AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0356330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0356330 MtrunA17_Chr3g0116501 93.000 200 14 0 35 234 1 200 2.17e-139 392
Msa0356330 MtrunA17_Chr4g0058071 55.957 277 119 2 8 281 59 335 3.93e-112 328
Msa0356330 MtrunA17_Chr5g0401281 38.672 256 156 1 7 261 108 363 2.27e-64 207
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0356330 AT3G48360.1 49.077 271 127 3 8 267 80 350 1.30e-85 261
Msa0356330 AT5G63160.1 47.987 298 143 4 3 291 65 359 2.62e-83 256
Msa0356330 AT3G48360.3 50.410 244 110 3 35 267 1 244 1.66e-76 234
Msa0356330 AT3G48360.2 50.211 237 108 2 8 234 80 316 2.53e-76 237
Msa0356330 AT5G63160.2 49.583 240 113 2 3 234 65 304 2.93e-75 233
Msa0356330 AT5G63160.3 48.889 270 126 4 31 291 8 274 5.30e-75 231
Msa0356330 AT4G37610.1 39.147 258 152 5 7 261 96 351 2.09e-58 192
Msa0356330 AT1G05690.1 38.849 278 162 5 5 278 91 364 5.39e-58 191
Msa0356330 AT5G67480.1 38.521 257 154 4 8 261 102 357 2.49e-57 189
Msa0356330 AT5G67480.3 38.521 257 154 4 8 261 102 357 2.49e-57 189
Msa0356330 AT5G67480.2 38.521 257 154 4 8 261 113 368 2.92e-57 189

Find 79 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCGCTTCAAAATTAT+TGG 0.124222 3_1:+34511412 None:intergenic
CTCCACATGTCAAGCTTTGC+AGG 0.259755 3_1:-34511069 Msa0356330:CDS
AATGCACCTTTGCTTTAGTT+TGG 0.301923 3_1:+34511541 None:intergenic
CATGCAAGGTTCCTCTTTGC+AGG 0.308788 3_1:-34510932 Msa0356330:intron
TACATTTCATCTACACTTCC+AGG 0.332926 3_1:-34511840 Msa0356330:intron
CATTCCCCGTGGTCATGAAT+TGG 0.355331 3_1:+34511507 None:intergenic
ATCATATGATGTGGAGATTA+CGG 0.355897 3_1:-34511111 Msa0356330:CDS
AAGTGAAGCTGTACAATGTT+TGG 0.366740 3_1:-34511168 Msa0356330:CDS
ATGCACCTTTGCTTTAGTTT+GGG 0.372763 3_1:+34511542 None:intergenic
ACACACTTGAAGTAGAGATT+TGG 0.400686 3_1:+34511446 None:intergenic
AACACTTTACCACATGTAAT+AGG 0.401202 3_1:-34511037 Msa0356330:CDS
AGTCAAGAGAGTCTTCTAAT+TGG 0.402862 3_1:-34510149 Msa0356330:CDS
TCATATGATGTGGAGATTAC+GGG 0.403872 3_1:-34511110 Msa0356330:CDS
TGGGACTATGCAGGTGCAGC+AGG 0.411993 3_1:-34511622 Msa0356330:intron
CCTTGTCCTTAGCAATTGTA+AGG 0.421710 3_1:+34510218 None:intergenic
CAAGGAGAGATGAGGTAATT+CGG 0.427024 3_1:-34510200 Msa0356330:CDS
GAGGAACCTTGCATGCATCT+TGG 0.458524 3_1:+34510940 None:intergenic
GAAGAGAGGAAATAAACATA+GGG 0.473780 3_1:-34511216 Msa0356330:CDS
AGAAGAGAGGAAATAAACAT+AGG 0.475467 3_1:-34511217 Msa0356330:CDS
GAATACTAGAGTAGAGGAAG+AGG 0.495047 3_1:-34510178 Msa0356330:CDS
CAAGAGAGTCTTCTAATTGG+TGG 0.514114 3_1:-34510146 Msa0356330:CDS
AACGGTAACGTTAAAATATG+TGG 0.514946 3_1:-34511892 Msa0356330:CDS
AAGGCGATGGCTGCATTGGT+TGG 0.517717 3_1:+34511865 None:intergenic
TCCACATGTCAAGCTTTGCA+GGG 0.524594 3_1:-34511068 Msa0356330:CDS
TTGATCCAATTCATGACCAC+GGG 0.542240 3_1:-34511512 Msa0356330:CDS
TATTGCATAAACATGACCCT+TGG 0.542900 3_1:-34511370 Msa0356330:CDS
TACGAGGTGGAAACAAATAG+TGG 0.546964 3_1:-34510271 Msa0356330:CDS
TACAAAGGCGATGGCTGCAT+TGG 0.548314 3_1:+34511861 None:intergenic
CTTTAACCAAGATGCATGCA+AGG 0.552171 3_1:-34510946 Msa0356330:CDS
CCTTACAATTGCTAAGGACA+AGG 0.552243 3_1:-34510218 Msa0356330:CDS
TCTCAACAAAGAACGAGAAT+CGG 0.559033 3_1:-34511327 Msa0356330:intron
ATTCTCGTTCTTTGTTGAGA+CGG 0.562147 3_1:+34511330 None:intergenic
TGTCTTCCTTACAATTGCTA+AGG 0.563853 3_1:-34510224 Msa0356330:CDS
CCACATGTCAAGCTTTGCAG+GGG 0.564441 3_1:-34511067 Msa0356330:CDS
