACAAGTTTTTTGGTTCTT+TGG | + | chr3_1:28130210-28130229 | Msa0354880:intron | 30.0% |
| !!! | GACAAGTTTTTTGGTTCTTT+GGG | + | chr3_1:28130211-28130230 | Msa0354880:intron | 30.0% |
| ACAATTGAATTTGAACACAG+TGG | + | chr3_1:28130237-28130256 | Msa0354880:intron | 30.0% | |
| CAATTGAATTTGAACACAGT+GGG | + | chr3_1:28130238-28130257 | Msa0354880:intron | 30.0% | |
| ! | AACATACCTTTTGCAATAAC+AGG | + | chr3_1:28130296-28130315 | Msa0354880:intron | 30.0% |
| ! | ACATACCTTTTGCAATAACA+GGG | + | chr3_1:28130297-28130316 | Msa0354880:intron | 30.0% |
| ! | ATCTATTTTGTCGTGTCTTT+AGG | - | chr3_1:28130385-28130404 | None:intergenic | 30.0% |
| AAAGACACGACAAAATAGAT+TGG | + | chr3_1:28130385-28130404 | Msa0354880:intron | 30.0% | |
| ! | AAGGTTCGGTTAAGAAATAT+TGG | + | chr3_1:28130485-28130504 | Msa0354880:intron | 30.0% |
| ! | GAAGTTTTTCCATAAGTAGA+AGG | + | chr3_1:28130646-28130665 | Msa0354880:intron | 30.0% |
| ! | TTTTCCATAAGTAGAAGGAA+AGG | + | chr3_1:28130651-28130670 | Msa0354880:intron | 30.0% |
| GATAACTTAGAAGGAAAAGT+TGG | + | chr3_1:28130726-28130745 | Msa0354880:intron | 30.0% | |
| TAACTTAGAAGGAAAAGTTG+GGG | + | chr3_1:28130728-28130747 | Msa0354880:intron | 30.0% | |
| ! | ACATTTTAAATACGGAGAAG+TGG | + | chr3_1:28131007-28131026 | Msa0354880:intron | 30.0% |
| AAATAGAAAACGTCAACCTT+CGG | - | chr3_1:28131439-28131458 | None:intergenic | 30.0% | |
| TTCTATTTCGTTAAATCAGC+TGG | + | chr3_1:28131451-28131470 | Msa0354880:CDS | 30.0% | |
| TCTATTTCGTTAAATCAGCT+GGG | + | chr3_1:28131452-28131471 | Msa0354880:CDS | 30.0% | |
| GTATCAATTGTACTATGTAC+TGG | + | chr3_1:28131529-28131548 | Msa0354880:CDS | 30.0% | |
| !! | TTATCAGTCTCATTTTTCGA+TGG | - | chr3_1:28131557-28131576 | None:intergenic | 30.0% |
| GACAGCAAGATAGTAGAAAA+AGG | + | chr3_1:28128946-28128965 | Msa0354880:CDS | 35.0% | |
| !! | GTTGAGATAAAGAAGTACCA+TGG | + | chr3_1:28129020-28129039 | Msa0354880:CDS | 35.0% |
| GGAATACCAGAAGATATTGA+AGG | + | chr3_1:28129052-28129071 | Msa0354880:CDS | 35.0% | |
| TATGCTCCTTCAATATCTTC+TGG | - | chr3_1:28129061-28129080 | None:intergenic | 35.0% | |
| TCAAAGACATTGTCTGGATT+TGG | + | chr3_1:28129093-28129112 | Msa0354880:CDS | 35.0% | |
| TATGGTCACAATTACAGTTG+AGG | - | chr3_1:28129179-28129198 | None:intergenic | 35.0% | |
| !!! | TTTTGATGATGTCATTCGCA+AGG | - | chr3_1:28129225-28129244 | None:intergenic | 35.0% |
| ATAGTCACTAAACCATGTCA+AGG | + | chr3_1:28129266-28129285 | Msa0354880:intron | 35.0% | |
| TAGTCACTAAACCATGTCAA+GGG | + | chr3_1:28129267-28129286 | Msa0354880:intron | 35.0% | |
| TACATGAAAAGATGAACGAC+CGG | + | chr3_1:28129707-28129726 | Msa0354880:intron | 35.0% | |
| ATATCAGCATAACCAAAGAG+AGG | + | chr3_1:28129799-28129818 | Msa0354880:intron | 35.0% | |
