AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0357000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357000 MtrunA17_Chr3g0093811 86.415 265 16 3 44 299 14 267 5.73e-155 433
Msa0357000 MtrunA17_Chr6g0452271 37.176 347 159 12 1 299 1 336 1.39e-56 185
Msa0357000 MtrunA17_Chr3g0103281 59.854 137 51 4 1 135 1 135 9.52e-48 162
Msa0357000 MtrunA17_Chr7g0217741 53.488 129 58 2 1 128 1 128 1.35e-40 143
Msa0357000 MtrunA17_Chr2g0281071 47.287 129 67 1 1 128 1 129 2.61e-40 143
Msa0357000 MtrunA17_Chr4g0048511 47.015 134 70 1 1 133 1 134 8.23e-40 142
Msa0357000 MtrunA17_Chr1g0193371 50.000 136 66 2 1 135 1 135 9.98e-39 140
Msa0357000 MtrunA17_Chr4g0042671 44.318 176 86 4 1 165 1 175 1.42e-38 140
Msa0357000 MtrunA17_Chr1g0193801 50.376 133 64 2 1 132 1 132 2.50e-38 139
Msa0357000 MtrunA17_Chr1g0211161 49.231 130 65 1 1 129 1 130 3.40e-38 134
Msa0357000 MtrunA17_Chr7g0270891 49.624 133 65 2 1 132 1 132 5.50e-38 137
Msa0357000 MtrunA17_Chr4g0057031 49.242 132 65 2 1 131 1 131 7.40e-38 135
Msa0357000 MtrunA17_Chr6g0453471 50.388 129 62 2 1 128 1 128 9.48e-38 137
Msa0357000 MtrunA17_Chr3g0117091 50.806 124 60 1 7 129 6 129 2.77e-37 135
Msa0357000 MtrunA17_Chr4g0039971 48.062 129 66 1 1 128 1 129 2.07e-36 133
Msa0357000 MtrunA17_Chr5g0410961 48.062 129 65 2 1 128 1 128 2.95e-36 132
Msa0357000 MtrunA17_Chr3g0115821 46.667 135 70 2 1 134 1 134 3.99e-36 132
Msa0357000 MtrunA17_Chr5g0395281 35.945 217 120 5 11 225 10 209 4.97e-36 131
Msa0357000 MtrunA17_Chr4g0037141 45.113 133 71 2 1 132 1 132 6.40e-36 130
Msa0357000 MtrunA17_Chr4g0058631 48.485 132 66 2 1 131 1 131 9.48e-36 132
Msa0357000 MtrunA17_Chr5g0434571 47.328 131 67 2 1 130 37 166 2.54e-35 130
Msa0357000 MtrunA17_Chr7g0228891 45.455 154 79 3 1 150 1 153 3.02e-35 128
Msa0357000 MtrunA17_Chr3g0110351 47.059 136 70 2 1 135 1 135 3.37e-35 129
Msa0357000 MtrunA17_Chr2g0323411 44.961 129 69 2 1 128 1 128 3.99e-35 129
Msa0357000 MtrunA17_Chr8g0385321 45.865 133 70 2 1 132 1 132 1.17e-34 127
Msa0357000 MtrunA17_Chr5g0435101 41.935 155 84 3 2 155 1 150 2.06e-34 124
Msa0357000 MtrunA17_Chr4g0028311 52.308 130 57 5 1 127 1 128 4.37e-34 126
Msa0357000 MtrunA17_Chr5g0417821 47.899 119 61 1 13 130 7 125 4.55e-34 125
Msa0357000 MtrunA17_Chr3g0131121 45.038 131 70 2 1 130 1 130 5.66e-34 125
Msa0357000 MtrunA17_Chr2g0309911 47.200 125 65 1 7 130 5 129 6.52e-34 125
Msa0357000 MtrunA17_Chr8g0349261 46.212 132 69 2 1 130 1 132 8.00e-34 125
Msa0357000 MtrunA17_Chr4g0044421 45.238 126 68 1 2 126 1 126 2.23e-33 121
Msa0357000 MtrunA17_Chr7g0271241 50.758 132 63 2 1 131 1 131 3.10e-33 125
Msa0357000 MtrunA17_Chr3g0135311 52.542 118 53 3 1 116 1 117 6.57e-33 124
Msa0357000 MtrunA17_Chr1g0151941 54.622 119 49 5 1 116 1 117 7.77e-33 121
Msa0357000 MtrunA17_Chr4g0022901 46.552 116 61 1 1 115 1 116 9.41e-33 121
Msa0357000 MtrunA17_Chr3g0121241 45.968 124 66 1 7 129 36 159 9.46e-33 122
Msa0357000 MtrunA17_Chr5g0400821 51.695 118 54 3 1 116 1 117 9.95e-33 122
Msa0357000 MtrunA17_Chr4g0022931 45.082 122 66 1 1 121 1 122 1.39e-32 121
Msa0357000 MtrunA17_Chr1g0152011 50.847 118 55 3 1 116 1 117 3.80e-32 121
Msa0357000 MtrunA17_Chr1g0187761 49.580 119 58 2 1 118 1 118 6.66e-32 119
Msa0357000 MtrunA17_Chr1g0203411 47.899 119 60 2 1 118 1 118 8.37e-32 119
Msa0357000 MtrunA17_Chr4g0022911 45.690 116 62 1 1 115 1 116 4.26e-31 117
Msa0357000 MtrunA17_Chr1g0167691 47.009 117 60 2 1 116 1 116 4.42e-31 117
Msa0357000 MtrunA17_Chr7g0264641 51.240 121 56 3 1 119 1 120 5.25e-31 117
Msa0357000 MtrunA17_Chr4g0068061 47.863 117 59 2 1 116 1 116 5.33e-31 118
Msa0357000 MtrunA17_Chr1g0167661 46.154 117 61 2 1 116 1 116 7.93e-31 116
Msa0357000 MtrunA17_Chr8g0342541 45.390 141 74 3 1 140 1 139 2.19e-30 117
Msa0357000 MtrunA17_Chr7g0247131 53.846 91 42 0 44 134 10 100 2.76e-30 115
Msa0357000 MtrunA17_Chr4g0070641 45.000 120 64 2 1 119 1 119 7.59e-30 111
Msa0357000 MtrunA17_Chr8g0342521 46.774 124 64 2 1 123 1 123 1.38e-29 115
Msa0357000 MtrunA17_Chr7g0275911 46.154 117 61 2 1 116 1 116 1.47e-29 112
Msa0357000 MtrunA17_Chr8g0387421 46.429 112 59 1 6 116 5 116 1.51e-29 114
Msa0357000 MtrunA17_Chr4g0070611 45.000 120 64 2 1 119 1 119 2.09e-29 113
Msa0357000 MtrunA17_Chr2g0323351 42.735 117 65 2 1 116 1 116 3.82e-29 111
Msa0357000 MtrunA17_Chr2g0330041 44.361 133 72 2 1 132 1 132 4.19e-29 114
Msa0357000 MtrunA17_Chr3g0092401 47.500 120 61 2 1 119 2 120 7.93e-29 112
Msa0357000 MtrunA17_Chr4g0054391 49.550 111 53 3 1 109 1 110 9.44e-29 111
Msa0357000 MtrunA17_Chr7g0217221 47.967 123 60 3 1 120 1 122 1.19e-28 110
Msa0357000 MtrunA17_Chr2g0327351 49.107 112 54 3 1 110 1 111 1.53e-28 111
Msa0357000 MtrunA17_Chr8g0346561 44.538 119 64 2 1 118 1 118 1.63e-28 111
Msa0357000 MtrunA17_Chr7g0274581 46.218 119 62 2 1 118 1 118 3.17e-28 108
Msa0357000 MtrunA17_Chr7g0254411 46.032 126 64 3 1 123 1 125 4.93e-28 110
Msa0357000 MtrunA17_Chr7g0261281 44.538 119 64 2 1 118 1 118 5.79e-28 109
Msa0357000 MtrunA17_Chr1g0203441 44.444 117 63 2 14 129 14 129 7.22e-28 108
Msa0357000 MtrunA17_Chr4g0060721 47.059 119 61 2 1 118 2 119 1.07e-27 109
Msa0357000 MtrunA17_Chr5g0397231 46.226 106 56 1 6 110 5 110 1.39e-27 109
Msa0357000 MtrunA17_Chr4g0022891 43.860 114 62 2 1 113 1 113 2.03e-27 107
Msa0357000 MtrunA17_Chr4g0072751 49.107 112 54 3 1 110 1 111 2.51e-27 108
Msa0357000 MtrunA17_Chr3g0080861 44.348 115 63 1 2 115 26 140 3.54e-27 110
Msa0357000 MtrunA17_Chr6g0487491 48.000 125 54 4 1 115 1 124 5.07e-27 106
