Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0356480 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356480 | MtrunA17_Chr4g0019481 | 42.609 | 115 | 46 | 5 | 3 | 115 | 7 | 103 | 8.16e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGATTCTAATACATAATT+TGG | 0.101359 | 3_1:-35585434 | None:intergenic |
| GAATCTTGATATTGAGAATT+TGG | 0.146841 | 3_1:-35585635 | None:intergenic |
| GAATCTTGATATTGAGAATT+TGG | 0.146841 | 3_1:-35587644 | None:intergenic |
| GGTCGCCAATTATGATAATT+TGG | 0.201528 | 3_1:-35585557 | None:intergenic |
| AACAACCAAATTATCATAAT+TGG | 0.235678 | 3_1:+35585552 | Msa0356480:CDS |
| TTGACGTAGCTGGTTTATTA+AGG | 0.310336 | 3_1:-35587733 | None:intergenic |
| GATATTGATATTGCAGATTT+CGG | 0.339263 | 3_1:-35585514 | None:intergenic |
| ACTTGTGGAGGCGCGGCATT+TGG | 0.351509 | 3_1:-35585599 | None:intergenic |
| GGAGGTTGTTGTTGAGCATT+TGG | 0.376936 | 3_1:-35587587 | None:intergenic |
| GGTTGTTGATGTTGTGCATT+TGG | 0.377852 | 3_1:-35585536 | None:intergenic |
| GGAGGTTGTTGTTGAGCATT+TGG | 0.418862 | 3_1:-35585578 | None:intergenic |
| TAGATTCTAATACATAATTT+GGG | 0.424854 | 3_1:-35585433 | None:intergenic |
| TGTGGAGGCGCGGCATTTGG+AGG | 0.434854 | 3_1:-35585596 | None:intergenic |
| AGGTCAAAAGTTGAAACATT+GGG | 0.452691 | 3_1:-35587713 | None:intergenic |
| AGTTGAGTCTGATTATTTGT+TGG | 0.455886 | 3_1:-35585491 | None:intergenic |
| ATTCATTACTTTGACGTAGC+TGG | 0.471478 | 3_1:-35587743 | None:intergenic |
| AAGTTAAAACATTGGGAGGT+TGG | 0.474064 | 3_1:-35585697 | None:intergenic |
| AAGGTCAAAAGTTGAAACAT+TGG | 0.496803 | 3_1:-35587714 | None:intergenic |
| GGACTCCGTCGTCTTACTTG+TGG | 0.499267 | 3_1:-35587623 | None:intergenic |
| TGTGGAGGCGCAGCAGTTGG+AGG | 0.508608 | 3_1:-35587605 | None:intergenic |
| GGACTCCGTCGTCGCACTTG+TGG | 0.519002 | 3_1:-35585614 | None:intergenic |
| ACTTGTGGAGGCGCAGCAGT+TGG | 0.521106 | 3_1:-35587608 | None:intergenic |
| CTAATACATAATTTGGGTGA+TGG | 0.521786 | 3_1:-35585427 | None:intergenic |
| AAGTTGAAACATTGGGAGGT+TGG | 0.524458 | 3_1:-35587706 | None:intergenic |
| CGCCTCCACAAGTGCGACGA+CGG | 0.556965 | 3_1:+35585609 | Msa0356480:CDS |
| CTCCGTCGTCGCACTTGTGG+AGG | 0.577106 | 3_1:-35585611 | None:intergenic |
| TCAAAAGTTAAAACATTGGG+AGG | 0.582338 | 3_1:-35585701 | None:intergenic |
| AAATGCATCACCACCACGCG+AGG | 0.587449 | 3_1:+35587667 | Msa0356480:CDS |
| AAATGCATCGCCACCACACG+AGG | 0.587606 | 3_1:+35585658 | Msa0356480:CDS |
| TCGAACTGTCCCTCGTGTGG+TGG | 0.602471 | 3_1:-35585668 | None:intergenic |
| CTCCGTCGTCTTACTTGTGG+AGG | 0.602579 | 3_1:-35587620 | None:intergenic |
| AAGTCGAACTGTCCCTCGTG+TGG | 0.616466 | 3_1:-35585671 | None:intergenic |
| AAGTCGAACTGTCCCTCGCG+TGG | 0.618023 | 3_1:-35587680 | None:intergenic |
| TGGACGACGTACTGCCTCCG+AGG | 0.623117 | 3_1:-35585471 | None:intergenic |
| ATGTCTACATGTGACGAATG+CGG | 0.625451 | 3_1:+35585356 | Msa0356480:CDS |
| TCACACATAAGTTGTTGAGA+TGG | 0.625728 | 3_1:-35585389 | None:intergenic |
| TCGTCGCACTTGTGGAGGCG+CGG | 0.629493 | 3_1:-35585606 | None:intergenic |
| TCGAACTGTCCCTCGCGTGG+TGG | 0.637192 | 3_1:-35587677 | None:intergenic |
| GGACGACGTACTGCCTCCGA+GGG | 0.637475 | 3_1:-35585470 | None:intergenic |
| TCAAAAGTTGAAACATTGGG+AGG | 0.642822 | 3_1:-35587710 | None:intergenic |
| TAGTGCACAAGGTCAACCCT+CGG | 0.643583 | 3_1:+35585454 | Msa0356480:intron |
| AATGCATCACCACCACGCGA+GGG | 0.676679 | 3_1:+35587668 | Msa0356480:CDS |
