Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358380 | XP_024635817.1 | 59.322 | 354 | 79 | 9 | 20 | 328 | 30 | 363 | 3.69e-96 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358380 | sp|Q6K5K2|Y2982_ORYSJ | 39.216 | 102 | 53 | 2 | 53 | 147 | 392 | 491 | 2.93e-13 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358380 | A0A072V0U1 | 76.496 | 234 | 39 | 6 | 20 | 249 | 30 | 251 | 6.15e-92 | 284 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0358380 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358380 | MtrunA17_Chr3g0116411 | 65.818 | 275 | 41 | 6 | 20 | 251 | 30 | 294 | 1.42e-90 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACAACTTCTACGCTATT+TGG | 0.184746 | 3_1:+43166613 | None:intergenic |
| TTCAGCAAACAGATCCTTAT+TGG | 0.209131 | 3_1:+43165881 | None:intergenic |
| TTCAGCAAACAGGTCCTTAT+TGG | 0.223966 | 3_1:+43166095 | None:intergenic |
| GCATGTGAACTTGAAACTTC+TGG | 0.292503 | 3_1:-43165933 | Msa0358380:CDS |
| GCATGTGAACTTGAAACTTC+TGG | 0.292503 | 3_1:-43166147 | Msa0358380:CDS |
| CAGATCCTTATTGGACATAA+TGG | 0.316742 | 3_1:+43165890 | None:intergenic |
| AAGATGGTAATGTAGATAGA+AGG | 0.318676 | 3_1:-43166588 | Msa0358380:CDS |
| TCGGCTCACAAGCTTGAAAA+AGG | 0.326977 | 3_1:-43166811 | Msa0358380:CDS |
| ACTTGACGTGCCAATGCATA+TGG | 0.351764 | 3_1:-43166656 | Msa0358380:CDS |
| AGAATCCATTATGTCCAATA+AGG | 0.374966 | 3_1:-43165895 | Msa0358380:CDS |
| AGAATCCATTATGTCCAATA+AGG | 0.374966 | 3_1:-43166109 | Msa0358380:CDS |
| AGCCAAGTCACCGAGAGTTT+TGG | 0.375722 | 3_1:-43166391 | Msa0358380:intron |
| TGTTACAGCCCATCTCTTAC+CGG | 0.383658 | 3_1:+43166888 | None:intergenic |
| CAGGTCCTTATTGGACATAA+TGG | 0.407699 | 3_1:+43166104 | None:intergenic |
| TTTGAAGAAGTGTTGGGCTC+AGG | 0.414789 | 3_1:-43166475 | Msa0358380:CDS |
| AGCCCATCTCTTACCGGTTG+AGG | 0.418637 | 3_1:+43166894 | None:intergenic |
| CTCATACGCTTCTAAATCGT+TGG | 0.425403 | 3_1:-43166446 | Msa0358380:CDS |
| CTCGAGGATTCAACCTCAAC+CGG | 0.431548 | 3_1:-43166907 | Msa0358380:CDS |
| CAACGATTTAGAAGCGTATG+AGG | 0.431571 | 3_1:+43166447 | None:intergenic |
| AAATCCTACCATGTCATTGT+TGG | 0.435100 | 3_1:-43166947 | Msa0358380:CDS |
| GTAGAAGTTGTTTCAGAAGA+TGG | 0.439449 | 3_1:-43166604 | Msa0358380:CDS |
| TACCTAAGCCTTCAGCAAAC+AGG | 0.461021 | 3_1:+43166085 | None:intergenic |
| TTCTCTCTCAGTGCTCTGAA+TGG | 0.466164 | 3_1:+43167625 | None:intergenic |
| ACTTCAACTTTCTCCAACCT+AGG | 0.470273 | 3_1:-43167666 | Msa0358380:CDS |
| CTTGACGTGCCAATGCATAT+GGG | 0.487224 | 3_1:-43166655 | Msa0358380:CDS |
| GATCTGTTTGCTGAAGGCTT+AGG | 0.490003 | 3_1:-43165873 | None:intergenic |
| TACCAAAACTCTCGGTGACT+TGG | 0.498675 | 3_1:+43166389 | None:intergenic |
| TTGTTGAAGCGGTGGGAGGC+AGG | 0.504223 | 3_1:+43167691 | None:intergenic |
| ATGATAAGTCTATGTGTGAA+AGG | 0.505569 | 3_1:-43166735 | Msa0358380:CDS |
| AGATGGTAATGTAGATAGAA+GGG | 0.509570 | 3_1:-43166587 | Msa0358380:CDS |
| TGAAAAGGAAAACCCTAGGT+TGG | 0.525045 | 3_1:+43167653 | None:intergenic |
| CAACCTCAACCGGTAAGAGA+TGG | 0.526023 | 3_1:-43166897 | Msa0358380:CDS |
| TTGAAGAAGTGTTGGGCTCA+GGG | 0.526257 | 3_1:-43166474 | Msa0358380:CDS |
| CTCTGAATGGAAGAATGAAA+AGG | 0.527533 | 3_1:+43167638 | None:intergenic |
| TCCTATGTTTGAAGAAGTGT+TGG | 0.533675 | 3_1:-43166482 | Msa0358380:CDS |
| CTTCAACTTTCTCCAACCTA+GGG | 0.533856 | 3_1:-43167665 | Msa0358380:CDS |
| GACCTGTTTGCTGAAGGCTT+AGG | 0.536114 | 3_1:-43166087 | Msa0358380:intron |
| GATCAAGCAGCGAAATTCAA+AGG | 0.540326 | 3_1:-43166186 | Msa0358380:CDS |
| ATGGTAGGATTTAACTTAGG+AGG | 0.553387 | 3_1:+43166958 | None:intergenic |