Msa0357000 MtrunA17_Chr6g0453211 47.748 111 56 2 1 110 1 110 1.48e-26 106
Msa0357000 MtrunA17_Chr1g0194951 45.299 117 62 2 1 116 1 116 1.60e-26 107
Msa0357000 MtrunA17_Chr1g0194301 44.262 122 67 1 2 122 22 143 2.62e-26 104
Msa0357000 MtrunA17_Chr8g0342481 39.474 190 108 7 1 188 1 185 2.80e-26 107
Msa0357000 MtrunA17_Chr2g0311221 46.789 109 56 2 3 110 5 112 2.95e-26 105
Msa0357000 MtrunA17_Chr6g0470971 47.170 106 55 1 11 115 12 117 3.40e-26 104
Msa0357000 MtrunA17_Chr4g0055981 34.884 172 97 4 13 183 55 212 3.60e-26 103
Msa0357000 MtrunA17_Chr3g0099131 44.860 107 58 1 13 118 41 147 4.58e-26 107
Msa0357000 MtrunA17_Chr1g0168661 48.571 105 53 1 12 115 20 124 8.13e-26 103
Msa0357000 MtrunA17_Chr1g0209661 43.243 111 62 1 13 122 27 137 9.33e-26 103
Msa0357000 MtrunA17_Chr8g0354661 43.519 108 60 1 9 115 33 140 1.23e-25 106
Msa0357000 MtrunA17_Chr2g0328771 41.667 108 62 1 13 119 20 127 2.46e-25 103
Msa0357000 MtrunA17_Chr7g0228231 41.026 117 68 1 3 118 4 120 6.11e-25 99.4
Msa0357000 MtrunA17_Chr4g0032401 39.344 122 73 1 2 122 6 127 8.30e-25 101
Msa0357000 MtrunA17_Chr1g0192411 43.636 110 60 2 13 121 12 120 2.13e-24 101
Msa0357000 MtrunA17_Chr1g0186061 45.631 103 55 1 14 115 21 123 2.62e-24 99.0
Msa0357000 MtrunA17_Chr6g0450101 42.593 108 61 1 13 119 14 121 3.33e-24 97.4
Msa0357000 MtrunA17_Chr1g0194291 38.168 131 79 2 4 133 12 141 4.91e-24 98.6
Msa0357000 MtrunA17_Chr3g0088461 41.026 117 68 1 1 116 10 126 6.14e-24 99.8
Msa0357000 MtrunA17_Chr8g0343831 42.991 107 60 1 13 118 8 114 6.56e-24 97.8
Msa0357000 MtrunA17_Chr5g0434831 42.727 110 62 1 8 116 2 111 9.54e-24 95.9
Msa0357000 MtrunA17_Chr4g0022881 40.000 115 67 2 1 114 1 114 1.03e-23 96.7
Msa0357000 MtrunA17_Chr5g0434911 41.284 109 63 1 9 116 17 125 2.09e-23 97.1
Msa0357000 MtrunA17_Chr5g0434841 40.517 116 68 1 2 116 9 124 2.80e-23 97.4
Msa0357000 MtrunA17_Chr1g0154031 44.231 104 57 1 13 115 76 179 6.52e-23 97.8
Msa0357000 MtrunA17_Chr8g0360111 42.453 106 60 1 8 112 20 125 8.84e-23 95.1
Msa0357000 MtrunA17_Chr1g0180391 42.857 105 59 1 13 116 19 123 9.01e-23 94.4
Msa0357000 MtrunA17_Chr5g0434931 40.952 105 61 1 13 116 35 139 9.95e-23 95.1
Msa0357000 MtrunA17_Chr5g0441131 33.333 162 72 5 14 140 10 170 4.16e-22 91.3
Msa0357000 MtrunA17_Chr5g0401731 32.381 210 121 7 10 202 3 208 5.80e-22 94.0
Msa0357000 MtrunA17_Chr2g0327821 43.269 104 58 1 13 115 6 109 7.22e-22 92.0
Msa0357000 MtrunA17_Chr4g0030881 41.739 115 59 2 12 118 6 120 8.44e-22 92.4
Msa0357000 MtrunA17_Chr3g0133601 39.062 128 67 3 15 141 37 154 1.92e-21 90.5
Msa0357000 MtrunA17_Chr7g0269831 43.590 117 64 2 1 116 1 116 2.14e-21 92.8
Msa0357000 MtrunA17_Chr5g0440781 38.393 112 66 3 14 123 13 123 3.21e-21 89.0
Msa0357000 MtrunA17_Chr7g0240821 44.118 102 57 0 21 122 10 111 4.43e-21 89.7
Msa0357000 MtrunA17_Chr2g0322521 43.269 104 58 1 13 115 29 132 7.34e-21 91.7
Msa0357000 MtrunA17_Chr7g0228991 40.952 105 61 1 13 116 29 133 8.88e-21 89.7
Msa0357000 MtrunA17_Chr4g0068921 41.270 126 72 2 5 129 16 140 9.86e-21 87.8
Msa0357000 MtrunA17_Chr7g0220341 41.121 107 60 2 13 116 25 131 1.61e-20 89.0
Msa0357000 MtrunA17_Chr5g0441141 38.393 112 66 3 14 123 13 123 1.66e-20 89.0
Msa0357000 MtrunA17_Chr5g0440761 38.393 112 66 3 14 123 13 123 1.73e-20 89.0
Msa0357000 MtrunA17_Chr2g0293911 41.525 118 67 2 13 129 24 140 1.82e-20 89.7
Msa0357000 MtrunA17_Chr4g0008551 42.636 129 63 7 15 141 38 157 4.81e-20 89.0
Msa0357000 MtrunA17_Chr6g0454921 41.346 104 60 1 21 124 22 124 3.43e-19 84.0
Msa0357000 MtrunA17_Chr7g0229101 54.286 70 32 0 44 113 4 73 3.57e-19 84.0
Msa0357000 MtrunA17_Chr8g0334881 38.532 109 64 3 13 119 10 117 1.60e-18 84.3
Msa0357000 MtrunA17_Chr5g0395231 46.154 104 35 4 78 162 5 106 2.72e-18 82.4
Msa0357000 MtrunA17_Chr7g0229131 49.315 73 37 0 44 116 4 76 5.29e-18 79.7
Msa0357000 MtrunA17_Chr4g0013361 40.385 104 60 2 13 114 10 113 5.96e-18 82.4
Msa0357000 MtrunA17_Chr5g0417621 39.286 112 64 4 9 118 128 237 6.89e-18 83.6
Msa0357000 MtrunA17_Chr6g0480581 35.294 136 78 5 12 145 1 128 8.92e-18 80.9
Msa0357000 MtrunA17_Chr5g0434901 53.030 66 31 0 48 113 9 74 9.28e-18 77.8
Msa0357000 MtrunA17_Chr4g0042501 38.532 109 63 4 12 118 102 208 2.35e-17 81.6
Msa0357000 MtrunA17_Chr4g0053431 47.143 70 37 0 48 117 38 107 2.89e-17 80.1
Msa0357000 MtrunA17_Chr3g0125801 41.228 114 63 4 4 115 5 116 7.33e-17 79.0
Msa0357000 MtrunA17_Chr5g0429661 32.479 117 77 2 3 118 110 225 7.69e-17 79.7
Msa0357000 MtrunA17_Chr4g0058991 31.034 116 80 0 3 118 197 312 4.77e-16 78.2
Msa0357000 MtrunA17_Chr2g0323321 37.634 93 55 3 1 92 1 91 7.89e-16 72.4
Msa0357000 MtrunA17_Chr5g0437321 36.364 110 68 2 4 112 8 116 1.78e-15 75.1
Msa0357000 MtrunA17_Chr3g0117511 33.333 105 68 2 15 118 183 286 1.96e-15 76.3
Msa0357000 MtrunA17_Chr7g0254261 41.748 103 56 4 15 115 89 189 4.32e-15 74.7
Msa0357000 MtrunA17_Chr2g0294811 39.785 93 54 2 1 92 1 92 5.74e-15 70.1
Msa0357000 MtrunA17_Chr4g0042611 40.449 89 51 2 1 88 1 88 9.51e-15 68.6
Msa0357000 MtrunA17_Chr3g0099141 39.024 82 49 1 13 93 40 121 1.20e-14 69.7
Msa0357000 MtrunA17_Chr7g0238631 38.889 108 64 2 10 116 108 214 1.22e-14 73.9
Msa0357000 MtrunA17_Chr6g0460661 36.957 92 55 3 20 110 22 111 1.31e-14 70.5
Msa0357000 MtrunA17_Chr6g0460671 37.383 107 63 4 15 119 99 203 3.91e-14 72.0
Msa0357000 MtrunA17_Chr8g0342531 42.222 90 50 2 1 89 1 89 5.80e-14 68.6
Msa0357000 MtrunA17_Chr7g0228531 41.176 68 39 1 48 115 253 319 1.25e-13 70.9
Msa0357000 MtrunA17_Chr4g0042621 45.977 87 37 2 89 165 15 101 1.75e-13 69.7