| CGCCTCCACAAGTAAGACGA+CGG | 0.679914 | 3_1:+35587618 | Msa0356480:CDS |
| TGCACAAGGTCAACCCTCGG+AGG | 0.711886 | 3_1:+35585457 | Msa0356480:intron |
| AATGCATCGCCACCACACGA+GGG | 0.726560 | 3_1:+35585659 | Msa0356480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATATACTAAAATATATA+TGG | - | chr3_1:35585987-35586006 | None:intergenic | 10.0% |
| !!! | AACAAAATATAGTTAATTTT+GGG | - | chr3_1:35586192-35586211 | None:intergenic | 10.0% |
| !!! | AGAAAAATATATATTTTAGT+TGG | + | chr3_1:35586470-35586489 | Msa0356480:intron | 10.0% |
| !!! | GAAAAATATATATTTTAGTT+GGG | + | chr3_1:35586471-35586490 | Msa0356480:intron | 10.0% |
| !!! | TTTTACAAAAGTTATTTTTT+TGG | + | chr3_1:35586760-35586779 | Msa0356480:intron | 10.0% |
| !! | AAAAATATTATAAAATGTAG+TGG | - | chr3_1:35587100-35587119 | None:intergenic | 10.0% |
| !! | AACATATACTAAAATATATA+TGG | - | chr3_1:35585987-35586006 | None:intergenic | 10.0% |
| !!! | AACAAAATATAGTTAATTTT+GGG | - | chr3_1:35586192-35586211 | None:intergenic | 10.0% |
| !!! | AGAAAAATATATATTTTAGT+TGG | + | chr3_1:35586470-35586489 | Msa0356480:intron | 10.0% |
| !!! | GAAAAATATATATTTTAGTT+GGG | + | chr3_1:35586471-35586490 | Msa0356480:intron | 10.0% |
| !!! | TTTTACAAAAGTTATTTTTT+TGG | + | chr3_1:35586760-35586779 | Msa0356480:intron | 10.0% |
| !! | AAAAATATTATAAAATGTAG+TGG | - | chr3_1:35587100-35587119 | None:intergenic | 10.0% |
| !! | TAGATTCTAATACATAATTT+GGG | - | chr3_1:35585436-35585455 | None:intergenic | 15.0% |
| !!! | ATTACATCAATTATATTTTG+AGG | + | chr3_1:35585810-35585829 | Msa0356480:intron | 15.0% |
| !! | AAATGCTATAAAAAATAATC+TGG | - | chr3_1:35586049-35586068 | None:intergenic | 15.0% |
| !!! | GAACAAAATATAGTTAATTT+TGG | - | chr3_1:35586193-35586212 | None:intergenic | 15.0% |
| !!! | CACATTTGTTAATTAAATTA+AGG | - | chr3_1:35586215-35586234 | None:intergenic | 15.0% |
| !! | TATTGAAAAATTCACTTTAA+CGG | + | chr3_1:35586242-35586261 | Msa0356480:intron | 15.0% |
| !! | ATTACTTAAATATGAATTGA+AGG | + | chr3_1:35586299-35586318 | Msa0356480:intron | 15.0% |
| !! | AATAAAAGAGTGAAAATAAA+TGG | + | chr3_1:35586333-35586352 | Msa0356480:intron | 15.0% |
| !!! | GGTATTTTTCAAATATAAAA+AGG | + | chr3_1:35586684-35586703 | Msa0356480:intron | 15.0% |
| !! | TAGATTCTAATACATAATTT+GGG | - | chr3_1:35585436-35585455 | None:intergenic | 15.0% |
| !! | TAGATTCTAATACATAATTT+GGG | - | chr3_1:35585436-35585455 | None:intergenic | 15.0% |
| !!! | ATTACATCAATTATATTTTG+AGG | + | chr3_1:35585810-35585829 | Msa0356480:intron | 15.0% |
| !! | AAATGCTATAAAAAATAATC+TGG | - | chr3_1:35586049-35586068 | None:intergenic | 15.0% |
| !!! | GAACAAAATATAGTTAATTT+TGG | - | chr3_1:35586193-35586212 | None:intergenic | 15.0% |
| !!! | CACATTTGTTAATTAAATTA+AGG | - | chr3_1:35586215-35586234 | None:intergenic | 15.0% |
| !! | TATTGAAAAATTCACTTTAA+CGG | + | chr3_1:35586242-35586261 | Msa0356480:intron | 15.0% |
| !! | ATTACTTAAATATGAATTGA+AGG | + | chr3_1:35586299-35586318 | Msa0356480:intron | 15.0% |
| !! | AATAAAAGAGTGAAAATAAA+TGG | + | chr3_1:35586333-35586352 | Msa0356480:intron | 15.0% |
| !!! | GGTATTTTTCAAATATAAAA+AGG | + | chr3_1:35586684-35586703 | Msa0356480:intron | 15.0% |
| !! | TAGATTCTAATACATAATTT+GGG | - | chr3_1:35585436-35585455 | None:intergenic | 15.0% |
| !! | CTAGATTCTAATACATAATT+TGG | - | chr3_1:35585437-35585456 | None:intergenic | 20.0% |
