Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356050 | XP_013461367.1 | 91.228 | 57 | 5 | 0 | 3 | 59 | 8 | 64 | 1.03e-28 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356050 | sp|Q9FX36|MYB54_ARATH | 76.471 | 51 | 12 | 0 | 9 | 59 | 4 | 54 | 1.62e-22 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356050 | A0A072V0T7 | 91.228 | 57 | 5 | 0 | 3 | 59 | 8 | 64 | 4.93e-29 | 113 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0356050 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356050 | MtrunA17_Chr3g0125801 | 91.228 | 57 | 5 | 0 | 3 | 59 | 8 | 64 | 9.50e-33 | 113 |
| Msa0356050 | MtrunA17_Chr7g0254261 | 68.519 | 54 | 17 | 0 | 6 | 59 | 84 | 137 | 6.16e-23 | 88.6 |
| Msa0356050 | MtrunA17_Chr4g0042501 | 72.222 | 54 | 15 | 0 | 6 | 59 | 100 | 153 | 1.67e-22 | 87.8 |
| Msa0356050 | MtrunA17_Chr5g0417621 | 70.370 | 54 | 16 | 0 | 6 | 59 | 129 | 182 | 3.63e-22 | 87.0 |
| Msa0356050 | MtrunA17_Chr6g0480581 | 72.549 | 51 | 14 | 0 | 9 | 59 | 2 | 52 | 3.81e-22 | 84.7 |
| Msa0356050 | MtrunA17_Chr6g0460671 | 60.000 | 55 | 22 | 0 | 5 | 59 | 93 | 147 | 7.08e-20 | 80.1 |
| Msa0356050 | MtrunA17_Chr6g0460661 | 64.583 | 48 | 17 | 0 | 12 | 59 | 17 | 64 | 1.06e-19 | 76.6 |
| Msa0356050 | MtrunA17_Chr4g0008551 | 58.333 | 48 | 20 | 0 | 12 | 59 | 39 | 86 | 6.64e-14 | 63.5 |
| Msa0356050 | MtrunA17_Chr5g0401731 | 54.167 | 48 | 22 | 0 | 12 | 59 | 16 | 63 | 2.51e-13 | 62.0 |
| Msa0356050 | MtrunA17_Chr4g0053431 | 54.167 | 48 | 22 | 0 | 12 | 59 | 6 | 53 | 3.46e-13 | 61.2 |
| Msa0356050 | MtrunA17_Chr6g0454921 | 54.167 | 48 | 22 | 0 | 12 | 59 | 16 | 63 | 4.18e-13 | 60.5 |
| Msa0356050 | MtrunA17_Chr3g0104501 | 53.846 | 52 | 24 | 0 | 8 | 59 | 130 | 181 | 5.32e-13 | 60.1 |
| Msa0356050 | MtrunA17_Chr5g0429661 | 56.250 | 48 | 21 | 0 | 12 | 59 | 123 | 170 | 9.59e-13 | 60.5 |
| Msa0356050 | MtrunA17_Chr5g0437321 | 52.083 | 48 | 23 | 0 | 12 | 59 | 20 | 67 | 2.12e-12 | 59.3 |
| Msa0356050 | MtrunA17_Chr3g0133601 | 54.167 | 48 | 22 | 0 | 12 | 59 | 38 | 85 | 5.11e-12 | 57.8 |
| Msa0356050 | MtrunA17_Chr4g0058991 | 54.167 | 48 | 22 | 0 | 12 | 59 | 210 | 257 | 3.54e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356050 | AT1G73410.2 | 76.471 | 51 | 12 | 0 | 9 | 59 | 4 | 54 | 6.99e-24 | 88.6 |
| Msa0356050 | AT1G73410.1 | 76.471 | 51 | 12 | 0 | 9 | 59 | 4 | 54 | 1.65e-23 | 88.6 |
| Msa0356050 | AT1G17950.1 | 74.510 | 51 | 13 | 0 | 9 | 59 | 3 | 53 | 2.99e-23 | 88.2 |