Msa0357000 MtrunA17_Chr3g0139671 43.478 69 39 0 48 116 118 186 2.22e-13 70.5
Msa0357000 MtrunA17_Chr1g0157731 42.029 69 40 0 48 116 124 192 3.71e-13 70.1
Msa0357000 MtrunA17_Chr5g0395221 37.975 79 48 1 11 88 10 88 4.44e-13 63.9
Msa0357000 MtrunA17_Chr8g0342511 39.759 83 49 1 6 87 5 87 9.45e-13 63.5
Msa0357000 MtrunA17_Chr5g0434871 60.465 43 17 0 74 116 2 44 9.94e-13 62.4
Msa0357000 MtrunA17_Chr7g0228401 41.270 63 37 0 48 110 312 374 1.24e-12 68.2
Msa0357000 MtrunA17_Chr8g0342461 37.363 91 54 3 1 89 1 90 2.52e-12 63.5
Msa0357000 MtrunA17_Chr8g0342471 37.363 91 54 3 1 89 1 90 7.90e-12 62.0
Msa0357000 MtrunA17_Chr7g0228481 36.364 110 60 5 13 115 218 324 1.11e-11 65.1
Msa0357000 MtrunA17_Chr5g0397841 40.000 85 38 3 37 109 121 204 2.77e-11 63.9
Msa0357000 MtrunA17_Chr3g0145551 61.538 39 15 0 91 129 1 39 4.81e-11 58.2
Msa0357000 MtrunA17_Chr1g0177901 36.508 63 40 0 48 110 27 89 5.91e-11 61.2
Msa0357000 MtrunA17_Chr7g0233061 26.119 134 85 2 9 136 174 299 6.27e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357000 AT3G28470.1 40.483 331 144 12 1 295 1 314 1.01e-55 183
Msa0357000 AT1G18960.1 35.843 332 155 11 1 299 1 307 5.50e-48 162
Msa0357000 AT5G56110.1 59.124 137 52 4 1 135 1 135 1.89e-47 162
Msa0357000 AT4G21440.1 47.761 134 68 2 1 133 1 133 1.57e-39 142
Msa0357000 AT5G15310.4 51.938 129 60 2 1 128 1 128 3.17e-39 138
Msa0357000 AT4G17785.2 50.388 129 63 1 1 128 1 129 5.91e-39 140
Msa0357000 AT4G17785.1 50.388 129 63 1 1 128 1 129 8.15e-39 140
Msa0357000 AT3G01140.2 52.344 128 59 2 1 127 1 127 9.99e-39 139
Msa0357000 AT4G05100.1 47.287 129 67 1 1 128 1 129 1.05e-38 139
Msa0357000 AT5G15310.2 51.938 129 60 2 1 128 1 128 1.46e-38 138
Msa0357000 AT5G15310.1 51.938 129 60 2 1 128 1 128 1.80e-38 138
Msa0357000 AT1G57560.1 42.012 169 88 3 2 164 1 165 2.19e-38 138
Msa0357000 AT3G01140.1 52.344 128 59 2 1 127 44 170 2.47e-38 139
Msa0357000 AT1G57560.2 48.855 131 66 1 2 131 1 131 3.02e-38 136
Msa0357000 AT4G28110.1 48.062 129 65 2 1 128 1 128 3.98e-38 136
Msa0357000 AT1G18710.1 48.120 133 62 2 13 138 12 144 4.03e-38 136
Msa0357000 AT5G61420.2 48.800 125 63 1 7 130 6 130 7.92e-38 137
Msa0357000 AT5G07690.1 49.600 125 62 1 7 130 6 130 2.64e-37 135
Msa0357000 AT1G74430.1 51.282 117 56 1 13 128 12 128 3.70e-37 133
Msa0357000 AT5G10280.1 36.150 213 120 4 5 211 4 206 5.32e-37 135
Msa0357000 AT4G34990.1 47.727 132 67 2 1 131 1 131 5.82e-37 133
Msa0357000 AT5G65230.1 48.062 129 65 2 1 128 1 128 8.08e-37 134
Msa0357000 AT5G16770.4 48.837 129 64 2 1 128 1 128 8.70e-37 134
Msa0357000 AT5G16770.3 48.837 129 64 2 1 128 1 128 8.70e-37 134
Msa0357000 AT4G01680.3 48.120 133 67 2 1 132 1 132 9.51e-37 131
Msa0357000 AT5G26660.1 50.000 130 63 2 1 129 1 129 1.04e-36 134
Msa0357000 AT5G16770.1 48.837 129 64 2 1 128 1 128 1.18e-36 134
Msa0357000 AT5G16770.2 48.837 129 64 2 1 128 1 128 1.18e-36 134
Msa0357000 AT1G09540.1 49.624 133 65 2 1 132 1 132 1.91e-36 134
Msa0357000 AT1G18570.1 47.328 131 68 1 1 130 1 131 2.03e-36 134
Msa0357000 AT3G13540.1 49.219 128 64 1 3 129 13 140 2.11e-36 131
Msa0357000 AT4G01680.1 48.120 133 67 2 1 132 1 132 3.06e-36 132
Msa0357000 AT5G07700.1 50.420 119 58 1 13 130 12 130 3.12e-36 132
Msa0357000 AT5G07700.2 50.420 119 58 1 13 130 12 130 3.12e-36 132
Msa0357000 AT3G02940.2 48.062 129 65 2 1 128 1 128 3.63e-36 132
Msa0357000 AT5G60890.1 47.692 130 66 2 1 129 1 129 3.75e-36 131
Msa0357000 AT3G02940.1 48.062 129 65 2 1 128 1 128 4.19e-36 132
Msa0357000 AT3G02940.3 48.062 129 65 2 1 128 1 128 4.19e-36 132
Msa0357000 AT1G34670.1 47.407 135 69 2 1 134 1 134 5.25e-36 133
Msa0357000 AT1G66230.1 47.328 131 67 2 1 130 1 130 7.34e-36 130
Msa0357000 AT4G12350.1 45.588 136 72 2 1 135 1 135 2.70e-35 129
Msa0357000 AT5G54230.1 49.180 122 61 1 13 133 12 133 2.97e-35 130
Msa0357000 AT4G22680.1 45.455 132 70 2 1 131 1 131 1.58e-34 126
Msa0357000 AT4G38620.1 45.385 130 69 2 1 129 1 129 1.60e-34 127
Msa0357000 AT2G16720.1 46.094 128 67 2 1 127 1 127 3.90e-34 125
Msa0357000 AT5G16600.1 41.566 166 95 2 1 165 1 165 5.09e-34 127
Msa0357000 AT1G35515.1 47.244 127 65 2 1 126 1 126 1.80e-33 122
Msa0357000 AT1G74080.1 44.615 130 70 2 1 129 1 129 2.17e-33 125
Msa0357000 AT3G61250.1 45.385 130 69 2 1 129 1 129 2.64e-33 124
Msa0357000 AT5G14750.1 50.427 117 57 1 2 117 5 121 2.72e-33 121
Msa0357000 AT5G14340.1 45.865 133 70 2 1 132 13 144 5.41e-33 122
Msa0357000 AT4G01680.2 44.138 145 67 3 1 132 1 144 5.50e-33 124
Msa0357000 AT1G22640.1 44.531 128 69 2 1 127 1 127 6.23e-33 122
Msa0357000 AT4G09460.1 45.312 128 68 2 1 127 1 127 1.29e-32 120
Msa0357000 AT5G62320.1 43.165 139 71 2 1 131 1 139 1.55e-32 120
Msa0357000 AT4G37780.1 51.695 118 54 3 1 116 1 117 2.29e-32 122
Msa0357000 AT3G49690.1 51.695 118 54 3 1 116 1 117 3.46e-31 119
Msa0357000 AT5G40330.1 51.429 105 50 1 14 117 13 117 4.34e-31 116
Msa0357000 AT3G27920.1 49.091 110 55 1 8 116 9 118 8.54e-31 115
Msa0357000 AT3G12720.1 47.107 121 62 2 7 126 17 136 1.04e-30 117
Msa0357000 AT5G52600.1 44.275 131 63 2 8 128 7 137 1.58e-30 114
Msa0357000 AT5G23000.1 52.941 119 51 5 1 116 1 117 1.71e-30 117
Msa0357000 AT5G57620.1 50.000 118 56 3 1 116 1 117 2.01e-30 117
Msa0357000 AT2G36890.1 48.837 129 61 5 1 126 1 127 4.15e-30 115
Msa0357000 AT1G79180.1 50.427 117 56 2 3 118 5 120 7.92e-30 115
Msa0357000 AT2G36890.2 48.837 129 61 5 1 126 42 168 8.12e-30 115
Msa0357000 AT5G65790.1 49.153 118 57 3 1 116 1 117 1.08e-29 116
Msa0357000 AT3G23250.1 48.718 117 58 2 1 116 1 116 1.23e-29 114
