Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0356330 | KEH34998.1 | 91.857 | 307 | 25 | 0 | 1 | 307 | 1 | 307 | 0.0 | 572 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0356330 | sp|Q94BN0|BT2_ARATH | 49.077 | 271 | 127 | 3 | 8 | 267 | 80 | 350 | 1.28e-84 | 261 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0356330 | A0A072V0V6 | 91.857 | 307 | 25 | 0 | 1 | 307 | 1 | 307 | 0.0 | 572 |
Gene ID | Type | Classification |
---|---|---|
Msa0356330 | TR | TAZ |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0356330 | MtrunA17_Chr3g0116501 | 93.000 | 200 | 14 | 0 | 35 | 234 | 1 | 200 | 2.17e-139 | 392 |
Msa0356330 | MtrunA17_Chr4g0058071 | 55.957 | 277 | 119 | 2 | 8 | 281 | 59 | 335 | 3.93e-112 | 328 |
Msa0356330 | MtrunA17_Chr5g0401281 | 38.672 | 256 | 156 | 1 | 7 | 261 | 108 | 363 | 2.27e-64 | 207 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0356330 | AT3G48360.1 | 49.077 | 271 | 127 | 3 | 8 | 267 | 80 | 350 | 1.30e-85 | 261 |
Msa0356330 | AT5G63160.1 | 47.987 | 298 | 143 | 4 | 3 | 291 | 65 | 359 | 2.62e-83 | 256 |
Msa0356330 | AT3G48360.3 | 50.410 | 244 | 110 | 3 | 35 | 267 | 1 | 244 | 1.66e-76 | 234 |
Msa0356330 | AT3G48360.2 | 50.211 | 237 | 108 | 2 | 8 | 234 | 80 | 316 | 2.53e-76 | 237 |
Msa0356330 | AT5G63160.2 | 49.583 | 240 | 113 | 2 | 3 | 234 | 65 | 304 | 2.93e-75 | 233 |
Msa0356330 | AT5G63160.3 | 48.889 | 270 | 126 | 4 | 31 | 291 | 8 | 274 | 5.30e-75 | 231 |
Msa0356330 | AT4G37610.1 | 39.147 | 258 | 152 | 5 | 7 | 261 | 96 | 351 | 2.09e-58 | 192 |
Msa0356330 | AT1G05690.1 | 38.849 | 278 | 162 | 5 | 5 | 278 | 91 | 364 | 5.39e-58 | 191 |
Msa0356330 | AT5G67480.1 | 38.521 | 257 | 154 | 4 | 8 | 261 | 102 | 357 | 2.49e-57 | 189 |
Msa0356330 | AT5G67480.3 | 38.521 | 257 | 154 | 4 | 8 | 261 | 102 | 357 | 2.49e-57 | 189 |
Msa0356330 | AT5G67480.2 | 38.521 | 257 | 154 | 4 | 8 | 261 | 113 | 368 | 2.92e-57 | 189 |
Find 79 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCACCGCTTCAAAATTAT+TGG | 0.124222 | 3_1:+34511412 | None:intergenic |
CTCCACATGTCAAGCTTTGC+AGG | 0.259755 | 3_1:-34511069 | Msa0356330:CDS |
AATGCACCTTTGCTTTAGTT+TGG | 0.301923 | 3_1:+34511541 | None:intergenic |
CATGCAAGGTTCCTCTTTGC+AGG | 0.308788 | 3_1:-34510932 | Msa0356330:intron |
TACATTTCATCTACACTTCC+AGG | 0.332926 | 3_1:-34511840 | Msa0356330:intron |
CATTCCCCGTGGTCATGAAT+TGG | 0.355331 | 3_1:+34511507 | None:intergenic |
ATCATATGATGTGGAGATTA+CGG | 0.355897 | 3_1:-34511111 | Msa0356330:CDS |
AAGTGAAGCTGTACAATGTT+TGG | 0.366740 | 3_1:-34511168 | Msa0356330:CDS |
ATGCACCTTTGCTTTAGTTT+GGG | 0.372763 | 3_1:+34511542 | None:intergenic |
ACACACTTGAAGTAGAGATT+TGG | 0.400686 | 3_1:+34511446 | None:intergenic |
AACACTTTACCACATGTAAT+AGG | 0.401202 | 3_1:-34511037 | Msa0356330:CDS |
AGTCAAGAGAGTCTTCTAAT+TGG | 0.402862 | 3_1:-34510149 | Msa0356330:CDS |
TCATATGATGTGGAGATTAC+GGG | 0.403872 | 3_1:-34511110 | Msa0356330:CDS |
TGGGACTATGCAGGTGCAGC+AGG | 0.411993 | 3_1:-34511622 | Msa0356330:intron |
CCTTGTCCTTAGCAATTGTA+AGG | 0.421710 | 3_1:+34510218 | None:intergenic |
CAAGGAGAGATGAGGTAATT+CGG | 0.427024 | 3_1:-34510200 | Msa0356330:CDS |
GAGGAACCTTGCATGCATCT+TGG | 0.458524 | 3_1:+34510940 | None:intergenic |
GAAGAGAGGAAATAAACATA+GGG | 0.473780 | 3_1:-34511216 | Msa0356330:CDS |
AGAAGAGAGGAAATAAACAT+AGG | 0.475467 | 3_1:-34511217 | Msa0356330:CDS |
GAATACTAGAGTAGAGGAAG+AGG | 0.495047 | 3_1:-34510178 | Msa0356330:CDS |
CAAGAGAGTCTTCTAATTGG+TGG | 0.514114 | 3_1:-34510146 | Msa0356330:CDS |
AACGGTAACGTTAAAATATG+TGG | 0.514946 | 3_1:-34511892 | Msa0356330:CDS |
AAGGCGATGGCTGCATTGGT+TGG | 0.517717 | 3_1:+34511865 | None:intergenic |
TCCACATGTCAAGCTTTGCA+GGG | 0.524594 | 3_1:-34511068 | Msa0356330:CDS |
TTGATCCAATTCATGACCAC+GGG | 0.542240 | 3_1:-34511512 | Msa0356330:CDS |
