Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356740 | CAA65979.1 | 100.000 | 104 | 0 | 0 | 1 | 104 | 1 | 104 | 5.01e-64 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356740 | sp|Q5JK68|CDKC2_ORYSJ | 85.577 | 104 | 15 | 0 | 1 | 104 | 1 | 104 | 3.30e-57 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356740 | P93320 | 100.000 | 104 | 0 | 0 | 1 | 104 | 1 | 104 | 2.39e-64 | 212 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356740 | MtrunA17_Chr3g0093571 | 100.000 | 104 | 0 | 0 | 1 | 104 | 1 | 104 | 5.77e-68 | 211 |
| Msa0356740 | MtrunA17_Chr3g0093391 | 95.098 | 102 | 5 | 0 | 3 | 104 | 1 | 102 | 9.19e-63 | 198 |
| Msa0356740 | MtrunA17_Chr4g0039141 | 78.125 | 64 | 14 | 0 | 1 | 64 | 79 | 142 | 2.06e-30 | 106 |
| Msa0356740 | MtrunA17_Chr4g0051261 | 56.522 | 69 | 30 | 0 | 25 | 93 | 4 | 72 | 8.88e-22 | 86.7 |
| Msa0356740 | MtrunA17_Chr2g0293491 | 56.522 | 69 | 30 | 0 | 25 | 93 | 4 | 72 | 1.42e-21 | 86.3 |
| Msa0356740 | MtrunA17_Chr4g0057791 | 60.000 | 65 | 26 | 0 | 20 | 84 | 213 | 277 | 5.12e-20 | 83.2 |
| Msa0356740 | MtrunA17_Chr8g0377071 | 56.000 | 75 | 33 | 0 | 17 | 91 | 377 | 451 | 1.58e-19 | 82.0 |
| Msa0356740 | MtrunA17_Chr3g0122781 | 58.108 | 74 | 31 | 0 | 18 | 91 | 409 | 482 | 2.34e-19 | 81.6 |
| Msa0356740 | MtrunA17_Chr4g0061141 | 58.333 | 72 | 28 | 2 | 23 | 93 | 103 | 173 | 2.90e-18 | 78.6 |
| Msa0356740 | MtrunA17_Chr1g0191221 | 56.000 | 75 | 31 | 2 | 20 | 93 | 117 | 190 | 4.34e-18 | 77.8 |
| Msa0356740 | MtrunA17_Chr2g0286421 | 56.000 | 75 | 31 | 2 | 20 | 93 | 97 | 170 | 2.78e-17 | 75.5 |
| Msa0356740 | MtrunA17_Chr2g0317501 | 57.333 | 75 | 30 | 2 | 20 | 93 | 129 | 202 | 3.44e-17 | 75.5 |
| Msa0356740 | MtrunA17_Chr7g0273601 | 54.667 | 75 | 32 | 2 | 20 | 93 | 102 | 175 | 4.01e-17 | 75.1 |
| Msa0356740 | MtrunA17_Chr7g0218071 | 54.167 | 72 | 31 | 2 | 23 | 93 | 118 | 188 | 7.39e-17 | 74.3 |
| Msa0356740 | MtrunA17_Chr8g0385971 | 54.667 | 75 | 32 | 2 | 20 | 93 | 85 | 158 | 8.06e-17 | 74.3 |
| Msa0356740 | MtrunA17_Chr4g0066691 | 56.000 | 75 | 31 | 2 | 20 | 93 | 99 | 172 | 9.06e-17 | 73.9 |
| Msa0356740 | MtrunA17_Chr4g0002001 | 45.122 | 82 | 44 | 1 | 25 | 105 | 4 | 85 | 9.24e-17 | 73.6 |
