Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357690 | KEH33239.1 | 86.928 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 2.15e-88 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357690 | sp|Q9FKI4|NAA10_ARATH | 44.516 | 155 | 75 | 4 | 6 | 150 | 2 | 155 | 3.74e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357690 | A0A072UTR7 | 86.928 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 1.03e-88 | 265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0357690 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357690 | MtrunA17_Chr3g0088851 | 88.660 | 97 | 9 | 1 | 1 | 97 | 1 | 95 | 2.77e-58 | 177 |
| Msa0357690 | MtrunA17_Chr3g0090311 | 47.436 | 156 | 71 | 4 | 6 | 151 | 2 | 156 | 2.05e-34 | 118 |
| Msa0357690 | MtrunA17_Chr3g0098461 | 38.854 | 157 | 85 | 6 | 1 | 151 | 1 | 152 | 7.51e-20 | 80.9 |
| Msa0357690 | MtrunA17_Chr7g0275421 | 28.070 | 114 | 78 | 3 | 35 | 146 | 24 | 135 | 3.32e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357690 | AT5G13780.1 | 44.516 | 155 | 75 | 4 | 6 | 150 | 2 | 155 | 3.80e-30 | 108 |
| Msa0357690 | AT1G03150.1 | 28.947 | 114 | 77 | 3 | 35 | 146 | 39 | 150 | 2.57e-12 | 61.6 |
Find 71 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCCGAAGTCCATTTATT+TGG | 0.199476 | 3_1:-41208204 | None:intergenic |
| TTCCACAATGTGCCAATATT+CGG | 0.287513 | 3_1:+41207781 | None:intergenic |
| AGGATGTCTTATGAACAATT+TGG | 0.318747 | 3_1:-41205448 | Msa0357690:three_prime_UTR |
| GACAGAGAGAACCAAATAAA+TGG | 0.319346 | 3_1:+41208193 | None:intergenic |
| CTCGTTACTCGCCCGAATAT+TGG | 0.335099 | 3_1:-41207793 | Msa0357690:CDS |
| ATGCATGCTTCAAAATATTA+AGG | 0.337012 | 3_1:+41205415 | None:intergenic |
| TGCATAAGAGTTGCAACATT+TGG | 0.337938 | 3_1:-41207847 | Msa0357690:CDS |
| CTGAGTAGTGAGAGGAAATA+TGG | 0.344451 | 3_1:-41205378 | Msa0357690:three_prime_UTR |
| GAGCTGCAGAGTTGCTCTTC+CGG | 0.345662 | 3_1:+41206906 | None:intergenic |
| TCCACAATGTGCCAATATTC+GGG | 0.349965 | 3_1:+41207782 | None:intergenic |
| CTAACCATGAAGCAGTTATA+AGG | 0.357105 | 3_1:-41207892 | Msa0357690:intron |
| TCTTGGTTTGTTTGAAAAGA+TGG | 0.363394 | 3_1:-41206885 | Msa0357690:CDS |
| TGCGTTAATCTTCAGTTTCA+AGG | 0.375277 | 3_1:-41208074 | Msa0357690:five_prime_UTR |
| TGCAACATTTGGAGACGTAT+TGG | 0.394327 | 3_1:-41207836 | Msa0357690:CDS |
| GAACCAAATAAATGGACTTC+GGG | 0.394753 | 3_1:+41208201 | None:intergenic |
| GATAGGTATGGTGAACGAAT+AGG | 0.421395 | 3_1:+41207653 | None:intergenic |
| TTCTTCAGCCAGTCAAGATT+AGG | 0.429891 | 3_1:-41205693 | Msa0357690:intron |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3_1:+41206838 | None:intergenic |
| ATAGGTATGGTGAACGAATA+GGG | 0.433258 | 3_1:+41207654 | None:intergenic |
| CTCTGAAGGTGAAGAGGAAG+AGG | 0.447607 | 3_1:-41207704 | Msa0357690:CDS |
| GTGGATCTGCTCCGAGCAAT+GGG | 0.452575 | 3_1:+41208120 | None:intergenic |
| CGCCCAAAACACCATGGAAA+AGG | 0.453353 | 3_1:-41207596 | Msa0357690:intron |
| CTTGGTTTGTTTGAAAAGAT+GGG | 0.459057 | 3_1:-41206884 | Msa0357690:CDS |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3_1:-41206902 | Msa0357690:CDS |
| AAGACGTCTCAGTGCACGTC+CGG | 0.493597 | 3_1:-41206925 | Msa0357690:CDS |
| GACAAAACCTTCTCTGTGAA+AGG | 0.497172 | 3_1:+41208142 | None:intergenic |
| CATTTGGAGACGTATTGGAT+TGG | 0.499964 | 3_1:-41207831 | Msa0357690:CDS |
| ACAAAACCTTCTCTGTGAAA+GGG | 0.501016 | 3_1:+41208143 | None:intergenic |
| TTCTCTGTGAAAGGGTTTCG+CGG | 0.506992 | 3_1:+41208151 | None:intergenic |
| GAAGGTCTTCCTCCTCCTGC+GGG | 0.507846 | 3_1:+41205713 | None:intergenic |
| AGGAACAATGTCTTCAAAGA+AGG | 0.508100 | 3_1:-41207872 | Msa0357690:exon |
| GTTGCTTACCTCCTCTCTGA+AGG | 0.508220 | 3_1:-41207718 | Msa0357690:CDS |
| GATTTAACATGTAGTACTGC+AGG | 0.520464 | 3_1:-41205532 | Msa0357690:intron |
| AGAACCAAATAAATGGACTT+CGG | 0.523094 | 3_1:+41208200 | None:intergenic |