TATTGCATAAACATGACCCT+TGG | 0.542900 | 3_1:-34511370 | Msa0356330:CDS |
TACGAGGTGGAAACAAATAG+TGG | 0.546964 | 3_1:-34510271 | Msa0356330:CDS |
TACAAAGGCGATGGCTGCAT+TGG | 0.548314 | 3_1:+34511861 | None:intergenic |
CTTTAACCAAGATGCATGCA+AGG | 0.552171 | 3_1:-34510946 | Msa0356330:CDS |
CCTTACAATTGCTAAGGACA+AGG | 0.552243 | 3_1:-34510218 | Msa0356330:CDS |
TCTCAACAAAGAACGAGAAT+CGG | 0.559033 | 3_1:-34511327 | Msa0356330:intron |
ATTCTCGTTCTTTGTTGAGA+CGG | 0.562147 | 3_1:+34511330 | None:intergenic |
TGTCTTCCTTACAATTGCTA+AGG | 0.563853 | 3_1:-34510224 | Msa0356330:CDS |
CCACATGTCAAGCTTTGCAG+GGG | 0.564441 | 3_1:-34511067 | Msa0356330:CDS |
GATAGCTGAGAAAGAGAACA+AGG | 0.575893 | 3_1:-34510301 | Msa0356330:CDS |
ATGATGTCAACTTCGAGCCA+AGG | 0.576653 | 3_1:+34511353 | None:intergenic |
ATTCATGACCACGGGGAATG+TGG | 0.583872 | 3_1:-34511504 | Msa0356330:CDS |
TTGGAGCATATATGTACAGA+AGG | 0.585859 | 3_1:-34511149 | Msa0356330:CDS |
TGTAATAGGAGACTCGAGAG+AGG | 0.587137 | 3_1:-34511023 | Msa0356330:CDS |
TGATGTCAACTTCGAGCCAA+GGG | 0.587603 | 3_1:+34511354 | None:intergenic |
AAAGAAATGGTAACGTCCAA+CGG | 0.587929 | 3_1:-34511910 | None:intergenic |
TGTGGTGGACGTGTTGCACT+TGG | 0.589909 | 3_1:-34511486 | Msa0356330:CDS |
ACGAGGTGGAAACAAATAGT+GGG | 0.591901 | 3_1:-34510270 | Msa0356330:CDS |
CCCCTGCAAAGCTTGACATG+TGG | 0.598401 | 3_1:+34511067 | None:intergenic |
TGTTTCGCATACCTGCAAAG+AGG | 0.600432 | 3_1:+34510921 | None:intergenic |
CAATGCCCAAACTAAAGCAA+AGG | 0.601233 | 3_1:-34511547 | Msa0356330:CDS |
TTGTAAGGAAGACATGGCTA+TGG | 0.601532 | 3_1:+34510233 | None:intergenic |
GAAGCGGTGAAGGAAACAGA+GGG | 0.603513 | 3_1:-34511401 | Msa0356330:CDS |
GCTGAGAAAGAGAACAAGGA+AGG | 0.604375 | 3_1:-34510297 | Msa0356330:CDS |
CAACGTGGCATCATATGATG+TGG | 0.607548 | 3_1:-34511120 | Msa0356330:CDS |
AATTCGGAATACTAGAGTAG+AGG | 0.608608 | 3_1:-34510184 | Msa0356330:CDS |
CTCGAGTCTCCTATTACATG+TGG | 0.612075 | 3_1:+34511028 | None:intergenic |
GGAGACTCGAGAGAGGGTGT+AGG | 0.617740 | 3_1:-34511016 | Msa0356330:CDS |
GAGAGGAAATAAACATAGGG+AGG | 0.621519 | 3_1:-34511213 | Msa0356330:CDS |
CTTGATCCAATTCATGACCA+CGG | 0.630679 | 3_1:-34511513 | Msa0356330:CDS |
CATATGATGTGGAGATTACG+GGG | 0.632166 | 3_1:-34511109 | Msa0356330:CDS |
CATGACCACGGGGAATGTGG+TGG | 0.632280 | 3_1:-34511501 | Msa0356330:CDS |
TAGCAATTGTAAGGAAGACA+TGG | 0.634002 | 3_1:+34510227 | None:intergenic |
GTAGGTGTTGTAAGTCTATG+TGG | 0.636359 | 3_1:-34510998 | Msa0356330:CDS |
GTGAAACAGAGGAAGAAGAG+AGG | 0.641073 | 3_1:-34511230 | Msa0356330:intron |
CGGTGAAGGAAACAGAGGGG+TGG | 0.647649 | 3_1:-34511397 | Msa0356330:CDS |
AGTGTAGATGAAATGTACAA+AGG | 0.647924 | 3_1:+34511846 | None:intergenic |
GCTAAGGACAAGGAGAGATG+AGG | 0.655281 | 3_1:-34510208 | Msa0356330:CDS |
GGGACTATGCAGGTGCAGCA+GGG | 0.659269 | 3_1:-34511621 | Msa0356330:intron |
ACAAGGAAGGTGATACGAGG+TGG | 0.662953 | 3_1:-34510284 | Msa0356330:CDS |
CATGTGGAGAATTTAGTACA+CGG | 0.664071 | 3_1:+34511083 | None:intergenic |
CACATCATATGATGCCACGT+TGG | 0.666948 | 3_1:+34511121 | None:intergenic |
GATGAAATGTACAAAGGCGA+TGG | 0.667885 | 3_1:+34511852 | None:intergenic |
GTAATAGGAGACTCGAGAGA+GGG | 0.668774 | 3_1:-34511022 | Msa0356330:CDS |
TGAAGCGGTGAAGGAAACAG+AGG | 0.678822 | 3_1:-34511402 | Msa0356330:CDS |
TACAGAAGGTTGCACCAACG+TGG | 0.692512 | 3_1:-34511135 | Msa0356330:CDS |
CGAGGTGGAAACAAATAGTG+GGG | 0.698764 | 3_1:-34510269 | Msa0356330:CDS |
CACGTCCACCACATTCCCCG+TGG | 0.707824 | 3_1:+34511496 | None:intergenic |
AGACGTGCGAGAGTACGAGA+AGG | 0.721408 | 3_1:+34511573 | None:intergenic |
ACTATGCAGGTGCAGCAGGG+AGG | 0.723689 | 3_1:-34511618 | Msa0356330:intron |
AGAACAAGGAAGGTGATACG+AGG | 0.743284 | 3_1:-34510287 | Msa0356330:CDS |
ATGATGTGGAGATTACGGGG+AGG | 0.765492 | 3_1:-34511106 | Msa0356330:CDS |