Msa0357000 AT5G26660.2 54.839 93 42 0 37 129 6 98 1.24e-29 115
Msa0357000 AT1G16490.1 49.138 116 57 2 3 117 5 119 1.75e-29 113
Msa0357000 AT2G47460.1 44.030 134 73 2 1 133 1 133 3.43e-29 114
Msa0357000 AT4G26930.1 49.038 104 52 1 12 114 18 121 3.67e-29 115
Msa0357000 AT1G63910.1 42.742 124 70 1 6 128 5 128 4.06e-29 114
Msa0357000 AT3G47600.1 48.333 120 60 2 1 119 1 119 5.91e-29 113
Msa0357000 AT3G62610.1 47.863 117 59 2 1 116 1 116 8.00e-29 113
Msa0357000 AT5G62470.2 49.167 120 59 2 1 119 1 119 8.89e-29 113
Msa0357000 AT3G28910.1 47.154 123 63 2 1 122 1 122 9.68e-29 112
Msa0357000 AT5G55020.1 48.148 108 55 1 12 118 25 132 1.14e-28 115
Msa0357000 AT3G13890.2 47.863 117 59 2 1 116 1 116 1.47e-28 112
Msa0357000 AT2G31180.1 47.059 119 61 2 1 118 1 118 4.42e-28 109
Msa0357000 AT5G49330.1 47.009 117 60 2 1 116 1 116 4.44e-28 111
Msa0357000 AT1G56160.1 47.414 116 59 2 3 117 5 119 4.54e-28 110
Msa0357000 AT3G12820.1 46.957 115 60 1 3 116 4 118 7.18e-28 108
Msa0357000 AT1G06180.1 47.059 119 61 2 1 118 1 118 1.04e-27 108
Msa0357000 AT1G74650.1 48.333 120 60 2 1 119 1 119 1.26e-27 109
Msa0357000 AT5G35550.1 40.870 115 67 1 3 116 4 118 3.02e-27 107
Msa0357000 AT1G08810.1 47.059 119 61 2 1 118 1 118 4.83e-27 107
Msa0357000 AT5G62470.1 49.167 120 58 3 1 119 1 118 9.82e-27 107
Msa0357000 AT5G12870.1 42.735 117 66 1 4 119 9 125 9.85e-27 106
Msa0357000 AT3G11440.2 44.444 108 59 1 9 115 37 144 1.06e-26 109
Msa0357000 AT3G11440.3 44.444 108 59 1 9 115 37 144 2.66e-26 108
Msa0357000 AT3G11440.4 44.444 108 59 1 9 115 37 144 2.66e-26 108
Msa0357000 AT3G11440.1 44.444 108 59 1 9 115 37 144 2.66e-26 108
Msa0357000 AT2G32460.2 45.192 104 56 1 13 115 6 109 4.91e-26 107
Msa0357000 AT2G32460.1 45.192 104 56 1 13 115 18 121 4.92e-26 107
Msa0357000 AT2G47190.1 41.667 120 69 1 4 122 11 130 6.04e-26 103
Msa0357000 AT3G13890.1 44.444 126 59 3 1 116 1 125 1.12e-25 105
Msa0357000 AT5G06100.1 45.714 105 56 1 12 115 31 135 2.26e-25 105
Msa0357000 AT1G25340.1 40.476 126 74 1 3 127 8 133 3.38e-25 102
Msa0357000 AT3G01530.1 42.105 114 65 1 4 116 16 129 5.37e-25 99.8
Msa0357000 AT5G06100.5 45.714 105 56 1 12 115 31 135 5.88e-25 104
Msa0357000 AT5G06100.2 45.714 105 56 1 12 115 31 135 5.88e-25 104
Msa0357000 AT5G06100.3 45.714 105 56 1 12 115 31 135 5.88e-25 104
Msa0357000 AT5G06100.4 45.714 105 56 1 12 115 31 135 5.88e-25 104
Msa0357000 AT4G25560.1 43.103 116 62 2 1 115 1 113 7.60e-25 101
Msa0357000 AT1G48000.1 42.623 122 68 2 13 133 32 152 8.50e-25 100
Msa0357000 AT2G26960.1 41.803 122 66 3 4 121 8 128 1.23e-24 103
Msa0357000 AT1G68320.1 41.322 121 70 1 13 132 19 139 1.41e-24 100
Msa0357000 AT4G13480.1 47.619 105 54 1 12 115 5 109 3.68e-24 99.0
Msa0357000 AT1G79180.2 39.333 150 56 3 3 118 5 153 8.13e-24 99.4
Msa0357000 AT3G24310.1 46.602 103 54 1 14 115 19 121 1.48e-23 97.4
Msa0357000 AT3G08500.1 44.762 105 57 1 13 116 30 134 1.68e-23 99.0
Msa0357000 AT3G27810.1 42.056 107 61 1 13 118 20 126 2.46e-23 95.9
Msa0357000 AT5G40350.1 42.202 109 62 1 13 120 17 125 3.15e-23 95.5
Msa0357000 AT5G14750.3 56.410 78 31 1 40 117 13 87 3.81e-23 94.0
Msa0357000 AT1G66370.1 45.192 104 56 1 13 115 8 111 6.28e-23 95.5
Msa0357000 AT3G48920.1 40.952 105 61 1 14 117 19 123 8.46e-23 95.5
Msa0357000 AT1G71030.2 51.899 79 38 0 49 127 3 81 1.15e-22 92.8
Msa0357000 AT1G71030.1 51.899 79 38 0 49 127 17 95 1.48e-22 93.2
Msa0357000 AT5G59780.3 45.631 103 55 1 14 115 9 111 3.40e-22 93.2
Msa0357000 AT3G30210.1 42.718 103 58 1 13 114 27 129 3.57e-22 94.0
Msa0357000 AT5G35550.2 54.167 72 33 0 45 116 50 121 5.25e-22 93.2
Msa0357000 AT5G52260.1 44.660 103 56 1 14 115 13 115 5.83e-22 93.2
Msa0357000 AT3G46130.1 44.660 103 56 1 14 115 10 112 1.23e-21 92.0
Msa0357000 AT5G59780.2 49.438 89 40 1 27 115 7 90 2.36e-21 90.5
Msa0357000 AT3G53200.1 36.957 138 78 2 9 145 5 134 5.47e-21 90.1
Msa0357000 AT1G25340.2 38.095 126 72 2 3 127 8 128 1.22e-20 89.7
Msa0357000 AT3G06490.1 40.984 122 71 1 2 122 8 129 1.39e-20 90.5
Msa0357000 AT1G25340.3 38.095 126 72 2 3 127 8 128 2.10e-20 89.7
Msa0357000 AT3G47600.2 45.545 101 49 2 25 119 13 113 2.29e-20 89.7
Msa0357000 AT3G46130.4 53.425 73 34 0 43 115 18 90 4.29e-20 87.4
Msa0357000 AT3G46130.3 51.220 82 39 1 44 125 9 89 4.61e-20 87.0
Msa0357000 AT1G66380.1 46.154 104 55 1 13 115 8 111 8.02e-20 84.3
Msa0357000 AT2G26950.1 36.090 133 80 3 21 149 25 156 8.54e-20 89.0
Msa0357000 AT3G12820.2 56.522 69 30 0 48 116 2 70 9.41e-20 85.5
Msa0357000 AT5G49620.1 39.024 123 74 1 1 122 14 136 1.71e-19 87.0
Msa0357000 AT3G27810.2 50.000 74 37 0 45 118 4 77 1.73e-19 84.3
Msa0357000 AT1G22640.3 56.897 58 25 0 70 127 13 70 3.52e-19 84.0
Msa0357000 AT5G40350.2 50.000 76 38 0 45 120 5 80 3.69e-19 83.2
Msa0357000 AT1G26780.1 41.284 109 60 4 12 118 95 201 8.94e-19 84.7
Msa0357000 AT3G60460.1 40.741 108 62 2 9 114 7 114 1.36e-18 84.3
Msa0357000 AT1G26780.2 41.284 109 60 4 12 118 95 201 1.63e-18 85.1
Msa0357000 AT1G69560.1 33.758 157 96 5 1 155 93 243 1.85e-18 84.7
Msa0357000 AT1G69560.2 33.758 157 96 5 1 155 109 259 2.09e-18 84.7
Msa0357000 AT3G53200.2 41.837 98 49 1 43 140 7 96 2.59e-18 82.0
Msa0357000 AT2G23290.1 43.299 97 54 1 21 117 20 115 2.78e-18 84.0
Msa0357000 AT3G29020.1 38.532 109 63 4 12 118 62 168 5.37e-18 81.6
Msa0357000 AT1G56650.1 40.496 121 61 2 13 132 8 118 6.99e-18 81.6
Msa0357000 AT1G17950.1 41.509 106 58 4 12 115 2 105 1.16e-17 80.9
Msa0357000 AT1G66390.1 43.269 104 58 1 13 115 8 111 1.84e-17 80.5
Msa0357000 AT4G37260.1 33.939 165 94 5 4 166 2 153 1.91e-17 81.6
