AlfalfaGEDB | Msa0357410

M. sativa cultivar zhongmu-4 / Msa0357410

KEGG: K13412
GO: GO:0001101 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010769 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0046777 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080092 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:2000241
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357410	KEH17263.1	98.499	533	8	0	1	533	1	533	0.0	1103

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357410	sp\|Q9FMP5\|CDPKH_ARATH	81.509	530	91	4	1	529	1	524	0.0	897

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357410	A0A072TK46	98.499	533	8	0	1	533	1	533	0.0	1103

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0357410	MtrunA17_Chr0c02g0489761	98.499	533	8	0	1	533	1	533	1103
Msa0357410	MtrunA17_Chr5g0441691	83.962	530	75	2	1	530	1	520	940
Msa0357410	MtrunA17_Chr8g0387671	71.968	503	137	2	30	528	14	516	759
Msa0357410	MtrunA17_Chr5g0397101	70.414	507	145	4	23	528	14	516	737
Msa0357410	MtrunA17_Chr5g0444171	66.129	496	162	2	23	518	43	532	696
Msa0357410	MtrunA17_Chr3g0098951	63.670	534	180	4	1	521	1	533	693
Msa0357410	MtrunA17_Chr4g0074811	65.524	496	160	1	25	520	49	533	692
Msa0357410	MtrunA17_Chr1g0170281	60.374	535	180	7	12	519	29	558	658
Msa0357410	MtrunA17_Chr1g0157131	65.591	465	160	0	63	527	59	523	657
Msa0357410	MtrunA17_Chr1g0176751	56.884	552	211	7	3	530	27	575	636

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0357410	AT5G12180.1	81.509	530	91	4	1	529	1	524	897
Msa0357410	AT5G19360.1	79.206	529	100	2	1	529	1	519	872
Msa0357410	AT4G23650.1	71.613	465	132	0	64	528	64	528	721
Msa0357410	AT1G50700.1	63.724	521	184	1	1	521	1	516	702
Msa0357410	AT3G20410.2	61.825	537	186	3	1	521	1	534	693
Msa0357410	AT3G20410.1	61.825	537	186	3	1	521	1	534	693
Msa0357410	AT4G04720.2	66.189	488	163	2	39	525	40	526	691
Msa0357410	AT4G04720.1	66.189	488	163	2	39	525	40	526	691
Msa0357410	AT1G50700.2	60.695	547	184	2	1	521	1	542	687
Msa0357410	AT4G21940.1	60.332	542	190	5	1	518	1	541	682