| TTGACGTGCCAATGCATATG+GGG | 0.554500 | 3_1:-43166654 | Msa0358380:CDS |
| GATCAAGCAGCGATATTCAA+AGG | 0.555526 | 3_1:-43165972 | Msa0358380:CDS |
| AATAAGGACCTGTTTGCTGA+AGG | 0.555855 | 3_1:-43166093 | Msa0358380:CDS |
| AACCTCAACCGGTAAGAGAT+GGG | 0.557870 | 3_1:-43166896 | Msa0358380:CDS |
| AATAAGGATCTGTTTGCTGA+AGG | 0.559694 | 3_1:-43165879 | Msa0358380:CDS |
| ATGCATCATTTAGATCTACA+TGG | 0.559779 | 3_1:+43166521 | None:intergenic |
| CCTACCATGTCATTGTTGGT+TGG | 0.564330 | 3_1:-43166943 | Msa0358380:CDS |
| AAGAGAAGTAGATGCAGCAG+TGG | 0.569759 | 3_1:-43166682 | Msa0358380:CDS |
| AATTATGGTACCAAAACTCT+CGG | 0.575030 | 3_1:+43166381 | None:intergenic |
| ACTTCTGGAAGAAGCAAAGA+GGG | 0.576572 | 3_1:-43165918 | Msa0358380:CDS |
| ACTTCTGGAAGAAGCAAAGA+GGG | 0.576572 | 3_1:-43166132 | Msa0358380:CDS |
| AGTTGAAGTGTTTGTTGAAG+CGG | 0.591745 | 3_1:+43167680 | None:intergenic |
| GACATGGTAGGATTTAACTT+AGG | 0.591746 | 3_1:+43166955 | None:intergenic |
| CCCAACACTTCTTCAAACAT+AGG | 0.592689 | 3_1:+43166481 | None:intergenic |
| CCAACCAACAATGACATGGT+AGG | 0.598154 | 3_1:+43166943 | None:intergenic |
| TGAAGTGTTTGTTGAAGCGG+TGG | 0.598358 | 3_1:+43167683 | None:intergenic |
| CCTATGTTTGAAGAAGTGTT+GGG | 0.601870 | 3_1:-43166481 | Msa0358380:CDS |
| TGATAAGTCTATGTGTGAAA+GGG | 0.602703 | 3_1:-43166734 | Msa0358380:CDS |
| GTAACAGTATCAAAAGCTGA+TGG | 0.606610 | 3_1:-43166871 | Msa0358380:CDS |
| CTTACCAACCAACAATGACA+TGG | 0.609549 | 3_1:+43166939 | None:intergenic |
| AGAGAAGAAGAACAGTGCAA+TGG | 0.611095 | 3_1:-43167608 | Msa0358380:CDS |
| AGAATGAAAAGGAAAACCCT+AGG | 0.617509 | 3_1:+43167649 | None:intergenic |
| AACTTCTGGAAGAAGCAAAG+AGG | 0.635663 | 3_1:-43165919 | Msa0358380:CDS |
| AACTTCTGGAAGAAGCAAAG+AGG | 0.635663 | 3_1:-43166133 | Msa0358380:CDS |
| TGAAGAAGTGTTGGGCTCAG+GGG | 0.642137 | 3_1:-43166473 | Msa0358380:CDS |
| TGGTAAGAAAATCTATCTCG+AGG | 0.647585 | 3_1:-43166923 | Msa0358380:CDS |
| GTGTTTGTTGAAGCGGTGGG+AGG | 0.664310 | 3_1:+43167687 | None:intergenic |
| GAAGTGTTTGTTGAAGCGGT+GGG | 0.681484 | 3_1:+43167684 | None:intergenic |
| TGACGTGCCAATGCATATGG+GGG | 0.743356 | 3_1:-43166653 | Msa0358380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTTTGTTTTGTAAT+GGG | - | chr3_1:43167246-43167265 | Msa0358380:intron | 15.0% |
| !! | AAGATAAATATTTCTTAACT+TGG | - | chr3_1:43167271-43167290 | Msa0358380:intron | 15.0% |
| !! | TGTTAATTATTTCATTACAT+TGG | - | chr3_1:43167582-43167601 | Msa0358380:intron | 15.0% |
| !!! | TTTGTTTTTTGTTTTGTAAT+GGG | - | chr3_1:43167246-43167265 | Msa0358380:intron | 15.0% |
| !! | AAGATAAATATTTCTTAACT+TGG | - | chr3_1:43167271-43167290 | Msa0358380:intron | 15.0% |
| !! | TGTTAATTATTTCATTACAT+TGG | - | chr3_1:43167582-43167601 | Msa0358380:intron | 15.0% |
| !!! | AGCGAATATTTATTTTGTTA+AGG | - | chr3_1:43166468-43166487 | Msa0358380:CDS | 20.0% |
| !!! | TAACATTTTTTTTAAACTGC+AGG | - | chr3_1:43166607-43166626 | Msa0358380:CDS | 20.0% |
| !!! | ATTTTTCTGAAAAAAGAAAG+AGG | - | chr3_1:43166885-43166904 | Msa0358380:CDS | 20.0% |
| !! | CAAAGTTATTGTGTAAATTA+TGG | + | chr3_1:43167230-43167249 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTTTGTTTTGTAA+TGG | - | chr3_1:43167245-43167264 | Msa0358380:intron | 20.0% |
| !! | AATAATAAAAAACCAACTGT+AGG | + | chr3_1:43167359-43167378 | None:intergenic | 20.0% |
| !!! | AGCGAATATTTATTTTGTTA+AGG | - | chr3_1:43166468-43166487 | Msa0358380:CDS | 20.0% |
| !!! | TAACATTTTTTTTAAACTGC+AGG | - | chr3_1:43166607-43166626 | Msa0358380:CDS | 20.0% |
| !!! | ATTTTTCTGAAAAAAGAAAG+AGG | - | chr3_1:43166885-43166904 | Msa0358380:CDS | 20.0% |