| ATGGATTCTCCCGCAGGAGG+AGG | 0.526333 | 3_1:-41205722 | Msa0357690:three_prime_UTR |
| AAGGTGAAGAGGAAGAGGAA+GGG | 0.530803 | 3_1:-41207699 | Msa0357690:CDS |
| CCTTAACACCTAATCTTGAC+TGG | 0.533110 | 3_1:+41205685 | None:intergenic |
| GCGTTAATCTTCAGTTTCAA+GGG | 0.537328 | 3_1:-41208073 | Msa0357690:intron |
| GGTGGATCTGCTCCGAGCAA+TGG | 0.539383 | 3_1:+41208119 | None:intergenic |
| TAATCTTGACTGGCTGAAGA+AGG | 0.548995 | 3_1:+41205695 | None:intergenic |
| GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3_1:-41206806 | Msa0357690:CDS |
| TCAAACATGGATTCTCCCGC+AGG | 0.555440 | 3_1:-41205728 | Msa0357690:three_prime_UTR |
| CCACCGTGTCGGAGGCCGTA+CGG | 0.555632 | 3_1:-41208101 | Msa0357690:five_prime_UTR |
| GAAGGTGAAGAGGAAGAGGA+AGG | 0.556577 | 3_1:-41207700 | Msa0357690:CDS |
| GCGAAACCCTTTCACAGAGA+AGG | 0.557527 | 3_1:-41208149 | Msa0357690:five_prime_UTR |
| TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3_1:-41206807 | Msa0357690:CDS |
| CCTCCTCTCTGAAGGTGAAG+AGG | 0.564442 | 3_1:-41207710 | Msa0357690:CDS |
| GCCCGAATATTGGCACATTG+TGG | 0.568169 | 3_1:-41207783 | Msa0357690:CDS |
| CGACCGTACGGCCTCCGACA+CGG | 0.569728 | 3_1:+41208098 | None:intergenic |
| GAGCAGATCCACCGTGTCGG+AGG | 0.590065 | 3_1:-41208109 | Msa0357690:five_prime_UTR |
| AGATTAACGCAGCGACCGTA+CGG | 0.590504 | 3_1:+41208086 | None:intergenic |
| AGAAGGTCTTCCTCCTCCTG+CGG | 0.599858 | 3_1:+41205712 | None:intergenic |
| CCTCTTCACCTTCAGAGAGG+AGG | 0.614706 | 3_1:+41207710 | None:intergenic |
| AGGAGGACGCTATTGTCTTG+AGG | 0.615172 | 3_1:-41206820 | Msa0357690:CDS |
| CACCGCCGCCCAAAACACCA+TGG | 0.620119 | 3_1:-41207602 | Msa0357690:CDS |
| ATAGGGAGGCGATACTAAAG+TGG | 0.620673 | 3_1:+41207671 | None:intergenic |
| CACCATACCTATCGTAAACG+TGG | 0.631082 | 3_1:-41207643 | Msa0357690:CDS |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3_1:+41206772 | None:intergenic |
| CTTCCTCTTCACCTTCAGAG+AGG | 0.638002 | 3_1:+41207707 | None:intergenic |
| AACATGGATTCTCCCGCAGG+AGG | 0.639259 | 3_1:-41205725 | Msa0357690:three_prime_UTR |
| GAAGAAGCTTATTCATGTCG+CGG | 0.645766 | 3_1:-41207761 | Msa0357690:CDS |
| AGTGAGTGCTGAGTAGTGAG+AGG | 0.650520 | 3_1:-41205386 | Msa0357690:three_prime_UTR |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3_1:+41207641 | None:intergenic |
| TCGGAGCAGATCCACCGTGT+CGG | 0.652706 | 3_1:-41208112 | Msa0357690:five_prime_UTR |
| TTACACACTTCACAAGGTGA+AGG | 0.674591 | 3_1:-41206861 | Msa0357690:CDS |
| GATGGGTTACACACTTCACA+AGG | 0.677775 | 3_1:-41206867 | Msa0357690:CDS |
| AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3_1:+41207636 | None:intergenic |
| TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3_1:-41206805 | Msa0357690:CDS |
| CATGTCGCGGACAATTGCAG+CGG | 0.697708 | 3_1:-41207748 | Msa0357690:CDS |
| CCGTACGGCCTCCGACACGG+TGG | 0.742152 | 3_1:+41208101 | None:intergenic |
| GGTATGGTGAACGAATAGGG+AGG | 0.789435 | 3_1:+41207657 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACATAGAAAGAAATTA+GGG | + | chr3_1:41205622-41205641 | None:intergenic | 15.0% |
| !!! | TCTGTTATAATTTTGTTTTT+TGG | - | chr3_1:41206024-41206043 | Msa0357690:intron | 15.0% |
| !!! | ATAATTTTGTTTTTTGGATT+AGG | - | chr3_1:41206030-41206049 | Msa0357690:intron | 15.0% |
| !! | GAAAATAATTAAAACTTTGA+TGG | - | chr3_1:41206862-41206881 | Msa0357690:CDS | 15.0% |
| !! | TAGGGTTTCAATTAAAATTT+GGG | + | chr3_1:41205604-41205623 | None:intergenic | 20.0% |
| !! | TTAGGGTTTCAATTAAAATT+TGG | + | chr3_1:41205605-41205624 | None:intergenic | 20.0% |
| !! | CATAAACATAGAAAGAAATT+AGG | + | chr3_1:41205623-41205642 | None:intergenic | 20.0% |
| !!! | TTCTAAAGATTGTTATGTTT+TGG | + | chr3_1:41205663-41205682 | None:intergenic | 20.0% |
| !!! | TTGATAGTCACTAATATTTA+GGG | - | chr3_1:41206961-41206980 | Msa0357690:intron | 20.0% |