| Msa0356740 | MtrunA17_Chr3g0131861 | 54.667 | 75 | 32 | 2 | 20 | 93 | 92 | 165 | 1.02e-16 | 73.9 |
| Msa0356740 | MtrunA17_Chr1g0187371 | 52.174 | 69 | 32 | 1 | 23 | 90 | 16 | 84 | 1.20e-16 | 73.2 |
| Msa0356740 | MtrunA17_Chr6g0453711 | 50.000 | 72 | 34 | 2 | 23 | 93 | 108 | 178 | 6.09e-16 | 71.6 |
| Msa0356740 | MtrunA17_Chr4g0040141 | 49.333 | 75 | 36 | 2 | 20 | 93 | 124 | 197 | 1.81e-15 | 70.5 |
| Msa0356740 | MtrunA17_Chr1g0194881 | 88.889 | 36 | 4 | 0 | 1 | 36 | 1 | 36 | 1.90e-15 | 69.7 |
| Msa0356740 | MtrunA17_Chr6g0483151 | 50.000 | 68 | 34 | 0 | 20 | 87 | 9 | 76 | 2.70e-15 | 69.7 |
| Msa0356740 | MtrunA17_Chr5g0396361 | 50.667 | 75 | 35 | 2 | 20 | 93 | 135 | 208 | 3.07e-15 | 69.7 |
| Msa0356740 | MtrunA17_Chr3g0099951 | 47.143 | 70 | 35 | 1 | 23 | 90 | 12 | 81 | 2.42e-14 | 67.0 |
| Msa0356740 | MtrunA17_Chr2g0324461 | 46.667 | 75 | 38 | 2 | 20 | 93 | 136 | 209 | 1.20e-13 | 65.1 |
| Msa0356740 | MtrunA17_Chr1g0201571 | 41.333 | 75 | 44 | 0 | 19 | 93 | 120 | 194 | 5.66e-13 | 63.2 |
| Msa0356740 | MtrunA17_Chr3g0130781 | 42.029 | 69 | 37 | 1 | 25 | 90 | 18 | 86 | 1.16e-11 | 59.7 |
| Msa0356740 | MtrunA17_Chr8g0383451 | 48.438 | 64 | 31 | 2 | 31 | 93 | 4 | 66 | 2.89e-11 | 58.5 |
| Msa0356740 | MtrunA17_Chr8g0339221 | 43.939 | 66 | 32 | 2 | 28 | 91 | 7 | 69 | 4.49e-11 | 57.8 |
| Msa0356740 | MtrunA17_Chr3g0141871 | 45.312 | 64 | 35 | 0 | 28 | 91 | 35 | 98 | 9.84e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356740 | AT5G10270.1 | 83.810 | 105 | 16 | 1 | 1 | 104 | 1 | 105 | 5.94e-53 | 172 |
| Msa0356740 | AT5G64960.1 | 82.857 | 105 | 17 | 1 | 1 | 104 | 1 | 105 | 1.76e-51 | 169 |
| Msa0356740 | AT1G67580.1 | 58.667 | 75 | 31 | 0 | 17 | 91 | 398 | 472 | 1.04e-25 | 100 |
| Msa0356740 | AT1G67580.2 | 58.667 | 75 | 31 | 0 | 17 | 91 | 398 | 472 | 1.04e-25 | 100 |
| Msa0356740 | AT3G48750.1 | 56.944 | 72 | 31 | 0 | 22 | 93 | 1 | 72 | 1.99e-22 | 88.6 |
| Msa0356740 | AT5G63370.9 | 49.451 | 91 | 38 | 2 | 6 | 92 | 148 | 234 | 3.47e-21 | 86.7 |
| Msa0356740 | AT5G63370.5 | 50.000 | 90 | 37 | 2 | 6 | 91 | 282 | 367 | 3.76e-21 | 87.0 |
| Msa0356740 | AT5G63370.10 | 50.000 | 90 | 37 | 2 | 6 | 91 | 282 | 367 | 3.76e-21 | 87.0 |
| Msa0356740 | AT5G63370.7 | 50.000 | 90 | 37 | 2 | 6 | 91 | 282 | 367 | 4.13e-21 | 87.0 |