| !! | CAAAGTTATTGTGTAAATTA+TGG | + | chr3_1:43167230-43167249 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTTTGTTTTGTAA+TGG | - | chr3_1:43167245-43167264 | Msa0358380:intron | 20.0% |
| !! | AATAATAAAAAACCAACTGT+AGG | + | chr3_1:43167359-43167378 | None:intergenic | 20.0% |
| !! | TCAAAGCGATTTCAAAATTT+TGG | - | chr3_1:43166123-43166142 | Msa0358380:CDS | 25.0% |
| ! | AAAAGGAAAGTAAAATGTTG+AGG | + | chr3_1:43166163-43166182 | None:intergenic | 25.0% |
| ! | AAAGATGCAAAGTAAAATCA+TGG | - | chr3_1:43166349-43166368 | Msa0358380:intron | 25.0% |
| ! | CGTTGGAAAGAAAAAAAAAT+TGG | - | chr3_1:43167164-43167183 | Msa0358380:intron | 25.0% |
| !!! | ACATTTCATTGCTCATTTTT+AGG | - | chr3_1:43167380-43167399 | Msa0358380:intron | 25.0% |
| !! | TCAAAGCGATTTCAAAATTT+TGG | - | chr3_1:43166123-43166142 | Msa0358380:CDS | 25.0% |
| ! | AAAAGGAAAGTAAAATGTTG+AGG | + | chr3_1:43166163-43166182 | None:intergenic | 25.0% |
| ! | AAAGATGCAAAGTAAAATCA+TGG | - | chr3_1:43166349-43166368 | Msa0358380:intron | 25.0% |
| ! | CGTTGGAAAGAAAAAAAAAT+TGG | - | chr3_1:43167164-43167183 | Msa0358380:intron | 25.0% |
| !!! | ACATTTCATTGCTCATTTTT+AGG | - | chr3_1:43167380-43167399 | Msa0358380:intron | 25.0% |
| TGAGCAAGTTAGAAATGAAA+AGG | + | chr3_1:43166180-43166199 | None:intergenic | 30.0% | |
| !!! | GCCACTTGATTTTGATTTAA+TGG | - | chr3_1:43166233-43166252 | Msa0358380:intron | 30.0% |
| GCCATTAAATCAAAATCAAG+TGG | + | chr3_1:43166237-43166256 | None:intergenic | 30.0% | |
| AACCATTTGAATGGAACTTT+AGG | + | chr3_1:43166278-43166297 | None:intergenic | 30.0% | |
| ! | GTATGCACTTCTTAACATTT+TGG | + | chr3_1:43166312-43166331 | None:intergenic | 30.0% |
| ! | TCTTTTACAAGATCTGTAAC+AGG | + | chr3_1:43166334-43166353 | None:intergenic | 30.0% |
| ATATGCAGCATCATAATTCA+TGG | + | chr3_1:43166584-43166603 | None:intergenic | 30.0% | |
| !! | TGATGGTTCTTTTGCTTTTA+AGG | - | chr3_1:43166739-43166758 | Msa0358380:CDS | 30.0% |
| !! | TTTTGCTTTTAAGGAAGGAT+GGG | - | chr3_1:43166748-43166767 | Msa0358380:CDS | 30.0% |
| ! | GCTTGAAAAAGGATATTTTC+TGG | - | chr3_1:43166793-43166812 | Msa0358380:CDS | 30.0% |
| ATGATAAGTCTATGTGTGAA+AGG | - | chr3_1:43166858-43166877 | Msa0358380:CDS | 30.0% | |
| TGATAAGTCTATGTGTGAAA+GGG | - | chr3_1:43166859-43166878 | Msa0358380:CDS | 30.0% | |
| ! | AAGATGGTAATGTAGATAGA+AGG | - | chr3_1:43167005-43167024 | Msa0358380:intron | 30.0% |
| ! | AGATGGTAATGTAGATAGAA+GGG | - | chr3_1:43167006-43167025 | Msa0358380:intron | 30.0% |
| ATGCATCATTTAGATCTACA+TGG | + | chr3_1:43167075-43167094 | None:intergenic | 30.0% | |
| AATTATGGTACCAAAACTCT+CGG | + | chr3_1:43167215-43167234 | None:intergenic | 30.0% | |
| ACTTGGTTGTTTATACTTGT+AGG | - | chr3_1:43167288-43167307 | Msa0358380:intron | 30.0% | |
| CTTGGTTGTTTATACTTGTA+GGG | - | chr3_1:43167289-43167308 | Msa0358380:intron | 30.0% | |
| AGAATCCATTATGTCCAATA+AGG | - | chr3_1:43167484-43167503 | Msa0358380:intron | 30.0% | |
| ! | CTTCTTGTTCATTTTGTTGA+CGG | - | chr3_1:43167549-43167568 | Msa0358380:intron | 30.0% |
| !!! | CATTACATTGGCTCATTTTT+AGG | - | chr3_1:43167594-43167613 | Msa0358380:CDS | 30.0% |
| AGAATCCATTATGTCCAATA+AGG | - | chr3_1:43167484-43167503 | Msa0358380:intron | 30.0% | |
| TGAGCAAGTTAGAAATGAAA+AGG | + | chr3_1:43166180-43166199 | None:intergenic | 30.0% | |
| !!! | GCCACTTGATTTTGATTTAA+TGG | - | chr3_1:43166233-43166252 | Msa0358380:intron | 30.0% |
| GCCATTAAATCAAAATCAAG+TGG | + | chr3_1:43166237-43166256 | None:intergenic | 30.0% | |
| AACCATTTGAATGGAACTTT+AGG | + | chr3_1:43166278-43166297 | None:intergenic | 30.0% | |