AAGCGGTGAAGGAAACAGAG+GGG | 0.769201 | 3_1:-34511400 | Msa0356330:CDS |
TGATCCAATTCATGACCACG+GGG | 0.774666 | 3_1:-34511511 | Msa0356330:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTGAATTAACAAATTTTT+TGG | - | chr3_1:34510248-34510267 | Msa0356330:CDS | 10.0% |
!! | TATATATTTCTTTAATAAGT+TGG | - | chr3_1:34510757-34510776 | Msa0356330:intron | 10.0% |
!!! | CATTTTTTCATATAAAAAAA+AGG | - | chr3_1:34511147-34511166 | Msa0356330:CDS | 10.0% |
!!! | AATTGAATTAACAAATTTTT+TGG | - | chr3_1:34510248-34510267 | Msa0356330:CDS | 10.0% |
!! | TATATATTTCTTTAATAAGT+TGG | - | chr3_1:34510757-34510776 | Msa0356330:intron | 10.0% |
!!! | CATTTTTTCATATAAAAAAA+AGG | - | chr3_1:34511147-34511166 | Msa0356330:CDS | 10.0% |
!!! | GTTATTAATCGTTATTATTT+TGG | - | chr3_1:34511252-34511271 | Msa0356330:intron | 15.0% |
!!! | GTTATTAATCGTTATTATTT+TGG | - | chr3_1:34511252-34511271 | Msa0356330:intron | 15.0% |
!!! | TAGTTACTAGTTTTCATTTA+GGG | - | chr3_1:34511642-34511661 | Msa0356330:intron | 20.0% |
!! | GGTTAATAAAGCTATATTTA+CGG | - | chr3_1:34511670-34511689 | Msa0356330:intron | 20.0% |
!!! | TAGTTACTAGTTTTCATTTA+GGG | - | chr3_1:34511642-34511661 | Msa0356330:intron | 20.0% |
!! | GGTTAATAAAGCTATATTTA+CGG | - | chr3_1:34511670-34511689 | Msa0356330:intron | 20.0% |
!! | GGTCTAAATACATCAATTTT+CGG | - | chr3_1:34510269-34510288 | Msa0356330:CDS | 25.0% |
!!! | AGTTACCAATAATTTTGAAG+CGG | - | chr3_1:34510600-34510619 | Msa0356330:intron | 25.0% |
!!! | TTCTTTAATAAGTTGGTGAT+CGG | - | chr3_1:34510764-34510783 | Msa0356330:intron | 25.0% |
! | AAACAAATAATAACTACAGC+TGG | - | chr3_1:34511172-34511191 | Msa0356330:CDS | 25.0% |
! | TGACTAATTGAGGAATATAA+TGG | - | chr3_1:34511350-34511369 | Msa0356330:CDS | 25.0% |
!!! | CTTTGAAATTAACCATCAAT+GGG | - | chr3_1:34511421-34511440 | Msa0356330:CDS | 25.0% |
!!! | GTAGTTACTAGTTTTCATTT+AGG | - | chr3_1:34511641-34511660 | Msa0356330:intron | 25.0% |
!!! | TAGTTTTCATTTAGGGTATT+TGG | - | chr3_1:34511649-34511668 | Msa0356330:intron | 25.0% |
!! | GGTCTAAATACATCAATTTT+CGG | - | chr3_1:34510269-34510288 | Msa0356330:CDS | 25.0% |
!!! | AGTTACCAATAATTTTGAAG+CGG | - | chr3_1:34510600-34510619 | Msa0356330:intron | 25.0% |
!!! | TTCTTTAATAAGTTGGTGAT+CGG | - | chr3_1:34510764-34510783 | Msa0356330:intron | 25.0% |
! | AAACAAATAATAACTACAGC+TGG | - | chr3_1:34511172-34511191 | Msa0356330:CDS | 25.0% |
! | TGACTAATTGAGGAATATAA+TGG | - | chr3_1:34511350-34511369 | Msa0356330:CDS | 25.0% |
!!! | CTTTGAAATTAACCATCAAT+GGG | - | chr3_1:34511421-34511440 | Msa0356330:CDS | 25.0% |
!!! | GTAGTTACTAGTTTTCATTT+AGG | - | chr3_1:34511641-34511660 | Msa0356330:intron | 25.0% |
!!! | TAGTTTTCATTTAGGGTATT+TGG | - | chr3_1:34511649-34511668 | Msa0356330:intron | 25.0% |
!!! | ACATATTTTAACGTTACCGT+TGG | + | chr3_1:34510126-34510145 | None:intergenic | 30.0% |
AACGGTAACGTTAAAATATG+TGG | - | chr3_1:34510125-34510144 | Msa0356330:CDS | 30.0% | |
AGTGTAGATGAAATGTACAA+AGG | + | chr3_1:34510174-34510193 | None:intergenic | 30.0% | |
TAATTTCACTATTACTGACC+TGG | + | chr3_1:34510198-34510217 | None:intergenic | 30.0% | |
!!! | CATTGTCTTTTTTTGTCAAG+TGG | + | chr3_1:34510357-34510376 | None:intergenic | 30.0% |
CACTTGACAAAAAAAGACAA+TGG | - | chr3_1:34510355-34510374 | Msa0356330:intron | 30.0% | |
ATAGTCCCAATCAATTCTTA+GGG | + | chr3_1:34510384-34510403 | None:intergenic | 30.0% | |
AGGGAGGATATGAAAAATTA+TGG | - | chr3_1:34510415-34510434 | Msa0356330:intron | 30.0% | |
!! | TCTTTAATAAGTTGGTGATC+GGG | - | chr3_1:34510765-34510784 | Msa0356330:intron | 30.0% |
AGAAGAGAGGAAATAAACAT+AGG | - | chr3_1:34510800-34510819 | Msa0356330:intron | 30.0% | |
GAAGAGAGGAAATAAACATA+GGG | - | chr3_1:34510801-34510820 | Msa0356330:intron | 30.0% | |