| Msa0356740 | AT5G63370.8 | 50.000 | 90 | 37 | 2 | 6 | 91 | 282 | 367 | 4.13e-21 | 87.0 |
| Msa0356740 | AT5G63370.4 | 50.000 | 90 | 37 | 2 | 6 | 91 | 282 | 367 | 4.13e-21 | 87.0 |
| Msa0356740 | AT5G63370.6 | 50.000 | 90 | 37 | 2 | 6 | 91 | 282 | 367 | 4.13e-21 | 87.0 |
| Msa0356740 | AT5G63370.1 | 50.000 | 90 | 37 | 2 | 6 | 91 | 282 | 367 | 4.13e-21 | 87.0 |
| Msa0356740 | AT5G63370.2 | 49.451 | 91 | 38 | 2 | 6 | 92 | 148 | 234 | 4.30e-21 | 86.7 |
| Msa0356740 | AT5G63370.3 | 49.451 | 91 | 38 | 2 | 6 | 92 | 148 | 234 | 4.30e-21 | 86.7 |
| Msa0356740 | AT1G18670.2 | 63.889 | 72 | 24 | 2 | 23 | 93 | 129 | 199 | 1.51e-19 | 82.4 |
| Msa0356740 | AT1G18670.3 | 63.889 | 72 | 24 | 2 | 23 | 93 | 129 | 199 | 2.11e-19 | 82.0 |
| Msa0356740 | AT1G18670.1 | 63.889 | 72 | 24 | 2 | 23 | 93 | 129 | 199 | 2.15e-19 | 82.0 |
| Msa0356740 | AT1G33770.1 | 56.000 | 75 | 31 | 2 | 20 | 93 | 136 | 209 | 9.40e-19 | 80.1 |
| Msa0356740 | AT3G05050.3 | 57.333 | 75 | 30 | 2 | 20 | 93 | 133 | 206 | 2.45e-18 | 79.0 |
| Msa0356740 | AT3G05050.2 | 57.333 | 75 | 30 | 2 | 20 | 93 | 133 | 206 | 2.45e-18 | 79.0 |
| Msa0356740 | AT3G05050.1 | 57.333 | 75 | 30 | 2 | 20 | 93 | 133 | 206 | 2.45e-18 | 79.0 |
| Msa0356740 | AT1G76540.1 | 53.521 | 71 | 32 | 1 | 21 | 90 | 10 | 80 | 8.61e-18 | 76.6 |
| Msa0356740 | AT1G71530.1 | 54.545 | 77 | 29 | 2 | 20 | 93 | 142 | 215 | 1.07e-17 | 77.0 |
| Msa0356740 | AT1G57700.1 | 54.667 | 75 | 32 | 2 | 20 | 93 | 141 | 214 | 1.30e-17 | 77.0 |
| Msa0356740 | AT5G39420.1 | 53.521 | 71 | 33 | 0 | 23 | 93 | 103 | 173 | 2.25e-17 | 76.3 |
| Msa0356740 | AT4G10010.2 | 53.247 | 77 | 30 | 2 | 20 | 93 | 151 | 224 | 2.38e-17 | 76.3 |
| Msa0356740 | AT1G74330.3 | 58.333 | 72 | 28 | 2 | 23 | 93 | 119 | 189 | 2.63e-17 | 76.3 |
| Msa0356740 | AT1G74330.1 | 58.333 | 72 | 28 | 2 | 23 | 93 | 119 | 189 | 2.64e-17 | 76.3 |
| Msa0356740 | AT1G74330.2 | 58.333 | 72 | 28 | 2 | 23 | 93 | 119 | 189 | 3.30e-17 | 75.9 |
| Msa0356740 | AT1G66750.1 | 47.297 | 74 | 39 | 0 | 14 | 87 | 2 | 75 | 3.31e-17 | 75.5 |
| Msa0356740 | AT1G71530.4 | 54.545 | 77 | 29 | 2 | 20 | 93 | 142 | 215 | 3.40e-17 | 75.5 |
| Msa0356740 | AT5G64960.2 | 87.500 | 40 | 5 | 0 | 65 | 104 | 13 | 52 | 4.04e-17 | 75.5 |