| ! | GTATGCACTTCTTAACATTT+TGG | + | chr3_1:43166312-43166331 | None:intergenic | 30.0% |
| ! | TCTTTTACAAGATCTGTAAC+AGG | + | chr3_1:43166334-43166353 | None:intergenic | 30.0% |
| ATATGCAGCATCATAATTCA+TGG | + | chr3_1:43166584-43166603 | None:intergenic | 30.0% | |
| !! | TGATGGTTCTTTTGCTTTTA+AGG | - | chr3_1:43166739-43166758 | Msa0358380:CDS | 30.0% |
| !! | TTTTGCTTTTAAGGAAGGAT+GGG | - | chr3_1:43166748-43166767 | Msa0358380:CDS | 30.0% |
| ! | GCTTGAAAAAGGATATTTTC+TGG | - | chr3_1:43166793-43166812 | Msa0358380:CDS | 30.0% |
| ATGATAAGTCTATGTGTGAA+AGG | - | chr3_1:43166858-43166877 | Msa0358380:CDS | 30.0% | |
| TGATAAGTCTATGTGTGAAA+GGG | - | chr3_1:43166859-43166878 | Msa0358380:CDS | 30.0% | |
| ! | AAGATGGTAATGTAGATAGA+AGG | - | chr3_1:43167005-43167024 | Msa0358380:intron | 30.0% |
| ! | AGATGGTAATGTAGATAGAA+GGG | - | chr3_1:43167006-43167025 | Msa0358380:intron | 30.0% |
| ATGCATCATTTAGATCTACA+TGG | + | chr3_1:43167075-43167094 | None:intergenic | 30.0% | |
| AATTATGGTACCAAAACTCT+CGG | + | chr3_1:43167215-43167234 | None:intergenic | 30.0% | |
| ACTTGGTTGTTTATACTTGT+AGG | - | chr3_1:43167288-43167307 | Msa0358380:intron | 30.0% | |
| CTTGGTTGTTTATACTTGTA+GGG | - | chr3_1:43167289-43167308 | Msa0358380:intron | 30.0% | |
| AGAATCCATTATGTCCAATA+AGG | - | chr3_1:43167484-43167503 | Msa0358380:intron | 30.0% | |
| ! | CTTCTTGTTCATTTTGTTGA+CGG | - | chr3_1:43167549-43167568 | Msa0358380:intron | 30.0% |
| !!! | CATTACATTGGCTCATTTTT+AGG | - | chr3_1:43167594-43167613 | Msa0358380:CDS | 30.0% |
| AGAATCCATTATGTCCAATA+AGG | - | chr3_1:43167484-43167503 | Msa0358380:intron | 30.0% | |
| ! | AGTTGAAGTGTTTGTTGAAG+CGG | + | chr3_1:43165916-43165935 | None:intergenic | 35.0% |
| AGAATGAAAAGGAAAACCCT+AGG | + | chr3_1:43165947-43165966 | None:intergenic | 35.0% | |
| CTCTGAATGGAAGAATGAAA+AGG | + | chr3_1:43165958-43165977 | None:intergenic | 35.0% | |
| AGTGATGAAAGAATCTACAG+TGG | + | chr3_1:43166051-43166070 | None:intergenic | 35.0% | |
| AATGGCTAAATATGCAAAGC+AGG | - | chr3_1:43166251-43166270 | Msa0358380:intron | 35.0% | |
| GACCTAAAGTTCCATTCAAA+TGG | - | chr3_1:43166273-43166292 | Msa0358380:intron | 35.0% | |
| GATGCAAAGTAAAATCATGG+TGG | - | chr3_1:43166352-43166371 | Msa0358380:intron | 35.0% | |
| GAACAGTTTGGTATCAAGTT+AGG | + | chr3_1:43166398-43166417 | None:intergenic | 35.0% | |
| TTGATACCAAACTGTTCACA+TGG | - | chr3_1:43166401-43166420 | Msa0358380:CDS | 35.0% | |
| ! | ATGGTAGGATTTAACTTAGG+AGG | + | chr3_1:43166638-43166657 | None:intergenic | 35.0% |
| ! | GACATGGTAGGATTTAACTT+AGG | + | chr3_1:43166641-43166660 | None:intergenic | 35.0% |
| AAATCCTACCATGTCATTGT+TGG | - | chr3_1:43166646-43166665 | Msa0358380:CDS | 35.0% | |
| TGGTAAGAAAATCTATCTCG+AGG | - | chr3_1:43166670-43166689 | Msa0358380:CDS | 35.0% | |
| GTAACAGTATCAAAAGCTGA+TGG | - | chr3_1:43166722-43166741 | Msa0358380:CDS | 35.0% | |
| !! | GGTTCTTTTGCTTTTAAGGA+AGG | - | chr3_1:43166743-43166762 | Msa0358380:CDS | 35.0% |
| !! | CTTTTGCTTTTAAGGAAGGA+TGG | - | chr3_1:43166747-43166766 | Msa0358380:CDS | 35.0% |
| GAAACAACTTCTACGCTATT+TGG | + | chr3_1:43166983-43167002 | None:intergenic | 35.0% | |
| ! | GTAGAAGTTGTTTCAGAAGA+TGG | - | chr3_1:43166989-43167008 | Msa0358380:intron | 35.0% |
| ! | TCCTATGTTTGAAGAAGTGT+TGG | - | chr3_1:43167111-43167130 | Msa0358380:intron | 35.0% |
| !! | CCTATGTTTGAAGAAGTGTT+GGG | - | chr3_1:43167112-43167131 | Msa0358380:intron | 35.0% |
| GTTTATACTTGTAGGGTTTC+AGG | - | chr3_1:43167296-43167315 | Msa0358380:intron | 35.0% | |