| !!! | ACTTTGTATATTTTGTAGTA+TGG | - | chr3_1:41207929-41207948 | Msa0357690:intron | 20.0% |
| !! | ATTTGATATAACCATAGATT+AGG | - | chr3_1:41208015-41208034 | Msa0357690:intron | 20.0% |
| ! | AGGGTTTCAATTAAAATTTG+GGG | + | chr3_1:41205603-41205622 | None:intergenic | 25.0% |
| !! | ATGGAGTTTGTTTAATGTTT+AGG | - | chr3_1:41206110-41206129 | Msa0357690:intron | 25.0% |
| !! | TTTCTTCTTGTTAGTGATTT+TGG | - | chr3_1:41206390-41206409 | Msa0357690:intron | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3_1:41206474-41206493 | None:intergenic | 25.0% |
| !!! | TTTTCTTGTTTCCTAATCTT+GGG | - | chr3_1:41206489-41206508 | Msa0357690:intron | 25.0% |
| ! | ACAACCAAAAACATCAAAAA+AGG | + | chr3_1:41206569-41206588 | None:intergenic | 25.0% |
| !! | ACATTGTAACAGACTTTTAA+TGG | + | chr3_1:41206607-41206626 | None:intergenic | 25.0% |
| ! | TCTAGAAAATGGAAAAAGAT+GGG | + | chr3_1:41206833-41206852 | None:intergenic | 25.0% |
| !! | TTCTAGAAAATGGAAAAAGA+TGG | + | chr3_1:41206834-41206853 | None:intergenic | 25.0% |
| !! | TCACAATACATTCTAGAAAA+TGG | + | chr3_1:41206844-41206863 | None:intergenic | 25.0% |
| !! | ATAATTAAAACTTTGATGGC+TGG | - | chr3_1:41206866-41206885 | Msa0357690:CDS | 25.0% |
| ! | CTGGTTTAATATTTACATGA+TGG | - | chr3_1:41206885-41206904 | Msa0357690:CDS | 25.0% |
| !! | CTTGATAGTCACTAATATTT+AGG | - | chr3_1:41206960-41206979 | Msa0357690:intron | 25.0% |
| !!! | TGTTGCTTATTGATTTCAAA+TGG | - | chr3_1:41207262-41207281 | Msa0357690:intron | 25.0% |
| ! | ATGGAGGTAAAAAAAATGAA+TGG | - | chr3_1:41207281-41207300 | Msa0357690:intron | 25.0% |
| ! | TAACATCATGTAAAGTAACA+CGG | + | chr3_1:41207307-41207326 | None:intergenic | 25.0% |
| ! | ATGTTAACTACAACCTTATA+AGG | - | chr3_1:41207321-41207340 | Msa0357690:intron | 25.0% |
| ! | AAATATACTGTTTGAGTATG+TGG | + | chr3_1:41207393-41207412 | None:intergenic | 25.0% |
| !!! | TTTGTCTTTTTCAAAGATCT+AGG | - | chr3_1:41207441-41207460 | Msa0357690:intron | 25.0% |
| ! | AAAGCATAAAGGATTAAAGT+TGG | + | chr3_1:41207512-41207531 | None:intergenic | 25.0% |
| ! | TTAATCCTTTATGCTTTCTT+CGG | - | chr3_1:41207515-41207534 | Msa0357690:intron | 25.0% |
| ! | CAATCAATTAAGAGAACAAA+TGG | + | chr3_1:41207585-41207604 | None:intergenic | 25.0% |
| ! | CATTTGTTCTCTTAATTGAT+TGG | - | chr3_1:41207583-41207602 | Msa0357690:intron | 25.0% |
| ! | GAAAATATGCAAGTAGTAAA+AGG | + | chr3_1:41207723-41207742 | None:intergenic | 25.0% |
| ! | TAATCGCAATTCATTAAACA+AGG | + | chr3_1:41207748-41207767 | None:intergenic | 25.0% |
| !! | AATTAAATCATGGTGTTTTC+TGG | - | chr3_1:41207811-41207830 | Msa0357690:CDS | 25.0% |
| !!! | TGTTTTCTGGATTTATTTTC+AGG | - | chr3_1:41207824-41207843 | Msa0357690:CDS | 25.0% |
| !!! | AGTATGGTATCTTTTAAAGT+AGG | - | chr3_1:41207945-41207964 | Msa0357690:intron | 25.0% |
| !!! | GTATGGTATCTTTTAAAGTA+GGG | - | chr3_1:41207946-41207965 | Msa0357690:intron | 25.0% |
| !!! | TATGGTATCTTTTAAAGTAG+GGG | - | chr3_1:41207947-41207966 | Msa0357690:intron | 25.0% |
| !!! | AGTTTGGTATCTTTTAAAGT+AGG | - | chr3_1:41208077-41208096 | Msa0357690:five_prime_UTR | 25.0% |
| !!! | GTTTGGTATCTTTTAAAGTA+GGG | - | chr3_1:41208078-41208097 | Msa0357690:five_prime_UTR | 25.0% |
| ! | ATGCATGCTTCAAAATATTA+AGG | + | chr3_1:41208165-41208184 | None:intergenic | 25.0% |
| ! | AGAACCAAATAAATGGACTT+CGG | + | chr3_1:41205380-41205399 | None:intergenic | 30.0% |
| ! | AAATTTGGGATTTGAGAGAA+AGG | + | chr3_1:41205544-41205563 | None:intergenic | 30.0% |
| GAGGGTTTCAATAGAAATTT+GGG | + | chr3_1:41205558-41205577 | None:intergenic | 30.0% | |
| TGAGGGTTTCAATAGAAATT+TGG | + | chr3_1:41205559-41205578 | None:intergenic | 30.0% | |
| TGATTTCTCACTCAAAATGA+GGG | + | chr3_1:41205576-41205595 | None:intergenic | 30.0% | |
| ATGATTTCTCACTCAAAATG+AGG | + | chr3_1:41205577-41205596 | None:intergenic | 30.0% | |