| !! | AACAACCAAATTATCATAAT+TGG | + | chr3_1:35585552-35585571 | Msa0356480:CDS | 20.0% |
| !! | TAATGAATACATTACTTGAT+TGG | + | chr3_1:35585749-35585768 | Msa0356480:intron | 20.0% |
| !!! | TTTTATTAGTATCTAGATGT+TGG | + | chr3_1:35585784-35585803 | Msa0356480:intron | 20.0% |
| !! | AGATTTATCTCACTTAAAAT+AGG | + | chr3_1:35585841-35585860 | Msa0356480:intron | 20.0% |
| !!! | TTGTTATTTACACCTTTAAA+AGG | + | chr3_1:35586087-35586106 | Msa0356480:intron | 20.0% |
| !!! | AATTTCAAGATACCTTTTAA+AGG | - | chr3_1:35586102-35586121 | None:intergenic | 20.0% |
| !! | GCAAAACTAATAAATGTAAT+TGG | + | chr3_1:35586133-35586152 | Msa0356480:intron | 20.0% |
| !!! | AAATATAGTTAATTTTGGGT+TGG | - | chr3_1:35586188-35586207 | None:intergenic | 20.0% |
| !! | ATTGAAAAATTCACTTTAAC+GGG | + | chr3_1:35586243-35586262 | Msa0356480:intron | 20.0% |
| !! | AACTTGATATTTCTTCTTTA+TGG | + | chr3_1:35586421-35586440 | Msa0356480:intron | 20.0% |
| !! | ACTTGATATTTCTTCTTTAT+GGG | + | chr3_1:35586422-35586441 | Msa0356480:intron | 20.0% |
| !!! | ATATCATAGTATTTAAGACA+TGG | - | chr3_1:35586500-35586519 | None:intergenic | 20.0% |
| !!! | GTTATTTTTTTGGATAATTC+AGG | + | chr3_1:35586770-35586789 | Msa0356480:intron | 20.0% |
| !! | TAAGCAAAAGAAAAAAACAT+TGG | - | chr3_1:35586967-35586986 | None:intergenic | 20.0% |
| !! | CTAGATTCTAATACATAATT+TGG | - | chr3_1:35585437-35585456 | None:intergenic | 20.0% |
| !! | CTAGATTCTAATACATAATT+TGG | - | chr3_1:35585437-35585456 | None:intergenic | 20.0% |
| !! | AACAACCAAATTATCATAAT+TGG | + | chr3_1:35585552-35585571 | Msa0356480:CDS | 20.0% |
| !! | TAATGAATACATTACTTGAT+TGG | + | chr3_1:35585749-35585768 | Msa0356480:intron | 20.0% |
| !!! | TTTTATTAGTATCTAGATGT+TGG | + | chr3_1:35585784-35585803 | Msa0356480:intron | 20.0% |
| !! | AGATTTATCTCACTTAAAAT+AGG | + | chr3_1:35585841-35585860 | Msa0356480:intron | 20.0% |
| !!! | TTGTTATTTACACCTTTAAA+AGG | + | chr3_1:35586087-35586106 | Msa0356480:intron | 20.0% |
| !!! | AATTTCAAGATACCTTTTAA+AGG | - | chr3_1:35586102-35586121 | None:intergenic | 20.0% |
| !! | GCAAAACTAATAAATGTAAT+TGG | + | chr3_1:35586133-35586152 | Msa0356480:intron | 20.0% |
| !!! | AAATATAGTTAATTTTGGGT+TGG | - | chr3_1:35586188-35586207 | None:intergenic | 20.0% |
| !! | ATTGAAAAATTCACTTTAAC+GGG | + | chr3_1:35586243-35586262 | Msa0356480:intron | 20.0% |
| !! | AACTTGATATTTCTTCTTTA+TGG | + | chr3_1:35586421-35586440 | Msa0356480:intron | 20.0% |
| !! | ACTTGATATTTCTTCTTTAT+GGG | + | chr3_1:35586422-35586441 | Msa0356480:intron | 20.0% |
| !!! | ATATCATAGTATTTAAGACA+TGG | - | chr3_1:35586500-35586519 | None:intergenic | 20.0% |
| !!! | GTTATTTTTTTGGATAATTC+AGG | + | chr3_1:35586770-35586789 | Msa0356480:intron | 20.0% |
| !! | TAAGCAAAAGAAAAAAACAT+TGG | - | chr3_1:35586967-35586986 | None:intergenic | 20.0% |
| !! | CTAGATTCTAATACATAATT+TGG | - | chr3_1:35585437-35585456 | None:intergenic | 20.0% |
| ! | GATATTGATATTGCAGATTT+CGG | - | chr3_1:35585517-35585536 | None:intergenic | 25.0% |
| ! | GAATCTTGATATTGAGAATT+TGG | - | chr3_1:35585638-35585657 | None:intergenic | 25.0% |
| ! | AGGTCAAAAGTTAAAACATT+GGG | - | chr3_1:35585707-35585726 | None:intergenic | 25.0% |
| ! | AAGGTCAAAAGTTAAAACAT+TGG | - | chr3_1:35585708-35585727 | None:intergenic | 25.0% |
| ! | CTATGAACATTCATAATTCT+TGG | + | chr3_1:35585912-35585931 | Msa0356480:intron | 25.0% |