ATCATATGATGTGGAGATTA+CGG | - | chr3_1:34510906-34510925 | Msa0356330:intron | 30.0% | |
AACACTTTACCACATGTAAT+AGG | - | chr3_1:34510980-34510999 | Msa0356330:CDS | 30.0% | |
AAGTAGCAATTGACTAATTG+AGG | - | chr3_1:34511340-34511359 | Msa0356330:CDS | 30.0% | |
! | CCATTGATGGTTAATTTCAA+AGG | + | chr3_1:34511423-34511442 | None:intergenic | 30.0% |
!! | CCTTTGAAATTAACCATCAA+TGG | - | chr3_1:34511420-34511439 | Msa0356330:CDS | 30.0% |
TTGTATGATATACCCATTGA+TGG | + | chr3_1:34511436-34511455 | None:intergenic | 30.0% | |
!! | TGGCATATTTTTACATTCGT+TGG | - | chr3_1:34511483-34511502 | Msa0356330:CDS | 30.0% |
!! | GGCATATTTTTACATTCGTT+GGG | - | chr3_1:34511484-34511503 | Msa0356330:CDS | 30.0% |
GACTAACTCACTAAAATGTT+TGG | + | chr3_1:34511594-34511613 | None:intergenic | 30.0% | |
TATATTTACGGAAATGTGAC+AGG | - | chr3_1:34511682-34511701 | Msa0356330:intron | 30.0% | |
! | CAAATGCAATTGCATGTTTT+CGG | - | chr3_1:34511895-34511914 | Msa0356330:CDS | 30.0% |
!!! | ACATATTTTAACGTTACCGT+TGG | + | chr3_1:34510126-34510145 | None:intergenic | 30.0% |
AACGGTAACGTTAAAATATG+TGG | - | chr3_1:34510125-34510144 | Msa0356330:CDS | 30.0% | |
AGTGTAGATGAAATGTACAA+AGG | + | chr3_1:34510174-34510193 | None:intergenic | 30.0% | |
TAATTTCACTATTACTGACC+TGG | + | chr3_1:34510198-34510217 | None:intergenic | 30.0% | |
!!! | CATTGTCTTTTTTTGTCAAG+TGG | + | chr3_1:34510357-34510376 | None:intergenic | 30.0% |
CACTTGACAAAAAAAGACAA+TGG | - | chr3_1:34510355-34510374 | Msa0356330:intron | 30.0% | |
ATAGTCCCAATCAATTCTTA+GGG | + | chr3_1:34510384-34510403 | None:intergenic | 30.0% | |
AGGGAGGATATGAAAAATTA+TGG | - | chr3_1:34510415-34510434 | Msa0356330:intron | 30.0% | |
!! | TCTTTAATAAGTTGGTGATC+GGG | - | chr3_1:34510765-34510784 | Msa0356330:intron | 30.0% |
AGAAGAGAGGAAATAAACAT+AGG | - | chr3_1:34510800-34510819 | Msa0356330:intron | 30.0% | |
GAAGAGAGGAAATAAACATA+GGG | - | chr3_1:34510801-34510820 | Msa0356330:intron | 30.0% | |
ATCATATGATGTGGAGATTA+CGG | - | chr3_1:34510906-34510925 | Msa0356330:intron | 30.0% | |
AACACTTTACCACATGTAAT+AGG | - | chr3_1:34510980-34510999 | Msa0356330:CDS | 30.0% | |
AAGTAGCAATTGACTAATTG+AGG | - | chr3_1:34511340-34511359 | Msa0356330:CDS | 30.0% | |
! | CCATTGATGGTTAATTTCAA+AGG | + | chr3_1:34511423-34511442 | None:intergenic | 30.0% |
!! | CCTTTGAAATTAACCATCAA+TGG | - | chr3_1:34511420-34511439 | Msa0356330:CDS | 30.0% |
TTGTATGATATACCCATTGA+TGG | + | chr3_1:34511436-34511455 | None:intergenic | 30.0% | |
!! | TGGCATATTTTTACATTCGT+TGG | - | chr3_1:34511483-34511502 | Msa0356330:CDS | 30.0% |
!! | GGCATATTTTTACATTCGTT+GGG | - | chr3_1:34511484-34511503 | Msa0356330:CDS | 30.0% |
GACTAACTCACTAAAATGTT+TGG | + | chr3_1:34511594-34511613 | None:intergenic | 30.0% | |
TATATTTACGGAAATGTGAC+AGG | - | chr3_1:34511682-34511701 | Msa0356330:intron | 30.0% | |
! | CAAATGCAATTGCATGTTTT+CGG | - | chr3_1:34511895-34511914 | Msa0356330:CDS | 30.0% |
TACATTTCATCTACACTTCC+AGG | - | chr3_1:34510177-34510196 | Msa0356330:CDS | 35.0% | |
! | TTTTTGTCAAGTGGATGAGT+GGG | + | chr3_1:34510348-34510367 | None:intergenic | 35.0% |
!!! | TTTTTTGTCAAGTGGATGAG+TGG | + | chr3_1:34510349-34510368 | None:intergenic | 35.0% |
CATAGTCCCAATCAATTCTT+AGG | + | chr3_1:34510385-34510404 | None:intergenic | 35.0% | |
! | ATGCACCTTTGCTTTAGTTT+GGG | + | chr3_1:34510478-34510497 | None:intergenic | 35.0% |
AATGCACCTTTGCTTTAGTT+TGG | + | chr3_1:34510479-34510498 | None:intergenic | 35.0% | |
ACACACTTGAAGTAGAGATT+TGG | + | chr3_1:34510574-34510593 | None:intergenic | 35.0% | |
CTTCACCGCTTCAAAATTAT+TGG | + | chr3_1:34510608-34510627 | None:intergenic | 35.0% | |
!!! | CAATAATTTTGAAGCGGTGA+AGG | - | chr3_1:34510606-34510625 | Msa0356330:intron | 35.0% |
TATTGCATAAACATGACCCT+TGG | - | chr3_1:34510647-34510666 | Msa0356330:intron | 35.0% | |