| !!! | TTTAATTGGGCCCGTTTTTT+TGG | + | chr3_1:28129938-28129957 | Msa0354880:intron | 35.0% |
| !!! | TTAATTGGGCCCGTTTTTTT+GGG | + | chr3_1:28129939-28129958 | Msa0354880:intron | 35.0% |
| ! | ATAGATTGGTAGCTGCATAA+AGG | + | chr3_1:28130399-28130418 | Msa0354880:intron | 35.0% |
| AGAAATATTGGAGCTTGAAG+AGG | + | chr3_1:28130497-28130516 | Msa0354880:intron | 35.0% | |
| GAACAAATAAGAGGAGAAAG+AGG | + | chr3_1:28130591-28130610 | Msa0354880:intron | 35.0% | |
| AAGAGGAGAAAGAGGAAAAA+AGG | + | chr3_1:28130599-28130618 | Msa0354880:intron | 35.0% | |
| TTCAACACTTGACAAAGTGA+TGG | - | chr3_1:28130703-28130722 | None:intergenic | 35.0% | |
| GTTGAAGAGGATAACTTAGA+AGG | + | chr3_1:28130717-28130736 | Msa0354880:intron | 35.0% | |
| ATCTACCTTAACTGCTCAAT+TGG | + | chr3_1:28130884-28130903 | Msa0354880:intron | 35.0% | |
| CACTTATAAGAGTAGAAACC+TGG | + | chr3_1:28131117-28131136 | Msa0354880:intron | 35.0% | |
| GCAATAGTACATAACATTCC+AGG | - | chr3_1:28131138-28131157 | None:intergenic | 35.0% | |
| ATCACTTGAACCAAATCAAC+AGG | + | chr3_1:28131254-28131273 | Msa0354880:intron | 35.0% | |
| TCACTTGAACCAAATCAACA+GGG | + | chr3_1:28131255-28131274 | Msa0354880:intron | 35.0% | |
| TTCTGAGTGTAAATCAAGGA+GGG | + | chr3_1:28131361-28131380 | Msa0354880:CDS | 35.0% | |
| AAGTCTGAACAATCTCTTGT+AGG | - | chr3_1:28131399-28131418 | None:intergenic | 35.0% | |
| AATACAATGCTTCATCAGGA+GGG | + | chr3_1:28131490-28131509 | Msa0354880:CDS | 35.0% | |
| !! | CAAAGAATCATCTTTTTGGC+AGG | - | chr3_1:28131590-28131609 | None:intergenic | 35.0% |
| CTGCCAAAAAGATGATTCTT+TGG | + | chr3_1:28131588-28131607 | Msa0354880:CDS | 35.0% | |
| ! | CGACCAAAGAATCATCTTTT+TGG | - | chr3_1:28131594-28131613 | None:intergenic | 35.0% |
| TAATGGAGAGATGCTAAAGC+TGG | + | chr3_1:28128920-28128939 | Msa0354880:CDS | 40.0% | |
| ATTGCTTCAATCCCTTGACA+TGG | - | chr3_1:28129281-28129300 | None:intergenic | 40.0% | |
| TCTAAGCAGGTCATCATAGA+AGG | + | chr3_1:28129523-28129542 | Msa0354880:intron | 40.0% | |
| GGGAGAGAGCAACAAAAAAT+TGG | + | chr3_1:28129643-28129662 | Msa0354880:intron | 40.0% | |
| CCAGACCAGTAATACATATG+AGG | - | chr3_1:28129740-28129759 | None:intergenic | 40.0% | |
| CCTCATATGTATTACTGGTC+TGG | + | chr3_1:28129737-28129756 | Msa0354880:intron | 40.0% | |
| CTGGTTAGAATGAAGTAGCA+CGG | + | chr3_1:28129756-28129775 | Msa0354880:intron | 40.0% | |
| !! | GCACGCCATTTTGATAAAAG+TGG | - | chr3_1:28129853-28129872 | None:intergenic | 40.0% |
| AGAAGCCCTGTTATTGCAAA+AGG | - | chr3_1:28130305-28130324 | None:intergenic | 40.0% | |
| GGTCTATTAATGGTTGGAGT+TGG | - | chr3_1:28130355-28130374 | None:intergenic | 40.0% | |
| TGTGACGGTCTATTAATGGT+TGG | - | chr3_1:28130361-28130380 | None:intergenic | 40.0% | |