| TTATAACTGCTTCATGGTTA+GGG | + | chr3_1:41205686-41205705 | None:intergenic | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | + | chr3_1:41206095-41206114 | None:intergenic | 30.0% | |
| TAATGTTTAGGTATGAAGCT+TGG | - | chr3_1:41206122-41206141 | Msa0357690:intron | 30.0% | |
| AGAAAACAGAAAATCATCAC+GGG | + | chr3_1:41206233-41206252 | None:intergenic | 30.0% | |
| CAGAAAACAGAAAATCATCA+CGG | + | chr3_1:41206234-41206253 | None:intergenic | 30.0% | |
| !! | GTTTTCTTGTTTCCTAATCT+TGG | - | chr3_1:41206488-41206507 | Msa0357690:intron | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+GGG | - | chr3_1:41206490-41206509 | Msa0357690:intron | 30.0% |
| !!! | CAGACCTTTTTTGATGTTTT+TGG | - | chr3_1:41206562-41206581 | Msa0357690:intron | 30.0% |
| ACAATGTGTAATTTGACTGA+AGG | - | chr3_1:41206620-41206639 | Msa0357690:intron | 30.0% | |
| !! | TCTTGGTTTGTTTGAAAAGA+TGG | - | chr3_1:41206692-41206711 | Msa0357690:intron | 30.0% |
| !! | CTTGGTTTGTTTGAAAAGAT+GGG | - | chr3_1:41206693-41206712 | Msa0357690:intron | 30.0% |
| TAGAAAATGGAAAAAGATGG+GGG | + | chr3_1:41206831-41206850 | None:intergenic | 30.0% | |
| CTAGAAAATGGAAAAAGATG+GGG | + | chr3_1:41206832-41206851 | None:intergenic | 30.0% | |
| ! | ATTTGATCGCTATCTTTTTG+TGG | - | chr3_1:41206998-41207017 | Msa0357690:intron | 30.0% |
| TTATCCAAGGATGAAAAAGT+CGG | + | chr3_1:41207046-41207065 | None:intergenic | 30.0% | |
| ! | TGTAAAGAGCATATTATCCA+AGG | + | chr3_1:41207059-41207078 | None:intergenic | 30.0% |
| TGGATAATATGCTCTTTACA+TGG | - | chr3_1:41207059-41207078 | Msa0357690:intron | 30.0% | |
| !! | TTTCTTGAGTGTAGTTCTAA+TGG | - | chr3_1:41207172-41207191 | Msa0357690:intron | 30.0% |
| !! | TTCTTGAGTGTAGTTCTAAT+GGG | - | chr3_1:41207173-41207192 | Msa0357690:intron | 30.0% |
| !! | TGCTTATTGATTTCAAATGG+AGG | - | chr3_1:41207265-41207284 | Msa0357690:intron | 30.0% |
| TCTAAAAAGTCGTCCTTATA+AGG | + | chr3_1:41207337-41207356 | None:intergenic | 30.0% | |
| ATGTTGTTCATTGCTTATTG+AGG | - | chr3_1:41207617-41207636 | Msa0357690:CDS | 30.0% | |
| CTTATTGAGGATTCAGATTA+GGG | - | chr3_1:41207630-41207649 | Msa0357690:CDS | 30.0% | |
| TGCTGAAGTCAATTAAATCA+TGG | - | chr3_1:41207801-41207820 | Msa0357690:CDS | 30.0% | |
| !!! | TTATTTTCAGGTCTCAAACA+TGG | - | chr3_1:41207836-41207855 | Msa0357690:CDS | 30.0% |
| TAACCATAGATTAGGTGTTA+AGG | - | chr3_1:41208023-41208042 | Msa0357690:intron | 30.0% | |
| AATCCTTAACACCTAATCTA+TGG | + | chr3_1:41208029-41208048 | None:intergenic | 30.0% | |
| ! | AGTACTTCAGTATCTTTTGA+AGG | - | chr3_1:41208109-41208128 | Msa0357690:five_prime_UTR | 30.0% |
| AGGATGTCTTATGAACAATT+TGG | - | chr3_1:41208129-41208148 | Msa0357690:five_prime_UTR | 30.0% | |
| GACAGAGAGAACCAAATAAA+TGG | + | chr3_1:41205387-41205406 | None:intergenic | 35.0% | |
| ACAAAACCTTCTCTGTGAAA+GGG | + | chr3_1:41205437-41205456 | None:intergenic | 35.0% | |
| TGCGTTAATCTTCAGTTTCA+AGG | - | chr3_1:41205503-41205522 | Msa0357690:three_prime_UTR | 35.0% | |
| GCGTTAATCTTCAGTTTCAA+GGG | - | chr3_1:41205504-41205523 | Msa0357690:three_prime_UTR | 35.0% | |
| CTTATAACTGCTTCATGGTT+AGG | + | chr3_1:41205687-41205706 | None:intergenic | 35.0% | |
| CTAACCATGAAGCAGTTATA+AGG | - | chr3_1:41205685-41205704 | Msa0357690:intron | 35.0% | |
| TGTTCCTTATAACTGCTTCA+TGG | + | chr3_1:41205692-41205711 | None:intergenic | 35.0% | |
| AGGAACAATGTCTTCAAAGA+AGG | - | chr3_1:41205705-41205724 | Msa0357690:three_prime_UTR | 35.0% | |
| TGCATAAGAGTTGCAACATT+TGG | - | chr3_1:41205730-41205749 | Msa0357690:three_prime_UTR | 35.0% | |
| TTCCACAATGTGCCAATATT+CGG | + | chr3_1:41205799-41205818 | None:intergenic | 35.0% | |
| ATAGGTATGGTGAACGAATA+GGG | + | chr3_1:41205926-41205945 | None:intergenic | 35.0% | |
| ! | AACCTTTTCCATGGTGTTTT+GGG | + | chr3_1:41205986-41206005 | None:intergenic | 35.0% |