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Find 142 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGACTTGCAAAGCA+GGG	0.632193	3_1:+39715930	Msa0357410:CDS
AAAGACGGATAGACCAAAAT+CGG	0.492406	3_1:-39714229	None:intergenic
AAATTTCCTCTTGTTGAATA+AGG	0.255384	3_1:+39714182	Msa0357410:CDS
AACACATTTATGTACACATA+AGG	0.500391	3_1:+39713837	Msa0357410:CDS
AACGGGCCAAGCAAACATTG+TGG	0.707943	3_1:+39713963	Msa0357410:CDS
AACTTCTTGTTCTGAAAGCT+TGG	0.389492	3_1:-39715955	None:intergenic
AAGGCTGTAAGTCTTTGTTT+TGG	0.386438	3_1:-39715266	None:intergenic
AATACGGCCGCGGCCGACAA+GGG	0.565260	3_1:+39713607	Msa0357410:CDS
AATACGGGGCCAATTGCGGC+CGG	0.541428	3_1:-39713742	None:intergenic
AATAGATCACCCTTGGATCA+AGG	0.505076	3_1:+39715412	Msa0357410:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAAAACTAGTGAATAAAG+AGG	+	chr3_1:39713897-39713916	Msa0357410:CDS	30.0%
AGTGAATAAAGAGGATATAG+AGG	+	chr3_1:39713906-39713925	Msa0357410:CDS	30.0%
TGCTTATGAAGACAAACAAT+CGG	+	chr3_1:39713996-39714015	Msa0357410:CDS	30.0%
TTTCATCCTTATTCAACAAG+AGG	-	chr3_1:39714191-39714210	None:intergenic	30.0%
TCTCTATACATGTTTCTTCT+TGG	+	chr3_1:39714298-39714317	Msa0357410:intron	30.0%
ATGAATTAATTCCTACGCAT+TGG	+	chr3_1:39714381-39714400	Msa0357410:intron	30.0%
TTTCTACACCCTGAATAAAA+AGG	-	chr3_1:39714417-39714436	None:intergenic	30.0%
AAGCTAAAGAGCTATATCTA+AGG	-	chr3_1:39714530-39714549	None:intergenic	30.0%
ATGCTATACATTCTTCTTTC+TGG	+	chr3_1:39714770-39714789	Msa0357410:CDS	30.0%
AATATTTAACCTGCCCAAAA+AGG	-	chr3_1:39714803-39714822	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	39713565	39716997	39713565	ID=Msa0357410;Name=Msa0357410
chr3_1	mRNA	39713565	39716997	39713565	ID=Msa0357410-mRNA-1;Parent=Msa0357410;Name=Msa0357410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|8\|0\|534
chr3_1	exon	39713565	39714261	39713565	ID=Msa0357410-mRNA-1:exon:7059;Parent=Msa0357410-mRNA-1
chr3_1	exon	39714669	39714812	39714669	ID=Msa0357410-mRNA-1:exon:7060;Parent=Msa0357410-mRNA-1
chr3_1	exon	39715147	39715299	39715147	ID=Msa0357410-mRNA-1:exon:7061;Parent=Msa0357410-mRNA-1
chr3_1	exon	39715417	39715532	39715417	ID=Msa0357410-mRNA-1:exon:7062;Parent=Msa0357410-mRNA-1
chr3_1	exon	39715828	39715995	39715828	ID=Msa0357410-mRNA-1:exon:7063;Parent=Msa0357410-mRNA-1
chr3_1	exon	39716344	39716471	39716344	ID=Msa0357410-mRNA-1:exon:7064;Parent=Msa0357410-mRNA-1
chr3_1	exon	39716596	39716695	39716596	ID=Msa0357410-mRNA-1:exon:7065;Parent=Msa0357410-mRNA-1
chr3_1	exon	39716899	39716997	39716899	ID=Msa0357410-mRNA-1:exon:7066;Parent=Msa0357410-mRNA-1
chr3_1	CDS	39713565	39714261	39713565	ID=Msa0357410-mRNA-1:cds;Parent=Msa0357410-mRNA-1
chr3_1	CDS	39714669	39714812	39714669	ID=Msa0357410-mRNA-1:cds;Parent=Msa0357410-mRNA-1
chr3_1	CDS	39715147	39715299	39715147	ID=Msa0357410-mRNA-1:cds;Parent=Msa0357410-mRNA-1
chr3_1	CDS	39715417	39715532	39715417	ID=Msa0357410-mRNA-1:cds;Parent=Msa0357410-mRNA-1
chr3_1	CDS	39715828	39715995	39715828	ID=Msa0357410-mRNA-1:cds;Parent=Msa0357410-mRNA-1
chr3_1	CDS	39716344	39716471	39716344	ID=Msa0357410-mRNA-1:cds;Parent=Msa0357410-mRNA-1
chr3_1	CDS	39716596	39716695	39716596	ID=Msa0357410-mRNA-1:cds;Parent=Msa0357410-mRNA-1
chr3_1	CDS	39716899	39716997	39716899	ID=Msa0357410-mRNA-1:cds;Parent=Msa0357410-mRNA-1