ATTCTCGTTCTTTGTTGAGA+CGG | + | chr3_1:34510690-34510709 | None:intergenic | 35.0% | |
TCTCAACAAAGAACGAGAAT+CGG | - | chr3_1:34510690-34510709 | Msa0356330:intron | 35.0% | |
AAGTGAAGCTGTACAATGTT+TGG | - | chr3_1:34510849-34510868 | Msa0356330:intron | 35.0% | |
TTGGAGCATATATGTACAGA+AGG | - | chr3_1:34510868-34510887 | Msa0356330:intron | 35.0% | |
TCATATGATGTGGAGATTAC+GGG | - | chr3_1:34510907-34510926 | Msa0356330:intron | 35.0% | |
CATGTGGAGAATTTAGTACA+CGG | + | chr3_1:34510937-34510956 | None:intergenic | 35.0% | |
ACAAAGTGACAAAACCAACA+CGG | - | chr3_1:34511510-34511529 | Msa0356330:CDS | 35.0% | |
ATAATGTATACGTACCGTGT+TGG | + | chr3_1:34511527-34511546 | None:intergenic | 35.0% | |
CACGGTACGTATACATTATA+TGG | - | chr3_1:34511528-34511547 | Msa0356330:CDS | 35.0% | |
TAGCAATTGTAAGGAAGACA+TGG | + | chr3_1:34511793-34511812 | None:intergenic | 35.0% | |
TGTCTTCCTTACAATTGCTA+AGG | - | chr3_1:34511793-34511812 | Msa0356330:intron | 35.0% | |
AATTCGGAATACTAGAGTAG+AGG | - | chr3_1:34511833-34511852 | Msa0356330:intron | 35.0% | |
AGTCAAGAGAGTCTTCTAAT+TGG | - | chr3_1:34511868-34511887 | Msa0356330:CDS | 35.0% | |
TACATTTCATCTACACTTCC+AGG | - | chr3_1:34510177-34510196 | Msa0356330:CDS | 35.0% | |
! | TTTTTGTCAAGTGGATGAGT+GGG | + | chr3_1:34510348-34510367 | None:intergenic | 35.0% |
!!! | TTTTTTGTCAAGTGGATGAG+TGG | + | chr3_1:34510349-34510368 | None:intergenic | 35.0% |
CATAGTCCCAATCAATTCTT+AGG | + | chr3_1:34510385-34510404 | None:intergenic | 35.0% | |
! | ATGCACCTTTGCTTTAGTTT+GGG | + | chr3_1:34510478-34510497 | None:intergenic | 35.0% |
AATGCACCTTTGCTTTAGTT+TGG | + | chr3_1:34510479-34510498 | None:intergenic | 35.0% | |
ACACACTTGAAGTAGAGATT+TGG | + | chr3_1:34510574-34510593 | None:intergenic | 35.0% | |
CTTCACCGCTTCAAAATTAT+TGG | + | chr3_1:34510608-34510627 | None:intergenic | 35.0% | |
!!! | CAATAATTTTGAAGCGGTGA+AGG | - | chr3_1:34510606-34510625 | Msa0356330:intron | 35.0% |
TATTGCATAAACATGACCCT+TGG | - | chr3_1:34510647-34510666 | Msa0356330:intron | 35.0% | |
ATTCTCGTTCTTTGTTGAGA+CGG | + | chr3_1:34510690-34510709 | None:intergenic | 35.0% | |
TCTCAACAAAGAACGAGAAT+CGG | - | chr3_1:34510690-34510709 | Msa0356330:intron | 35.0% | |
AAGTGAAGCTGTACAATGTT+TGG | - | chr3_1:34510849-34510868 | Msa0356330:intron | 35.0% | |
TTGGAGCATATATGTACAGA+AGG | - | chr3_1:34510868-34510887 | Msa0356330:intron | 35.0% | |
TCATATGATGTGGAGATTAC+GGG | - | chr3_1:34510907-34510926 | Msa0356330:intron | 35.0% | |
CATGTGGAGAATTTAGTACA+CGG | + | chr3_1:34510937-34510956 | None:intergenic | 35.0% | |
ACAAAGTGACAAAACCAACA+CGG | - | chr3_1:34511510-34511529 | Msa0356330:CDS | 35.0% | |
ATAATGTATACGTACCGTGT+TGG | + | chr3_1:34511527-34511546 | None:intergenic | 35.0% | |
CACGGTACGTATACATTATA+TGG | - | chr3_1:34511528-34511547 | Msa0356330:CDS | 35.0% | |
TAGCAATTGTAAGGAAGACA+TGG | + | chr3_1:34511793-34511812 | None:intergenic | 35.0% | |
TGTCTTCCTTACAATTGCTA+AGG | - | chr3_1:34511793-34511812 | Msa0356330:intron | 35.0% | |
AATTCGGAATACTAGAGTAG+AGG | - | chr3_1:34511833-34511852 | Msa0356330:intron | 35.0% | |
AGTCAAGAGAGTCTTCTAAT+TGG | - | chr3_1:34511868-34511887 | Msa0356330:CDS | 35.0% | |
GATGAAATGTACAAAGGCGA+TGG | + | chr3_1:34510168-34510187 | None:intergenic | 40.0% | |
TGGTGACCCTAAGAATTGAT+TGG | - | chr3_1:34510375-34510394 | Msa0356330:intron | 40.0% | |
GGTGACCCTAAGAATTGATT+GGG | - | chr3_1:34510376-34510395 | Msa0356330:intron | 40.0% | |
AGAATTGATTGGGACTATGC+AGG | - | chr3_1:34510386-34510405 | Msa0356330:intron | 40.0% | |
CAATGCCCAAACTAAAGCAA+AGG | - | chr3_1:34510470-34510489 | Msa0356330:intron | 40.0% | |
CTTGATCCAATTCATGACCA+CGG | - | chr3_1:34510504-34510523 | Msa0356330:intron | 40.0% | |
TTGATCCAATTCATGACCAC+GGG | - | chr3_1:34510505-34510524 | Msa0356330:intron | 40.0% | |
