Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358790 | QJU69413.1 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 8.27e-42 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358790 | sp|A0A0P0X0C0|MPH1_ORYSJ | 61.905 | 63 | 24 | 0 | 7 | 69 | 5 | 67 | 3.71e-23 | 94.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358790 | A0A6M5K8M6 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 3.95e-42 | 148 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0358790 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358790 | MtrunA17_Chr3g0095611 | 98.551 | 69 | 1 | 0 | 1 | 69 | 1 | 69 | 2.14e-45 | 147 |
| Msa0358790 | MtrunA17_Chr2g0288601 | 61.905 | 63 | 24 | 0 | 7 | 69 | 59 | 121 | 1.40e-23 | 89.0 |
| Msa0358790 | MtrunA17_Chr8g0379121 | 57.576 | 66 | 28 | 0 | 4 | 69 | 96 | 161 | 1.67e-22 | 91.7 |
| Msa0358790 | MtrunA17_Chr1g0162931 | 66.102 | 59 | 20 | 0 | 11 | 69 | 10 | 68 | 4.37e-22 | 89.0 |
| Msa0358790 | MtrunA17_Chr2g0283951 | 59.091 | 66 | 27 | 0 | 4 | 69 | 74 | 139 | 8.30e-22 | 89.4 |
| Msa0358790 | MtrunA17_Chr2g0320231 | 62.295 | 61 | 23 | 0 | 9 | 69 | 87 | 147 | 9.40e-22 | 89.4 |
| Msa0358790 | MtrunA17_Chr1g0210911 | 61.667 | 60 | 23 | 0 | 10 | 69 | 13 | 72 | 2.63e-21 | 87.8 |
| Msa0358790 | MtrunA17_Chr7g0243081 | 53.623 | 69 | 32 | 0 | 1 | 69 | 53 | 121 | 3.85e-21 | 87.4 |
| Msa0358790 | MtrunA17_Chr1g0190301 | 56.061 | 66 | 28 | 1 | 4 | 69 | 161 | 225 | 4.88e-19 | 82.0 |
| Msa0358790 | MtrunA17_Chr7g0274471 | 55.172 | 58 | 26 | 0 | 19 | 76 | 218 | 275 | 7.03e-18 | 79.0 |
| Msa0358790 | MtrunA17_Chr7g0261911 | 53.448 | 58 | 27 | 0 | 19 | 76 | 262 | 319 | 2.86e-17 | 77.4 |
| Msa0358790 | MtrunA17_Chr5g0417521 | 56.863 | 51 | 22 | 0 | 19 | 69 | 15 | 65 | 4.65e-17 | 76.3 |
| Msa0358790 | MtrunA17_Chr5g0409731 | 41.935 | 93 | 42 | 2 | 8 | 93 | 7 | 94 | 2.28e-16 | 73.9 |
| Msa0358790 | MtrunA17_Chr6g0461641 | 54.902 | 51 | 23 | 0 | 19 | 69 | 42 | 92 | 4.43e-16 | 73.6 |
| Msa0358790 | MtrunA17_Chr8g0356501 | 62.745 | 51 | 19 | 0 | 19 | 69 | 37 | 87 | 6.07e-16 | 73.2 |
| Msa0358790 | MtrunA17_Chr2g0310011 | 62.745 | 51 | 19 | 0 | 19 | 69 | 35 | 85 | 1.47e-15 | 72.0 |
| Msa0358790 | MtrunA17_Chr2g0321461 | 48.485 | 66 | 33 | 1 | 4 | 69 | 31 | 95 | 1.57e-15 | 72.0 |
| Msa0358790 | MtrunA17_Chr6g0479431 | 39.759 | 83 | 46 | 1 | 18 | 100 | 201 | 279 | 3.52e-15 | 70.9 |
| Msa0358790 | MtrunA17_Chr2g0291021 | 44.156 | 77 | 41 | 1 | 21 | 95 | 51 | 127 | 5.87e-15 | 70.1 |