| Msa0356050 | AT1G69560.1 | 75.000 | 52 | 13 | 0 | 8 | 59 | 104 | 155 | 5.08e-22 | 86.3 |
| Msa0356050 | AT1G69560.2 | 75.000 | 52 | 13 | 0 | 8 | 59 | 120 | 171 | 6.11e-22 | 86.3 |
| Msa0356050 | AT1G26780.1 | 79.167 | 48 | 10 | 0 | 12 | 59 | 99 | 146 | 8.01e-22 | 84.7 |
| Msa0356050 | AT1G26780.2 | 79.167 | 48 | 10 | 0 | 12 | 59 | 99 | 146 | 2.06e-21 | 84.7 |
| Msa0356050 | AT4G33450.1 | 69.231 | 52 | 16 | 0 | 8 | 59 | 16 | 67 | 2.48e-21 | 83.2 |
| Msa0356050 | AT5G17800.1 | 65.455 | 55 | 19 | 0 | 5 | 59 | 87 | 141 | 4.98e-21 | 83.6 |
| Msa0356050 | AT3G29020.1 | 62.963 | 54 | 20 | 0 | 6 | 59 | 60 | 113 | 7.82e-21 | 81.6 |
| Msa0356050 | AT3G29020.2 | 62.963 | 54 | 20 | 0 | 6 | 59 | 62 | 115 | 2.88e-20 | 81.3 |
| Msa0356050 | AT5G67300.1 | 54.167 | 48 | 22 | 0 | 12 | 59 | 7 | 54 | 8.35e-13 | 60.8 |
| Msa0356050 | AT5G39700.1 | 48.276 | 58 | 30 | 0 | 2 | 59 | 47 | 104 | 1.03e-12 | 59.3 |
| Msa0356050 | AT3G50060.1 | 52.083 | 48 | 23 | 0 | 12 | 59 | 7 | 54 | 3.51e-12 | 58.9 |
| Msa0356050 | AT5G40360.1 | 52.083 | 48 | 23 | 0 | 12 | 59 | 159 | 206 | 7.45e-12 | 58.2 |
| Msa0356050 | AT3G27785.1 | 52.083 | 48 | 23 | 0 | 12 | 59 | 190 | 237 | 1.07e-11 | 57.8 |
| Msa0356050 | AT2G39880.1 | 52.830 | 53 | 25 | 0 | 7 | 59 | 46 | 98 | 1.71e-11 | 57.4 |
| Msa0356050 | AT5G58850.1 | 48.148 | 54 | 28 | 0 | 6 | 59 | 100 | 153 | 2.48e-11 | 57.0 |
| Msa0356050 | AT3G09230.1 | 52.083 | 48 | 23 | 0 | 12 | 59 | 56 | 103 | 2.64e-11 | 56.6 |
| Msa0356050 | AT5G11050.1 | 49.057 | 53 | 27 | 0 | 7 | 59 | 101 | 153 | 2.68e-11 | 56.6 |
| Msa0356050 | AT2G23290.1 | 50.000 | 48 | 24 | 0 | 12 | 59 | 14 | 61 | 3.56e-11 | 56.2 |
| Msa0356050 | AT4G37260.1 | 50.000 | 48 | 24 | 0 | 12 | 59 | 14 | 61 | 4.95e-11 | 55.8 |
| Msa0356050 | AT3G09370.3 | 52.083 | 48 | 23 | 0 | 12 | 59 | 144 | 191 | 5.91e-11 | 55.8 |
| Msa0356050 | AT3G09370.1 | 52.083 | 48 | 23 | 0 | 12 | 59 | 131 | 178 | 6.33e-11 | 55.8 |
| Msa0356050 | AT3G09370.2 | 52.083 | 48 | 23 | 0 | 12 | 59 | 136 | 183 | 6.33e-11 | 55.8 |
| Msa0356050 | AT5G11510.2 | 50.000 | 48 | 24 | 0 | 12 | 59 | 82 | 129 | 8.91e-11 | 55.5 |
| Msa0356050 | AT5G11510.3 | 50.000 | 48 | 24 | 0 | 12 | 59 | 82 | 129 | 9.02e-11 | 55.5 |
| Msa0356050 | AT5G11510.1 | 50.000 | 48 | 24 | 0 | 12 | 59 | 82 | 129 | 9.02e-11 | 55.5 |
| Msa0356050 | AT5G11510.4 | 50.000 | 48 | 24 | 0 | 12 | 59 | 82 | 129 | 9.02e-11 | 55.5 |