| Msa0356740 | AT1G71530.3 | 54.545 | 77 | 29 | 2 | 20 | 93 | 142 | 215 | 4.27e-17 | 75.5 |
| Msa0356740 | AT1G71530.2 | 54.545 | 77 | 29 | 2 | 20 | 93 | 142 | 215 | 6.36e-17 | 74.7 |
| Msa0356740 | AT5G50860.2 | 53.333 | 75 | 33 | 2 | 20 | 93 | 109 | 182 | 1.12e-16 | 74.3 |
| Msa0356740 | AT1G53050.2 | 54.667 | 75 | 32 | 2 | 20 | 93 | 129 | 202 | 1.52e-16 | 73.9 |
| Msa0356740 | AT1G53050.1 | 54.667 | 75 | 32 | 2 | 20 | 93 | 129 | 202 | 1.52e-16 | 73.9 |
| Msa0356740 | AT5G50860.1 | 53.333 | 75 | 33 | 2 | 20 | 93 | 109 | 182 | 2.21e-16 | 73.6 |
| Msa0356740 | AT1G54610.1 | 53.333 | 75 | 33 | 2 | 20 | 93 | 113 | 186 | 2.27e-16 | 73.6 |
| Msa0356740 | AT1G54610.3 | 53.333 | 75 | 33 | 2 | 20 | 93 | 113 | 186 | 2.27e-16 | 73.6 |
| Msa0356740 | AT1G54610.2 | 53.333 | 75 | 33 | 2 | 20 | 93 | 113 | 186 | 2.27e-16 | 73.6 |
| Msa0356740 | AT1G09600.1 | 51.351 | 74 | 36 | 0 | 20 | 93 | 158 | 231 | 2.58e-16 | 73.2 |
| Msa0356740 | AT1G20930.1 | 50.704 | 71 | 34 | 1 | 21 | 90 | 12 | 82 | 3.28e-16 | 72.4 |
| Msa0356740 | AT1G73690.1 | 48.529 | 68 | 35 | 0 | 20 | 87 | 6 | 73 | 8.57e-16 | 71.6 |
| Msa0356740 | AT1G18040.1 | 46.575 | 73 | 39 | 0 | 15 | 87 | 2 | 74 | 1.32e-15 | 70.9 |
| Msa0356740 | AT1G03740.2 | 48.684 | 76 | 37 | 2 | 20 | 94 | 208 | 282 | 2.29e-15 | 70.5 |
| Msa0356740 | AT1G03740.1 | 48.684 | 76 | 37 | 2 | 20 | 94 | 208 | 282 | 2.51e-15 | 70.5 |
| Msa0356740 | AT2G38620.2 | 44.706 | 85 | 37 | 1 | 25 | 99 | 4 | 88 | 4.57e-15 | 69.3 |
| Msa0356740 | AT2G38620.3 | 44.706 | 85 | 37 | 1 | 25 | 99 | 4 | 88 | 5.13e-15 | 68.6 |
| Msa0356740 | AT2G38620.1 | 44.706 | 85 | 37 | 1 | 25 | 99 | 4 | 88 | 5.13e-15 | 68.6 |
| Msa0356740 | AT3G54180.1 | 58.182 | 55 | 23 | 0 | 25 | 79 | 4 | 58 | 3.94e-14 | 66.6 |
| Msa0356740 | AT3G01085.3 | 51.429 | 70 | 32 | 2 | 25 | 93 | 115 | 183 | 8.15e-14 | 66.2 |
| Msa0356740 | AT3G01085.1 | 51.429 | 70 | 32 | 2 | 25 | 93 | 115 | 183 | 8.39e-14 | 66.2 |
| Msa0356740 | AT3G01085.2 | 51.429 | 70 | 32 | 2 | 25 | 93 | 115 | 183 | 8.39e-14 | 66.2 |
| Msa0356740 | AT5G44290.6 | 45.333 | 75 | 39 | 2 | 20 | 93 | 132 | 205 | 9.43e-14 | 65.9 |
| Msa0356740 | AT5G44290.7 | 45.333 | 75 | 39 | 2 | 20 | 93 | 132 | 205 | 1.32e-13 | 65.5 |