| Msa0358790 | MtrunA17_Chr1g0197171 | 60.784 | 51 | 20 | 0 | 19 | 69 | 44 | 94 | 1.02e-14 | 69.3 |
| Msa0358790 | MtrunA17_Chr7g0258551 | 56.604 | 53 | 23 | 0 | 17 | 69 | 210 | 262 | 1.07e-14 | 69.7 |
| Msa0358790 | MtrunA17_Chr1g0175081 | 48.333 | 60 | 31 | 0 | 17 | 76 | 20 | 79 | 1.25e-14 | 65.5 |
| Msa0358790 | MtrunA17_Chr8g0366281 | 55.769 | 52 | 23 | 0 | 18 | 69 | 172 | 223 | 1.53e-14 | 69.3 |
| Msa0358790 | MtrunA17_Chr1g0154261 | 44.928 | 69 | 36 | 1 | 1 | 69 | 110 | 176 | 1.99e-14 | 68.6 |
| Msa0358790 | MtrunA17_Chr2g0290991 | 58.824 | 51 | 21 | 0 | 19 | 69 | 39 | 89 | 3.72e-14 | 67.8 |
| Msa0358790 | MtrunA17_Chr7g0254981 | 46.970 | 66 | 35 | 0 | 4 | 69 | 35 | 100 | 3.94e-14 | 67.4 |
| Msa0358790 | MtrunA17_Chr5g0410741 | 53.846 | 52 | 24 | 0 | 18 | 69 | 218 | 269 | 4.22e-14 | 68.2 |
| Msa0358790 | MtrunA17_Chr3g0109981 | 53.846 | 52 | 24 | 0 | 18 | 69 | 273 | 324 | 4.25e-14 | 68.2 |
| Msa0358790 | MtrunA17_Chr1g0175091 | 47.692 | 65 | 34 | 0 | 5 | 69 | 244 | 308 | 8.60e-14 | 67.4 |
| Msa0358790 | MtrunA17_Chr1g0175071 | 45.570 | 79 | 41 | 1 | 21 | 97 | 179 | 257 | 2.02e-13 | 65.9 |
| Msa0358790 | MtrunA17_Chr4g0042451 | 50.980 | 51 | 25 | 0 | 19 | 69 | 17 | 67 | 2.14e-13 | 65.9 |
| Msa0358790 | MtrunA17_Chr4g0009991 | 54.717 | 53 | 23 | 1 | 17 | 69 | 65 | 116 | 5.12e-13 | 61.6 |
| Msa0358790 | MtrunA17_Chr7g0242521 | 50.000 | 68 | 28 | 2 | 5 | 69 | 2 | 66 | 8.41e-13 | 63.5 |
| Msa0358790 | MtrunA17_Chr7g0258531 | 53.704 | 54 | 25 | 0 | 21 | 74 | 215 | 268 | 1.32e-12 | 63.5 |
| Msa0358790 | MtrunA17_Chr4g0009901 | 50.847 | 59 | 28 | 1 | 11 | 69 | 160 | 217 | 3.55e-12 | 62.0 |
| Msa0358790 | MtrunA17_Chr2g0294911 | 36.134 | 119 | 62 | 3 | 17 | 128 | 209 | 320 | 9.34e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358790 | AT2G02060.2 | 60.000 | 70 | 28 | 0 | 4 | 73 | 14 | 83 | 7.34e-23 | 90.9 |
| Msa0358790 | AT2G02060.1 | 60.000 | 70 | 28 | 0 | 4 | 73 | 14 | 83 | 7.34e-23 | 90.9 |
| Msa0358790 | AT2G40260.1 | 61.765 | 68 | 25 | 1 | 3 | 69 | 65 | 132 | 2.63e-22 | 91.7 |
| Msa0358790 | AT1G14600.1 | 56.164 | 73 | 32 | 0 | 2 | 74 | 6 | 78 | 8.22e-22 | 88.2 |
| Msa0358790 | AT2G42660.1 | 61.017 | 59 | 23 | 0 | 11 | 69 | 42 | 100 | 3.54e-21 | 86.3 |
| Msa0358790 | AT4G04605.1 | 58.730 | 63 | 26 | 0 | 11 | 73 | 6 | 68 | 7.86e-21 | 84.7 |
| Msa0358790 | AT2G38300.1 | 57.812 | 64 | 27 | 0 | 6 | 69 | 41 | 104 | 2.50e-20 | 85.5 |