| CAGATCCTTATTGGACATAA+TGG | + | chr3_1:43167706-43167725 | None:intergenic | 35.0% | |
| TTCAGCAAACAGATCCTTAT+TGG | + | chr3_1:43167715-43167734 | None:intergenic | 35.0% | |
| ! | AATAAGGATCTGTTTGCTGA+AGG | - | chr3_1:43167714-43167733 | Msa0358380:CDS | 35.0% |
| ! | AGTTGAAGTGTTTGTTGAAG+CGG | + | chr3_1:43165916-43165935 | None:intergenic | 35.0% |
| AGAATGAAAAGGAAAACCCT+AGG | + | chr3_1:43165947-43165966 | None:intergenic | 35.0% | |
| CTCTGAATGGAAGAATGAAA+AGG | + | chr3_1:43165958-43165977 | None:intergenic | 35.0% | |
| AGTGATGAAAGAATCTACAG+TGG | + | chr3_1:43166051-43166070 | None:intergenic | 35.0% | |
| AATGGCTAAATATGCAAAGC+AGG | - | chr3_1:43166251-43166270 | Msa0358380:intron | 35.0% | |
| GACCTAAAGTTCCATTCAAA+TGG | - | chr3_1:43166273-43166292 | Msa0358380:intron | 35.0% | |
| GATGCAAAGTAAAATCATGG+TGG | - | chr3_1:43166352-43166371 | Msa0358380:intron | 35.0% | |
| GAACAGTTTGGTATCAAGTT+AGG | + | chr3_1:43166398-43166417 | None:intergenic | 35.0% | |
| TTGATACCAAACTGTTCACA+TGG | - | chr3_1:43166401-43166420 | Msa0358380:CDS | 35.0% | |
| ! | ATGGTAGGATTTAACTTAGG+AGG | + | chr3_1:43166638-43166657 | None:intergenic | 35.0% |
| ! | GACATGGTAGGATTTAACTT+AGG | + | chr3_1:43166641-43166660 | None:intergenic | 35.0% |
| AAATCCTACCATGTCATTGT+TGG | - | chr3_1:43166646-43166665 | Msa0358380:CDS | 35.0% | |
| TGGTAAGAAAATCTATCTCG+AGG | - | chr3_1:43166670-43166689 | Msa0358380:CDS | 35.0% | |
| GTAACAGTATCAAAAGCTGA+TGG | - | chr3_1:43166722-43166741 | Msa0358380:CDS | 35.0% | |
| !! | GGTTCTTTTGCTTTTAAGGA+AGG | - | chr3_1:43166743-43166762 | Msa0358380:CDS | 35.0% |
| !! | CTTTTGCTTTTAAGGAAGGA+TGG | - | chr3_1:43166747-43166766 | Msa0358380:CDS | 35.0% |
| GAAACAACTTCTACGCTATT+TGG | + | chr3_1:43166983-43167002 | None:intergenic | 35.0% | |
| ! | GTAGAAGTTGTTTCAGAAGA+TGG | - | chr3_1:43166989-43167008 | Msa0358380:intron | 35.0% |
| ! | TCCTATGTTTGAAGAAGTGT+TGG | - | chr3_1:43167111-43167130 | Msa0358380:intron | 35.0% |
| !! | CCTATGTTTGAAGAAGTGTT+GGG | - | chr3_1:43167112-43167131 | Msa0358380:intron | 35.0% |
| GTTTATACTTGTAGGGTTTC+AGG | - | chr3_1:43167296-43167315 | Msa0358380:intron | 35.0% | |
| CAGATCCTTATTGGACATAA+TGG | + | chr3_1:43167706-43167725 | None:intergenic | 35.0% | |
| TTCAGCAAACAGATCCTTAT+TGG | + | chr3_1:43167715-43167734 | None:intergenic | 35.0% | |
| ! | AATAAGGATCTGTTTGCTGA+AGG | - | chr3_1:43167714-43167733 | Msa0358380:CDS | 35.0% |
| ACTTCAACTTTCTCCAACCT+AGG | - | chr3_1:43165927-43165946 | Msa0358380:CDS | 40.0% | |
| CTTCAACTTTCTCCAACCTA+GGG | - | chr3_1:43165928-43165947 | Msa0358380:CDS | 40.0% | |
| TGAAAAGGAAAACCCTAGGT+TGG | + | chr3_1:43165943-43165962 | None:intergenic | 40.0% | |
| AGAGAAGAAGAACAGTGCAA+TGG | - | chr3_1:43165985-43166004 | Msa0358380:intron | 40.0% | |
| ATAAGCCTGCAGAAAGAGTT+GGG | + | chr3_1:43166097-43166116 | None:intergenic | 40.0% | |
| GCATAGTGCAACCATTTGAA+TGG | + | chr3_1:43166287-43166306 | None:intergenic | 40.0% | |
| ACCAAACTGTTCACATGGTT+TGG | - | chr3_1:43166406-43166425 | Msa0358380:CDS | 40.0% | |
| ACCAAACCATGTGAACAGTT+TGG | + | chr3_1:43166410-43166429 | None:intergenic | 40.0% | |
| CTTACCAACCAACAATGACA+TGG | + | chr3_1:43166657-43166676 | None:intergenic | 40.0% | |
| ! | AGGATGGGATGTTTTCTCAT+CGG | - | chr3_1:43166763-43166782 | Msa0358380:CDS | 40.0% |
| CCCAACACTTCTTCAAACAT+AGG | + | chr3_1:43167115-43167134 | None:intergenic | 40.0% | |
| ! | CAACGATTTAGAAGCGTATG+AGG | + | chr3_1:43167149-43167168 | None:intergenic | 40.0% |
| CTCATACGCTTCTAAATCGT+TGG | - | chr3_1:43167147-43167166 | Msa0358380:intron | 40.0% | |