Msa0357000 AT3G29020.2 38.532 109 63 4 12 118 64 170 2.03e-17 81.3
Msa0357000 AT5G61420.1 64.000 50 18 0 81 130 2 51 3.93e-17 80.1
Msa0357000 AT5G67300.1 36.000 125 74 4 15 134 6 129 6.09e-17 80.1
Msa0357000 AT2G39880.1 53.623 69 30 2 48 115 83 150 7.50e-17 80.5
Msa0357000 AT5G14750.4 66.667 48 16 0 70 117 13 60 7.66e-17 76.3
Msa0357000 AT5G14750.2 66.667 48 16 0 70 117 13 60 7.66e-17 76.3
Msa0357000 AT1G73410.2 43.396 106 56 4 15 118 6 109 1.47e-16 77.0
Msa0357000 AT5G17800.1 39.623 106 60 4 12 115 90 193 1.69e-16 79.0
Msa0357000 AT1G73410.1 43.396 106 56 4 15 118 6 109 1.81e-16 77.8
Msa0357000 AT3G55730.1 39.815 108 59 5 15 119 56 160 2.17e-16 79.3
Msa0357000 AT3G50060.1 39.423 104 61 2 15 117 6 108 3.69e-16 77.8
Msa0357000 AT5G49620.2 35.036 137 74 2 1 122 14 150 4.25e-16 77.8
Msa0357000 AT1G66380.3 55.556 72 32 0 44 115 7 78 4.41e-16 73.2
Msa0357000 AT3G27785.1 36.607 112 68 3 8 118 183 292 7.62e-16 77.8
Msa0357000 AT3G09230.1 46.377 69 37 0 48 116 88 156 1.10e-15 77.0
Msa0357000 AT5G02320.1 39.815 108 63 2 10 116 122 228 1.24e-15 77.4
Msa0357000 AT5G02320.2 39.815 108 63 2 10 116 122 228 1.24e-15 77.4
Msa0357000 AT5G02320.3 39.815 108 63 2 10 116 62 168 1.53e-15 77.0
Msa0357000 AT4G18770.1 29.688 128 88 1 9 136 211 336 3.84e-15 75.9
Msa0357000 AT5G58850.1 35.238 105 66 2 15 118 105 208 1.09e-14 74.3
Msa0357000 AT3G09370.3 37.383 107 65 2 10 115 138 243 1.27e-14 74.3
Msa0357000 AT5G11050.1 35.514 107 67 2 13 118 103 208 1.31e-14 73.9
Msa0357000 AT3G09370.1 38.235 102 61 2 15 115 130 230 1.63e-14 73.9
Msa0357000 AT3G09370.2 38.235 102 61 2 15 115 135 235 1.64e-14 73.9
Msa0357000 AT5G40360.1 32.407 108 71 2 8 114 151 257 1.80e-14 73.6
Msa0357000 AT5G15310.3 73.171 41 11 0 88 128 9 49 1.93e-14 72.0
Msa0357000 AT2G25230.1 33.858 127 80 3 1 124 12 137 2.22e-14 71.6
Msa0357000 AT3G23250.2 61.702 47 18 0 70 116 13 59 4.28e-14 70.9
Msa0357000 AT4G33450.1 38.532 109 63 4 9 115 13 119 4.89e-14 70.9
Msa0357000 AT4G28110.2 65.854 41 14 0 88 128 4 44 6.01e-14 69.7
Msa0357000 AT1G74430.2 61.905 42 16 0 87 128 18 59 7.19e-14 69.7
Msa0357000 AT5G11510.5 42.029 69 40 0 48 116 114 182 1.78e-13 71.2
Msa0357000 AT5G11510.3 42.029 69 40 0 48 116 114 182 1.94e-13 71.2
Msa0357000 AT5G11510.1 42.029 69 40 0 48 116 114 182 1.94e-13 71.2
Msa0357000 AT5G11510.4 42.029 69 40 0 48 116 114 182 1.94e-13 71.2
Msa0357000 AT5G11510.2 42.029 69 40 0 48 116 114 182 2.09e-13 70.9
Msa0357000 AT5G14340.2 50.943 53 25 1 81 132 2 54 2.86e-13 67.4
Msa0357000 AT5G59780.1 55.102 49 22 0 70 118 1 49 1.25e-12 65.5
Msa0357000 AT3G46130.2 53.571 56 25 1 70 125 1 55 1.74e-12 65.5
Msa0357000 AT4G00540.2 41.667 72 42 0 48 119 139 210 3.13e-12 67.0
Msa0357000 AT4G32730.5 40.580 69 41 0 48 116 120 188 3.41e-12 67.4
Msa0357000 AT4G32730.4 40.580 69 41 0 48 116 120 188 3.41e-12 67.4
Msa0357000 AT4G32730.3 40.580 69 41 0 48 116 120 188 3.41e-12 67.4
Msa0357000 AT4G32730.2 40.580 69 41 0 48 116 120 188 3.41e-12 67.4
Msa0357000 AT4G32730.1 40.580 69 41 0 48 116 120 188 3.62e-12 67.4
Msa0357000 AT4G00540.1 41.667 72 42 0 48 119 137 208 4.16e-12 66.6
Msa0357000 AT1G22640.2 62.500 40 15 0 88 127 16 55 7.64e-12 63.5
Msa0357000 AT5G40430.1 35.616 73 47 0 48 120 86 158 8.37e-11 61.6
Msa0357000 AT5G39700.1 34.862 109 67 4 8 114 49 155 8.82e-11 60.5

Find 43 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATAACTGTTTCCATTT+TGG 0.092201 3_1:+37390305 None:intergenic
TCTAAACTCATTGCTGATTA+TGG 0.130701 3_1:-37390420 Msa0357000:CDS
TAATCCAACATCAATGTTTA+TGG 0.159625 3_1:-37390223 Msa0357000:CDS
CTAAAATTTGTTGTTCTTGC+AGG 0.216669 3_1:+37390076 None:intergenic
TCTAAGCTTTCCTGAACTTT+TGG 0.228314 3_1:-37389950 Msa0357000:CDS
TGTTGGATTATTATTATTAC+TGG 0.243760 3_1:+37390236 None:intergenic
GAGAAAGGCTTGTGAGTAAC+AGG 0.271065 3_1:+37390441 None:intergenic
TAACGATTAGATCTTCTTCT+TGG 0.278556 3_1:+37390592 None:intergenic
AAAGCAATTGCCACCCAAAA+TGG 0.287493 3_1:-37390319 Msa0357000:CDS
AGAAAGTCATTCCAACTAAA+TGG 0.304797 3_1:+37390138 None:intergenic
GTCATATTAATCAAGACTTT+AGG 0.329393 3_1:-37390377 Msa0357000:CDS
ATCATAGCTCAACAACTTCC+TGG 0.362064 3_1:-37390537 Msa0357000:CDS
TGTTCTTGCAGGTTATTAGT+AGG 0.374223 3_1:+37390087 None:intergenic
ATTGCTGATTATGGAAATAT+AGG 0.383788 3_1:-37390411 Msa0357000:CDS
GATGGTTCCTCCAAAAGTTC+AGG 0.395834 3_1:+37389940 None:intergenic
ACAATGATGTTAAGAACAAT+TGG 0.395885 3_1:-37390506 Msa0357000:CDS
TTAACAGGTGTTAAGAGGTA+TGG 0.406926 3_1:-37390681 Msa0357000:intron
GTTTCTTGTGTTGAAGGTAA+TGG 0.419625 3_1:+37390174 None:intergenic
AACGATTAGATCTTCTTCTT+GGG 0.424842 3_1:+37390593 None:intergenic
AAGTTTGTTTCTTGTGTTGA+AGG 0.448562 3_1:+37390168 None:intergenic
CCTTCATTTGCCTCAGAACA+TGG 0.456576 3_1:-37391443 Msa0357000:CDS
GCTTCCATAAACATTGATGT+TGG 0.479934 3_1:+37390219 None:intergenic
TGGGTGGCAATTGCTTTGAT+AGG 0.480894 3_1:+37390325 None:intergenic
GTGTCATCAAAAGAGGTGTA+TGG 0.486661 3_1:-37391487 Msa0357000:CDS
GTGAACTTATCATCATGCTT+AGG 0.502782 3_1:+37390618 None:intergenic
GATAGACCACCTACTACCTA+TGG 0.517239 3_1:+37390557 None:intergenic
TGAACTGATTAGTAATTGGA+TGG 0.519558 3_1:+37389922 None:intergenic
CCATGTTCTGAGGCAAATGA+AGG 0.535126 3_1:+37391443 None:intergenic
ACATCATTGTCTGTTCTCCC+AGG 0.541477 3_1:+37390519 None:intergenic
TCAGCAATGAGTTTAGAGAA+AGG 0.549669 3_1:+37390426 None:intergenic
TCATAGCTCAACAACTTCCT+GGG 0.565623 3_1:-37390536 Msa0357000:CDS
TTCATGCAGCCATAGGTAGT+AGG 0.572814 3_1:-37390566 Msa0357000:CDS
GTTAAGCTTCATGCAGCCAT+AGG 0.575069 3_1:-37390573 Msa0357000:CDS