| Msa0358790 | AT4G04555.1 | 57.627 | 59 | 25 | 0 | 11 | 69 | 6 | 64 | 1.99e-17 | 73.2 |
| Msa0358790 | AT4G04580.1 | 52.542 | 59 | 28 | 0 | 11 | 69 | 6 | 64 | 3.46e-17 | 73.9 |
| Msa0358790 | AT4G28610.1 | 61.224 | 49 | 19 | 0 | 21 | 69 | 227 | 275 | 1.71e-16 | 75.1 |
| Msa0358790 | AT4G13640.1 | 56.667 | 60 | 26 | 0 | 19 | 78 | 37 | 96 | 1.73e-16 | 74.3 |
| Msa0358790 | AT4G13640.2 | 56.667 | 60 | 26 | 0 | 19 | 78 | 37 | 96 | 1.78e-16 | 74.3 |
| Msa0358790 | AT3G04030.3 | 35.593 | 118 | 68 | 3 | 1 | 115 | 28 | 140 | 2.10e-16 | 75.1 |
| Msa0358790 | AT3G04030.1 | 35.593 | 118 | 68 | 3 | 1 | 115 | 28 | 140 | 2.14e-16 | 75.1 |
| Msa0358790 | AT5G45580.1 | 55.556 | 54 | 24 | 0 | 16 | 69 | 4 | 57 | 3.53e-16 | 73.2 |
| Msa0358790 | AT2G01060.1 | 53.623 | 69 | 28 | 2 | 1 | 69 | 1 | 65 | 3.54e-16 | 73.6 |
| Msa0358790 | AT5G45580.2 | 55.556 | 54 | 24 | 0 | 16 | 69 | 20 | 73 | 3.81e-16 | 73.2 |
| Msa0358790 | AT3G24120.1 | 62.745 | 51 | 19 | 0 | 19 | 69 | 41 | 91 | 3.83e-16 | 73.6 |
| Msa0358790 | AT3G24120.2 | 62.745 | 51 | 19 | 0 | 19 | 69 | 41 | 91 | 4.09e-16 | 73.6 |
| Msa0358790 | AT5G18240.2 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 8.68e-16 | 73.2 |
| Msa0358790 | AT5G18240.3 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 8.68e-16 | 73.2 |
| Msa0358790 | AT5G18240.5 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 9.31e-16 | 73.2 |
| Msa0358790 | AT5G18240.1 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 9.45e-16 | 73.2 |
| Msa0358790 | AT5G18240.4 | 47.826 | 69 | 35 | 1 | 1 | 69 | 28 | 95 | 9.45e-16 | 73.2 |
| Msa0358790 | AT1G79430.2 | 62.745 | 51 | 19 | 0 | 19 | 69 | 34 | 84 | 1.10e-15 | 72.8 |
| Msa0358790 | AT3G12730.1 | 60.784 | 51 | 20 | 0 | 19 | 69 | 23 | 73 | 1.59e-15 | 70.9 |
| Msa0358790 | AT2G20400.2 | 53.571 | 56 | 26 | 0 | 21 | 76 | 233 | 288 | 7.38e-15 | 70.5 |
| Msa0358790 | AT2G20400.1 | 53.571 | 56 | 26 | 0 | 21 | 76 | 233 | 288 | 7.73e-15 | 70.5 |
| Msa0358790 | AT5G42630.2 | 46.154 | 65 | 33 | 1 | 18 | 82 | 104 | 166 | 9.07e-15 | 68.9 |
| Msa0358790 | AT5G29000.4 | 46.479 | 71 | 37 | 1 | 6 | 76 | 219 | 288 | 1.85e-14 | 68.9 |
| Msa0358790 | AT5G42630.1 | 46.154 | 65 | 33 | 1 | 18 | 82 | 104 | 166 | 2.02e-14 | 68.6 |
| Msa0358790 | AT5G29000.1 | 46.479 | 71 | 37 | 1 | 6 | 76 | 176 | 245 | 2.50e-14 | 68.9 |
| Msa0358790 | AT5G29000.3 | 46.479 | 71 | 37 | 1 | 6 | 76 | 176 | 245 | 2.50e-14 | 68.9 |
| Msa0358790 | AT5G29000.2 | 46.479 | 71 | 37 | 1 | 6 | 76 | 219 | 288 | 2.52e-14 | 68.9 |