| Msa0356740 | AT5G44290.2 | 45.333 | 75 | 39 | 2 | 20 | 93 | 132 | 205 | 1.89e-13 | 65.1 |
| Msa0356740 | AT5G44290.5 | 45.333 | 75 | 39 | 2 | 20 | 93 | 132 | 205 | 1.89e-13 | 65.1 |
| Msa0356740 | AT5G44290.4 | 45.333 | 75 | 39 | 2 | 20 | 93 | 132 | 205 | 1.89e-13 | 65.1 |
| Msa0356740 | AT5G44290.1 | 45.333 | 75 | 39 | 2 | 20 | 93 | 132 | 205 | 1.89e-13 | 65.1 |
| Msa0356740 | AT5G44290.3 | 45.333 | 75 | 39 | 2 | 20 | 93 | 132 | 205 | 1.89e-13 | 65.1 |
| Msa0356740 | AT4G22940.1 | 48.101 | 79 | 35 | 3 | 14 | 91 | 96 | 169 | 8.82e-12 | 60.5 |
| Msa0356740 | AT4G22940.2 | 48.193 | 83 | 37 | 3 | 7 | 88 | 89 | 166 | 9.86e-12 | 60.1 |
Find 34 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATCGGCGAAGGCACTTA+TGG | 0.185430 | 3_1:+36773621 | Msa0356740:CDS |
| TACTTGCAGTATGGTTTATA+TGG | 0.207853 | 3_1:+36773718 | Msa0356740:intron |
| TGAAAATGTAATCAAGTTAA+AGG | 0.254582 | 3_1:+36773956 | Msa0356740:CDS |
| GGAATCCATGGGATATGTTT+AGG | 0.279098 | 3_1:+36773368 | Msa0356740:five_prime_UTR |
| ATTTCACGTATAGCAGTAAT+AGG | 0.291287 | 3_1:-36773909 | None:intergenic |
| ATCGATCAATCATCAATTCT+AGG | 0.324139 | 3_1:+36773488 | Msa0356740:five_prime_UTR |
| GAATCCATGGGATATGTTTA+GGG | 0.404527 | 3_1:+36773369 | Msa0356740:five_prime_UTR |
| GGGTTTATTGAGTGAGTTTG+TGG | 0.417115 | 3_1:+36773509 | Msa0356740:five_prime_UTR |
| ATGAATATATGTGGAATCCA+TGG | 0.429338 | 3_1:+36773356 | Msa0356740:five_prime_UTR |
| TATAGGTAAGATTGAATTGA+AGG | 0.436009 | 3_1:+36773421 | Msa0356740:five_prime_UTR |
| TTTGAGAAACTCGAACAAAT+CGG | 0.450626 | 3_1:+36773606 | Msa0356740:CDS |
| AAATCGGCGAAGGCACTTAT+GGG | 0.452605 | 3_1:+36773622 | Msa0356740:CDS |
| GTAATGACAATGGCGGGTCC+AGG | 0.454950 | 3_1:+36773531 | Msa0356740:exon |
| AAGGAAATCGTGACATCGCC+AGG | 0.468018 | 3_1:+36773975 | Msa0356740:CDS |
| ATGGCTCGAGAGATCGAAAC+TGG | 0.468440 | 3_1:+36773737 | Msa0356740:CDS |
| TCGATCACGTTCAATTGCCC+TGG | 0.481036 | 3_1:-36773549 | None:intergenic |
| TCGATCAATCATCAATTCTA+GGG | 0.502054 | 3_1:+36773489 | Msa0356740:five_prime_UTR |
| GTATGGATAATGAAAGAGAA+GGG | 0.512036 | 3_1:+36773786 | Msa0356740:CDS |
| AAAGATGATCAAGGAAGGCC+AGG | 0.518923 | 3_1:+36774005 | Msa0356740:CDS |
| TGCTCTCAAGAAAATACGTA+TGG | 0.537503 | 3_1:+36773769 | Msa0356740:CDS |