| TTGTAGGGTTTCAGGCATTA+TGG | - | chr3_1:43167304-43167323 | Msa0358380:intron | 40.0% | |
| GTGTGATGATTTCCTACAGT+TGG | - | chr3_1:43167344-43167363 | Msa0358380:intron | 40.0% | |
| GATCAAGCAGCGAAATTCAA+AGG | - | chr3_1:43167407-43167426 | Msa0358380:intron | 40.0% | |
| GCATGTGAACTTGAAACTTC+TGG | - | chr3_1:43167446-43167465 | Msa0358380:intron | 40.0% | |
| ! | AACTTCTGGAAGAAGCAAAG+AGG | - | chr3_1:43167460-43167479 | Msa0358380:intron | 40.0% |
| ! | ACTTCTGGAAGAAGCAAAGA+GGG | - | chr3_1:43167461-43167480 | Msa0358380:intron | 40.0% |
| CAGGTCCTTATTGGACATAA+TGG | + | chr3_1:43167492-43167511 | None:intergenic | 40.0% | |
| TTCAGCAAACAGGTCCTTAT+TGG | + | chr3_1:43167501-43167520 | None:intergenic | 40.0% | |
| ! | AATAAGGACCTGTTTGCTGA+AGG | - | chr3_1:43167500-43167519 | Msa0358380:intron | 40.0% |
| GATCAAGCAGCGATATTCAA+AGG | - | chr3_1:43167621-43167640 | Msa0358380:CDS | 40.0% | |
| GCATGTGAACTTGAAACTTC+TGG | - | chr3_1:43167446-43167465 | Msa0358380:intron | 40.0% | |
| ! | AACTTCTGGAAGAAGCAAAG+AGG | - | chr3_1:43167460-43167479 | Msa0358380:intron | 40.0% |
| ! | ACTTCTGGAAGAAGCAAAGA+GGG | - | chr3_1:43167461-43167480 | Msa0358380:intron | 40.0% |
| ACTTCAACTTTCTCCAACCT+AGG | - | chr3_1:43165927-43165946 | Msa0358380:CDS | 40.0% | |
| CTTCAACTTTCTCCAACCTA+GGG | - | chr3_1:43165928-43165947 | Msa0358380:CDS | 40.0% | |
| TGAAAAGGAAAACCCTAGGT+TGG | + | chr3_1:43165943-43165962 | None:intergenic | 40.0% | |
| AGAGAAGAAGAACAGTGCAA+TGG | - | chr3_1:43165985-43166004 | Msa0358380:intron | 40.0% | |
| ATAAGCCTGCAGAAAGAGTT+GGG | + | chr3_1:43166097-43166116 | None:intergenic | 40.0% | |
| GCATAGTGCAACCATTTGAA+TGG | + | chr3_1:43166287-43166306 | None:intergenic | 40.0% | |
| ACCAAACTGTTCACATGGTT+TGG | - | chr3_1:43166406-43166425 | Msa0358380:CDS | 40.0% | |
| ACCAAACCATGTGAACAGTT+TGG | + | chr3_1:43166410-43166429 | None:intergenic | 40.0% | |
| CTTACCAACCAACAATGACA+TGG | + | chr3_1:43166657-43166676 | None:intergenic | 40.0% | |
| ! | AGGATGGGATGTTTTCTCAT+CGG | - | chr3_1:43166763-43166782 | Msa0358380:CDS | 40.0% |
| CCCAACACTTCTTCAAACAT+AGG | + | chr3_1:43167115-43167134 | None:intergenic | 40.0% | |
| ! | CAACGATTTAGAAGCGTATG+AGG | + | chr3_1:43167149-43167168 | None:intergenic | 40.0% |
| CTCATACGCTTCTAAATCGT+TGG | - | chr3_1:43167147-43167166 | Msa0358380:intron | 40.0% | |
| TTGTAGGGTTTCAGGCATTA+TGG | - | chr3_1:43167304-43167323 | Msa0358380:intron | 40.0% | |
| GTGTGATGATTTCCTACAGT+TGG | - | chr3_1:43167344-43167363 | Msa0358380:intron | 40.0% | |
| GATCAAGCAGCGAAATTCAA+AGG | - | chr3_1:43167407-43167426 | Msa0358380:intron | 40.0% | |
| GCATGTGAACTTGAAACTTC+TGG | - | chr3_1:43167446-43167465 | Msa0358380:intron | 40.0% | |
| ! | AACTTCTGGAAGAAGCAAAG+AGG | - | chr3_1:43167460-43167479 | Msa0358380:intron | 40.0% |
| ! | ACTTCTGGAAGAAGCAAAGA+GGG | - | chr3_1:43167461-43167480 | Msa0358380:intron | 40.0% |
| CAGGTCCTTATTGGACATAA+TGG | + | chr3_1:43167492-43167511 | None:intergenic | 40.0% | |
| TTCAGCAAACAGGTCCTTAT+TGG | + | chr3_1:43167501-43167520 | None:intergenic | 40.0% | |
| ! | AATAAGGACCTGTTTGCTGA+AGG | - | chr3_1:43167500-43167519 | Msa0358380:intron | 40.0% |
| GATCAAGCAGCGATATTCAA+AGG | - | chr3_1:43167621-43167640 | Msa0358380:CDS | 40.0% | |
| GCATGTGAACTTGAAACTTC+TGG | - | chr3_1:43167446-43167465 | Msa0358380:intron | 40.0% | |
| ! | AACTTCTGGAAGAAGCAAAG+AGG | - | chr3_1:43167460-43167479 | Msa0358380:intron | 40.0% |
| ! | ACTTCTGGAAGAAGCAAAGA+GGG | - | chr3_1:43167461-43167480 | Msa0358380:intron | 40.0% |