GATAGCTGAGAAAGAGAACA+AGG 0.575893 3_1:-34510301 Msa0356330:CDS
ATGATGTCAACTTCGAGCCA+AGG 0.576653 3_1:+34511353 None:intergenic
ATTCATGACCACGGGGAATG+TGG 0.583872 3_1:-34511504 Msa0356330:CDS
TTGGAGCATATATGTACAGA+AGG 0.585859 3_1:-34511149 Msa0356330:CDS
TGTAATAGGAGACTCGAGAG+AGG 0.587137 3_1:-34511023 Msa0356330:CDS
TGATGTCAACTTCGAGCCAA+GGG 0.587603 3_1:+34511354 None:intergenic
AAAGAAATGGTAACGTCCAA+CGG 0.587929 3_1:-34511910 None:intergenic
TGTGGTGGACGTGTTGCACT+TGG 0.589909 3_1:-34511486 Msa0356330:CDS
ACGAGGTGGAAACAAATAGT+GGG 0.591901 3_1:-34510270 Msa0356330:CDS
CCCCTGCAAAGCTTGACATG+TGG 0.598401 3_1:+34511067 None:intergenic
TGTTTCGCATACCTGCAAAG+AGG 0.600432 3_1:+34510921 None:intergenic
CAATGCCCAAACTAAAGCAA+AGG 0.601233 3_1:-34511547 Msa0356330:CDS
TTGTAAGGAAGACATGGCTA+TGG 0.601532 3_1:+34510233 None:intergenic
GAAGCGGTGAAGGAAACAGA+GGG 0.603513 3_1:-34511401 Msa0356330:CDS
GCTGAGAAAGAGAACAAGGA+AGG 0.604375 3_1:-34510297 Msa0356330:CDS
CAACGTGGCATCATATGATG+TGG 0.607548 3_1:-34511120 Msa0356330:CDS
AATTCGGAATACTAGAGTAG+AGG 0.608608 3_1:-34510184 Msa0356330:CDS
CTCGAGTCTCCTATTACATG+TGG 0.612075 3_1:+34511028 None:intergenic
GGAGACTCGAGAGAGGGTGT+AGG 0.617740 3_1:-34511016 Msa0356330:CDS
GAGAGGAAATAAACATAGGG+AGG 0.621519 3_1:-34511213 Msa0356330:CDS
CTTGATCCAATTCATGACCA+CGG 0.630679 3_1:-34511513 Msa0356330:CDS
CATATGATGTGGAGATTACG+GGG 0.632166 3_1:-34511109 Msa0356330:CDS
CATGACCACGGGGAATGTGG+TGG 0.632280 3_1:-34511501 Msa0356330:CDS
TAGCAATTGTAAGGAAGACA+TGG 0.634002 3_1:+34510227 None:intergenic
GTAGGTGTTGTAAGTCTATG+TGG 0.636359 3_1:-34510998 Msa0356330:CDS
GTGAAACAGAGGAAGAAGAG+AGG 0.641073 3_1:-34511230 Msa0356330:intron
CGGTGAAGGAAACAGAGGGG+TGG 0.647649 3_1:-34511397 Msa0356330:CDS
AGTGTAGATGAAATGTACAA+AGG 0.647924 3_1:+34511846 None:intergenic
GCTAAGGACAAGGAGAGATG+AGG 0.655281 3_1:-34510208 Msa0356330:CDS
GGGACTATGCAGGTGCAGCA+GGG 0.659269 3_1:-34511621 Msa0356330:intron
ACAAGGAAGGTGATACGAGG+TGG 0.662953 3_1:-34510284 Msa0356330:CDS
CATGTGGAGAATTTAGTACA+CGG 0.664071 3_1:+34511083 None:intergenic
CACATCATATGATGCCACGT+TGG 0.666948 3_1:+34511121 None:intergenic
GATGAAATGTACAAAGGCGA+TGG 0.667885 3_1:+34511852 None:intergenic
GTAATAGGAGACTCGAGAGA+GGG 0.668774 3_1:-34511022 Msa0356330:CDS
TGAAGCGGTGAAGGAAACAG+AGG 0.678822 3_1:-34511402 Msa0356330:CDS
TACAGAAGGTTGCACCAACG+TGG 0.692512 3_1:-34511135 Msa0356330:CDS
CGAGGTGGAAACAAATAGTG+GGG 0.698764 3_1:-34510269 Msa0356330:CDS
CACGTCCACCACATTCCCCG+TGG 0.707824 3_1:+34511496 None:intergenic
AGACGTGCGAGAGTACGAGA+AGG 0.721408 3_1:+34511573 None:intergenic
ACTATGCAGGTGCAGCAGGG+AGG 0.723689 3_1:-34511618 Msa0356330:intron
AGAACAAGGAAGGTGATACG+AGG 0.743284 3_1:-34510287 Msa0356330:CDS
ATGATGTGGAGATTACGGGG+AGG 0.765492 3_1:-34511106 Msa0356330:CDS
AAGCGGTGAAGGAAACAGAG+GGG 0.769201 3_1:-34511400 Msa0356330:CDS
TGATCCAATTCATGACCACG+GGG 0.774666 3_1:-34511511 Msa0356330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGAATTAACAAATTTTT+TGG - chr3_1:34510248-34510267 Msa0356330:CDS 10.0%
!! TATATATTTCTTTAATAAGT+TGG - chr3_1:34510757-34510776 Msa0356330:intron 10.0%
!!! CATTTTTTCATATAAAAAAA+AGG - chr3_1:34511147-34511166 Msa0356330:CDS 10.0%
!!! AATTGAATTAACAAATTTTT+TGG - chr3_1:34510248-34510267 Msa0356330:CDS 10.0%
!! TATATATTTCTTTAATAAGT+TGG - chr3_1:34510757-34510776 Msa0356330:intron 10.0%