| GATGATTGATCGATCAATGA+TGG | 0.556063 | 3_1:-36773479 | None:intergenic |
| CGTATGGATAATGAAAGAGA+AGG | 0.557605 | 3_1:+36773785 | Msa0356740:CDS |
| ATTGATCGATCAATGATGGA+TGG | 0.575260 | 3_1:-36773475 | None:intergenic |
| TAATGACAATGGCGGGTCCA+GGG | 0.590746 | 3_1:+36773532 | Msa0356740:exon |
| TGAATATATGTGGAATCCAT+GGG | 0.599937 | 3_1:+36773357 | Msa0356740:five_prime_UTR |
| TTGATCGATCAATGATGGAT+GGG | 0.610615 | 3_1:-36773474 | None:intergenic |
| TCTTCCCTAAACATATCCCA+TGG | 0.615597 | 3_1:-36773373 | None:intergenic |
| TTTGTGGTAATGACAATGGC+GGG | 0.638401 | 3_1:+36773525 | Msa0356740:exon |
| TATGGATAATGAAAGAGAAG+GGG | 0.649789 | 3_1:+36773787 | Msa0356740:CDS |
| AAACTCGAACAAATCGGCGA+AGG | 0.657326 | 3_1:+36773612 | Msa0356740:CDS |
| ACGCTACGAGATCCACGCGA+AGG | 0.686881 | 3_1:-36773576 | None:intergenic |
| GTGATCGAATCACCTTCGCG+TGG | 0.695133 | 3_1:+36773564 | Msa0356740:CDS |
| TGAGTTTGTGGTAATGACAA+TGG | 0.701884 | 3_1:+36773521 | Msa0356740:exon |
| GTTTGTGGTAATGACAATGG+CGG | 0.759832 | 3_1:+36773524 | Msa0356740:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAATGAATATATG+TGG | + | chr3_1:36773347-36773366 | Msa0356740:five_prime_UTR | 10.0% |
| !!! | TACTATATTTTTTATTTTTG+AGG | - | chr3_1:36773403-36773422 | None:intergenic | 10.0% |
| !! | TGAAAATGTAATCAAGTTAA+AGG | + | chr3_1:36773956-36773975 | Msa0356740:CDS | 20.0% |
| ! | TATAGGTAAGATTGAATTGA+AGG | + | chr3_1:36773421-36773440 | Msa0356740:five_prime_UTR | 25.0% |
| !!! | GTTTTCTCTTTGATTTTGTT+GGG | - | chr3_1:36773455-36773474 | None:intergenic | 25.0% |
| ! | AGAAGAATTGAATGAAGAAA+AGG | - | chr3_1:36773663-36773682 | None:intergenic | 25.0% |
| !!! | ATGTTTTTATACTTGCAGTA+TGG | + | chr3_1:36773709-36773728 | Msa0356740:intron | 25.0% |
| ! | AATTACACATAATCACAGAT+AGG | - | chr3_1:36773849-36773868 | None:intergenic | 25.0% |
| ATGAATATATGTGGAATCCA+TGG | + | chr3_1:36773356-36773375 | Msa0356740:five_prime_UTR | 30.0% | |
| TGAATATATGTGGAATCCAT+GGG | + | chr3_1:36773357-36773376 | Msa0356740:five_prime_UTR | 30.0% | |
| !! | GGTTTTCTCTTTGATTTTGT+TGG | - | chr3_1:36773456-36773475 | None:intergenic | 30.0% |
| ATCGATCAATCATCAATTCT+AGG | + | chr3_1:36773488-36773507 | Msa0356740:five_prime_UTR | 30.0% | |