| ! | CTGGAGCTTTTCTCTAAACG+TGG | - | chr3_1:43165875-43165894 | Msa0358380:CDS | 45.0% |
| ! | GAAGTGTTTGTTGAAGCGGT+GGG | + | chr3_1:43165912-43165931 | None:intergenic | 45.0% |
| ! | TGAAGTGTTTGTTGAAGCGG+TGG | + | chr3_1:43165913-43165932 | None:intergenic | 45.0% |
| ! | TTCTCTCTCAGTGCTCTGAA+TGG | + | chr3_1:43165971-43165990 | None:intergenic | 45.0% |
| CATAAGCCTGCAGAAAGAGT+TGG | + | chr3_1:43166098-43166117 | None:intergenic | 45.0% | |
| CCAACCAACAATGACATGGT+AGG | + | chr3_1:43166653-43166672 | None:intergenic | 45.0% | |
| CCTACCATGTCATTGTTGGT+TGG | - | chr3_1:43166650-43166669 | Msa0358380:CDS | 45.0% | |
| AACCTCAACCGGTAAGAGAT+GGG | - | chr3_1:43166697-43166716 | Msa0358380:CDS | 45.0% | |
| TGTTACAGCCCATCTCTTAC+CGG | + | chr3_1:43166708-43166727 | None:intergenic | 45.0% | |
| TCGGCTCACAAGCTTGAAAA+AGG | - | chr3_1:43166782-43166801 | Msa0358380:CDS | 45.0% | |
| AAGAGAAGTAGATGCAGCAG+TGG | - | chr3_1:43166911-43166930 | Msa0358380:CDS | 45.0% | |
| ACTTGACGTGCCAATGCATA+TGG | - | chr3_1:43166937-43166956 | Msa0358380:CDS | 45.0% | |
| CTTGACGTGCCAATGCATAT+GGG | - | chr3_1:43166938-43166957 | Msa0358380:CDS | 45.0% | |
| TTGACGTGCCAATGCATATG+GGG | - | chr3_1:43166939-43166958 | Msa0358380:CDS | 45.0% | |
| ACATCAACCCCCATATGCAT+TGG | + | chr3_1:43166950-43166969 | None:intergenic | 45.0% | |
| !! | ATGCATATGGGGGTTGATGT+AGG | - | chr3_1:43166950-43166969 | Msa0358380:CDS | 45.0% |
| !! | TTTGAAGAAGTGTTGGGCTC+AGG | - | chr3_1:43167118-43167137 | Msa0358380:intron | 45.0% |
| !! | TTGAAGAAGTGTTGGGCTCA+GGG | - | chr3_1:43167119-43167138 | Msa0358380:intron | 45.0% |
| TACCAAAACTCTCGGTGACT+TGG | + | chr3_1:43167207-43167226 | None:intergenic | 45.0% | |
| TACCTAAGCCTTCAGCAAAC+AGG | + | chr3_1:43167511-43167530 | None:intergenic | 45.0% | |
| ! | CTGGAGCTTTTCTCTAAACG+TGG | - | chr3_1:43165875-43165894 | Msa0358380:CDS | 45.0% |
| ! | GAAGTGTTTGTTGAAGCGGT+GGG | + | chr3_1:43165912-43165931 | None:intergenic | 45.0% |
| ! | TGAAGTGTTTGTTGAAGCGG+TGG | + | chr3_1:43165913-43165932 | None:intergenic | 45.0% |
| ! | TTCTCTCTCAGTGCTCTGAA+TGG | + | chr3_1:43165971-43165990 | None:intergenic | 45.0% |
| CATAAGCCTGCAGAAAGAGT+TGG | + | chr3_1:43166098-43166117 | None:intergenic | 45.0% | |
| CCAACCAACAATGACATGGT+AGG | + | chr3_1:43166653-43166672 | None:intergenic | 45.0% | |
| CCTACCATGTCATTGTTGGT+TGG | - | chr3_1:43166650-43166669 | Msa0358380:CDS | 45.0% | |
| AACCTCAACCGGTAAGAGAT+GGG | - | chr3_1:43166697-43166716 | Msa0358380:CDS | 45.0% | |
| TGTTACAGCCCATCTCTTAC+CGG | + | chr3_1:43166708-43166727 | None:intergenic | 45.0% | |
| TCGGCTCACAAGCTTGAAAA+AGG | - | chr3_1:43166782-43166801 | Msa0358380:CDS | 45.0% | |
| AAGAGAAGTAGATGCAGCAG+TGG | - | chr3_1:43166911-43166930 | Msa0358380:CDS | 45.0% | |
| ACTTGACGTGCCAATGCATA+TGG | - | chr3_1:43166937-43166956 | Msa0358380:CDS | 45.0% | |
| CTTGACGTGCCAATGCATAT+GGG | - | chr3_1:43166938-43166957 | Msa0358380:CDS | 45.0% | |
| TTGACGTGCCAATGCATATG+GGG | - | chr3_1:43166939-43166958 | Msa0358380:CDS | 45.0% | |
| ACATCAACCCCCATATGCAT+TGG | + | chr3_1:43166950-43166969 | None:intergenic | 45.0% | |
| !! | ATGCATATGGGGGTTGATGT+AGG | - | chr3_1:43166950-43166969 | Msa0358380:CDS | 45.0% |
| !! | TTTGAAGAAGTGTTGGGCTC+AGG | - | chr3_1:43167118-43167137 | Msa0358380:intron | 45.0% |
| !! | TTGAAGAAGTGTTGGGCTCA+GGG | - | chr3_1:43167119-43167138 | Msa0358380:intron | 45.0% |
| TACCAAAACTCTCGGTGACT+TGG | + | chr3_1:43167207-43167226 | None:intergenic | 45.0% | |
| TACCTAAGCCTTCAGCAAAC+AGG | + | chr3_1:43167511-43167530 | None:intergenic | 45.0% | |