!!! CATTTTTTCATATAAAAAAA+AGG - chr3_1:34511147-34511166 Msa0356330:CDS 10.0%
!!! GTTATTAATCGTTATTATTT+TGG - chr3_1:34511252-34511271 Msa0356330:intron 15.0%
!!! GTTATTAATCGTTATTATTT+TGG - chr3_1:34511252-34511271 Msa0356330:intron 15.0%
!!! TAGTTACTAGTTTTCATTTA+GGG - chr3_1:34511642-34511661 Msa0356330:intron 20.0%
!! GGTTAATAAAGCTATATTTA+CGG - chr3_1:34511670-34511689 Msa0356330:intron 20.0%
!!! TAGTTACTAGTTTTCATTTA+GGG - chr3_1:34511642-34511661 Msa0356330:intron 20.0%
!! GGTTAATAAAGCTATATTTA+CGG - chr3_1:34511670-34511689 Msa0356330:intron 20.0%
!! GGTCTAAATACATCAATTTT+CGG - chr3_1:34510269-34510288 Msa0356330:CDS 25.0%
!!! AGTTACCAATAATTTTGAAG+CGG - chr3_1:34510600-34510619 Msa0356330:intron 25.0%
!!! TTCTTTAATAAGTTGGTGAT+CGG - chr3_1:34510764-34510783 Msa0356330:intron 25.0%
! AAACAAATAATAACTACAGC+TGG - chr3_1:34511172-34511191 Msa0356330:CDS 25.0%
! TGACTAATTGAGGAATATAA+TGG - chr3_1:34511350-34511369 Msa0356330:CDS 25.0%
!!! CTTTGAAATTAACCATCAAT+GGG - chr3_1:34511421-34511440 Msa0356330:CDS 25.0%
!!! GTAGTTACTAGTTTTCATTT+AGG - chr3_1:34511641-34511660 Msa0356330:intron 25.0%
!!! TAGTTTTCATTTAGGGTATT+TGG - chr3_1:34511649-34511668 Msa0356330:intron 25.0%
!! GGTCTAAATACATCAATTTT+CGG - chr3_1:34510269-34510288 Msa0356330:CDS 25.0%
!!! AGTTACCAATAATTTTGAAG+CGG - chr3_1:34510600-34510619 Msa0356330:intron 25.0%
!!! TTCTTTAATAAGTTGGTGAT+CGG - chr3_1:34510764-34510783 Msa0356330:intron 25.0%
! AAACAAATAATAACTACAGC+TGG - chr3_1:34511172-34511191 Msa0356330:CDS 25.0%
! TGACTAATTGAGGAATATAA+TGG - chr3_1:34511350-34511369 Msa0356330:CDS 25.0%
!!! CTTTGAAATTAACCATCAAT+GGG - chr3_1:34511421-34511440 Msa0356330:CDS 25.0%
!!! GTAGTTACTAGTTTTCATTT+AGG - chr3_1:34511641-34511660 Msa0356330:intron 25.0%
!!! TAGTTTTCATTTAGGGTATT+TGG - chr3_1:34511649-34511668 Msa0356330:intron 25.0%
!!! ACATATTTTAACGTTACCGT+TGG + chr3_1:34510126-34510145 None:intergenic 30.0%
AACGGTAACGTTAAAATATG+TGG - chr3_1:34510125-34510144 Msa0356330:CDS 30.0%
AGTGTAGATGAAATGTACAA+AGG + chr3_1:34510174-34510193 None:intergenic 30.0%
TAATTTCACTATTACTGACC+TGG + chr3_1:34510198-34510217 None:intergenic 30.0%
!!! CATTGTCTTTTTTTGTCAAG+TGG + chr3_1:34510357-34510376 None:intergenic 30.0%
CACTTGACAAAAAAAGACAA+TGG - chr3_1:34510355-34510374 Msa0356330:intron 30.0%
ATAGTCCCAATCAATTCTTA+GGG + chr3_1:34510384-34510403 None:intergenic 30.0%
AGGGAGGATATGAAAAATTA+TGG - chr3_1:34510415-34510434 Msa0356330:intron 30.0%
!! TCTTTAATAAGTTGGTGATC+GGG - chr3_1:34510765-34510784 Msa0356330:intron 30.0%
AGAAGAGAGGAAATAAACAT+AGG - chr3_1:34510800-34510819 Msa0356330:intron 30.0%
GAAGAGAGGAAATAAACATA+GGG - chr3_1:34510801-34510820 Msa0356330:intron 30.0%
ATCATATGATGTGGAGATTA+CGG - chr3_1:34510906-34510925 Msa0356330:intron 30.0%
AACACTTTACCACATGTAAT+AGG - chr3_1:34510980-34510999 Msa0356330:CDS 30.0%
AAGTAGCAATTGACTAATTG+AGG - chr3_1:34511340-34511359 Msa0356330:CDS 30.0%
! CCATTGATGGTTAATTTCAA+AGG + chr3_1:34511423-34511442 None:intergenic 30.0%
!! CCTTTGAAATTAACCATCAA+TGG - chr3_1:34511420-34511439 Msa0356330:CDS 30.0%
TTGTATGATATACCCATTGA+TGG + chr3_1:34511436-34511455 None:intergenic 30.0%
!! TGGCATATTTTTACATTCGT+TGG - chr3_1:34511483-34511502 Msa0356330:CDS 30.0%
!! GGCATATTTTTACATTCGTT+GGG - chr3_1:34511484-34511503 Msa0356330:CDS 30.0%
GACTAACTCACTAAAATGTT+TGG + chr3_1:34511594-34511613 None:intergenic 30.0%
TATATTTACGGAAATGTGAC+AGG - chr3_1:34511682-34511701 Msa0356330:intron 30.0%