| ! | ACAATATCATCTCACTAATT+TGG | - | chr3_1:35586536-35586555 | None:intergenic | 25.0% |
| ! | GAGAAAAACATCAAATATAG+TGG | - | chr3_1:35586626-35586645 | None:intergenic | 25.0% |
| ! | TAACTCTTGTTAAAGAAGTT+AGG | - | chr3_1:35586830-35586849 | None:intergenic | 25.0% |
| ! | ATGATAAAAGAAAAAGACTG+CGG | + | chr3_1:35586892-35586911 | Msa0356480:intron | 25.0% |
| ! | ATCATATTTCGTTGATGTAT+AGG | + | chr3_1:35586922-35586941 | Msa0356480:intron | 25.0% |
| !!! | TATTTACATCGAGTTGTTTT+CGG | - | chr3_1:35587225-35587244 | None:intergenic | 25.0% |
| ! | GGTTGCTAATTATGATAATT+TGG | - | chr3_1:35587569-35587588 | None:intergenic | 25.0% |
| ! | GAATCTTGATATTGAGAATT+TGG | - | chr3_1:35585638-35585657 | None:intergenic | 25.0% |
| ! | GATATTGATATTGCAGATTT+CGG | - | chr3_1:35585517-35585536 | None:intergenic | 25.0% |
| ! | GAATCTTGATATTGAGAATT+TGG | - | chr3_1:35585638-35585657 | None:intergenic | 25.0% |
| ! | AGGTCAAAAGTTAAAACATT+GGG | - | chr3_1:35585707-35585726 | None:intergenic | 25.0% |
| ! | AAGGTCAAAAGTTAAAACAT+TGG | - | chr3_1:35585708-35585727 | None:intergenic | 25.0% |
| ! | CTATGAACATTCATAATTCT+TGG | + | chr3_1:35585912-35585931 | Msa0356480:intron | 25.0% |
| ! | ACAATATCATCTCACTAATT+TGG | - | chr3_1:35586536-35586555 | None:intergenic | 25.0% |
| ! | GAGAAAAACATCAAATATAG+TGG | - | chr3_1:35586626-35586645 | None:intergenic | 25.0% |
| ! | TAACTCTTGTTAAAGAAGTT+AGG | - | chr3_1:35586830-35586849 | None:intergenic | 25.0% |
| ! | ATGATAAAAGAAAAAGACTG+CGG | + | chr3_1:35586892-35586911 | Msa0356480:intron | 25.0% |
| ! | ATCATATTTCGTTGATGTAT+AGG | + | chr3_1:35586922-35586941 | Msa0356480:intron | 25.0% |
| !!! | TATTTACATCGAGTTGTTTT+CGG | - | chr3_1:35587225-35587244 | None:intergenic | 25.0% |
| ! | GGTTGCTAATTATGATAATT+TGG | - | chr3_1:35587569-35587588 | None:intergenic | 25.0% |
| ! | GAATCTTGATATTGAGAATT+TGG | - | chr3_1:35585638-35585657 | None:intergenic | 25.0% |
| CTAATACATAATTTGGGTGA+TGG | - | chr3_1:35585430-35585449 | None:intergenic | 30.0% | |
| AGTTGAGTCTGATTATTTGT+TGG | - | chr3_1:35585494-35585513 | None:intergenic | 30.0% | |
| TCAAAAGTTAAAACATTGGG+AGG | - | chr3_1:35585704-35585723 | None:intergenic | 30.0% | |
| ATCCTCTACTATTACACATT+AGG | + | chr3_1:35585879-35585898 | Msa0356480:intron | 30.0% | |
| AACCTAATGTGTAATAGTAG+AGG | - | chr3_1:35585884-35585903 | None:intergenic | 30.0% | |
| TAATTGGATTATTACGTGTG+TGG | + | chr3_1:35586149-35586168 | Msa0356480:intron | 30.0% | |
| ! | CATACAAACTTGATTTTGAG+AGG | + | chr3_1:35586388-35586407 | Msa0356480:intron | 30.0% |
| ! | TCATAGTATTTAAGACATGG+TGG | - | chr3_1:35586497-35586516 | None:intergenic | 30.0% |
| ! | TGATGTTTTTCTCTCAGTTT+TGG | + | chr3_1:35586633-35586652 | Msa0356480:intron | 30.0% |
| ! | GATGTTTTTCTCTCAGTTTT+GGG | + | chr3_1:35586634-35586653 | Msa0356480:intron | 30.0% |
| ! | CGTAAGAATTATTTTCGTCA+AGG | - | chr3_1:35586662-35586681 | None:intergenic | 30.0% |
| GACGAAAATAATTCTTACGA+AGG | + | chr3_1:35586663-35586682 | Msa0356480:intron | 30.0% | |
| ! | TTTTGGATAATTCAGGAGAA+AGG | + | chr3_1:35586777-35586796 | Msa0356480:intron | 30.0% |
| TGTTAAAGAAGTTAGGATGT+CGG | - | chr3_1:35586823-35586842 | None:intergenic | 30.0% | |
| CTTCTTTAACAAGAGTTAAG+AGG | + | chr3_1:35586832-35586851 | Msa0356480:intron | 30.0% | |