| ! | TAACCTTTTCCATGGTGTTT+TGG | + | chr3_1:41205987-41206006 | None:intergenic | 35.0% |
| AAAACACCATGGAAAAGGTT+AGG | - | chr3_1:41205986-41206005 | Msa0357690:intron | 35.0% | |
| ! | AACAAACCTAACCTTTTCCA+TGG | + | chr3_1:41205995-41206014 | None:intergenic | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3_1:41206091-41206110 | Msa0357690:intron | 35.0% |
| ! | TTGGTTGAGTTGTTTCGTTA+GGG | - | chr3_1:41206141-41206160 | Msa0357690:intron | 35.0% |
| ! | TTTTCAGATAGATCACACAG+TGG | + | chr3_1:41206210-41206229 | None:intergenic | 35.0% |
| ! | CGTGATGATTTTCTGTTTTC+TGG | - | chr3_1:41206232-41206251 | Msa0357690:intron | 35.0% |
| AATCTGAGTTTCACTATGCT+AGG | - | chr3_1:41206258-41206277 | Msa0357690:intron | 35.0% | |
| GCTAGGATTATCTTCTATTC+CGG | - | chr3_1:41206275-41206294 | Msa0357690:intron | 35.0% | |
| CTAGGATTATCTTCTATTCC+GGG | - | chr3_1:41206276-41206295 | Msa0357690:intron | 35.0% | |
| ! | CTTCTTGTTAGTGATTTTGG+TGG | - | chr3_1:41206393-41206412 | Msa0357690:intron | 35.0% |
| !! | TTGTTAGTGATTTTGGTGGT+AGG | - | chr3_1:41206397-41206416 | Msa0357690:intron | 35.0% |
| !! | TTCTGTAGTTAGTCTTGTCT+AGG | - | chr3_1:41206433-41206452 | Msa0357690:intron | 35.0% |
| !! | TCTGTAGTTAGTCTTGTCTA+GGG | - | chr3_1:41206434-41206453 | Msa0357690:intron | 35.0% |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3_1:41206471-41206490 | None:intergenic | 35.0% | |
| ATGTGTAATTTGACTGAAGG+TGG | - | chr3_1:41206623-41206642 | Msa0357690:intron | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | - | chr3_1:41206624-41206643 | Msa0357690:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | + | chr3_1:41206742-41206761 | None:intergenic | 35.0% | |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3_1:41206740-41206759 | Msa0357690:intron | 35.0% |
| AGAAAATGGAAAAAGATGGG+GGG | + | chr3_1:41206830-41206849 | None:intergenic | 35.0% | |
| AGTCGGTTAAATACTTGCAT+TGG | + | chr3_1:41207029-41207048 | None:intergenic | 35.0% | |
| !!! | TTAACCGACTTTTTCATCCT+TGG | - | chr3_1:41207039-41207058 | Msa0357690:intron | 35.0% |
| TATGTGCAATTTAGCTGTGT+AGG | - | chr3_1:41207099-41207118 | Msa0357690:intron | 35.0% | |
| ATGTGCAATTTAGCTGTGTA+GGG | - | chr3_1:41207100-41207119 | Msa0357690:intron | 35.0% | |
| ! | AGTGCTTTTCTATTTCAGTG+TGG | - | chr3_1:41207226-41207245 | Msa0357690:intron | 35.0% |
| ! | AAGGACGACTTTTTAGATAG+TGG | - | chr3_1:41207340-41207359 | Msa0357690:intron | 35.0% |
| ! | ACAAACCGAAGAAAGCATAA+AGG | + | chr3_1:41207523-41207542 | None:intergenic | 35.0% |
| GCTTATTGAGGATTCAGATT+AGG | - | chr3_1:41207629-41207648 | Msa0357690:CDS | 35.0% | |
| TTGGACTTAGACTAACACTT+GGG | - | chr3_1:41207663-41207682 | Msa0357690:CDS | 35.0% | |
| AGTCTTGAGGATCATAGATA+TGG | - | chr3_1:41207693-41207712 | Msa0357690:CDS | 35.0% | |
| GATTTAACATGTAGTACTGC+AGG | - | chr3_1:41208045-41208064 | Msa0357690:intron | 35.0% | |
| !! | CTGCAGGATTTTTCAAAGTT+TGG | - | chr3_1:41208061-41208080 | Msa0357690:intron | 35.0% |
| !!! | TGGTATCTTTTAAAGTAGGG+TGG | - | chr3_1:41207949-41207968 | Msa0357690:intron | 35.0% |
| GACAAAACCTTCTCTGTGAA+AGG | + | chr3_1:41205438-41205457 | None:intergenic | 40.0% | |
| GGATTTGAGAGAAAGGAAGA+AGG | + | chr3_1:41205537-41205556 | None:intergenic | 40.0% | |
| TGCAACATTTGGAGACGTAT+TGG | - | chr3_1:41205741-41205760 | Msa0357690:intron | 40.0% | |
| CATTTGGAGACGTATTGGAT+TGG | - | chr3_1:41205746-41205765 | Msa0357690:intron | 40.0% | |
| TCCACAATGTGCCAATATTC+GGG | + | chr3_1:41205798-41205817 | None:intergenic | 40.0% | |
| GAAGAAGCTTATTCATGTCG+CGG | - | chr3_1:41205816-41205835 | Msa0357690:intron | 40.0% | |
| GATAGGTATGGTGAACGAAT+AGG | + | chr3_1:41205927-41205946 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | + | chr3_1:41205939-41205958 | None:intergenic | 40.0% | |