! CAAATGCAATTGCATGTTTT+CGG - chr3_1:34511895-34511914 Msa0356330:CDS 30.0%
!!! ACATATTTTAACGTTACCGT+TGG + chr3_1:34510126-34510145 None:intergenic 30.0%
AACGGTAACGTTAAAATATG+TGG - chr3_1:34510125-34510144 Msa0356330:CDS 30.0%
AGTGTAGATGAAATGTACAA+AGG + chr3_1:34510174-34510193 None:intergenic 30.0%
TAATTTCACTATTACTGACC+TGG + chr3_1:34510198-34510217 None:intergenic 30.0%
!!! CATTGTCTTTTTTTGTCAAG+TGG + chr3_1:34510357-34510376 None:intergenic 30.0%
CACTTGACAAAAAAAGACAA+TGG - chr3_1:34510355-34510374 Msa0356330:intron 30.0%
ATAGTCCCAATCAATTCTTA+GGG + chr3_1:34510384-34510403 None:intergenic 30.0%
AGGGAGGATATGAAAAATTA+TGG - chr3_1:34510415-34510434 Msa0356330:intron 30.0%
!! TCTTTAATAAGTTGGTGATC+GGG - chr3_1:34510765-34510784 Msa0356330:intron 30.0%
AGAAGAGAGGAAATAAACAT+AGG - chr3_1:34510800-34510819 Msa0356330:intron 30.0%
GAAGAGAGGAAATAAACATA+GGG - chr3_1:34510801-34510820 Msa0356330:intron 30.0%
ATCATATGATGTGGAGATTA+CGG - chr3_1:34510906-34510925 Msa0356330:intron 30.0%
AACACTTTACCACATGTAAT+AGG - chr3_1:34510980-34510999 Msa0356330:CDS 30.0%
AAGTAGCAATTGACTAATTG+AGG - chr3_1:34511340-34511359 Msa0356330:CDS 30.0%
! CCATTGATGGTTAATTTCAA+AGG + chr3_1:34511423-34511442 None:intergenic 30.0%
!! CCTTTGAAATTAACCATCAA+TGG - chr3_1:34511420-34511439 Msa0356330:CDS 30.0%
TTGTATGATATACCCATTGA+TGG + chr3_1:34511436-34511455 None:intergenic 30.0%
!! TGGCATATTTTTACATTCGT+TGG - chr3_1:34511483-34511502 Msa0356330:CDS 30.0%
!! GGCATATTTTTACATTCGTT+GGG - chr3_1:34511484-34511503 Msa0356330:CDS 30.0%
GACTAACTCACTAAAATGTT+TGG + chr3_1:34511594-34511613 None:intergenic 30.0%
TATATTTACGGAAATGTGAC+AGG - chr3_1:34511682-34511701 Msa0356330:intron 30.0%
! CAAATGCAATTGCATGTTTT+CGG - chr3_1:34511895-34511914 Msa0356330:CDS 30.0%
TACATTTCATCTACACTTCC+AGG - chr3_1:34510177-34510196 Msa0356330:CDS 35.0%
! TTTTTGTCAAGTGGATGAGT+GGG + chr3_1:34510348-34510367 None:intergenic 35.0%
!!! TTTTTTGTCAAGTGGATGAG+TGG + chr3_1:34510349-34510368 None:intergenic 35.0%
CATAGTCCCAATCAATTCTT+AGG + chr3_1:34510385-34510404 None:intergenic 35.0%
! ATGCACCTTTGCTTTAGTTT+GGG + chr3_1:34510478-34510497 None:intergenic 35.0%
AATGCACCTTTGCTTTAGTT+TGG + chr3_1:34510479-34510498 None:intergenic 35.0%
ACACACTTGAAGTAGAGATT+TGG + chr3_1:34510574-34510593 None:intergenic 35.0%
CTTCACCGCTTCAAAATTAT+TGG + chr3_1:34510608-34510627 None:intergenic 35.0%
!!! CAATAATTTTGAAGCGGTGA+AGG - chr3_1:34510606-34510625 Msa0356330:intron 35.0%
TATTGCATAAACATGACCCT+TGG - chr3_1:34510647-34510666 Msa0356330:intron 35.0%
ATTCTCGTTCTTTGTTGAGA+CGG + chr3_1:34510690-34510709 None:intergenic 35.0%
TCTCAACAAAGAACGAGAAT+CGG - chr3_1:34510690-34510709 Msa0356330:intron 35.0%
AAGTGAAGCTGTACAATGTT+TGG - chr3_1:34510849-34510868 Msa0356330:intron 35.0%
TTGGAGCATATATGTACAGA+AGG - chr3_1:34510868-34510887 Msa0356330:intron 35.0%
TCATATGATGTGGAGATTAC+GGG - chr3_1:34510907-34510926 Msa0356330:intron 35.0%
CATGTGGAGAATTTAGTACA+CGG + chr3_1:34510937-34510956 None:intergenic 35.0%
ACAAAGTGACAAAACCAACA+CGG - chr3_1:34511510-34511529 Msa0356330:CDS 35.0%
ATAATGTATACGTACCGTGT+TGG + chr3_1:34511527-34511546 None:intergenic 35.0%
CACGGTACGTATACATTATA+TGG - chr3_1:34511528-34511547 Msa0356330:CDS 35.0%
TAGCAATTGTAAGGAAGACA+TGG + chr3_1:34511793-34511812 None:intergenic 35.0%
TGTCTTCCTTACAATTGCTA+AGG - chr3_1:34511793-34511812 Msa0356330:intron 35.0%