| AGAGAATGACTAGTGATTTA+GGG | - | chr3_1:35587305-35587324 | None:intergenic | 30.0% | |
| AAGAGAATGACTAGTGATTT+AGG | - | chr3_1:35587306-35587325 | None:intergenic | 30.0% | |
| ! | TCCCAAATTTTGTTACAACT+GGG | + | chr3_1:35587337-35587356 | Msa0356480:intron | 30.0% |
| ACCCAGTTGTAACAAAATTT+GGG | - | chr3_1:35587341-35587360 | None:intergenic | 30.0% | |
| TACCCAGTTGTAACAAAATT+TGG | - | chr3_1:35587342-35587361 | None:intergenic | 30.0% | |
| CTAATACATAATTTGGGTGA+TGG | - | chr3_1:35585430-35585449 | None:intergenic | 30.0% | |
| AGTTGAGTCTGATTATTTGT+TGG | - | chr3_1:35585494-35585513 | None:intergenic | 30.0% | |
| GATATTGATATTGCAGGTTT+CGG | - | chr3_1:35587526-35587545 | None:intergenic | 30.0% | |
| CATTTGGATATTGATATTGC+AGG | - | chr3_1:35585523-35585542 | None:intergenic | 30.0% | |
| AGGTCAAAAGTTGAAACATT+GGG | - | chr3_1:35587716-35587735 | None:intergenic | 30.0% | |
| AAGGTCAAAAGTTGAAACAT+TGG | - | chr3_1:35587717-35587736 | None:intergenic | 30.0% | |
| CTAATACATAATTTGGGTGA+TGG | - | chr3_1:35585430-35585449 | None:intergenic | 30.0% | |
| AGTTGAGTCTGATTATTTGT+TGG | - | chr3_1:35585494-35585513 | None:intergenic | 30.0% | |
| TCAAAAGTTAAAACATTGGG+AGG | - | chr3_1:35585704-35585723 | None:intergenic | 30.0% | |
| ATCCTCTACTATTACACATT+AGG | + | chr3_1:35585879-35585898 | Msa0356480:intron | 30.0% | |
| AACCTAATGTGTAATAGTAG+AGG | - | chr3_1:35585884-35585903 | None:intergenic | 30.0% | |
| TAATTGGATTATTACGTGTG+TGG | + | chr3_1:35586149-35586168 | Msa0356480:intron | 30.0% | |
| ! | CATACAAACTTGATTTTGAG+AGG | + | chr3_1:35586388-35586407 | Msa0356480:intron | 30.0% |
| ! | TCATAGTATTTAAGACATGG+TGG | - | chr3_1:35586497-35586516 | None:intergenic | 30.0% |
| ! | TGATGTTTTTCTCTCAGTTT+TGG | + | chr3_1:35586633-35586652 | Msa0356480:intron | 30.0% |
| ! | GATGTTTTTCTCTCAGTTTT+GGG | + | chr3_1:35586634-35586653 | Msa0356480:intron | 30.0% |
| ! | CGTAAGAATTATTTTCGTCA+AGG | - | chr3_1:35586662-35586681 | None:intergenic | 30.0% |
| GACGAAAATAATTCTTACGA+AGG | + | chr3_1:35586663-35586682 | Msa0356480:intron | 30.0% | |
| ! | TTTTGGATAATTCAGGAGAA+AGG | + | chr3_1:35586777-35586796 | Msa0356480:intron | 30.0% |
| TGTTAAAGAAGTTAGGATGT+CGG | - | chr3_1:35586823-35586842 | None:intergenic | 30.0% | |
| CTTCTTTAACAAGAGTTAAG+AGG | + | chr3_1:35586832-35586851 | Msa0356480:intron | 30.0% | |
| AGAGAATGACTAGTGATTTA+GGG | - | chr3_1:35587305-35587324 | None:intergenic | 30.0% | |
| AAGAGAATGACTAGTGATTT+AGG | - | chr3_1:35587306-35587325 | None:intergenic | 30.0% | |
| ! | TCCCAAATTTTGTTACAACT+GGG | + | chr3_1:35587337-35587356 | Msa0356480:intron | 30.0% |
| ACCCAGTTGTAACAAAATTT+GGG | - | chr3_1:35587341-35587360 | None:intergenic | 30.0% | |
| TACCCAGTTGTAACAAAATT+TGG | - | chr3_1:35587342-35587361 | None:intergenic | 30.0% | |
| CTAATACATAATTTGGGTGA+TGG | - | chr3_1:35585430-35585449 | None:intergenic | 30.0% | |
| AGTTGAGTCTGATTATTTGT+TGG | - | chr3_1:35585494-35585513 | None:intergenic | 30.0% | |
| GATATTGATATTGCAGGTTT+CGG | - | chr3_1:35587526-35587545 | None:intergenic | 30.0% | |
| CATTTGGATATTGATATTGC+AGG | - | chr3_1:35585523-35585542 | None:intergenic | 30.0% | |
| AGGTCAAAAGTTGAAACATT+GGG | - | chr3_1:35587716-35587735 | None:intergenic | 30.0% | |
| AAGGTCAAAAGTTGAAACAT+TGG | - | chr3_1:35587717-35587736 | None:intergenic | 30.0% | |
| TCACACATAAGTTGTTGAGA+TGG | - | chr3_1:35585392-35585411 | None:intergenic | 35.0% | |