| Msa0358790 | AT1G32240.2 | 53.846 | 52 | 24 | 0 | 18 | 69 | 212 | 263 | 2.83e-14 | 68.9 |
| Msa0358790 | AT3G04450.3 | 48.333 | 60 | 30 | 1 | 17 | 76 | 237 | 295 | 2.95e-14 | 68.6 |
| Msa0358790 | AT1G32240.1 | 53.846 | 52 | 24 | 0 | 18 | 69 | 212 | 263 | 3.41e-14 | 68.6 |
| Msa0358790 | AT5G16560.1 | 53.846 | 52 | 24 | 0 | 18 | 69 | 218 | 269 | 4.11e-14 | 68.6 |
| Msa0358790 | AT2G06020.1 | 44.286 | 70 | 31 | 1 | 14 | 75 | 81 | 150 | 4.39e-14 | 67.8 |
| Msa0358790 | AT3G04450.4 | 48.333 | 60 | 30 | 1 | 17 | 76 | 197 | 255 | 4.43e-14 | 68.6 |
| Msa0358790 | AT3G04450.2 | 48.333 | 60 | 30 | 1 | 17 | 76 | 197 | 255 | 4.43e-14 | 68.6 |
| Msa0358790 | AT3G04450.1 | 48.333 | 60 | 30 | 1 | 17 | 76 | 237 | 295 | 4.49e-14 | 68.6 |
| Msa0358790 | AT4G17695.1 | 50.000 | 52 | 26 | 0 | 18 | 69 | 163 | 214 | 7.51e-14 | 67.4 |
| Msa0358790 | AT5G06800.3 | 53.571 | 56 | 26 | 0 | 21 | 76 | 194 | 249 | 7.90e-14 | 67.0 |
| Msa0358790 | AT5G06800.2 | 53.571 | 56 | 26 | 0 | 21 | 76 | 194 | 249 | 1.52e-13 | 67.0 |
| Msa0358790 | AT5G06800.1 | 53.571 | 56 | 26 | 0 | 21 | 76 | 194 | 249 | 1.56e-13 | 66.6 |
| Msa0358790 | AT3G04030.2 | 33.898 | 118 | 69 | 4 | 1 | 115 | 28 | 139 | 1.90e-13 | 66.6 |
| Msa0358790 | AT3G13040.3 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.95e-13 | 66.6 |
| Msa0358790 | AT3G13040.1 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.95e-13 | 66.6 |
| Msa0358790 | AT3G13040.2 | 57.143 | 49 | 21 | 0 | 21 | 69 | 243 | 291 | 1.95e-13 | 66.6 |
| Msa0358790 | AT1G69580.1 | 49.020 | 51 | 26 | 0 | 19 | 69 | 34 | 84 | 2.57e-13 | 65.9 |
| Msa0358790 | AT1G69580.2 | 49.020 | 51 | 26 | 0 | 19 | 69 | 34 | 84 | 2.77e-13 | 65.9 |
| Msa0358790 | AT3G62670.1 | 44.444 | 81 | 38 | 3 | 6 | 79 | 196 | 276 | 8.99e-11 | 58.9 |
Find 44 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGATTATTTGTCGTATT+TGG | 0.138762 | 3_1:+44408326 | None:intergenic |
| GATAATGTTATGTTATATTA+AGG | 0.171825 | 3_1:-44408174 | Msa0358790:three_prime_UTR |
| GGATGGGAGATTTAGATATT+TGG | 0.197274 | 3_1:+44408412 | None:intergenic |
| TTACCTTTGGGGTGAACAAC+TGG | 0.338441 | 3_1:+44410323 | None:intergenic |
| ATCATATTCAAAATGTGTTT+AGG | 0.358434 | 3_1:+44412742 | None:intergenic |
| ATAATGTTATGTTATATTAA+GGG | 0.399609 | 3_1:-44408173 | Msa0358790:three_prime_UTR |
| ACAAAGTATTGATGAAGTTC+CGG | 0.415452 | 3_1:+44413082 | None:intergenic |