| ! | TGGATTAGGTTTGTCACTTG+TGG | - | chr3_1:41206044-41206063 | Msa0357690:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+GGG | - | chr3_1:41206045-41206064 | Msa0357690:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3_1:41206081-41206100 | Msa0357690:intron | 40.0% |
| ! | CTTGGTTGAGTTGTTTCGTT+AGG | - | chr3_1:41206140-41206159 | Msa0357690:intron | 40.0% |
| ! | TGGTTGAGTTGTTTCGTTAG+GGG | - | chr3_1:41206142-41206161 | Msa0357690:intron | 40.0% |
| TTATCTTCTATTCCGGGAAG+TGG | - | chr3_1:41206282-41206301 | Msa0357690:intron | 40.0% | |
| AAAGGGAGTGGCAATGATTA+GGG | + | chr3_1:41206322-41206341 | None:intergenic | 40.0% | |
| TAAAGGGAGTGGCAATGATT+AGG | + | chr3_1:41206323-41206342 | None:intergenic | 40.0% | |
| AAACACTTCCCACAGAGAAT+TGG | + | chr3_1:41206362-41206381 | None:intergenic | 40.0% | |
| !!! | TTCTCTGTGGGAAGTGTTTT+TGG | - | chr3_1:41206363-41206382 | Msa0357690:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3_1:41206466-41206485 | Msa0357690:intron | 40.0% |
| TTACACACTTCACAAGGTGA+AGG | - | chr3_1:41206716-41206735 | Msa0357690:intron | 40.0% | |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3_1:41206737-41206756 | Msa0357690:intron | 40.0% |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3_1:41206770-41206789 | Msa0357690:intron | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3_1:41206771-41206790 | Msa0357690:intron | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3_1:41206772-41206791 | Msa0357690:intron | 40.0% | |
| TCTGTATATTGTGCTCTGTC+TGG | - | chr3_1:41207485-41207504 | Msa0357690:intron | 40.0% | |
| ATTGAGGATTCAGATTAGGG+TGG | - | chr3_1:41207633-41207652 | Msa0357690:CDS | 40.0% | |
| TTGAGGATTCAGATTAGGGT+GGG | - | chr3_1:41207634-41207653 | Msa0357690:CDS | 40.0% | |
| GTTGGACTTAGACTAACACT+TGG | - | chr3_1:41207662-41207681 | Msa0357690:CDS | 40.0% | |
| CTTGGGACTAAAAAGTCTTG+AGG | - | chr3_1:41207680-41207699 | Msa0357690:CDS | 40.0% | |
| ! | TAATCTTGACTGGCTGAAGA+AGG | + | chr3_1:41207885-41207904 | None:intergenic | 40.0% |
| TTCTTCAGCCAGTCAAGATT+AGG | - | chr3_1:41207884-41207903 | Msa0357690:intron | 40.0% | |
| CCTTAACACCTAATCTTGAC+TGG | + | chr3_1:41207895-41207914 | None:intergenic | 40.0% | |
| CCAGTCAAGATTAGGTGTTA+AGG | - | chr3_1:41207892-41207911 | Msa0357690:intron | 40.0% | |
| !!! | GGTATCTTTTAAAGTAGGGG+TGG | - | chr3_1:41207950-41207969 | Msa0357690:intron | 40.0% |
| CTGAGTAGTGAGAGGAAATA+TGG | - | chr3_1:41208199-41208218 | Msa0357690:five_prime_UTR | 40.0% | |
| TTCTCTGTGAAAGGGTTTCG+CGG | + | chr3_1:41205429-41205448 | None:intergenic | 45.0% | |
| !! | GAAGGTTTTGTCCCATTGCT+CGG | - | chr3_1:41205446-41205465 | Msa0357690:three_prime_UTR | 45.0% |
| AAGGTGAAGAGGAAGAGGAA+GGG | - | chr3_1:41205878-41205897 | Msa0357690:intron | 45.0% | |
| ATAGGGAGGCGATACTAAAG+TGG | + | chr3_1:41205909-41205928 | None:intergenic | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | - | chr3_1:41205934-41205953 | Msa0357690:intron | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | + | chr3_1:41205944-41205963 | None:intergenic | 45.0% | |
| !! | CTTTTCCATGGTGTTTTGGG+CGG | + | chr3_1:41205983-41206002 | None:intergenic | 45.0% |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | - | chr3_1:41206057-41206076 | Msa0357690:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | - | chr3_1:41206058-41206077 | Msa0357690:intron | 45.0% |
| TAGCGTATAGGGTGTGGTAT+AGG | - | chr3_1:41206069-41206088 | Msa0357690:intron | 45.0% | |
| ! | TTGAGTTGTTTCGTTAGGGG+TGG | - | chr3_1:41206145-41206164 | Msa0357690:intron | 45.0% |
| ! | TGAGTTGTTTCGTTAGGGGT+GGG | - | chr3_1:41206146-41206165 | Msa0357690:intron | 45.0% |