| GTATTAGAATCTAGTGCACA+AGG | + | chr3_1:35585443-35585462 | Msa0356480:intron | 35.0% | |
| GGTCGCCAATTATGATAATT+TGG | - | chr3_1:35585560-35585579 | None:intergenic | 35.0% | |
| AAGTTAAAACATTGGGAGGT+TGG | - | chr3_1:35585700-35585719 | None:intergenic | 35.0% | |
| ! | TTGACGTAGCTGGTTTATTA+AGG | - | chr3_1:35585727-35585746 | None:intergenic | 35.0% |
| ATTCATTACTTTGACGTAGC+TGG | - | chr3_1:35585737-35585756 | None:intergenic | 35.0% | |
| TAATCTGGTTGCAATATGCT+AGG | - | chr3_1:35586034-35586053 | None:intergenic | 35.0% | |
| ! | GTCCCAAATTTTGTTACAAC+TGG | + | chr3_1:35587336-35587355 | Msa0356480:intron | 35.0% |
| TCACACATAAGTTGTTGAGA+TGG | - | chr3_1:35585392-35585411 | None:intergenic | 35.0% | |
| GTATTAGAATCTAGTGCACA+AGG | + | chr3_1:35585443-35585462 | Msa0356480:intron | 35.0% | |
| TCAAAAGTTGAAACATTGGG+AGG | - | chr3_1:35587713-35587732 | None:intergenic | 35.0% | |
| ! | TTGACGTAGCTGGTTTATTA+AGG | - | chr3_1:35585727-35585746 | None:intergenic | 35.0% |
| TCACACATAAGTTGTTGAGA+TGG | - | chr3_1:35585392-35585411 | None:intergenic | 35.0% | |
| GTATTAGAATCTAGTGCACA+AGG | + | chr3_1:35585443-35585462 | Msa0356480:intron | 35.0% | |
| GGTCGCCAATTATGATAATT+TGG | - | chr3_1:35585560-35585579 | None:intergenic | 35.0% | |
| AAGTTAAAACATTGGGAGGT+TGG | - | chr3_1:35585700-35585719 | None:intergenic | 35.0% | |
| ! | TTGACGTAGCTGGTTTATTA+AGG | - | chr3_1:35585727-35585746 | None:intergenic | 35.0% |
| ATTCATTACTTTGACGTAGC+TGG | - | chr3_1:35585737-35585756 | None:intergenic | 35.0% | |
| TAATCTGGTTGCAATATGCT+AGG | - | chr3_1:35586034-35586053 | None:intergenic | 35.0% | |
| ! | GTCCCAAATTTTGTTACAAC+TGG | + | chr3_1:35587336-35587355 | Msa0356480:intron | 35.0% |
| TCACACATAAGTTGTTGAGA+TGG | - | chr3_1:35585392-35585411 | None:intergenic | 35.0% | |
| GTATTAGAATCTAGTGCACA+AGG | + | chr3_1:35585443-35585462 | Msa0356480:intron | 35.0% | |
| TCAAAAGTTGAAACATTGGG+AGG | - | chr3_1:35587713-35587732 | None:intergenic | 35.0% | |
| ! | TTGACGTAGCTGGTTTATTA+AGG | - | chr3_1:35585727-35585746 | None:intergenic | 35.0% |
| ATGTCTACATGTGACGAATG+CGG | + | chr3_1:35585356-35585375 | Msa0356480:CDS | 40.0% | |
| GGTTGTTGATGTTGTGCATT+TGG | - | chr3_1:35585539-35585558 | None:intergenic | 40.0% | |
| GATTATTACGTGTGTGGATG+CGG | + | chr3_1:35586155-35586174 | Msa0356480:intron | 40.0% | |
| GAGAAAGGACATGCATCAAA+AGG | + | chr3_1:35586792-35586811 | Msa0356480:intron | 40.0% | |
| GGTTGTTGATGTTGTGCATT+TGG | - | chr3_1:35585539-35585558 | None:intergenic | 40.0% | |
| AAGTTGAAACATTGGGAGGT+TGG | - | chr3_1:35587709-35587728 | None:intergenic | 40.0% | |
| ATGTCTACATGTGACGAATG+CGG | + | chr3_1:35585356-35585375 | Msa0356480:CDS | 40.0% | |
| GGTTGTTGATGTTGTGCATT+TGG | - | chr3_1:35585539-35585558 | None:intergenic | 40.0% | |
| GATTATTACGTGTGTGGATG+CGG | + | chr3_1:35586155-35586174 | Msa0356480:intron | 40.0% | |
| GAGAAAGGACATGCATCAAA+AGG | + | chr3_1:35586792-35586811 | Msa0356480:intron | 40.0% | |
| GGTTGTTGATGTTGTGCATT+TGG | - | chr3_1:35585539-35585558 | None:intergenic | 40.0% | |
| AAGTTGAAACATTGGGAGGT+TGG | - | chr3_1:35587709-35587728 | None:intergenic | 40.0% | |
| ! | GGAGGTTGTTGTTGAGCATT+TGG | - | chr3_1:35585581-35585600 | None:intergenic | 45.0% |
| ATGTCGACCTGTGACAAATG+CGG | + | chr3_1:35587365-35587384 | Msa0356480:intron | 45.0% | |