| AGGATGTGACGGTCTATTAA+TGG | - | chr3_1:28130365-28130384 | None:intergenic | 40.0% | |
| CTGCATAAAGGACAGAAGTA+TGG | + | chr3_1:28130411-28130430 | Msa0354880:intron | 40.0% | |
| GAAAGAGAATAGCAAGACAG+AGG | + | chr3_1:28130567-28130586 | Msa0354880:intron | 40.0% | |
| GACAGAGGAGAACAAATAAG+AGG | + | chr3_1:28130582-28130601 | Msa0354880:intron | 40.0% | |
| TCAGCCTTTCCTTCTACTTA+TGG | - | chr3_1:28130658-28130677 | None:intergenic | 40.0% | |
| !! | CACTTTGTCAAGTGTTGAAG+AGG | + | chr3_1:28130704-28130723 | Msa0354880:intron | 40.0% |
| ACTCTCCAATTGAGCAGTTA+AGG | - | chr3_1:28130892-28130911 | None:intergenic | 40.0% | |
| ATGTGTGAACTCCAATCACT+AGG | - | chr3_1:28130991-28131010 | None:intergenic | 40.0% | |
| ! | CAATTCAGTCCCTGTTGATT+TGG | - | chr3_1:28131267-28131286 | None:intergenic | 40.0% |
| TAGAAGGGACTGAAACTTCT+TGG | + | chr3_1:28131309-28131328 | Msa0354880:CDS | 40.0% | |
| GTGCTTCTGAGTGTAAATCA+AGG | + | chr3_1:28131357-28131376 | Msa0354880:CDS | 40.0% | |
| CTTCTGAGTGTAAATCAAGG+AGG | + | chr3_1:28131360-28131379 | Msa0354880:CDS | 40.0% | |
| CATTGTATTGGAGAATCACG+AGG | - | chr3_1:28131479-28131498 | None:intergenic | 40.0% | |
| CTCCAATACAATGCTTCATC+AGG | + | chr3_1:28131486-28131505 | Msa0354880:CDS | 40.0% | |
| !! | CTCCTGATGAAGCATTGTAT+TGG | - | chr3_1:28131491-28131510 | None:intergenic | 40.0% |
| CAATACAATGCTTCATCAGG+AGG | + | chr3_1:28131489-28131508 | Msa0354880:CDS | 40.0% | |
| ! | GAAGTACCATGGAGATGCAT+CGG | + | chr3_1:28129031-28129050 | Msa0354880:CDS | 45.0% |
| ! | CAGACAATGTCTTTGAGAGC+CGG | - | chr3_1:28129089-28129108 | None:intergenic | 45.0% |
| CCACTGTACTGGGTTCATTA+AGG | - | chr3_1:28130077-28130096 | None:intergenic | 45.0% | |
| CCTTAATGAACCCAGTACAG+TGG | + | chr3_1:28130074-28130093 | Msa0354880:intron | 45.0% | |
| TAATGAACCCAGTACAGTGG+TGG | + | chr3_1:28130077-28130096 | Msa0354880:intron | 45.0% | |
| ATGCAACCACTAATGCACAG+AGG | + | chr3_1:28130270-28130289 | Msa0354880:intron | 45.0% | |
| GTTTCACCTCTGTGCATTAG+TGG | - | chr3_1:28130279-28130298 | None:intergenic | 45.0% | |
| TGCAATAACAGGGCTTCTTG+AGG | + | chr3_1:28130307-28130326 | Msa0354880:intron | 45.0% | |
| !! | GTCGTGTCTTTAGGATGTGA+CGG | - | chr3_1:28130376-28130395 | None:intergenic | 45.0% |
| CTTAGAAGGAAAAGTTGGGG+AGG | + | chr3_1:28130731-28130750 | Msa0354880:intron | 45.0% | |
| TGGTCAAGTAGCCTAGTGAT+TGG | + | chr3_1:28130977-28130996 | Msa0354880:intron | 45.0% | |
| GAGTACTAGTTACAGAACCC+TGG | - | chr3_1:28131038-28131057 | None:intergenic | 45.0% | |
| !! | ATATTATATAAATCTTTAAT+TGG | + | chr3_1:28129924-28129943 | Msa0354880:intron | 5.0% |