CTGAGGATGATGACGAGACT+TGG 0.583127 3_1:+37390019 None:intergenic
ATCATGCTTAGGATCAAGCA+TGG 0.606048 3_1:+37390629 None:intergenic
CTCAGACATTTCATTCGTAG+AGG 0.608725 3_1:-37390001 Msa0357000:CDS
AAAAGAAGCTTTCTCAAATG+GGG 0.633115 3_1:-37390470 Msa0357000:CDS
ATTAACAGATCCATGTTCTG+AGG 0.633527 3_1:+37391433 None:intergenic
ATGGATTGCAGAAGATGCAA+AGG 0.638505 3_1:-37391468 Msa0357000:CDS
ATGCAGCCATAGGTAGTAGG+TGG 0.657431 3_1:-37390563 Msa0357000:CDS
CTCTACGAATGAAATGTCTG+AGG 0.666993 3_1:+37390002 None:intergenic
GCTGATTATGGAAATATAGG+TGG 0.681369 3_1:-37390408 Msa0357000:CDS
AGAAAGGCTTGTGAGTAACA+GGG 0.701057 3_1:+37390442 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTATATTTTTAGCAAATT+TGG + chr3_1:37390283-37390302 None:intergenic 15.0%
!! TTAAATTACACATGAATATA+AGG - chr3_1:37390357-37390376 Msa0357000:CDS 15.0%
!!! AAGAATATGTTTTTATTAAC+AGG - chr3_1:37390752-37390771 Msa0357000:intron 15.0%
!!! ATCTATATTTTTAGCAAATT+TGG + chr3_1:37390283-37390302 None:intergenic 15.0%
!! TTAAATTACACATGAATATA+AGG - chr3_1:37390357-37390376 Msa0357000:CDS 15.0%
!!! AAGAATATGTTTTTATTAAC+AGG - chr3_1:37390752-37390771 Msa0357000:intron 15.0%
!!! TTATTATCTTTTCCATCTTA+TGG - chr3_1:37390119-37390138 Msa0357000:CDS 20.0%
!!! ATATTTTTAGCAAATTTGGT+TGG + chr3_1:37390279-37390298 None:intergenic 20.0%
!!! AAATTGATTTTGATTGCATT+AGG - chr3_1:37390481-37390500 Msa0357000:CDS 20.0%
!! TGTTGGATTATTATTATTAC+TGG + chr3_1:37391215-37391234 None:intergenic 20.0%
!!! TTATTATCTTTTCCATCTTA+TGG - chr3_1:37390119-37390138 Msa0357000:CDS 20.0%
!!! ATATTTTTAGCAAATTTGGT+TGG + chr3_1:37390279-37390298 None:intergenic 20.0%
!!! AAATTGATTTTGATTGCATT+AGG - chr3_1:37390481-37390500 Msa0357000:CDS 20.0%
!! TGTTGGATTATTATTATTAC+TGG + chr3_1:37391215-37391234 None:intergenic 20.0%
! AAAAATAGTGTCATCAAAAG+AGG - chr3_1:37389954-37389973 Msa0357000:CDS 25.0%
! AAAACAAAGAAACCATAAGA+TGG + chr3_1:37390134-37390153 None:intergenic 25.0%
! TCAAAGTAACTAATGTTTCT+AGG + chr3_1:37390457-37390476 None:intergenic 25.0%
!! AGAAACATTAGTTACTTTGA+AGG - chr3_1:37390457-37390476 Msa0357000:CDS 25.0%
!! TTTTATTAACAGGTGTTAAG+AGG - chr3_1:37390762-37390781 Msa0357000:intron 25.0%
! ACAATGATGTTAAGAACAAT+TGG - chr3_1:37390942-37390961 Msa0357000:intron 25.0%
! AAAAAGAAGCTTTCTCAAAT+GGG - chr3_1:37390977-37390996 Msa0357000:intron 25.0%
!! ATTGCTGATTATGGAAATAT+AGG - chr3_1:37391037-37391056 Msa0357000:intron 25.0%
! GTCATATTAATCAAGACTTT+AGG - chr3_1:37391071-37391090 Msa0357000:intron 25.0%
!! TTCATAACTGTTTCCATTTT+GGG + chr3_1:37391145-37391164 None:intergenic 25.0%
!! ATTCATAACTGTTTCCATTT+TGG + chr3_1:37391146-37391165 None:intergenic 25.0%
!!! CATTTTCTACTTTTGTCATT+GGG + chr3_1:37391189-37391208 None:intergenic 25.0%
!!! TCATTTTCTACTTTTGTCAT+TGG + chr3_1:37391190-37391209 None:intergenic 25.0%
! TAATCCAACATCAATGTTTA+TGG - chr3_1:37391225-37391244 Msa0357000:intron 25.0%
! AAAAATAGTGTCATCAAAAG+AGG - chr3_1:37389954-37389973 Msa0357000:CDS 25.0%
! AAAACAAAGAAACCATAAGA+TGG + chr3_1:37390134-37390153 None:intergenic 25.0%
! TCAAAGTAACTAATGTTTCT+AGG + chr3_1:37390457-37390476 None:intergenic 25.0%
!! AGAAACATTAGTTACTTTGA+AGG - chr3_1:37390457-37390476 Msa0357000:CDS 25.0%
!! TTTTATTAACAGGTGTTAAG+AGG - chr3_1:37390762-37390781 Msa0357000:intron 25.0%
! ACAATGATGTTAAGAACAAT+TGG - chr3_1:37390942-37390961 Msa0357000:intron 25.0%
! AAAAAGAAGCTTTCTCAAAT+GGG - chr3_1:37390977-37390996 Msa0357000:intron 25.0%
!! ATTGCTGATTATGGAAATAT+AGG - chr3_1:37391037-37391056 Msa0357000:intron 25.0%
! GTCATATTAATCAAGACTTT+AGG - chr3_1:37391071-37391090 Msa0357000:intron 25.0%
!! TTCATAACTGTTTCCATTTT+GGG + chr3_1:37391145-37391164 None:intergenic 25.0%
!! ATTCATAACTGTTTCCATTT+TGG + chr3_1:37391146-37391165 None:intergenic 25.0%
!!! CATTTTCTACTTTTGTCATT+GGG + chr3_1:37391189-37391208 None:intergenic 25.0%
!!! TCATTTTCTACTTTTGTCAT+TGG + chr3_1:37391190-37391209 None:intergenic 25.0%
! TAATCCAACATCAATGTTTA+TGG - chr3_1:37391225-37391244 Msa0357000:intron 25.0%
!!! GTCTCTAACCTGTTTTTTTA+GGG + chr3_1:37390052-37390071 None:intergenic 30.0%
!!! AGTCTCTAACCTGTTTTTTT+AGG + chr3_1:37390053-37390072 None:intergenic 30.0%
!! CAGTAAAGTTGATGAATACA+TGG - chr3_1:37390717-37390736 Msa0357000:intron 30.0%
AACGATTAGATCTTCTTCTT+GGG + chr3_1:37390858-37390877 None:intergenic 30.0%
TAACGATTAGATCTTCTTCT+TGG + chr3_1:37390859-37390878 None:intergenic 30.0%
GAAAAAGAAGCTTTCTCAAA+TGG - chr3_1:37390976-37390995 Msa0357000:intron 30.0%
AAAAGAAGCTTTCTCAAATG+GGG - chr3_1:37390978-37390997 Msa0357000:intron 30.0%
! TCTAAACTCATTGCTGATTA+TGG - chr3_1:37391028-37391047 Msa0357000:intron 30.0%
! AAGTTTGTTTCTTGTGTTGA+AGG + chr3_1:37391283-37391302 None:intergenic 30.0%
AGAAAGTCATTCCAACTAAA+TGG + chr3_1:37391313-37391332 None:intergenic 30.0%
!! CTAAAATTTGTTGTTCTTGC+AGG + chr3_1:37391375-37391394 None:intergenic 30.0%
! CTGCAAGAACAACAAATTTT+AGG - chr3_1:37391373-37391392 Msa0357000:intron 30.0%
! CAAGAACAACAAATTTTAGG+TGG - chr3_1:37391376-37391395 Msa0357000:intron 30.0%
! TGGATTGTTTTCAAAGAAAG+AGG - chr3_1:37391396-37391415 Msa0357000:intron 30.0%
!!! GTCTCTAACCTGTTTTTTTA+GGG + chr3_1:37390052-37390071 None:intergenic 30.0%
!!! AGTCTCTAACCTGTTTTTTT+AGG + chr3_1:37390053-37390072 None:intergenic 30.0%
!! CAGTAAAGTTGATGAATACA+TGG - chr3_1:37390717-37390736 Msa0357000:intron 30.0%
AACGATTAGATCTTCTTCTT+GGG + chr3_1:37390858-37390877 None:intergenic 30.0%
TAACGATTAGATCTTCTTCT+TGG + chr3_1:37390859-37390878 None:intergenic 30.0%