AATTCGGAATACTAGAGTAG+AGG - chr3_1:34511833-34511852 Msa0356330:intron 35.0%
AGTCAAGAGAGTCTTCTAAT+TGG - chr3_1:34511868-34511887 Msa0356330:CDS 35.0%
TACATTTCATCTACACTTCC+AGG - chr3_1:34510177-34510196 Msa0356330:CDS 35.0%
! TTTTTGTCAAGTGGATGAGT+GGG + chr3_1:34510348-34510367 None:intergenic 35.0%
!!! TTTTTTGTCAAGTGGATGAG+TGG + chr3_1:34510349-34510368 None:intergenic 35.0%
CATAGTCCCAATCAATTCTT+AGG + chr3_1:34510385-34510404 None:intergenic 35.0%
! ATGCACCTTTGCTTTAGTTT+GGG + chr3_1:34510478-34510497 None:intergenic 35.0%
AATGCACCTTTGCTTTAGTT+TGG + chr3_1:34510479-34510498 None:intergenic 35.0%
ACACACTTGAAGTAGAGATT+TGG + chr3_1:34510574-34510593 None:intergenic 35.0%
CTTCACCGCTTCAAAATTAT+TGG + chr3_1:34510608-34510627 None:intergenic 35.0%
!!! CAATAATTTTGAAGCGGTGA+AGG - chr3_1:34510606-34510625 Msa0356330:intron 35.0%
TATTGCATAAACATGACCCT+TGG - chr3_1:34510647-34510666 Msa0356330:intron 35.0%
ATTCTCGTTCTTTGTTGAGA+CGG + chr3_1:34510690-34510709 None:intergenic 35.0%
TCTCAACAAAGAACGAGAAT+CGG - chr3_1:34510690-34510709 Msa0356330:intron 35.0%
AAGTGAAGCTGTACAATGTT+TGG - chr3_1:34510849-34510868 Msa0356330:intron 35.0%
TTGGAGCATATATGTACAGA+AGG - chr3_1:34510868-34510887 Msa0356330:intron 35.0%
TCATATGATGTGGAGATTAC+GGG - chr3_1:34510907-34510926 Msa0356330:intron 35.0%
CATGTGGAGAATTTAGTACA+CGG + chr3_1:34510937-34510956 None:intergenic 35.0%
ACAAAGTGACAAAACCAACA+CGG - chr3_1:34511510-34511529 Msa0356330:CDS 35.0%
ATAATGTATACGTACCGTGT+TGG + chr3_1:34511527-34511546 None:intergenic 35.0%
CACGGTACGTATACATTATA+TGG - chr3_1:34511528-34511547 Msa0356330:CDS 35.0%
TAGCAATTGTAAGGAAGACA+TGG + chr3_1:34511793-34511812 None:intergenic 35.0%
TGTCTTCCTTACAATTGCTA+AGG - chr3_1:34511793-34511812 Msa0356330:intron 35.0%
AATTCGGAATACTAGAGTAG+AGG - chr3_1:34511833-34511852 Msa0356330:intron 35.0%
AGTCAAGAGAGTCTTCTAAT+TGG - chr3_1:34511868-34511887 Msa0356330:CDS 35.0%
GATGAAATGTACAAAGGCGA+TGG + chr3_1:34510168-34510187 None:intergenic 40.0%
TGGTGACCCTAAGAATTGAT+TGG - chr3_1:34510375-34510394 Msa0356330:intron 40.0%
GGTGACCCTAAGAATTGATT+GGG - chr3_1:34510376-34510395 Msa0356330:intron 40.0%
AGAATTGATTGGGACTATGC+AGG - chr3_1:34510386-34510405 Msa0356330:intron 40.0%
CAATGCCCAAACTAAAGCAA+AGG - chr3_1:34510470-34510489 Msa0356330:intron 40.0%
CTTGATCCAATTCATGACCA+CGG - chr3_1:34510504-34510523 Msa0356330:intron 40.0%
TTGATCCAATTCATGACCAC+GGG - chr3_1:34510505-34510524 Msa0356330:intron 40.0%
GAGAGGAAATAAACATAGGG+AGG - chr3_1:34510804-34510823 Msa0356330:intron 40.0%
CATATGATGTGGAGATTACG+GGG - chr3_1:34510908-34510927 Msa0356330:intron 40.0%
! GTAGGTGTTGTAAGTCTATG+TGG - chr3_1:34511019-34511038 Msa0356330:CDS 40.0%
CTTTAACCAAGATGCATGCA+AGG - chr3_1:34511071-34511090 Msa0356330:CDS 40.0%
CATGTAGCTAACTACTAACG+TGG - chr3_1:34511463-34511482 Msa0356330:CDS 40.0%
GATAGCTGAGAAAGAGAACA+AGG - chr3_1:34511716-34511735 Msa0356330:intron 40.0%
TACGAGGTGGAAACAAATAG+TGG - chr3_1:34511746-34511765 Msa0356330:intron 40.0%
ACGAGGTGGAAACAAATAGT+GGG - chr3_1:34511747-34511766 Msa0356330:intron 40.0%
TTGTAAGGAAGACATGGCTA+TGG + chr3_1:34511787-34511806 None:intergenic 40.0%
CCTTGTCCTTAGCAATTGTA+AGG + chr3_1:34511802-34511821 None:intergenic 40.0%
CCTTACAATTGCTAAGGACA+AGG - chr3_1:34511799-34511818 Msa0356330:intron 40.0%
CAAGGAGAGATGAGGTAATT+CGG - chr3_1:34511817-34511836 Msa0356330:intron 40.0%