| TCGATCAATCATCAATTCTA+GGG | + | chr3_1:36773489-36773508 | Msa0356740:five_prime_UTR | 30.0% | |
| TTTGAGAAACTCGAACAAAT+CGG | + | chr3_1:36773606-36773625 | Msa0356740:CDS | 30.0% | |
| TACTTGCAGTATGGTTTATA+TGG | + | chr3_1:36773718-36773737 | Msa0356740:intron | 30.0% | |
| GTATGGATAATGAAAGAGAA+GGG | + | chr3_1:36773786-36773805 | Msa0356740:CDS | 30.0% | |
| TATGGATAATGAAAGAGAAG+GGG | + | chr3_1:36773787-36773806 | Msa0356740:CDS | 30.0% | |
| ATTTCACGTATAGCAGTAAT+AGG | - | chr3_1:36773912-36773931 | None:intergenic | 30.0% | |
| GAATCCATGGGATATGTTTA+GGG | + | chr3_1:36773369-36773388 | Msa0356740:five_prime_UTR | 35.0% | |
| !! | CTCTTTGATTTTGTTGGGTT+AGG | - | chr3_1:36773450-36773469 | None:intergenic | 35.0% |
| !! | TTGATCGATCAATGATGGAT+GGG | - | chr3_1:36773477-36773496 | None:intergenic | 35.0% |
| ! | ATTGATCGATCAATGATGGA+TGG | - | chr3_1:36773478-36773497 | None:intergenic | 35.0% |
| GATGATTGATCGATCAATGA+TGG | - | chr3_1:36773482-36773501 | None:intergenic | 35.0% | |
| ! | TGAGTTTGTGGTAATGACAA+TGG | + | chr3_1:36773521-36773540 | Msa0356740:exon | 35.0% |
| TGCTCTCAAGAAAATACGTA+TGG | + | chr3_1:36773769-36773788 | Msa0356740:CDS | 35.0% | |
| CGTATGGATAATGAAAGAGA+AGG | + | chr3_1:36773785-36773804 | Msa0356740:CDS | 35.0% | |
| !! | TTCCTTGATCATCTTTTTCG+GGG | - | chr3_1:36774001-36774020 | None:intergenic | 35.0% |
| ! | CTTCCTTGATCATCTTTTTC+GGG | - | chr3_1:36774002-36774021 | None:intergenic | 35.0% |
| ! | CCTTCCTTGATCATCTTTTT+CGG | - | chr3_1:36774003-36774022 | None:intergenic | 35.0% |
| GGAATCCATGGGATATGTTT+AGG | + | chr3_1:36773368-36773387 | Msa0356740:five_prime_UTR | 40.0% | |
| TCTTCCCTAAACATATCCCA+TGG | - | chr3_1:36773376-36773395 | None:intergenic | 40.0% | |
| GGGTTTATTGAGTGAGTTTG+TGG | + | chr3_1:36773509-36773528 | Msa0356740:five_prime_UTR | 40.0% | |
| ! | GTTTGTGGTAATGACAATGG+CGG | + | chr3_1:36773524-36773543 | Msa0356740:exon | 40.0% |
| ! | TTTGTGGTAATGACAATGGC+GGG | + | chr3_1:36773525-36773544 | Msa0356740:exon | 40.0% |
| CCGAAAAAGATGATCAAGGA+AGG | + | chr3_1:36774000-36774019 | Msa0356740:CDS | 40.0% | |
| AAACTCGAACAAATCGGCGA+AGG | + | chr3_1:36773612-36773631 | Msa0356740:CDS | 45.0% | |