| TATTCCGGGAAGTGGTTCTT+CGG | - | chr3_1:41206290-41206309 | Msa0357690:intron | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3_1:41206327-41206346 | Msa0357690:intron | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3_1:41206328-41206347 | Msa0357690:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | + | chr3_1:41206339-41206358 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | - | chr3_1:41206351-41206370 | Msa0357690:intron | 45.0% | |
| TGTTTCCTAATCTTGGGGTG+CGG | - | chr3_1:41206495-41206514 | Msa0357690:intron | 45.0% | |
| AAAATCCGCACCCCAAGATT+AGG | + | chr3_1:41206503-41206522 | None:intergenic | 45.0% | |
| !! | GATGGGTTACACACTTCACA+AGG | - | chr3_1:41206710-41206729 | Msa0357690:intron | 45.0% |
| TGCAATTTAGCTGTGTAGGG+TGG | - | chr3_1:41207103-41207122 | Msa0357690:intron | 45.0% | |
| GCAATTTAGCTGTGTAGGGT+GGG | - | chr3_1:41207104-41207123 | Msa0357690:intron | 45.0% | |
| TGAGGATTCAGATTAGGGTG+GGG | - | chr3_1:41207635-41207654 | Msa0357690:CDS | 45.0% | |
| !! | AGATTAGGGTGGGGTTTTGT+TGG | - | chr3_1:41207644-41207663 | Msa0357690:CDS | 45.0% |
| GCGAAACCCTTTCACAGAGA+AGG | - | chr3_1:41205428-41205447 | Msa0357690:three_prime_UTR | 50.0% | |
| AGATTAACGCAGCGACCGTA+CGG | + | chr3_1:41205494-41205513 | None:intergenic | 50.0% | |
| CTCGTTACTCGCCCGAATAT+TGG | - | chr3_1:41205784-41205803 | Msa0357690:intron | 50.0% | |
| GCCCGAATATTGGCACATTG+TGG | - | chr3_1:41205794-41205813 | Msa0357690:intron | 50.0% | |
| GTTGCTTACCTCCTCTCTGA+AGG | - | chr3_1:41205859-41205878 | Msa0357690:intron | 50.0% | |
| CTTCCTCTTCACCTTCAGAG+AGG | + | chr3_1:41205873-41205892 | None:intergenic | 50.0% | |
| ! | CTCTGAAGGTGAAGAGGAAG+AGG | - | chr3_1:41205873-41205892 | Msa0357690:intron | 50.0% |
| GAAGGTGAAGAGGAAGAGGA+AGG | - | chr3_1:41205877-41205896 | Msa0357690:intron | 50.0% | |
| GGTATGGTGAACGAATAGGG+AGG | + | chr3_1:41205923-41205942 | None:intergenic | 50.0% | |
| CGCCCAAAACACCATGGAAA+AGG | - | chr3_1:41205981-41206000 | Msa0357690:intron | 50.0% | |
| TTGTTTCGTTAGGGGTGGGA+AGG | - | chr3_1:41206150-41206169 | Msa0357690:intron | 50.0% | |
| TTCACCGAAGAACCACTTCC+CGG | + | chr3_1:41206297-41206316 | None:intergenic | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | + | chr3_1:41206340-41206359 | None:intergenic | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | - | chr3_1:41206350-41206369 | Msa0357690:intron | 50.0% | |
| !! | GTCTTGTCTAGGGAGTGTTC+TGG | - | chr3_1:41206444-41206463 | Msa0357690:intron | 50.0% |
| ! | TTGGGGTGCGGATTTTCTCT+AGG | - | chr3_1:41206507-41206526 | Msa0357690:intron | 50.0% |
| AAGAGCAACTCTGCAGCTCT+TGG | - | chr3_1:41206675-41206694 | Msa0357690:intron | 50.0% | |
| AGGAGGACGCTATTGTCTTG+AGG | - | chr3_1:41206757-41206776 | Msa0357690:intron | 50.0% | |
| TGGAAAAAGATGGGGGGAGT+GGG | + | chr3_1:41206824-41206843 | None:intergenic | 50.0% | |
| ATGGAAAAAGATGGGGGGAG+TGG | + | chr3_1:41206825-41206844 | None:intergenic | 50.0% | |
| TCAAACATGGATTCTCCCGC+AGG | - | chr3_1:41207849-41207868 | Msa0357690:CDS | 50.0% | |
| !! | AGTGAGTGCTGAGTAGTGAG+AGG | - | chr3_1:41208191-41208210 | Msa0357690:five_prime_UTR | 50.0% |
| GTGGATCTGCTCCGAGCAAT+GGG | + | chr3_1:41205460-41205479 | None:intergenic | 55.0% | |
| CATGTCGCGGACAATTGCAG+CGG | - | chr3_1:41205829-41205848 | Msa0357690:intron | 55.0% | |
| CCTCTTCACCTTCAGAGAGG+AGG | + | chr3_1:41205870-41205889 | None:intergenic | 55.0% | |
| ! | CCTCCTCTCTGAAGGTGAAG+AGG | - | chr3_1:41205867-41205886 | Msa0357690:intron | 55.0% |
| !! | TTCCATGGTGTTTTGGGCGG+CGG | + | chr3_1:41205980-41205999 | None:intergenic | 55.0% |
| !! | GTGGGTTAGCGTATAGGGTG+TGG | - | chr3_1:41206063-41206082 | Msa0357690:intron | 55.0% |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3_1:41206334-41206353 | None:intergenic | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3_1:41206331-41206350 | Msa0357690:intron | 55.0% | |
| CTGCAGGTCTCAAGGTAGAG+AGG | + | chr3_1:41206534-41206553 | None:intergenic | 55.0% | |