| Msa0356050 | AT5G11510.5 | 50.000 | 48 | 24 | 0 | 12 | 59 | 82 | 129 | 9.17e-11 | 55.5 |
Find 34 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCATTGAAATTTCTTATT+TGG | 0.138946 | 3_1:-31928079 | None:intergenic |
| ACAACATTATCAGTTCTTTC+AGG | 0.182418 | 3_1:-31927850 | None:intergenic |
| AACAATATGGTGCTCAAAAT+TGG | 0.232647 | 3_1:+31927428 | Msa0356050:CDS |
| TTCCCTTACACGACGAGAAT+TGG | 0.299194 | 3_1:+31927977 | Msa0356050:three_prime_UTR |
| CCTCAACTTGTTGAACAATA+TGG | 0.300197 | 3_1:+31927415 | Msa0356050:CDS |
| AAAGGTCTCTTGTTAATTCA+TGG | 0.340427 | 3_1:-31927748 | None:intergenic |
| CAAGAGGCAAGAGAACTTAA+AGG | 0.364207 | 3_1:-31928031 | None:intergenic |
| ACTTCTCTTGCCACATAACT+TGG | 0.368979 | 3_1:-31927920 | None:intergenic |
| CTTTAAGTTCTCTTGCCTCT+TGG | 0.373629 | 3_1:+31928032 | Msa0356050:three_prime_UTR |
| ATCGAATTCACATAAACAAA+TGG | 0.389392 | 3_1:+31927806 | Msa0356050:three_prime_UTR |
| GAATCATAGGCATGTTATAA+TGG | 0.391053 | 3_1:+31927876 | Msa0356050:three_prime_UTR |
| TATCCAATTCTCGTCGTGTA+AGG | 0.396192 | 3_1:-31927980 | None:intergenic |
| TCTTCTTCCTCTTCTGTGAA+AGG | 0.428456 | 3_1:-31927766 | None:intergenic |
| CAACATTATCAGTTCTTTCA+GGG | 0.435680 | 3_1:-31927849 | None:intergenic |
| ATAATGTTGTCAAGAATCAT+AGG | 0.447489 | 3_1:+31927863 | Msa0356050:three_prime_UTR |
| TAGGGAAACGTTGTAGGTTG+AGG | 0.463106 | 3_1:+31927707 | Msa0356050:intron |
| AACTTGTAGGGAAACGTTGT+AGG | 0.477303 | 3_1:+31927701 | Msa0356050:intron |
| TCGAATTCACATAAACAAAT+GGG | 0.494256 | 3_1:+31927807 | Msa0356050:three_prime_UTR |
| CAAGAGACCTTTCACAGAAG+AGG | 0.503737 | 3_1:+31927759 | Msa0356050:three_prime_UTR |
| AGAGTTGTCCATGTGGTCAC+TGG | 0.512701 | 3_1:+31927368 | Msa0356050:CDS |
| ACGAGAATTGGATATGAGAA+TGG | 0.523637 | 3_1:+31927989 | Msa0356050:three_prime_UTR |
| TATAATGGCTACAAAACAAA+GGG | 0.531749 | 3_1:+31927891 | Msa0356050:three_prime_UTR |
| GTGACCACATGGACAACTCT+TGG | 0.543251 | 3_1:-31927365 | None:intergenic |
| GTGTAAGGGAAATTAAGTAT+AGG | 0.547906 | 3_1:-31927965 | None:intergenic |
| ATCCAATTCTCGTCGTGTAA+GGG | 0.553745 | 3_1:-31927979 | None:intergenic |
| CCATATTGTTCAACAAGTTG+AGG | 0.564383 | 3_1:-31927415 | None:intergenic |
| AGGGAACAATCCAAGTTATG+TGG | 0.586173 | 3_1:+31927910 | Msa0356050:three_prime_UTR |
| TTATAATGGCTACAAAACAA+AGG | 0.590289 | 3_1:+31927890 | Msa0356050:three_prime_UTR |