GAGAGGAAATAAACATAGGG+AGG | - | chr3_1:34510804-34510823 | Msa0356330:intron | 40.0% | |
CATATGATGTGGAGATTACG+GGG | - | chr3_1:34510908-34510927 | Msa0356330:intron | 40.0% | |
! | GTAGGTGTTGTAAGTCTATG+TGG | - | chr3_1:34511019-34511038 | Msa0356330:CDS | 40.0% |
CTTTAACCAAGATGCATGCA+AGG | - | chr3_1:34511071-34511090 | Msa0356330:CDS | 40.0% | |
CATGTAGCTAACTACTAACG+TGG | - | chr3_1:34511463-34511482 | Msa0356330:CDS | 40.0% | |
GATAGCTGAGAAAGAGAACA+AGG | - | chr3_1:34511716-34511735 | Msa0356330:intron | 40.0% | |
TACGAGGTGGAAACAAATAG+TGG | - | chr3_1:34511746-34511765 | Msa0356330:intron | 40.0% | |
ACGAGGTGGAAACAAATAGT+GGG | - | chr3_1:34511747-34511766 | Msa0356330:intron | 40.0% | |
TTGTAAGGAAGACATGGCTA+TGG | + | chr3_1:34511787-34511806 | None:intergenic | 40.0% | |
CCTTGTCCTTAGCAATTGTA+AGG | + | chr3_1:34511802-34511821 | None:intergenic | 40.0% | |
CCTTACAATTGCTAAGGACA+AGG | - | chr3_1:34511799-34511818 | Msa0356330:intron | 40.0% | |
CAAGGAGAGATGAGGTAATT+CGG | - | chr3_1:34511817-34511836 | Msa0356330:intron | 40.0% | |
GAATACTAGAGTAGAGGAAG+AGG | - | chr3_1:34511839-34511858 | Msa0356330:intron | 40.0% | |
CAAGAGAGTCTTCTAATTGG+TGG | - | chr3_1:34511871-34511890 | Msa0356330:CDS | 40.0% | |
GATGAAATGTACAAAGGCGA+TGG | + | chr3_1:34510168-34510187 | None:intergenic | 40.0% | |
TGGTGACCCTAAGAATTGAT+TGG | - | chr3_1:34510375-34510394 | Msa0356330:intron | 40.0% | |
GGTGACCCTAAGAATTGATT+GGG | - | chr3_1:34510376-34510395 | Msa0356330:intron | 40.0% | |
AGAATTGATTGGGACTATGC+AGG | - | chr3_1:34510386-34510405 | Msa0356330:intron | 40.0% | |
CAATGCCCAAACTAAAGCAA+AGG | - | chr3_1:34510470-34510489 | Msa0356330:intron | 40.0% | |
CTTGATCCAATTCATGACCA+CGG | - | chr3_1:34510504-34510523 | Msa0356330:intron | 40.0% | |
TTGATCCAATTCATGACCAC+GGG | - | chr3_1:34510505-34510524 | Msa0356330:intron | 40.0% | |
GAGAGGAAATAAACATAGGG+AGG | - | chr3_1:34510804-34510823 | Msa0356330:intron | 40.0% | |
CATATGATGTGGAGATTACG+GGG | - | chr3_1:34510908-34510927 | Msa0356330:intron | 40.0% | |
! | GTAGGTGTTGTAAGTCTATG+TGG | - | chr3_1:34511019-34511038 | Msa0356330:CDS | 40.0% |
CTTTAACCAAGATGCATGCA+AGG | - | chr3_1:34511071-34511090 | Msa0356330:CDS | 40.0% | |
CATGTAGCTAACTACTAACG+TGG | - | chr3_1:34511463-34511482 | Msa0356330:CDS | 40.0% | |
GATAGCTGAGAAAGAGAACA+AGG | - | chr3_1:34511716-34511735 | Msa0356330:intron | 40.0% | |
TACGAGGTGGAAACAAATAG+TGG | - | chr3_1:34511746-34511765 | Msa0356330:intron | 40.0% | |
ACGAGGTGGAAACAAATAGT+GGG | - | chr3_1:34511747-34511766 | Msa0356330:intron | 40.0% | |
TTGTAAGGAAGACATGGCTA+TGG | + | chr3_1:34511787-34511806 | None:intergenic | 40.0% | |
CCTTGTCCTTAGCAATTGTA+AGG | + | chr3_1:34511802-34511821 | None:intergenic | 40.0% | |
CCTTACAATTGCTAAGGACA+AGG | - | chr3_1:34511799-34511818 | Msa0356330:intron | 40.0% | |
CAAGGAGAGATGAGGTAATT+CGG | - | chr3_1:34511817-34511836 | Msa0356330:intron | 40.0% | |
GAATACTAGAGTAGAGGAAG+AGG | - | chr3_1:34511839-34511858 | Msa0356330:intron | 40.0% | |
CAAGAGAGTCTTCTAATTGG+TGG | - | chr3_1:34511871-34511890 | Msa0356330:CDS | 40.0% | |
TGATCCAATTCATGACCACG+GGG | - | chr3_1:34510506-34510525 | Msa0356330:intron | 45.0% | |
TGATGTCAACTTCGAGCCAA+GGG | + | chr3_1:34510666-34510685 | None:intergenic | 45.0% | |
ATGATGTCAACTTCGAGCCA+AGG | + | chr3_1:34510667-34510686 | None:intergenic | 45.0% | |
GTGAAACAGAGGAAGAAGAG+AGG | - | chr3_1:34510787-34510806 | Msa0356330:intron | 45.0% | |
CACATCATATGATGCCACGT+TGG | + | chr3_1:34510899-34510918 | None:intergenic | 45.0% | |
CAACGTGGCATCATATGATG+TGG | - | chr3_1:34510897-34510916 | Msa0356330:intron | 45.0% | |
TCCACATGTCAAGCTTTGCA+GGG | - | chr3_1:34510949-34510968 | Msa0356330:CDS | 45.0% | |