GAAAAAGAAGCTTTCTCAAA+TGG - chr3_1:37390976-37390995 Msa0357000:intron 30.0%
AAAAGAAGCTTTCTCAAATG+GGG - chr3_1:37390978-37390997 Msa0357000:intron 30.0%
! TCTAAACTCATTGCTGATTA+TGG - chr3_1:37391028-37391047 Msa0357000:intron 30.0%
! AAGTTTGTTTCTTGTGTTGA+AGG + chr3_1:37391283-37391302 None:intergenic 30.0%
AGAAAGTCATTCCAACTAAA+TGG + chr3_1:37391313-37391332 None:intergenic 30.0%
!! CTAAAATTTGTTGTTCTTGC+AGG + chr3_1:37391375-37391394 None:intergenic 30.0%
! CTGCAAGAACAACAAATTTT+AGG - chr3_1:37391373-37391392 Msa0357000:intron 30.0%
! CAAGAACAACAAATTTTAGG+TGG - chr3_1:37391376-37391395 Msa0357000:intron 30.0%
! TGGATTGTTTTCAAAGAAAG+AGG - chr3_1:37391396-37391415 Msa0357000:intron 30.0%
ATTAACAGATCCATGTTCTG+AGG + chr3_1:37390018-37390037 None:intergenic 35.0%
ACTTCTGTCCCTAAAAAAAC+AGG - chr3_1:37390041-37390060 Msa0357000:CDS 35.0%
ACACATGAATATAAGGCAAG+CGG - chr3_1:37390364-37390383 Msa0357000:CDS 35.0%
!!! ATTGGTTTTGCCGTTCAAAA+AGG + chr3_1:37390410-37390429 None:intergenic 35.0%
AATGTTAGGTTTACGAGGAT+TGG + chr3_1:37390428-37390447 None:intergenic 35.0%
TTTCTAGGTCCATGAATGTT+AGG + chr3_1:37390442-37390461 None:intergenic 35.0%
! TAGGTTGAAAAGTTTGCATC+AGG - chr3_1:37390500-37390519 Msa0357000:CDS 35.0%
AATGAAGCAGAGATACTTCT+CGG + chr3_1:37390656-37390675 None:intergenic 35.0%
TTAACAGGTGTTAAGAGGTA+TGG - chr3_1:37390767-37390786 Msa0357000:intron 35.0%
GTGAACTTATCATCATGCTT+AGG + chr3_1:37390833-37390852 None:intergenic 35.0%
TCAGCAATGAGTTTAGAGAA+AGG + chr3_1:37391025-37391044 None:intergenic 35.0%
GCTGATTATGGAAATATAGG+TGG - chr3_1:37391040-37391059 Msa0357000:intron 35.0%
! ATAACTGTTTCCATTTTGGG+TGG + chr3_1:37391142-37391161 None:intergenic 35.0%
!! TTCTACTTTTGTCATTGGGA+TGG + chr3_1:37391185-37391204 None:intergenic 35.0%
GCTTCCATAAACATTGATGT+TGG + chr3_1:37391232-37391251 None:intergenic 35.0%
GTTTCTTGTGTTGAAGGTAA+TGG + chr3_1:37391277-37391296 None:intergenic 35.0%
! ACTTTTCTGCACCATTTAGT+TGG - chr3_1:37391299-37391318 Msa0357000:intron 35.0%
TGTTCTTGCAGGTTATTAGT+AGG + chr3_1:37391364-37391383 None:intergenic 35.0%
! CTCATTTTCTTGATCGAGTA+TGG + chr3_1:37391473-37391492 None:intergenic 35.0%
! TCTAAGCTTTCCTGAACTTT+TGG - chr3_1:37391498-37391517 Msa0357000:CDS 35.0%
ATTAACAGATCCATGTTCTG+AGG + chr3_1:37390018-37390037 None:intergenic 35.0%
ACTTCTGTCCCTAAAAAAAC+AGG - chr3_1:37390041-37390060 Msa0357000:CDS 35.0%
ACACATGAATATAAGGCAAG+CGG - chr3_1:37390364-37390383 Msa0357000:CDS 35.0%
!!! ATTGGTTTTGCCGTTCAAAA+AGG + chr3_1:37390410-37390429 None:intergenic 35.0%
AATGTTAGGTTTACGAGGAT+TGG + chr3_1:37390428-37390447 None:intergenic 35.0%
TTTCTAGGTCCATGAATGTT+AGG + chr3_1:37390442-37390461 None:intergenic 35.0%
! TAGGTTGAAAAGTTTGCATC+AGG - chr3_1:37390500-37390519 Msa0357000:CDS 35.0%
AATGAAGCAGAGATACTTCT+CGG + chr3_1:37390656-37390675 None:intergenic 35.0%
TTAACAGGTGTTAAGAGGTA+TGG - chr3_1:37390767-37390786 Msa0357000:intron 35.0%
GTGAACTTATCATCATGCTT+AGG + chr3_1:37390833-37390852 None:intergenic 35.0%
TCAGCAATGAGTTTAGAGAA+AGG + chr3_1:37391025-37391044 None:intergenic 35.0%
GCTGATTATGGAAATATAGG+TGG - chr3_1:37391040-37391059 Msa0357000:intron 35.0%
! ATAACTGTTTCCATTTTGGG+TGG + chr3_1:37391142-37391161 None:intergenic 35.0%
!! TTCTACTTTTGTCATTGGGA+TGG + chr3_1:37391185-37391204 None:intergenic 35.0%
GCTTCCATAAACATTGATGT+TGG + chr3_1:37391232-37391251 None:intergenic 35.0%
GTTTCTTGTGTTGAAGGTAA+TGG + chr3_1:37391277-37391296 None:intergenic 35.0%
! ACTTTTCTGCACCATTTAGT+TGG - chr3_1:37391299-37391318 Msa0357000:intron 35.0%
TGTTCTTGCAGGTTATTAGT+AGG + chr3_1:37391364-37391383 None:intergenic 35.0%
! CTCATTTTCTTGATCGAGTA+TGG + chr3_1:37391473-37391492 None:intergenic 35.0%
! TCTAAGCTTTCCTGAACTTT+TGG - chr3_1:37391498-37391517 Msa0357000:CDS 35.0%
! GTGTCATCAAAAGAGGTGTA+TGG - chr3_1:37389961-37389980 Msa0357000:CDS 40.0%
! ATGGATTGCAGAAGATGCAA+AGG - chr3_1:37389980-37389999 Msa0357000:CDS 40.0%
GCAAATTTGGTTGGACAGAA+AGG + chr3_1:37390270-37390289 None:intergenic 40.0%
CCATGAATGTTAGGTTTACG+AGG + chr3_1:37390433-37390452 None:intergenic 40.0%
CCTCGTAAACCTAACATTCA+TGG - chr3_1:37390430-37390449 Msa0357000:CDS 40.0%
! AGAGGTATGGAAAAAGTTGC+AGG - chr3_1:37390780-37390799 Msa0357000:intron 40.0%
ATGGAAAAAGTTGCAGGCTT+AGG - chr3_1:37390786-37390805 Msa0357000:intron 40.0%
ATCATGCTTAGGATCAAGCA+TGG + chr3_1:37390822-37390841 None:intergenic 40.0%
ATCATAGCTCAACAACTTCC+TGG - chr3_1:37390911-37390930 Msa0357000:intron 40.0%
TCATAGCTCAACAACTTCCT+GGG - chr3_1:37390912-37390931 Msa0357000:intron 40.0%
AGAAAGGCTTGTGAGTAACA+GGG + chr3_1:37391009-37391028 None:intergenic 40.0%
AAAGCAATTGCCACCCAAAA+TGG - chr3_1:37391129-37391148 Msa0357000:intron 40.0%
! CTTTTGTCATTGGGATGGTT+TGG + chr3_1:37391180-37391199 None:intergenic 40.0%
CTCTACGAATGAAATGTCTG+AGG + chr3_1:37391449-37391468 None:intergenic 40.0%
CTCAGACATTTCATTCGTAG+AGG - chr3_1:37391447-37391466 Msa0357000:CDS 40.0%
! AAGCTTTCCTGAACTTTTGG+AGG - chr3_1:37391501-37391520 Msa0357000:CDS 40.0%
! GTGTCATCAAAAGAGGTGTA+TGG - chr3_1:37389961-37389980 Msa0357000:CDS 40.0%
! ATGGATTGCAGAAGATGCAA+AGG - chr3_1:37389980-37389999 Msa0357000:CDS 40.0%
GCAAATTTGGTTGGACAGAA+AGG + chr3_1:37390270-37390289 None:intergenic 40.0%
CCATGAATGTTAGGTTTACG+AGG + chr3_1:37390433-37390452 None:intergenic 40.0%
CCTCGTAAACCTAACATTCA+TGG - chr3_1:37390430-37390449 Msa0357000:CDS 40.0%
! AGAGGTATGGAAAAAGTTGC+AGG - chr3_1:37390780-37390799 Msa0357000:intron 40.0%
ATGGAAAAAGTTGCAGGCTT+AGG - chr3_1:37390786-37390805 Msa0357000:intron 40.0%