| GGAAACGTTGTAGGTTGAGG+TGG | 0.592608 | 3_1:+31927710 | Msa0356050:CDS |
| GCGGGTCGCCAGTGACCACA+TGG | 0.607822 | 3_1:-31927376 | None:intergenic |
| ACTTCCATAATCCATATGGA+GGG | 0.628080 | 3_1:+31927319 | None:intergenic |
| CACAAAAGTAGAATTCCAAG+AGG | 0.669761 | 3_1:-31928047 | None:intergenic |
| GGAAGAAGAGAGACTACTTG+CGG | 0.685866 | 3_1:+31927780 | Msa0356050:three_prime_UTR |
| GATACCAAGAGTTGTCCATG+TGG | 0.733953 | 3_1:+31927361 | Msa0356050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATTTGAAAATTAAATA+AGG | - | chr3_1:31927542-31927561 | None:intergenic | 10.0% |
| !! | ATGAATTTGAAAATTAAATA+AGG | - | chr3_1:31927542-31927561 | None:intergenic | 10.0% |
| !! | AATTTGAAAATTAAATAAGG+AGG | - | chr3_1:31927539-31927558 | None:intergenic | 15.0% |
| !! | AATTTGAAAATTAAATAAGG+AGG | - | chr3_1:31927539-31927558 | None:intergenic | 15.0% |
| !! | AATATTACATAATACATACC+TGG | - | chr3_1:31927484-31927503 | None:intergenic | 20.0% |
| !!! | ATTTTTTCCTTTTAACTTGT+AGG | + | chr3_1:31927688-31927707 | Msa0356050:intron | 20.0% |
| !!! | TTTTTTCCTTTTAACTTGTA+GGG | + | chr3_1:31927689-31927708 | Msa0356050:intron | 20.0% |
| !! | AATATTACATAATACATACC+TGG | - | chr3_1:31927484-31927503 | None:intergenic | 20.0% |
| !!! | ATTTTTTCCTTTTAACTTGT+AGG | + | chr3_1:31927688-31927707 | Msa0356050:intron | 20.0% |
| !!! | TTTTTTCCTTTTAACTTGTA+GGG | + | chr3_1:31927689-31927708 | Msa0356050:intron | 20.0% |
| ! | ATCGAATTCACATAAACAAA+TGG | + | chr3_1:31927806-31927825 | Msa0356050:three_prime_UTR | 25.0% |
| ! | TCGAATTCACATAAACAAAT+GGG | + | chr3_1:31927807-31927826 | Msa0356050:three_prime_UTR | 25.0% |
| ! | ATAATGTTGTCAAGAATCAT+AGG | + | chr3_1:31927863-31927882 | Msa0356050:three_prime_UTR | 25.0% |
| ! | TTATAATGGCTACAAAACAA+AGG | + | chr3_1:31927890-31927909 | Msa0356050:three_prime_UTR | 25.0% |
| ! | TATAATGGCTACAAAACAAA+GGG | + | chr3_1:31927891-31927910 | Msa0356050:three_prime_UTR | 25.0% |
| ! | ATCGAATTCACATAAACAAA+TGG | + | chr3_1:31927806-31927825 | Msa0356050:three_prime_UTR | 25.0% |
| ! | TCGAATTCACATAAACAAAT+GGG | + | chr3_1:31927807-31927826 | Msa0356050:three_prime_UTR | 25.0% |
| ! | ATAATGTTGTCAAGAATCAT+AGG | + | chr3_1:31927863-31927882 | Msa0356050:three_prime_UTR | 25.0% |
| ! | TTATAATGGCTACAAAACAA+AGG | + | chr3_1:31927890-31927909 | Msa0356050:three_prime_UTR | 25.0% |
| ! | TATAATGGCTACAAAACAAA+GGG | + | chr3_1:31927891-31927910 | Msa0356050:three_prime_UTR | 25.0% |