CTCGAGTCTCCTATTACATG+TGG | + | chr3_1:34510992-34511011 | None:intergenic | 45.0% | |
TGTAATAGGAGACTCGAGAG+AGG | - | chr3_1:34510994-34511013 | Msa0356330:CDS | 45.0% | |
GTAATAGGAGACTCGAGAGA+GGG | - | chr3_1:34510995-34511014 | Msa0356330:CDS | 45.0% | |
TGTTTCGCATACCTGCAAAG+AGG | + | chr3_1:34511099-34511118 | None:intergenic | 45.0% | |
GCTGAGAAAGAGAACAAGGA+AGG | - | chr3_1:34511720-34511739 | Msa0356330:intron | 45.0% | |
AGAACAAGGAAGGTGATACG+AGG | - | chr3_1:34511730-34511749 | Msa0356330:intron | 45.0% | |
CGAGGTGGAAACAAATAGTG+GGG | - | chr3_1:34511748-34511767 | Msa0356330:intron | 45.0% | |
TGATCCAATTCATGACCACG+GGG | - | chr3_1:34510506-34510525 | Msa0356330:intron | 45.0% | |
TGATGTCAACTTCGAGCCAA+GGG | + | chr3_1:34510666-34510685 | None:intergenic | 45.0% | |
ATGATGTCAACTTCGAGCCA+AGG | + | chr3_1:34510667-34510686 | None:intergenic | 45.0% | |
GTGAAACAGAGGAAGAAGAG+AGG | - | chr3_1:34510787-34510806 | Msa0356330:intron | 45.0% | |
CACATCATATGATGCCACGT+TGG | + | chr3_1:34510899-34510918 | None:intergenic | 45.0% | |
CAACGTGGCATCATATGATG+TGG | - | chr3_1:34510897-34510916 | Msa0356330:intron | 45.0% | |
TCCACATGTCAAGCTTTGCA+GGG | - | chr3_1:34510949-34510968 | Msa0356330:CDS | 45.0% | |
CTCGAGTCTCCTATTACATG+TGG | + | chr3_1:34510992-34511011 | None:intergenic | 45.0% | |
TGTAATAGGAGACTCGAGAG+AGG | - | chr3_1:34510994-34511013 | Msa0356330:CDS | 45.0% | |
GTAATAGGAGACTCGAGAGA+GGG | - | chr3_1:34510995-34511014 | Msa0356330:CDS | 45.0% | |
TGTTTCGCATACCTGCAAAG+AGG | + | chr3_1:34511099-34511118 | None:intergenic | 45.0% | |
GCTGAGAAAGAGAACAAGGA+AGG | - | chr3_1:34511720-34511739 | Msa0356330:intron | 45.0% | |
AGAACAAGGAAGGTGATACG+AGG | - | chr3_1:34511730-34511749 | Msa0356330:intron | 45.0% | |
CGAGGTGGAAACAAATAGTG+GGG | - | chr3_1:34511748-34511767 | Msa0356330:intron | 45.0% | |
TACAAAGGCGATGGCTGCAT+TGG | + | chr3_1:34510159-34510178 | None:intergenic | 50.0% | |
CATTCCCCGTGGTCATGAAT+TGG | + | chr3_1:34510513-34510532 | None:intergenic | 50.0% | |
ATTCATGACCACGGGGAATG+TGG | - | chr3_1:34510513-34510532 | Msa0356330:intron | 50.0% | |
TGAAGCGGTGAAGGAAACAG+AGG | - | chr3_1:34510615-34510634 | Msa0356330:intron | 50.0% | |
GAAGCGGTGAAGGAAACAGA+GGG | - | chr3_1:34510616-34510635 | Msa0356330:intron | 50.0% | |
AAGCGGTGAAGGAAACAGAG+GGG | - | chr3_1:34510617-34510636 | Msa0356330:intron | 50.0% | |
! | TTGGTGATCGGGTGAAACAG+AGG | - | chr3_1:34510776-34510795 | Msa0356330:intron | 50.0% |
TACAGAAGGTTGCACCAACG+TGG | - | chr3_1:34510882-34510901 | Msa0356330:intron | 50.0% | |
ATGATGTGGAGATTACGGGG+AGG | - | chr3_1:34510911-34510930 | Msa0356330:intron | 50.0% | |
CTCCACATGTCAAGCTTTGC+AGG | - | chr3_1:34510948-34510967 | Msa0356330:CDS | 50.0% | |
CCACATGTCAAGCTTTGCAG+GGG | - | chr3_1:34510950-34510969 | Msa0356330:CDS | 50.0% | |
GAGGAACCTTGCATGCATCT+TGG | + | chr3_1:34511080-34511099 | None:intergenic | 50.0% | |
CATGCAAGGTTCCTCTTTGC+AGG | - | chr3_1:34511085-34511104 | Msa0356330:CDS | 50.0% | |
ACAAGGAAGGTGATACGAGG+TGG | - | chr3_1:34511733-34511752 | Msa0356330:intron | 50.0% | |
GCTAAGGACAAGGAGAGATG+AGG | - | chr3_1:34511809-34511828 | Msa0356330:intron | 50.0% | |
TACAAAGGCGATGGCTGCAT+TGG | + | chr3_1:34510159-34510178 | None:intergenic | 50.0% | |
CATTCCCCGTGGTCATGAAT+TGG | + | chr3_1:34510513-34510532 | None:intergenic | 50.0% | |
ATTCATGACCACGGGGAATG+TGG | - | chr3_1:34510513-34510532 | Msa0356330:intron | 50.0% | |
TGAAGCGGTGAAGGAAACAG+AGG | - | chr3_1:34510615-34510634 | Msa0356330:intron | 50.0% | |
GAAGCGGTGAAGGAAACAGA+GGG | - | chr3_1:34510616-34510635 | Msa0356330:intron | 50.0% | |
AAGCGGTGAAGGAAACAGAG+GGG | - | chr3_1:34510617-34510636 | Msa0356330:intron | 50.0% | |
! | TTGGTGATCGGGTGAAACAG+AGG | - | chr3_1:34510776-34510795 | Msa0356330:intron | 50.0% |