| !! | TATTATATAAATCTTTAATT+GGG | + | chr3_1:28129925-28129944 | Msa0354880:intron | 5.0% |
| !! | ATATATATATATATAAAACA+GGG | - | chr3_1:28131066-28131085 | None:intergenic | 5.0% |
| !! | TATATATATATATATAAAAC+AGG | - | chr3_1:28131067-28131086 | None:intergenic | 5.0% |
| GGTATTCCGATGCATCTCCA+TGG | - | chr3_1:28129040-28129059 | None:intergenic | 50.0% | |
| CGGCTCTCAAAGACATTGTC+TGG | + | chr3_1:28129087-28129106 | Msa0354880:CDS | 50.0% | |
| TGCTTAGGCGTTCCTCTCTT+TGG | - | chr3_1:28129814-28129833 | None:intergenic | 50.0% | |
| ATAGGGTAATCCCCAGTAGC+AGG | - | chr3_1:28130117-28130136 | None:intergenic | 50.0% | |
| AGGGCTTCTTGAGGACAAGT+AGG | + | chr3_1:28130316-28130335 | Msa0354880:intron | 50.0% | |
| TACGGAGAAGTGGAAAGTCC+AGG | + | chr3_1:28131017-28131036 | Msa0354880:intron | 50.0% | |
| ACGGAGAAGTGGAAAGTCCA+GGG | + | chr3_1:28131018-28131037 | Msa0354880:intron | 50.0% | |
| AGAGAGGAACGCCTAAGCAG+CGG | + | chr3_1:28129815-28129834 | Msa0354880:intron | 55.0% | |
| GAGAAACAACGCCGCTGCTT+AGG | - | chr3_1:28129829-28129848 | None:intergenic | 55.0% | |
| TCGAGGTCCACCACTGTACT+GGG | - | chr3_1:28130087-28130106 | None:intergenic | 55.0% | |
| TCGAGGAGTTGCCTGCTACT+GGG | + | chr3_1:28130103-28130122 | Msa0354880:intron | 55.0% | |
| GTCAACCTTCGGCACTCTTC+GGG | - | chr3_1:28131428-28131447 | None:intergenic | 55.0% | |
| CGTCAACCTTCGGCACTCTT+CGG | - | chr3_1:28131429-28131448 | None:intergenic | 55.0% | |
| CTCGAGGTCCACCACTGTAC+TGG | - | chr3_1:28130088-28130107 | None:intergenic | 60.0% | |
| !! | CAGTACAGTGGTGGACCTCG+AGG | + | chr3_1:28130086-28130105 | Msa0354880:intron | 60.0% |
| CAGTAGCAGGCAACTCCTCG+AGG | - | chr3_1:28130104-28130123 | None:intergenic | 60.0% | |
| CTCGAGGAGTTGCCTGCTAC+TGG | + | chr3_1:28130102-28130121 | Msa0354880:intron | 60.0% | |
| CGAGGAGTTGCCTGCTACTG+GGG | + | chr3_1:28130104-28130123 | Msa0354880:intron | 60.0% | |
| !! | AGACTCCCGAAGAGTGCCGA+AGG | + | chr3_1:28131420-28131439 | Msa0354880:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 28128876 | 28131640 | 28128876 | ID=Msa0354880;Name=Msa0354880 |
| chr3_1 | mRNA | 28128876 | 28131640 | 28128876 | ID=Msa0354880-mRNA-1;Parent=Msa0354880;Name=Msa0354880-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|2|0|209 |
| chr3_1 | exon | 28128876 | 28129172 | 28128876 | ID=Msa0354880-mRNA-1:exon:5901;Parent=Msa0354880-mRNA-1 |
| chr3_1 | exon | 28131308 | 28131640 | 28131308 | ID=Msa0354880-mRNA-1:exon:5902;Parent=Msa0354880-mRNA-1 |
| chr3_1 | CDS | 28128876 | 28129172 | 28128876 | ID=Msa0354880-mRNA-1:cds;Parent=Msa0354880-mRNA-1 |
| chr3_1 | CDS | 28131308 | 28131640 | 28131308 | ID=Msa0354880-mRNA-1:cds;Parent=Msa0354880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