| AACAATATGGTGCTCAAAAT+TGG | + | chr3_1:31927428-31927447 | Msa0356050:CDS | 30.0% | |
| AAAGGTCTCTTGTTAATTCA+TGG | - | chr3_1:31927751-31927770 | None:intergenic | 30.0% | |
| CAACATTATCAGTTCTTTCA+GGG | - | chr3_1:31927852-31927871 | None:intergenic | 30.0% | |
| ACAACATTATCAGTTCTTTC+AGG | - | chr3_1:31927853-31927872 | None:intergenic | 30.0% | |
| GAATCATAGGCATGTTATAA+TGG | + | chr3_1:31927876-31927895 | Msa0356050:three_prime_UTR | 30.0% | |
| GTGTAAGGGAAATTAAGTAT+AGG | - | chr3_1:31927968-31927987 | None:intergenic | 30.0% | |
| AACAATATGGTGCTCAAAAT+TGG | + | chr3_1:31927428-31927447 | Msa0356050:CDS | 30.0% | |
| AAAGGTCTCTTGTTAATTCA+TGG | - | chr3_1:31927751-31927770 | None:intergenic | 30.0% | |
| CAACATTATCAGTTCTTTCA+GGG | - | chr3_1:31927852-31927871 | None:intergenic | 30.0% | |
| ACAACATTATCAGTTCTTTC+AGG | - | chr3_1:31927853-31927872 | None:intergenic | 30.0% | |
| GAATCATAGGCATGTTATAA+TGG | + | chr3_1:31927876-31927895 | Msa0356050:three_prime_UTR | 30.0% | |
| GTGTAAGGGAAATTAAGTAT+AGG | - | chr3_1:31927968-31927987 | None:intergenic | 30.0% | |
| ! | AGGAAGTTTTTCATCTTCAG+CGG | - | chr3_1:31927398-31927417 | None:intergenic | 35.0% |
| CCATATTGTTCAACAAGTTG+AGG | - | chr3_1:31927418-31927437 | None:intergenic | 35.0% | |
| !! | CCTCAACTTGTTGAACAATA+TGG | + | chr3_1:31927415-31927434 | Msa0356050:CDS | 35.0% |
| TCAACTGCTGAAAAACTTCA+AGG | + | chr3_1:31927454-31927473 | Msa0356050:CDS | 35.0% | |
| ACGTTTCCCTACAAGTTAAA+AGG | - | chr3_1:31927698-31927717 | None:intergenic | 35.0% | |
| ACGAGAATTGGATATGAGAA+TGG | + | chr3_1:31927989-31928008 | Msa0356050:three_prime_UTR | 35.0% | |
| CACAAAAGTAGAATTCCAAG+AGG | - | chr3_1:31928050-31928069 | None:intergenic | 35.0% | |
| ! | AGGAAGTTTTTCATCTTCAG+CGG | - | chr3_1:31927398-31927417 | None:intergenic | 35.0% |
| CCATATTGTTCAACAAGTTG+AGG | - | chr3_1:31927418-31927437 | None:intergenic | 35.0% | |
| !! | CCTCAACTTGTTGAACAATA+TGG | + | chr3_1:31927415-31927434 | Msa0356050:CDS | 35.0% |
| TCAACTGCTGAAAAACTTCA+AGG | + | chr3_1:31927454-31927473 | Msa0356050:CDS | 35.0% | |
| ACGTTTCCCTACAAGTTAAA+AGG | - | chr3_1:31927698-31927717 | None:intergenic | 35.0% | |
| ACGAGAATTGGATATGAGAA+TGG | + | chr3_1:31927989-31928008 | Msa0356050:three_prime_UTR | 35.0% | |
| CACAAAAGTAGAATTCCAAG+AGG | - | chr3_1:31928050-31928069 | None:intergenic | 35.0% | |