GAATACTAGAGTAGAGGAAG+AGG - chr3_1:34511839-34511858 Msa0356330:intron 40.0%
CAAGAGAGTCTTCTAATTGG+TGG - chr3_1:34511871-34511890 Msa0356330:CDS 40.0%
GATGAAATGTACAAAGGCGA+TGG + chr3_1:34510168-34510187 None:intergenic 40.0%
TGGTGACCCTAAGAATTGAT+TGG - chr3_1:34510375-34510394 Msa0356330:intron 40.0%
GGTGACCCTAAGAATTGATT+GGG - chr3_1:34510376-34510395 Msa0356330:intron 40.0%
AGAATTGATTGGGACTATGC+AGG - chr3_1:34510386-34510405 Msa0356330:intron 40.0%
CAATGCCCAAACTAAAGCAA+AGG - chr3_1:34510470-34510489 Msa0356330:intron 40.0%
CTTGATCCAATTCATGACCA+CGG - chr3_1:34510504-34510523 Msa0356330:intron 40.0%
TTGATCCAATTCATGACCAC+GGG - chr3_1:34510505-34510524 Msa0356330:intron 40.0%
GAGAGGAAATAAACATAGGG+AGG - chr3_1:34510804-34510823 Msa0356330:intron 40.0%
CATATGATGTGGAGATTACG+GGG - chr3_1:34510908-34510927 Msa0356330:intron 40.0%
! GTAGGTGTTGTAAGTCTATG+TGG - chr3_1:34511019-34511038 Msa0356330:CDS 40.0%
CTTTAACCAAGATGCATGCA+AGG - chr3_1:34511071-34511090 Msa0356330:CDS 40.0%
CATGTAGCTAACTACTAACG+TGG - chr3_1:34511463-34511482 Msa0356330:CDS 40.0%
GATAGCTGAGAAAGAGAACA+AGG - chr3_1:34511716-34511735 Msa0356330:intron 40.0%
TACGAGGTGGAAACAAATAG+TGG - chr3_1:34511746-34511765 Msa0356330:intron 40.0%
ACGAGGTGGAAACAAATAGT+GGG - chr3_1:34511747-34511766 Msa0356330:intron 40.0%
TTGTAAGGAAGACATGGCTA+TGG + chr3_1:34511787-34511806 None:intergenic 40.0%
CCTTGTCCTTAGCAATTGTA+AGG + chr3_1:34511802-34511821 None:intergenic 40.0%
CCTTACAATTGCTAAGGACA+AGG - chr3_1:34511799-34511818 Msa0356330:intron 40.0%
CAAGGAGAGATGAGGTAATT+CGG - chr3_1:34511817-34511836 Msa0356330:intron 40.0%
GAATACTAGAGTAGAGGAAG+AGG - chr3_1:34511839-34511858 Msa0356330:intron 40.0%
CAAGAGAGTCTTCTAATTGG+TGG - chr3_1:34511871-34511890 Msa0356330:CDS 40.0%
TGATCCAATTCATGACCACG+GGG - chr3_1:34510506-34510525 Msa0356330:intron 45.0%
TGATGTCAACTTCGAGCCAA+GGG + chr3_1:34510666-34510685 None:intergenic 45.0%
ATGATGTCAACTTCGAGCCA+AGG + chr3_1:34510667-34510686 None:intergenic 45.0%
GTGAAACAGAGGAAGAAGAG+AGG - chr3_1:34510787-34510806 Msa0356330:intron 45.0%
CACATCATATGATGCCACGT+TGG + chr3_1:34510899-34510918 None:intergenic 45.0%
CAACGTGGCATCATATGATG+TGG - chr3_1:34510897-34510916 Msa0356330:intron 45.0%
TCCACATGTCAAGCTTTGCA+GGG - chr3_1:34510949-34510968 Msa0356330:CDS 45.0%
CTCGAGTCTCCTATTACATG+TGG + chr3_1:34510992-34511011 None:intergenic 45.0%
TGTAATAGGAGACTCGAGAG+AGG - chr3_1:34510994-34511013 Msa0356330:CDS 45.0%
GTAATAGGAGACTCGAGAGA+GGG - chr3_1:34510995-34511014 Msa0356330:CDS 45.0%
TGTTTCGCATACCTGCAAAG+AGG + chr3_1:34511099-34511118 None:intergenic 45.0%
GCTGAGAAAGAGAACAAGGA+AGG - chr3_1:34511720-34511739 Msa0356330:intron 45.0%
AGAACAAGGAAGGTGATACG+AGG - chr3_1:34511730-34511749 Msa0356330:intron 45.0%
CGAGGTGGAAACAAATAGTG+GGG - chr3_1:34511748-34511767 Msa0356330:intron 45.0%
TGATCCAATTCATGACCACG+GGG - chr3_1:34510506-34510525 Msa0356330:intron 45.0%
TGATGTCAACTTCGAGCCAA+GGG + chr3_1:34510666-34510685 None:intergenic 45.0%
ATGATGTCAACTTCGAGCCA+AGG + chr3_1:34510667-34510686 None:intergenic 45.0%
GTGAAACAGAGGAAGAAGAG+AGG - chr3_1:34510787-34510806 Msa0356330:intron 45.0%
CACATCATATGATGCCACGT+TGG + chr3_1:34510899-34510918 None:intergenic 45.0%
CAACGTGGCATCATATGATG+TGG - chr3_1:34510897-34510916 Msa0356330:intron 45.0%
TCCACATGTCAAGCTTTGCA+GGG - chr3_1:34510949-34510968 Msa0356330:CDS 45.0%
CTCGAGTCTCCTATTACATG+TGG + chr3_1:34510992-34511011 None:intergenic 45.0%