| CTCGAGGATTCAACCTCAAC+CGG | - | chr3_1:43166686-43166705 | Msa0358380:CDS | 50.0% | |
| CAACCTCAACCGGTAAGAGA+TGG | - | chr3_1:43166696-43166715 | Msa0358380:CDS | 50.0% | |
| TGACGTGCCAATGCATATGG+GGG | - | chr3_1:43166940-43166959 | Msa0358380:CDS | 50.0% | |
| !! | CATATGGGGGTTGATGTAGG+TGG | - | chr3_1:43166953-43166972 | Msa0358380:CDS | 50.0% |
| !! | TGAAGAAGTGTTGGGCTCAG+GGG | - | chr3_1:43167120-43167139 | Msa0358380:intron | 50.0% |
| ! | AGCCAAGTCACCGAGAGTTT+TGG | - | chr3_1:43167202-43167221 | Msa0358380:intron | 50.0% |
| ! | GACCTGTTTGCTGAAGGCTT+AGG | - | chr3_1:43167506-43167525 | Msa0358380:intron | 50.0% |
| CTCGAGGATTCAACCTCAAC+CGG | - | chr3_1:43166686-43166705 | Msa0358380:CDS | 50.0% | |
| CAACCTCAACCGGTAAGAGA+TGG | - | chr3_1:43166696-43166715 | Msa0358380:CDS | 50.0% | |
| TGACGTGCCAATGCATATGG+GGG | - | chr3_1:43166940-43166959 | Msa0358380:CDS | 50.0% | |
| !! | CATATGGGGGTTGATGTAGG+TGG | - | chr3_1:43166953-43166972 | Msa0358380:CDS | 50.0% |
| !! | TGAAGAAGTGTTGGGCTCAG+GGG | - | chr3_1:43167120-43167139 | Msa0358380:intron | 50.0% |
| ! | AGCCAAGTCACCGAGAGTTT+TGG | - | chr3_1:43167202-43167221 | Msa0358380:intron | 50.0% |
| ! | GACCTGTTTGCTGAAGGCTT+AGG | - | chr3_1:43167506-43167525 | Msa0358380:intron | 50.0% |
| ! | GTGTTTGTTGAAGCGGTGGG+AGG | + | chr3_1:43165909-43165928 | None:intergenic | 55.0% |
| !! | GAGTTGGGCGAGGTTGATGT+TGG | + | chr3_1:43166082-43166101 | None:intergenic | 55.0% |
| ! | AGCCCATCTCTTACCGGTTG+AGG | + | chr3_1:43166702-43166721 | None:intergenic | 55.0% |
| ! | GTGTTTGTTGAAGCGGTGGG+AGG | + | chr3_1:43165909-43165928 | None:intergenic | 55.0% |
| !! | GAGTTGGGCGAGGTTGATGT+TGG | + | chr3_1:43166082-43166101 | None:intergenic | 55.0% |
| ! | AGCCCATCTCTTACCGGTTG+AGG | + | chr3_1:43166702-43166721 | None:intergenic | 55.0% |
| TTGTTGAAGCGGTGGGAGGC+AGG | + | chr3_1:43165905-43165924 | None:intergenic | 60.0% | |
| CCTGCAGAAAGAGTTGGGCG+AGG | + | chr3_1:43166092-43166111 | None:intergenic | 60.0% | |
| CCTCGCCCAACTCTTTCTGC+AGG | - | chr3_1:43166089-43166108 | Msa0358380:CDS | 60.0% | |
| TTGTTGAAGCGGTGGGAGGC+AGG | + | chr3_1:43165905-43165924 | None:intergenic | 60.0% | |
| CCTGCAGAAAGAGTTGGGCG+AGG | + | chr3_1:43166092-43166111 | None:intergenic | 60.0% | |
| CCTCGCCCAACTCTTTCTGC+AGG | - | chr3_1:43166089-43166108 | Msa0358380:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 43165875 | 43167740 | 43165875 | ID=Msa0358380;Name=Msa0358380 |
| chr3_1 | mRNA | 43165875 | 43167740 | 43165875 | ID=Msa0358380-mRNA-1;Parent=Msa0358380;Name=Msa0358380-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0.66|0.25|1|1|0.5|4|0|333 |
| chr3_1 | exon | 43167588 | 43167740 | 43167588 | ID=Msa0358380-mRNA-1:exon:7623;Parent=Msa0358380-mRNA-1 |
| chr3_1 | exon | 43166392 | 43166986 | 43166392 | ID=Msa0358380-mRNA-1:exon:7622;Parent=Msa0358380-mRNA-1 |
| chr3_1 | exon | 43166088 | 43166213 | 43166088 | ID=Msa0358380-mRNA-1:exon:7621;Parent=Msa0358380-mRNA-1 |
| chr3_1 | exon | 43165875 | 43165999 | 43165875 | ID=Msa0358380-mRNA-1:exon:7620;Parent=Msa0358380-mRNA-1 |
| chr3_1 | CDS | 43167588 | 43167740 | 43167588 | ID=Msa0358380-mRNA-1:cds;Parent=Msa0358380-mRNA-1 |
| chr3_1 | CDS | 43166392 | 43166986 | 43166392 | ID=Msa0358380-mRNA-1:cds;Parent=Msa0358380-mRNA-1 |
| chr3_1 | CDS | 43166088 | 43166213 | 43166088 | ID=Msa0358380-mRNA-1:cds;Parent=Msa0358380-mRNA-1 |
| chr3_1 | CDS | 43165875 | 43165999 | 43165875 | ID=Msa0358380-mRNA-1:cds;Parent=Msa0358380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