| ! | GGAAGTTTTTCATCTTCAGC+GGG | - | chr3_1:31927397-31927416 | None:intergenic | 40.0% |
| GAAAAACTTCAAGGAAGACC+AGG | + | chr3_1:31927463-31927482 | Msa0356050:CDS | 40.0% | |
| AACTTGTAGGGAAACGTTGT+AGG | + | chr3_1:31927701-31927720 | Msa0356050:intron | 40.0% | |
| TCTTCTTCCTCTTCTGTGAA+AGG | - | chr3_1:31927769-31927788 | None:intergenic | 40.0% | |
| AGGGAACAATCCAAGTTATG+TGG | + | chr3_1:31927910-31927929 | Msa0356050:three_prime_UTR | 40.0% | |
| ACTTCTCTTGCCACATAACT+TGG | - | chr3_1:31927923-31927942 | None:intergenic | 40.0% | |
| ATCCAATTCTCGTCGTGTAA+GGG | - | chr3_1:31927982-31928001 | None:intergenic | 40.0% | |
| TATCCAATTCTCGTCGTGTA+AGG | - | chr3_1:31927983-31928002 | None:intergenic | 40.0% | |
| CAAGAGGCAAGAGAACTTAA+AGG | - | chr3_1:31928034-31928053 | None:intergenic | 40.0% | |
| ! | CTTTAAGTTCTCTTGCCTCT+TGG | + | chr3_1:31928032-31928051 | Msa0356050:three_prime_UTR | 40.0% |
| ! | GGAAGTTTTTCATCTTCAGC+GGG | - | chr3_1:31927397-31927416 | None:intergenic | 40.0% |
| GAAAAACTTCAAGGAAGACC+AGG | + | chr3_1:31927463-31927482 | Msa0356050:CDS | 40.0% | |
| AACTTGTAGGGAAACGTTGT+AGG | + | chr3_1:31927701-31927720 | Msa0356050:intron | 40.0% | |
| TCTTCTTCCTCTTCTGTGAA+AGG | - | chr3_1:31927769-31927788 | None:intergenic | 40.0% | |
| AGGGAACAATCCAAGTTATG+TGG | + | chr3_1:31927910-31927929 | Msa0356050:three_prime_UTR | 40.0% | |
| ACTTCTCTTGCCACATAACT+TGG | - | chr3_1:31927923-31927942 | None:intergenic | 40.0% | |
| ATCCAATTCTCGTCGTGTAA+GGG | - | chr3_1:31927982-31928001 | None:intergenic | 40.0% | |
| TATCCAATTCTCGTCGTGTA+AGG | - | chr3_1:31927983-31928002 | None:intergenic | 40.0% | |
| CAAGAGGCAAGAGAACTTAA+AGG | - | chr3_1:31928034-31928053 | None:intergenic | 40.0% | |
| ! | CTTTAAGTTCTCTTGCCTCT+TGG | + | chr3_1:31928032-31928051 | Msa0356050:three_prime_UTR | 40.0% |
| GATACCAAGAGTTGTCCATG+TGG | + | chr3_1:31927361-31927380 | Msa0356050:CDS | 45.0% | |
| TAGGGAAACGTTGTAGGTTG+AGG | + | chr3_1:31927707-31927726 | Msa0356050:intron | 45.0% | |
| CAAGAGACCTTTCACAGAAG+AGG | + | chr3_1:31927759-31927778 | Msa0356050:three_prime_UTR | 45.0% | |
| GGAAGAAGAGAGACTACTTG+CGG | + | chr3_1:31927780-31927799 | Msa0356050:three_prime_UTR | 45.0% | |
| TTCCCTTACACGACGAGAAT+TGG | + | chr3_1:31927977-31927996 | Msa0356050:three_prime_UTR | 45.0% | |
| GATACCAAGAGTTGTCCATG+TGG | + | chr3_1:31927361-31927380 | Msa0356050:CDS | 45.0% | |