TGTAATAGGAGACTCGAGAG+AGG - chr3_1:34510994-34511013 Msa0356330:CDS 45.0%
GTAATAGGAGACTCGAGAGA+GGG - chr3_1:34510995-34511014 Msa0356330:CDS 45.0%
TGTTTCGCATACCTGCAAAG+AGG + chr3_1:34511099-34511118 None:intergenic 45.0%
GCTGAGAAAGAGAACAAGGA+AGG - chr3_1:34511720-34511739 Msa0356330:intron 45.0%
AGAACAAGGAAGGTGATACG+AGG - chr3_1:34511730-34511749 Msa0356330:intron 45.0%
CGAGGTGGAAACAAATAGTG+GGG - chr3_1:34511748-34511767 Msa0356330:intron 45.0%
TACAAAGGCGATGGCTGCAT+TGG + chr3_1:34510159-34510178 None:intergenic 50.0%
CATTCCCCGTGGTCATGAAT+TGG + chr3_1:34510513-34510532 None:intergenic 50.0%
ATTCATGACCACGGGGAATG+TGG - chr3_1:34510513-34510532 Msa0356330:intron 50.0%
TGAAGCGGTGAAGGAAACAG+AGG - chr3_1:34510615-34510634 Msa0356330:intron 50.0%
GAAGCGGTGAAGGAAACAGA+GGG - chr3_1:34510616-34510635 Msa0356330:intron 50.0%
AAGCGGTGAAGGAAACAGAG+GGG - chr3_1:34510617-34510636 Msa0356330:intron 50.0%
! TTGGTGATCGGGTGAAACAG+AGG - chr3_1:34510776-34510795 Msa0356330:intron 50.0%
TACAGAAGGTTGCACCAACG+TGG - chr3_1:34510882-34510901 Msa0356330:intron 50.0%
ATGATGTGGAGATTACGGGG+AGG - chr3_1:34510911-34510930 Msa0356330:intron 50.0%
CTCCACATGTCAAGCTTTGC+AGG - chr3_1:34510948-34510967 Msa0356330:CDS 50.0%
CCACATGTCAAGCTTTGCAG+GGG - chr3_1:34510950-34510969 Msa0356330:CDS 50.0%
GAGGAACCTTGCATGCATCT+TGG + chr3_1:34511080-34511099 None:intergenic 50.0%
CATGCAAGGTTCCTCTTTGC+AGG - chr3_1:34511085-34511104 Msa0356330:CDS 50.0%
ACAAGGAAGGTGATACGAGG+TGG - chr3_1:34511733-34511752 Msa0356330:intron 50.0%
GCTAAGGACAAGGAGAGATG+AGG - chr3_1:34511809-34511828 Msa0356330:intron 50.0%
TACAAAGGCGATGGCTGCAT+TGG + chr3_1:34510159-34510178 None:intergenic 50.0%
CATTCCCCGTGGTCATGAAT+TGG + chr3_1:34510513-34510532 None:intergenic 50.0%
ATTCATGACCACGGGGAATG+TGG - chr3_1:34510513-34510532 Msa0356330:intron 50.0%
TGAAGCGGTGAAGGAAACAG+AGG - chr3_1:34510615-34510634 Msa0356330:intron 50.0%
GAAGCGGTGAAGGAAACAGA+GGG - chr3_1:34510616-34510635 Msa0356330:intron 50.0%
AAGCGGTGAAGGAAACAGAG+GGG - chr3_1:34510617-34510636 Msa0356330:intron 50.0%
! TTGGTGATCGGGTGAAACAG+AGG - chr3_1:34510776-34510795 Msa0356330:intron 50.0%
TACAGAAGGTTGCACCAACG+TGG - chr3_1:34510882-34510901 Msa0356330:intron 50.0%
ATGATGTGGAGATTACGGGG+AGG - chr3_1:34510911-34510930 Msa0356330:intron 50.0%
CTCCACATGTCAAGCTTTGC+AGG - chr3_1:34510948-34510967 Msa0356330:CDS 50.0%
CCACATGTCAAGCTTTGCAG+GGG - chr3_1:34510950-34510969 Msa0356330:CDS 50.0%
GAGGAACCTTGCATGCATCT+TGG + chr3_1:34511080-34511099 None:intergenic 50.0%
CATGCAAGGTTCCTCTTTGC+AGG - chr3_1:34511085-34511104 Msa0356330:CDS 50.0%
ACAAGGAAGGTGATACGAGG+TGG - chr3_1:34511733-34511752 Msa0356330:intron 50.0%
GCTAAGGACAAGGAGAGATG+AGG - chr3_1:34511809-34511828 Msa0356330:intron 50.0%
! AAGGCGATGGCTGCATTGGT+TGG + chr3_1:34510155-34510174 None:intergenic 55.0%
! AGACGTGCGAGAGTACGAGA+AGG + chr3_1:34510447-34510466 None:intergenic 55.0%
!! TGTGGTGGACGTGTTGCACT+TGG - chr3_1:34510531-34510550 Msa0356330:intron 55.0%
CCCCTGCAAAGCTTGACATG+TGG + chr3_1:34510953-34510972 None:intergenic 55.0%
! AAGGCGATGGCTGCATTGGT+TGG + chr3_1:34510155-34510174 None:intergenic 55.0%
! AGACGTGCGAGAGTACGAGA+AGG + chr3_1:34510447-34510466 None:intergenic 55.0%
!! TGTGGTGGACGTGTTGCACT+TGG - chr3_1:34510531-34510550 Msa0356330:intron 55.0%
CCCCTGCAAAGCTTGACATG+TGG + chr3_1:34510953-34510972 None:intergenic 55.0%