Gene Sequence

>Msa0357410

ATGGGAAATTGTTGCTCCCAAGGCGGTGATACCCCGGCCGACAATACGGCCGCGGCCGACAAGGGAGAAGCCAACACAAACCAGGATAATGAGCCATCAACGAACCCTATCACGACGCCACCACCAACATCAAAACCACCACAAACAACGGCACCTCCTTCATCAAAACCCTCGAAACCGGCCGCAATTGGCCCCGTATTACAACGACCAATGGAAGACGTTCGAGCCATATATTCCATAGGGAAAGAGCTAGGGAGAGGACAATTTGGGGTAACACATTTATGTACACATAAGGTAACAAAAGAACAATTTGCATGCAAAACGATTGCCAAGAGAAAACTAGTGAATAAAGAGGATATAGAGGATGTTAGAAGGGAAGTGCAAATAATGCATCACCTAACGGGCCAAGCAAACATTGTGGAACTGAAAGGTGCTTATGAAGACAAACAATCGGTTCATTTGGTCATGGAATTATGTGCCGGTGGTGAACTATTTGATCGAATCATCGCAAAGGGACATTATACCGAACGTGCCGCAGCTTCTTTGATGAGAACCATTGTGCAAATAATTCATACTTTGCATTCAATGGGTGTTATTCATAGAGATCTTAAGCCAGAAAATTTCCTCTTGTTGAATAAGGATGAAAATGCACCCCTTAAGGCCACCGATTTTGGTCTATCCGTCTTTTTCAAAGAAGGAGAGATGTTCAAAGACATTGTTGGCAGTGCATATTACATAGCACCAGAGGTGTTGAAGAGAAGATATGGGCCTGAAGTTGACATTTGGAGTATTGGTGTCATGCTATACATTCTTCTTTCTGGTGTCCCTCCTTTTTGGGCAGAATCTGAACATGGTATATTCAATGCCATCTTAAGAGGCCACATTGACTTTACAAGCGATCCATGGCCTTCAATTTCACCTTCAGCAAAAGATCTTGTAAGGAAAATGTTAAATTCAGATCCAAAACAAAGACTTACAGCCTTTGAAGTTTTGAATCACCCTTGGATCAAGGAGGATGGTGAAGCACCAGATAAACCTATTGACAATGCTGTACTAAATAGGCTCAAGCAGTTTAGAGCAATGAACCAATTTAAGAAAGTTGCTCTAAGGGTAATTGCTGGATGTTTATCGGAAGAAGAAATAATGGGGTTGAAGGAAATGTTCAAGGGGATGGACACTGACAACAGTGGAACCATTACAGTTGAAGAGCTCAAACAAGGACTTGCAAAGCAGGGCACCAAGCTTTCAGAACAAGAAGTTAAGCAGTTAATGGAAGCTGCTGATGCTGATGGCAATGGAACAATAGATTACGACGAGTTCATCACAGCAACAATGCACATGAACAGAATGAATAGAGAAGAACATCTTTACACTGCCTTCCAATACTTTGATAAGGATAACAGCGGGTTCATTACCACTGAAGAACTAGATCAAGCTCTCCGTGAATACAACATGCATGATGGCAGAGACATCAAAGAGATACTTCAAGAAGTTGATGGAGATAATGATGGACGTATTAACTATGATGAGTTTGCTGCAATGATGAGAAAAGGAAATCCGGAAGCTCATACTAAGAAGAGGCGTGATTCATTTGTTTCAACTTAG

Protein sequence

>Msa0357410

MGNCCSQGGDTPADNTAAADKGEANTNQDNEPSTNPITTPPPTSKPPQTTAPPSSKPSKPAAIGPVLQRPMEDVRAIYSIGKELGRGQFGVTHLCTHKVTKEQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQANIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLMRTIVQIIHTLHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFFKEGEMFKDIVGSAYYIAPEVLKRRYGPEVDIWSIGVMLYILLSGVPPFWAESEHGIFNAILRGHIDFTSDPWPSISPSAKDLVRKMLNSDPKQRLTAFEVLNHPWIKEDGEAPDKPIDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITVEELKQGLAKQGTKLSEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITTEELDQALREYNMHDGRDIKEILQEVDGDNDGRINYDEFAAMMRKGNPEAHTKKRRDSFVST*