| !! | AAATCGGCGAAGGCACTTAT+GGG | + | chr3_1:36773622-36773641 | Msa0356740:CDS | 45.0% |
| AAAGATGATCAAGGAAGGCC+AGG | + | chr3_1:36774005-36774024 | Msa0356740:CDS | 45.0% | |
| !! | AAAAATAAAAAATATAGTAT+AGG | + | chr3_1:36773404-36773423 | Msa0356740:five_prime_UTR | 5.0% |
| !! | TAATGACAATGGCGGGTCCA+GGG | + | chr3_1:36773532-36773551 | Msa0356740:exon | 50.0% |
| TCGATCACGTTCAATTGCCC+TGG | - | chr3_1:36773552-36773571 | None:intergenic | 50.0% | |
| !! | CAAATCGGCGAAGGCACTTA+TGG | + | chr3_1:36773621-36773640 | Msa0356740:CDS | 50.0% |
| ATGGCTCGAGAGATCGAAAC+TGG | + | chr3_1:36773737-36773756 | Msa0356740:CDS | 50.0% | |
| AAGGAAATCGTGACATCGCC+AGG | + | chr3_1:36773975-36773994 | Msa0356740:CDS | 50.0% | |
| !!! | TGATCATCTTTTTCGGGGCC+TGG | - | chr3_1:36773996-36774015 | None:intergenic | 50.0% |
| GGCCCCGAAAAAGATGATCA+AGG | + | chr3_1:36773996-36774015 | Msa0356740:CDS | 50.0% | |
| !! | GTAATGACAATGGCGGGTCC+AGG | + | chr3_1:36773531-36773550 | Msa0356740:exon | 55.0% |
| GTGATCGAATCACCTTCGCG+TGG | + | chr3_1:36773564-36773583 | Msa0356740:CDS | 55.0% | |
| ACGCTACGAGATCCACGCGA+AGG | - | chr3_1:36773579-36773598 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 36773290 | 36774028 | 36773290 | ID=Msa0356740;Name=Msa0356740 |
| chr3_1 | mRNA | 36773290 | 36774028 | 36773290 | ID=Msa0356740-mRNA-1;Parent=Msa0356740;Name=Msa0356740-mRNA-1;_AED=0.08;_eAED=0.08;_QI=244|1|0.66|1|1|0.66|3|0|105 |
| chr3_1 | exon | 36773290 | 36773643 | 36773290 | ID=Msa0356740-mRNA-1:exon:6702;Parent=Msa0356740-mRNA-1 |
| chr3_1 | exon | 36773727 | 36773808 | 36773727 | ID=Msa0356740-mRNA-1:exon:6703;Parent=Msa0356740-mRNA-1 |
| chr3_1 | exon | 36773906 | 36774028 | 36773906 | ID=Msa0356740-mRNA-1:exon:6704;Parent=Msa0356740-mRNA-1 |
| chr3_1 | five_prime_UTR | 36773290 | 36773533 | 36773290 | ID=Msa0356740-mRNA-1:five_prime_utr;Parent=Msa0356740-mRNA-1 |
| chr3_1 | CDS | 36773534 | 36773643 | 36773534 | ID=Msa0356740-mRNA-1:cds;Parent=Msa0356740-mRNA-1 |
| chr3_1 | CDS | 36773727 | 36773808 | 36773727 | ID=Msa0356740-mRNA-1:cds;Parent=Msa0356740-mRNA-1 |
| chr3_1 | CDS | 36773906 | 36774028 | 36773906 | ID=Msa0356740-mRNA-1:cds;Parent=Msa0356740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