TGGGACTATGCAGGTGCAGC+AGG - chr3_1:34510395-34510414 Msa0356330:intron 60.0%
GGGACTATGCAGGTGCAGCA+GGG - chr3_1:34510396-34510415 Msa0356330:intron 60.0%
ACTATGCAGGTGCAGCAGGG+AGG - chr3_1:34510399-34510418 Msa0356330:intron 60.0%
CATGACCACGGGGAATGTGG+TGG - chr3_1:34510516-34510535 Msa0356330:intron 60.0%
CGGTGAAGGAAACAGAGGGG+TGG - chr3_1:34510620-34510639 Msa0356330:intron 60.0%
! GGAGACTCGAGAGAGGGTGT+AGG - chr3_1:34511001-34511020 Msa0356330:CDS 60.0%
TGGGACTATGCAGGTGCAGC+AGG - chr3_1:34510395-34510414 Msa0356330:intron 60.0%
GGGACTATGCAGGTGCAGCA+GGG - chr3_1:34510396-34510415 Msa0356330:intron 60.0%
ACTATGCAGGTGCAGCAGGG+AGG - chr3_1:34510399-34510418 Msa0356330:intron 60.0%
CATGACCACGGGGAATGTGG+TGG - chr3_1:34510516-34510535 Msa0356330:intron 60.0%
CGGTGAAGGAAACAGAGGGG+TGG - chr3_1:34510620-34510639 Msa0356330:intron 60.0%
! GGAGACTCGAGAGAGGGTGT+AGG - chr3_1:34511001-34511020 Msa0356330:CDS 60.0%
CACGTCCACCACATTCCCCG+TGG + chr3_1:34510524-34510543 None:intergenic 65.0%
CACGTCCACCACATTCCCCG+TGG + chr3_1:34510524-34510543 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 34510113 34511926 34510113 ID=Msa0356330;Name=Msa0356330
chr3_1 mRNA 34510113 34511926 34510113 ID=Msa0356330-mRNA-1;Parent=Msa0356330;Name=Msa0356330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|307
chr3_1 exon 34511841 34511926 34511841 ID=Msa0356330-mRNA-1:exon:6522;Parent=Msa0356330-mRNA-1
chr3_1 exon 34511328 34511631 34511328 ID=Msa0356330-mRNA-1:exon:6521;Parent=Msa0356330-mRNA-1
chr3_1 exon 34510933 34511243 34510933 ID=Msa0356330-mRNA-1:exon:6520;Parent=Msa0356330-mRNA-1
chr3_1 exon 34510113 34510335 34510113 ID=Msa0356330-mRNA-1:exon:6519;Parent=Msa0356330-mRNA-1
chr3_1 CDS 34511841 34511926 34511841 ID=Msa0356330-mRNA-1:cds;Parent=Msa0356330-mRNA-1
chr3_1 CDS 34511328 34511631 34511328 ID=Msa0356330-mRNA-1:cds;Parent=Msa0356330-mRNA-1
chr3_1 CDS 34510933 34511243 34510933 ID=Msa0356330-mRNA-1:cds;Parent=Msa0356330-mRNA-1
chr3_1 CDS 34510113 34510335 34510113 ID=Msa0356330-mRNA-1:cds;Parent=Msa0356330-mRNA-1
Gene Sequence

>Msa0356330

ATGGTAACGTCCAACGGTAACGTTAAAATATGTGGTGTTCCAACCAATGCAGCCATCGCCTTTGTACATTTCATCTACACTTCCAGGTGCAGCAGGGAGGATATGAAAAATTATGGAATACACCTTCTCGTACTCTCGCACGTCTTTGCAATGCCCAAACTAAAGCAAAGGTGCATTGTTGACTTGATCCAATTCATGACCACGGGGAATGTGGTGGACGTGTTGCACTTGGCTAAGCTTTGTGATGCACCAAATCTCTACTTCAAGTGTGTCAAGTTAGTTACCAATAATTTTGAAGCGGTGAAGGAAACAGAGGGGTGGAAATTATTGCATAAACATGACCCTTGGCTCGAAGTTGACATCATCCGTCTCAACAAAGAACGAGAATCGAGGAAGAAGAGAGGAAATAAACATAGGGAGGAACAAAAGTTGTTTGTGCAATTAAGTGAAGCTGTACAATGTTTGGAGCATATATGTACAGAAGGTTGCACCAACGTGGCATCATATGATGTGGAGATTACGGGGAGGCCGTGTACTAAATTCTCCACATGTCAAGCTTTGCAGGGGTTGATCAAACACTTTACCACATGTAATAGGAGACTCGAGAGAGGGTGTAGGTGTTGTAAGTCTATGTGGCAACTACTTAGACTGCACTCTTGCATTTGCTTTAACCAAGATGCATGCAAGGTTCCTCTTTGCAGGAAATATCAATTGATAGCTGAGAAAGAGAACAAGGAAGGTGATACGAGGTGGAAACAAATAGTGGGGAAAGTAGCATCAACCATAGCCATGTCTTCCTTACAATTGCTAAGGACAAGGAGAGATGAGGTAATTCGGAATACTAGAGTAGAGGAAGAGGAAGATCAGTCAAGAGAGTCTTCTAATTGGTGGACAAATGCAATTGCATGTTTTCGGTGTATCTAA

Protein sequence

>Msa0356330

MVTSNGNVKICGVPTNAAIAFVHFIYTSRCSREDMKNYGIHLLVLSHVFAMPKLKQRCIVDLIQFMTTGNVVDVLHLAKLCDAPNLYFKCVKLVTNNFEAVKETEGWKLLHKHDPWLEVDIIRLNKERESRKKRGNKHREEQKLFVQLSEAVQCLEHICTEGCTNVASYDVEITGRPCTKFSTCQALQGLIKHFTTCNRRLERGCRCCKSMWQLLRLHSCICFNQDACKVPLCRKYQLIAEKENKEGDTRWKQIVGKVASTIAMSSLQLLRTRRDEVIRNTRVEEEEDQSRESSNWWTNAIACFRCI*