| TAGGGAAACGTTGTAGGTTG+AGG | + | chr3_1:31927707-31927726 | Msa0356050:intron | 45.0% | |
| CAAGAGACCTTTCACAGAAG+AGG | + | chr3_1:31927759-31927778 | Msa0356050:three_prime_UTR | 45.0% | |
| GGAAGAAGAGAGACTACTTG+CGG | + | chr3_1:31927780-31927799 | Msa0356050:three_prime_UTR | 45.0% | |
| TTCCCTTACACGACGAGAAT+TGG | + | chr3_1:31927977-31927996 | Msa0356050:three_prime_UTR | 45.0% | |
| !! | TATTATGTAATATTAATTAA+AGG | + | chr3_1:31927490-31927509 | Msa0356050:intron | 5.0% |
| !! | TATTATGTAATATTAATTAA+AGG | + | chr3_1:31927490-31927509 | Msa0356050:intron | 5.0% |
| GTGACCACATGGACAACTCT+TGG | - | chr3_1:31927368-31927387 | None:intergenic | 50.0% | |
| AGAGTTGTCCATGTGGTCAC+TGG | + | chr3_1:31927368-31927387 | Msa0356050:CDS | 50.0% | |
| ! | GGAAACGTTGTAGGTTGAGG+TGG | + | chr3_1:31927710-31927729 | Msa0356050:CDS | 50.0% |
| GTGACCACATGGACAACTCT+TGG | - | chr3_1:31927368-31927387 | None:intergenic | 50.0% | |
| AGAGTTGTCCATGTGGTCAC+TGG | + | chr3_1:31927368-31927387 | Msa0356050:CDS | 50.0% | |
| ! | GGAAACGTTGTAGGTTGAGG+TGG | + | chr3_1:31927710-31927729 | Msa0356050:CDS | 50.0% |
| GCGGGTCGCCAGTGACCACA+TGG | - | chr3_1:31927379-31927398 | None:intergenic | 70.0% | |
| GCGGGTCGCCAGTGACCACA+TGG | - | chr3_1:31927379-31927398 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 31927334 | 31928090 | 31927334 | ID=Msa0356050;Name=Msa0356050 |
| chr3_1 | mRNA | 31927334 | 31928090 | 31927334 | ID=Msa0356050-mRNA-1;Parent=Msa0356050;Name=Msa0356050-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.33|1|1|1|3|337|59 |
| chr3_1 | exon | 31927334 | 31927340 | 31927334 | ID=Msa0356050-mRNA-1:exon:6421;Parent=Msa0356050-mRNA-1 |
| chr3_1 | exon | 31927356 | 31927484 | 31927356 | ID=Msa0356050-mRNA-1:exon:6422;Parent=Msa0356050-mRNA-1 |
| chr3_1 | exon | 31927710 | 31928090 | 31927710 | ID=Msa0356050-mRNA-1:exon:6423;Parent=Msa0356050-mRNA-1 |
| chr3_1 | CDS | 31927334 | 31927340 | 31927334 | ID=Msa0356050-mRNA-1:cds;Parent=Msa0356050-mRNA-1 |
| chr3_1 | CDS | 31927356 | 31927484 | 31927356 | ID=Msa0356050-mRNA-1:cds;Parent=Msa0356050-mRNA-1 |
| chr3_1 | CDS | 31927710 | 31927753 | 31927710 | ID=Msa0356050-mRNA-1:cds;Parent=Msa0356050-mRNA-1 |
| chr3_1 | three_prime_UTR | 31927754 | 31928090 | 31927754 | ID=Msa0356050-mRNA-1:three_prime_utr;Parent=Msa0356050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