ATCATGCTTAGGATCAAGCA+TGG + chr3_1:37390822-37390841 None:intergenic 40.0%
ATCATAGCTCAACAACTTCC+TGG - chr3_1:37390911-37390930 Msa0357000:intron 40.0%
TCATAGCTCAACAACTTCCT+GGG - chr3_1:37390912-37390931 Msa0357000:intron 40.0%
AGAAAGGCTTGTGAGTAACA+GGG + chr3_1:37391009-37391028 None:intergenic 40.0%
AAAGCAATTGCCACCCAAAA+TGG - chr3_1:37391129-37391148 Msa0357000:intron 40.0%
! CTTTTGTCATTGGGATGGTT+TGG + chr3_1:37391180-37391199 None:intergenic 40.0%
CTCTACGAATGAAATGTCTG+AGG + chr3_1:37391449-37391468 None:intergenic 40.0%
CTCAGACATTTCATTCGTAG+AGG - chr3_1:37391447-37391466 Msa0357000:CDS 40.0%
! AAGCTTTCCTGAACTTTTGG+AGG - chr3_1:37391501-37391520 Msa0357000:CDS 40.0%
!! CCATGTTCTGAGGCAAATGA+AGG + chr3_1:37390008-37390027 None:intergenic 45.0%
CCTTCATTTGCCTCAGAACA+TGG - chr3_1:37390005-37390024 Msa0357000:CDS 45.0%
GCAGAGATACTTCTCGGATT+AGG + chr3_1:37390650-37390669 None:intergenic 45.0%
GAAAAAGTTGCAGGCTTAGG+TGG - chr3_1:37390789-37390808 Msa0357000:intron 45.0%
GTTAAGCTTCATGCAGCCAT+AGG - chr3_1:37390875-37390894 Msa0357000:intron 45.0%
TTCATGCAGCCATAGGTAGT+AGG - chr3_1:37390882-37390901 Msa0357000:intron 45.0%
GATAGACCACCTACTACCTA+TGG + chr3_1:37390894-37390913 None:intergenic 45.0%
ACATCATTGTCTGTTCTCCC+AGG + chr3_1:37390932-37390951 None:intergenic 45.0%
GAGAAAGGCTTGTGAGTAAC+AGG + chr3_1:37391010-37391029 None:intergenic 45.0%
TGGGTGGCAATTGCTTTGAT+AGG + chr3_1:37391126-37391145 None:intergenic 45.0%
GATGGTTCCTCCAAAAGTTC+AGG + chr3_1:37391511-37391530 None:intergenic 45.0%
!! CCATGTTCTGAGGCAAATGA+AGG + chr3_1:37390008-37390027 None:intergenic 45.0%
CCTTCATTTGCCTCAGAACA+TGG - chr3_1:37390005-37390024 Msa0357000:CDS 45.0%
GCAGAGATACTTCTCGGATT+AGG + chr3_1:37390650-37390669 None:intergenic 45.0%
GAAAAAGTTGCAGGCTTAGG+TGG - chr3_1:37390789-37390808 Msa0357000:intron 45.0%
GTTAAGCTTCATGCAGCCAT+AGG - chr3_1:37390875-37390894 Msa0357000:intron 45.0%
TTCATGCAGCCATAGGTAGT+AGG - chr3_1:37390882-37390901 Msa0357000:intron 45.0%
GATAGACCACCTACTACCTA+TGG + chr3_1:37390894-37390913 None:intergenic 45.0%
ACATCATTGTCTGTTCTCCC+AGG + chr3_1:37390932-37390951 None:intergenic 45.0%
GAGAAAGGCTTGTGAGTAAC+AGG + chr3_1:37391010-37391029 None:intergenic 45.0%
TGGGTGGCAATTGCTTTGAT+AGG + chr3_1:37391126-37391145 None:intergenic 45.0%
GATGGTTCCTCCAAAAGTTC+AGG + chr3_1:37391511-37391530 None:intergenic 45.0%
TGCCGTTCAAAAAGGCCTAG+CGG + chr3_1:37390402-37390421 None:intergenic 50.0%
GATTAGGCGTCTCTCAGTGT+CGG + chr3_1:37390634-37390653 None:intergenic 50.0%
ATGCAGCCATAGGTAGTAGG+TGG - chr3_1:37390885-37390904 Msa0357000:intron 50.0%
! CTGAGGATGATGACGAGACT+TGG + chr3_1:37391432-37391451 None:intergenic 50.0%
TGCCGTTCAAAAAGGCCTAG+CGG + chr3_1:37390402-37390421 None:intergenic 50.0%
GATTAGGCGTCTCTCAGTGT+CGG + chr3_1:37390634-37390653 None:intergenic 50.0%
ATGCAGCCATAGGTAGTAGG+TGG - chr3_1:37390885-37390904 Msa0357000:intron 50.0%
! CTGAGGATGATGACGAGACT+TGG + chr3_1:37391432-37391451 None:intergenic 50.0%
! CGCCGCTAGGCCTTTTTGAA+CGG - chr3_1:37390397-37390416 Msa0357000:CDS 55.0%
! CGCCGCTAGGCCTTTTTGAA+CGG - chr3_1:37390397-37390416 Msa0357000:CDS 55.0%
CACCAGACACGACACAGACG+TGG - chr3_1:37390562-37390581 Msa0357000:CDS 60.0%
GTCCACGTCTGTGTCGTGTC+TGG + chr3_1:37390567-37390586 None:intergenic 60.0%
CACCAGACACGACACAGACG+TGG - chr3_1:37390562-37390581 Msa0357000:CDS 60.0%
GTCCACGTCTGTGTCGTGTC+TGG + chr3_1:37390567-37390586 None:intergenic 60.0%
CGGACAACAAGCTCGCCGCT+AGG - chr3_1:37390384-37390403 Msa0357000:CDS 65.0%
CGGACAACAAGCTCGCCGCT+AGG - chr3_1:37390384-37390403 Msa0357000:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 37389930 37391540 37389930 ID=Msa0357000;Name=Msa0357000
chr3_1 mRNA 37389930 37391540 37389930 ID=Msa0357000-mRNA-1;Parent=Msa0357000;Name=Msa0357000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|299
chr3_1 exon 37391408 37391540 37391408 ID=Msa0357000-mRNA-1:exon:6837;Parent=Msa0357000-mRNA-1
chr3_1 exon 37389930 37390696 37389930 ID=Msa0357000-mRNA-1:exon:6836;Parent=Msa0357000-mRNA-1
chr3_1 CDS 37391408 37391540 37391408 ID=Msa0357000-mRNA-1:cds;Parent=Msa0357000-mRNA-1
chr3_1 CDS 37389930 37390696 37389930 ID=Msa0357000-mRNA-1:cds;Parent=Msa0357000-mRNA-1
Gene Sequence

>Msa0357000

ATGGTGAAGTCTTCAAGTTGTGAAAAAAATAGTGTCATCAAAAGAGGTGTATGGATTGCAGAAGATGCAAAGGCACCTTCATTTGCCTCAGAACATGGATCTGTTAATTTGACTTCTGTCCCTAAAAAAACAGGTGTTAAGAGGTATGGAAAAAGTTGCAGGCTTAGGTGGAGTAACTCCATGCTTGATCCTAAGCATGATGATAAGTTCACATCCCAAGAAGAAGATCTAATCGTTAAGCTTCATGCAGCCATAGGTAGTAGGTGGTCTATCATAGCTCAACAACTTCCTGGGAGAACAGACAATGATGTTAAGAACAATTGGAACACAAAGCTGAAAAAGAAGCTTTCTCAAATGGGGATAGACCCTGTTACTCACAAGCCTTTCTCTAAACTCATTGCTGATTATGGAAATATAGGTGGTGCTAATTGTCATATTAATCAAGACTTTAGGAATCAAAGATTGATCAGAAACACAAATGACCTATCAAAGCAATTGCCACCCAAAATGGAAACAGTTATGAATCTTTCACAGTTCCAAACCATCCCAATGACAAAAGTAGAAAATGAAACCAGTAATAATAATAATCCAACATCAATGTTTATGGAAGCATTCTTGTCATCATCATCATCACCATTACCTTCAACACAAGAAACAAACTTTTCTGCACCATTTAGTTGGAATGACTTTCTTCTACAAGATGCTTTTTCACAAGATGAACCTACTAATAACCTGCAAGAACAACAAATTTTAGGTGGATTGTTTTCAAAGAAAGAGGTCATGTCACACCAAGTCTCGTCATCATCCTCAGACATTTCATTCGTAGAGGCCATACTCGATCAAGAAAATGAGATGTTTCTAAGCTTTCCTGAACTTTTGGAGGAACCATCCAATTACTAA
Protein sequence

>Msa0357000

MVKSSSCEKNSVIKRGVWIAEDAKAPSFASEHGSVNLTSVPKKTGVKRYGKSCRLRWSNSMLDPKHDDKFTSQEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGGANCHINQDFRNQRLIRNTNDLSKQLPPKMETVMNLSQFQTIPMTKVENETSNNNNPTSMFMEAFLSSSSSPLPSTQETNFSAPFSWNDFLLQDAFSQDEPTNNLQEQQILGGLFSKKEVMSHQVSSSSSDISFVEAILDQENEMFLSFPELLEEPSNY*