| ! | GGAGGTTGTTGTTGAGCATT+TGG | - | chr3_1:35585581-35585600 | None:intergenic | 45.0% |
| ! | GGAGGTTGTTGTTGAGCATT+TGG | - | chr3_1:35585581-35585600 | None:intergenic | 45.0% |
| ATGTCGACCTGTGACAAATG+CGG | + | chr3_1:35587365-35587384 | Msa0356480:intron | 45.0% | |
| ! | GGAGGTTGTTGTTGAGCATT+TGG | - | chr3_1:35585581-35585600 | None:intergenic | 45.0% |
| !!! | AAATAAAAGATTTTAAATTA+AGG | + | chr3_1:35586866-35586885 | Msa0356480:intron | 5.0% |
| !!! | AATAAAAGATTTTAAATTAA+GGG | + | chr3_1:35586867-35586886 | Msa0356480:intron | 5.0% |
| !!! | AAATAAAAGATTTTAAATTA+AGG | + | chr3_1:35586866-35586885 | Msa0356480:intron | 5.0% |
| !!! | AATAAAAGATTTTAAATTAA+GGG | + | chr3_1:35586867-35586886 | Msa0356480:intron | 5.0% |
| TAGTGCACAAGGTCAACCCT+CGG | + | chr3_1:35585454-35585473 | Msa0356480:intron | 50.0% | |
| TAGTGCACAAGGTCAACCCT+CGG | + | chr3_1:35585454-35585473 | Msa0356480:intron | 50.0% | |
| TAGTGCACAAGGTCAACCCT+CGG | + | chr3_1:35585454-35585473 | Msa0356480:intron | 50.0% | |
| TAGTGCACAAGGTCAACCCT+CGG | + | chr3_1:35585454-35585473 | Msa0356480:intron | 50.0% | |
| AAATGCATCGCCACCACACG+AGG | + | chr3_1:35585658-35585677 | Msa0356480:CDS | 55.0% | |
| AATGCATCGCCACCACACGA+GGG | + | chr3_1:35585659-35585678 | Msa0356480:CDS | 55.0% | |
| AAGTCGAACTGTCCCTCGTG+TGG | - | chr3_1:35585674-35585693 | None:intergenic | 55.0% | |
| CGCCTCCACAAGTAAGACGA+CGG | + | chr3_1:35587618-35587637 | Msa0356480:CDS | 55.0% | |
| CTCCGTCGTCTTACTTGTGG+AGG | - | chr3_1:35587623-35587642 | None:intergenic | 55.0% | |
| GGACTCCGTCGTCTTACTTG+TGG | - | chr3_1:35587626-35587645 | None:intergenic | 55.0% | |
| AAATGCATCACCACCACGCG+AGG | + | chr3_1:35587667-35587686 | Msa0356480:CDS | 55.0% | |
| AATGCATCACCACCACGCGA+GGG | + | chr3_1:35587668-35587687 | Msa0356480:CDS | 55.0% | |
| AAATGCATCGCCACCACACG+AGG | + | chr3_1:35585658-35585677 | Msa0356480:CDS | 55.0% | |
| AATGCATCGCCACCACACGA+GGG | + | chr3_1:35585659-35585678 | Msa0356480:CDS | 55.0% | |
| AAGTCGAACTGTCCCTCGTG+TGG | - | chr3_1:35585674-35585693 | None:intergenic | 55.0% | |
| CGCCTCCACAAGTAAGACGA+CGG | + | chr3_1:35587618-35587637 | Msa0356480:CDS | 55.0% | |
| CTCCGTCGTCTTACTTGTGG+AGG | - | chr3_1:35587623-35587642 | None:intergenic | 55.0% | |
| GGACTCCGTCGTCTTACTTG+TGG | - | chr3_1:35587626-35587645 | None:intergenic | 55.0% | |
| AAATGCATCACCACCACGCG+AGG | + | chr3_1:35587667-35587686 | Msa0356480:CDS | 55.0% | |
| AATGCATCACCACCACGCGA+GGG | + | chr3_1:35587668-35587687 | Msa0356480:CDS | 55.0% | |
| TGCACAAGGTCAACCCTCGG+AGG | + | chr3_1:35585457-35585476 | Msa0356480:intron | 60.0% | |
| ! | ACTTGTGGAGGCGCGGCATT+TGG | - | chr3_1:35585602-35585621 | None:intergenic | 60.0% |
| TCGAACTGTCCCTCGTGTGG+TGG | - | chr3_1:35585671-35585690 | None:intergenic | 60.0% | |
| ACGTGCGCCGCATTTGTCAC+AGG | - | chr3_1:35587375-35587394 | None:intergenic | 60.0% | |
| TGCACAAGGTCAACCCTCGG+AGG | + | chr3_1:35585457-35585476 | Msa0356480:intron | 60.0% | |
| GGAAGACGTAGTGCCTCCGA+GGG | - | chr3_1:35587482-35587501 | None:intergenic | 60.0% | |
| TGGAAGACGTAGTGCCTCCG+AGG | - | chr3_1:35587483-35587502 | None:intergenic | 60.0% | |
| ! | ACTTGTGGAGGCGCAGCAGT+TGG | - | chr3_1:35587611-35587630 | None:intergenic | 60.0% |
| AAGTCGAACTGTCCCTCGCG+TGG | - | chr3_1:35587683-35587702 | None:intergenic | 60.0% | |