TACAGAAGGTTGCACCAACG+TGG | - | chr3_1:34510882-34510901 | Msa0356330:intron | 50.0% | |
ATGATGTGGAGATTACGGGG+AGG | - | chr3_1:34510911-34510930 | Msa0356330:intron | 50.0% | |
CTCCACATGTCAAGCTTTGC+AGG | - | chr3_1:34510948-34510967 | Msa0356330:CDS | 50.0% | |
CCACATGTCAAGCTTTGCAG+GGG | - | chr3_1:34510950-34510969 | Msa0356330:CDS | 50.0% | |
GAGGAACCTTGCATGCATCT+TGG | + | chr3_1:34511080-34511099 | None:intergenic | 50.0% | |
CATGCAAGGTTCCTCTTTGC+AGG | - | chr3_1:34511085-34511104 | Msa0356330:CDS | 50.0% | |
ACAAGGAAGGTGATACGAGG+TGG | - | chr3_1:34511733-34511752 | Msa0356330:intron | 50.0% | |
GCTAAGGACAAGGAGAGATG+AGG | - | chr3_1:34511809-34511828 | Msa0356330:intron | 50.0% | |
! | AAGGCGATGGCTGCATTGGT+TGG | + | chr3_1:34510155-34510174 | None:intergenic | 55.0% |
! | AGACGTGCGAGAGTACGAGA+AGG | + | chr3_1:34510447-34510466 | None:intergenic | 55.0% |
!! | TGTGGTGGACGTGTTGCACT+TGG | - | chr3_1:34510531-34510550 | Msa0356330:intron | 55.0% |
CCCCTGCAAAGCTTGACATG+TGG | + | chr3_1:34510953-34510972 | None:intergenic | 55.0% | |
! | AAGGCGATGGCTGCATTGGT+TGG | + | chr3_1:34510155-34510174 | None:intergenic | 55.0% |
! | AGACGTGCGAGAGTACGAGA+AGG | + | chr3_1:34510447-34510466 | None:intergenic | 55.0% |
!! | TGTGGTGGACGTGTTGCACT+TGG | - | chr3_1:34510531-34510550 | Msa0356330:intron | 55.0% |
CCCCTGCAAAGCTTGACATG+TGG | + | chr3_1:34510953-34510972 | None:intergenic | 55.0% | |
TGGGACTATGCAGGTGCAGC+AGG | - | chr3_1:34510395-34510414 | Msa0356330:intron | 60.0% | |
GGGACTATGCAGGTGCAGCA+GGG | - | chr3_1:34510396-34510415 | Msa0356330:intron | 60.0% | |
ACTATGCAGGTGCAGCAGGG+AGG | - | chr3_1:34510399-34510418 | Msa0356330:intron | 60.0% | |
CATGACCACGGGGAATGTGG+TGG | - | chr3_1:34510516-34510535 | Msa0356330:intron | 60.0% | |
CGGTGAAGGAAACAGAGGGG+TGG | - | chr3_1:34510620-34510639 | Msa0356330:intron | 60.0% | |
! | GGAGACTCGAGAGAGGGTGT+AGG | - | chr3_1:34511001-34511020 | Msa0356330:CDS | 60.0% |
TGGGACTATGCAGGTGCAGC+AGG | - | chr3_1:34510395-34510414 | Msa0356330:intron | 60.0% | |
GGGACTATGCAGGTGCAGCA+GGG | - | chr3_1:34510396-34510415 | Msa0356330:intron | 60.0% | |
ACTATGCAGGTGCAGCAGGG+AGG | - | chr3_1:34510399-34510418 | Msa0356330:intron | 60.0% | |
CATGACCACGGGGAATGTGG+TGG | - | chr3_1:34510516-34510535 | Msa0356330:intron | 60.0% | |
CGGTGAAGGAAACAGAGGGG+TGG | - | chr3_1:34510620-34510639 | Msa0356330:intron | 60.0% | |
! | GGAGACTCGAGAGAGGGTGT+AGG | - | chr3_1:34511001-34511020 | Msa0356330:CDS | 60.0% |
CACGTCCACCACATTCCCCG+TGG | + | chr3_1:34510524-34510543 | None:intergenic | 65.0% | |
CACGTCCACCACATTCCCCG+TGG | + | chr3_1:34510524-34510543 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 34510113 | 34511926 | 34510113 | ID=Msa0356330;Name=Msa0356330 |
chr3_1 | mRNA | 34510113 | 34511926 | 34510113 | ID=Msa0356330-mRNA-1;Parent=Msa0356330;Name=Msa0356330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|307 |
chr3_1 | exon | 34511841 | 34511926 | 34511841 | ID=Msa0356330-mRNA-1:exon:6522;Parent=Msa0356330-mRNA-1 |
chr3_1 | exon | 34511328 | 34511631 | 34511328 | ID=Msa0356330-mRNA-1:exon:6521;Parent=Msa0356330-mRNA-1 |
chr3_1 | exon | 34510933 | 34511243 | 34510933 | ID=Msa0356330-mRNA-1:exon:6520;Parent=Msa0356330-mRNA-1 |
chr3_1 | exon | 34510113 | 34510335 | 34510113 | ID=Msa0356330-mRNA-1:exon:6519;Parent=Msa0356330-mRNA-1 |
chr3_1 | CDS | 34511841 | 34511926 | 34511841 | ID=Msa0356330-mRNA-1:cds;Parent=Msa0356330-mRNA-1 |
chr3_1 | CDS | 34511328 | 34511631 | 34511328 | ID=Msa0356330-mRNA-1:cds;Parent=Msa0356330-mRNA-1 |
chr3_1 | CDS | 34510933 | 34511243 | 34510933 | ID=Msa0356330-mRNA-1:cds;Parent=Msa0356330-mRNA-1 |
chr3_1 | CDS | 34510113 | 34510335 | 34510113 | ID=Msa0356330-mRNA-1:cds;Parent=Msa0356330-mRNA-1 |
Gene Sequence |
Protein sequence |