| TACAGCAGCTGCAGGTCTCA+AGG | + | chr3_1:41206542-41206561 | None:intergenic | 55.0% | |
| AAGGTCTGTACAGCAGCTGC+AGG | + | chr3_1:41206550-41206569 | None:intergenic | 55.0% | |
| AAGACGTCTCAGTGCACGTC+CGG | - | chr3_1:41206652-41206671 | Msa0357690:intron | 55.0% | |
| GAGCTGCAGAGTTGCTCTTC+CGG | + | chr3_1:41206674-41206693 | None:intergenic | 55.0% | |
| GAGTGGGTCTCACAGTTAGG+TGG | + | chr3_1:41206808-41206827 | None:intergenic | 55.0% | |
| AACATGGATTCTCCCGCAGG+AGG | - | chr3_1:41207852-41207871 | Msa0357690:CDS | 55.0% | |
| AGAAGGTCTTCCTCCTCCTG+CGG | + | chr3_1:41207868-41207887 | None:intergenic | 55.0% | |
| GGTGGATCTGCTCCGAGCAA+TGG | + | chr3_1:41205461-41205480 | None:intergenic | 60.0% | |
| TCGGAGCAGATCCACCGTGT+CGG | - | chr3_1:41205465-41205484 | Msa0357690:three_prime_UTR | 60.0% | |
| TAGGGGTGGGAAGGCAGAGT+AGG | - | chr3_1:41206159-41206178 | Msa0357690:intron | 60.0% | |
| GTGGGAAGGCAGAGTAGGCT+AGG | - | chr3_1:41206164-41206183 | Msa0357690:intron | 60.0% | |
| GGGGAGTGGGTCTCACAGTT+AGG | + | chr3_1:41206811-41206830 | None:intergenic | 60.0% | |
| GTGGGCGTGAGGTCAGACTT+TGG | - | chr3_1:41207122-41207141 | Msa0357690:intron | 60.0% | |
| ATGGATTCTCCCGCAGGAGG+AGG | - | chr3_1:41207855-41207874 | Msa0357690:CDS | 60.0% | |
| GAAGGTCTTCCTCCTCCTGC+GGG | + | chr3_1:41207867-41207886 | None:intergenic | 60.0% | |
| GAGCAGATCCACCGTGTCGG+AGG | - | chr3_1:41205468-41205487 | Msa0357690:three_prime_UTR | 65.0% | |
| CACCGCCGCCCAAAACACCA+TGG | - | chr3_1:41205975-41205994 | Msa0357690:intron | 65.0% | |
| AGCTGTGTAGGGTGGGCGTG+AGG | - | chr3_1:41207111-41207130 | Msa0357690:intron | 65.0% | |
| CCACCGTGTCGGAGGCCGTA+CGG | - | chr3_1:41205476-41205495 | Msa0357690:three_prime_UTR | 70.0% | |
| CGACCGTACGGCCTCCGACA+CGG | + | chr3_1:41205482-41205501 | None:intergenic | 70.0% | |
| CCGTACGGCCTCCGACACGG+TGG | + | chr3_1:41205479-41205498 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 41205377 | 41208222 | 41205377 | ID=Msa0357690;Name=Msa0357690 |
| chr3_1 | mRNA | 41205377 | 41208222 | 41205377 | ID=Msa0357690-mRNA-1;Parent=Msa0357690;Name=Msa0357690-mRNA-1;_AED=0.11;_eAED=0.11;_QI=161|1|1|1|0.2|0.16|6|297|153 |
| chr3_1 | exon | 41205377 | 41205544 | 41205377 | ID=Msa0357690-mRNA-1:exon:7192;Parent=Msa0357690-mRNA-1 |
| chr3_1 | exon | 41205605 | 41205671 | 41205605 | ID=Msa0357690-mRNA-1:exon:7191;Parent=Msa0357690-mRNA-1 |
| chr3_1 | exon | 41205694 | 41205753 | 41205694 | ID=Msa0357690-mRNA-1:exon:7190;Parent=Msa0357690-mRNA-1 |
| chr3_1 | exon | 41206785 | 41206957 | 41206785 | ID=Msa0357690-mRNA-1:exon:7189;Parent=Msa0357690-mRNA-1 |
| chr3_1 | exon | 41207597 | 41207899 | 41207597 | ID=Msa0357690-mRNA-1:exon:7188;Parent=Msa0357690-mRNA-1 |
| chr3_1 | exon | 41208074 | 41208222 | 41208074 | ID=Msa0357690-mRNA-1:exon:7187;Parent=Msa0357690-mRNA-1 |
| chr3_1 | five_prime_UTR | 41208074 | 41208222 | 41208074 | ID=Msa0357690-mRNA-1:five_prime_utr;Parent=Msa0357690-mRNA-1 |
| chr3_1 | five_prime_UTR | 41207888 | 41207899 | 41207888 | ID=Msa0357690-mRNA-1:five_prime_utr;Parent=Msa0357690-mRNA-1 |
| chr3_1 | CDS | 41207597 | 41207887 | 41207597 | ID=Msa0357690-mRNA-1:cds;Parent=Msa0357690-mRNA-1 |
| chr3_1 | CDS | 41206787 | 41206957 | 41206787 | ID=Msa0357690-mRNA-1:cds;Parent=Msa0357690-mRNA-1 |
| chr3_1 | three_prime_UTR | 41206785 | 41206786 | 41206785 | ID=Msa0357690-mRNA-1:three_prime_utr;Parent=Msa0357690-mRNA-1 |
| chr3_1 | three_prime_UTR | 41205694 | 41205753 | 41205694 | ID=Msa0357690-mRNA-1:three_prime_utr;Parent=Msa0357690-mRNA-1 |
| chr3_1 | three_prime_UTR | 41205605 | 41205671 | 41205605 | ID=Msa0357690-mRNA-1:three_prime_utr;Parent=Msa0357690-mRNA-1 |
| chr3_1 | three_prime_UTR | 41205377 | 41205544 | 41205377 | ID=Msa0357690-mRNA-1:three_prime_utr;Parent=Msa0357690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