| TGCACAAGGTCAACCCTCGG+AGG | + | chr3_1:35585457-35585476 | Msa0356480:intron | 60.0% | |
| ! | ACTTGTGGAGGCGCGGCATT+TGG | - | chr3_1:35585602-35585621 | None:intergenic | 60.0% |
| TCGAACTGTCCCTCGTGTGG+TGG | - | chr3_1:35585671-35585690 | None:intergenic | 60.0% | |
| ACGTGCGCCGCATTTGTCAC+AGG | - | chr3_1:35587375-35587394 | None:intergenic | 60.0% | |
| TGCACAAGGTCAACCCTCGG+AGG | + | chr3_1:35585457-35585476 | Msa0356480:intron | 60.0% | |
| GGAAGACGTAGTGCCTCCGA+GGG | - | chr3_1:35587482-35587501 | None:intergenic | 60.0% | |
| TGGAAGACGTAGTGCCTCCG+AGG | - | chr3_1:35587483-35587502 | None:intergenic | 60.0% | |
| ! | ACTTGTGGAGGCGCAGCAGT+TGG | - | chr3_1:35587611-35587630 | None:intergenic | 60.0% |
| AAGTCGAACTGTCCCTCGCG+TGG | - | chr3_1:35587683-35587702 | None:intergenic | 60.0% | |
| GGACGACGTACTGCCTCCGA+GGG | - | chr3_1:35585473-35585492 | None:intergenic | 65.0% | |
| TGGACGACGTACTGCCTCCG+AGG | - | chr3_1:35585474-35585493 | None:intergenic | 65.0% | |
| ! | TGTGGAGGCGCGGCATTTGG+AGG | - | chr3_1:35585599-35585618 | None:intergenic | 65.0% |
| TCGTCGCACTTGTGGAGGCG+CGG | - | chr3_1:35585609-35585628 | None:intergenic | 65.0% | |
| CGCCTCCACAAGTGCGACGA+CGG | + | chr3_1:35585609-35585628 | Msa0356480:CDS | 65.0% | |
| CTCCGTCGTCGCACTTGTGG+AGG | - | chr3_1:35585614-35585633 | None:intergenic | 65.0% | |
| GGACTCCGTCGTCGCACTTG+TGG | - | chr3_1:35585617-35585636 | None:intergenic | 65.0% | |
| ! | TGTGGAGGCGCAGCAGTTGG+AGG | - | chr3_1:35587608-35587627 | None:intergenic | 65.0% |
| TCGAACTGTCCCTCGCGTGG+TGG | - | chr3_1:35587680-35587699 | None:intergenic | 65.0% | |
| GGACGACGTACTGCCTCCGA+GGG | - | chr3_1:35585473-35585492 | None:intergenic | 65.0% | |
| TGGACGACGTACTGCCTCCG+AGG | - | chr3_1:35585474-35585493 | None:intergenic | 65.0% | |
| ! | TGTGGAGGCGCGGCATTTGG+AGG | - | chr3_1:35585599-35585618 | None:intergenic | 65.0% |
| TCGTCGCACTTGTGGAGGCG+CGG | - | chr3_1:35585609-35585628 | None:intergenic | 65.0% | |
| CGCCTCCACAAGTGCGACGA+CGG | + | chr3_1:35585609-35585628 | Msa0356480:CDS | 65.0% | |
| CTCCGTCGTCGCACTTGTGG+AGG | - | chr3_1:35585614-35585633 | None:intergenic | 65.0% | |
| GGACTCCGTCGTCGCACTTG+TGG | - | chr3_1:35585617-35585636 | None:intergenic | 65.0% | |
| ! | TGTGGAGGCGCAGCAGTTGG+AGG | - | chr3_1:35587608-35587627 | None:intergenic | 65.0% |
| TCGAACTGTCCCTCGCGTGG+TGG | - | chr3_1:35587680-35587699 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 35585356 | 35587760 | 35585356 | ID=Msa0356480;Name=Msa0356480 |
| chr3_1 | mRNA | 35585356 | 35587760 | 35585356 | ID=Msa0356480-mRNA-1;Parent=Msa0356480;Name=Msa0356480-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0|0|3|0|173 |
| chr3_1 | exon | 35585356 | 35585455 | 35585356 | ID=Msa0356480-mRNA-1:exon:6587;Parent=Msa0356480-mRNA-1 |
| chr3_1 | exon | 35585465 | 35585709 | 35585465 | ID=Msa0356480-mRNA-1:exon:6588;Parent=Msa0356480-mRNA-1 |
| chr3_1 | exon | 35587584 | 35587760 | 35587584 | ID=Msa0356480-mRNA-1:exon:6589;Parent=Msa0356480-mRNA-1 |
| chr3_1 | CDS | 35585356 | 35585455 | 35585356 | ID=Msa0356480-mRNA-1:cds;Parent=Msa0356480-mRNA-1 |
| chr3_1 | CDS | 35585465 | 35585709 | 35585465 | ID=Msa0356480-mRNA-1:cds;Parent=Msa0356480-mRNA-1 |
| chr3_1 | CDS | 35587584 | 35587760 | 35587584 | ID=Msa0356480-mRNA-1:cds;Parent=Msa0356480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