| GTTCAAACTGTTGAAAGTCT+TGG | 0.422209 | 3_1:-44413061 | Msa0358790:CDS |
| TTATATATATTCAAATTGAT+AGG | 0.433288 | 3_1:+44408252 | None:intergenic |
| TCTAATAAGAGTATAATGAT+AGG | 0.437208 | 3_1:+44408195 | None:intergenic |
| CTCAGATTTAGATTCAACTT+TGG | 0.447037 | 3_1:+44413183 | None:intergenic |
| GAATTAATAGAGAACTGAAA+GGG | 0.489679 | 3_1:+44408390 | None:intergenic |
| AACTATTCTTGCACCAACAC+TGG | 0.497047 | 3_1:-44410385 | Msa0358790:CDS |
| AGTTTATATAATCTCTCCCA+TGG | 0.511824 | 3_1:+44408279 | None:intergenic |
| AACAATAATTCTAAGAGAAG+TGG | 0.514149 | 3_1:-44413151 | Msa0358790:CDS |
| CCAGTGGTGCATAGTGATCA+AGG | 0.520200 | 3_1:-44408368 | Msa0358790:three_prime_UTR |
| CCTTGATCACTATGCACCAC+TGG | 0.528723 | 3_1:+44408368 | None:intergenic |
| TTGAATATGATGCAAGTGAA+GGG | 0.529830 | 3_1:-44412730 | Msa0358790:CDS |
| CAAAACAGCCACGCCTTCGA+TGG | 0.531209 | 3_1:-44413108 | Msa0358790:CDS |
| AATAGAGAACTGAAAGGGGA+TGG | 0.533189 | 3_1:+44408395 | None:intergenic |
| TTTGAATATGATGCAAGTGA+AGG | 0.533245 | 3_1:-44412731 | Msa0358790:CDS |
| GGTGAACAACTGGAGCAGAT+TGG | 0.536299 | 3_1:+44410333 | None:intergenic |
| CAGTTCTCTATTAATTCCAG+TGG | 0.540686 | 3_1:-44408384 | Msa0358790:three_prime_UTR |
| TCCGGTGTCCATCGAAGGCG+TGG | 0.541150 | 3_1:+44413100 | None:intergenic |
| TGGGAGAGATTATATAAACT+TGG | 0.542403 | 3_1:-44408276 | Msa0358790:three_prime_UTR |
| ATAGAGAACTGAAAGGGGAT+GGG | 0.542477 | 3_1:+44408396 | None:intergenic |
| CCATATTAAAAGTCATCTCC+AGG | 0.551481 | 3_1:-44412695 | Msa0358790:intron |
| AGAAAGCATGCACTTGACTC+AGG | 0.560531 | 3_1:+44408473 | None:intergenic |
| TCTAGTTCTATAAAATCCCA+TGG | 0.570838 | 3_1:-44408296 | Msa0358790:three_prime_UTR |
| GGAATTAATAGAGAACTGAA+AGG | 0.580222 | 3_1:+44408389 | None:intergenic |
| TTTGATAAAATTTACCTTTG+GGG | 0.582723 | 3_1:+44410312 | None:intergenic |
| GAAGTTCCGGTGTCCATCGA+AGG | 0.585063 | 3_1:+44413095 | None:intergenic |
| CAAACTGTTGAAAGTCTTGG+TGG | 0.585108 | 3_1:-44413058 | Msa0358790:CDS |
| GCTCCAGTTGTTCACCCCAA+AGG | 0.588268 | 3_1:-44410326 | Msa0358790:intron |
| ACAATACAAGACAAACAGAA+AGG | 0.591808 | 3_1:+44408123 | None:intergenic |
| GTTTATATAATCTCTCCCAT+GGG | 0.598304 | 3_1:+44408280 | None:intergenic |
| ACCAACACTGGAAGAAAACA+AGG | 0.606646 | 3_1:-44410373 | Msa0358790:CDS |
| GCCACGCCTTCGATGGACAC+CGG | 0.606915 | 3_1:-44413101 | Msa0358790:CDS |
| TTAGATGTACAGGAACGTGA+AGG | 0.615592 | 3_1:-44410412 | Msa0358790:intron |
| TAGATGTACAGGAACGTGAA+GGG | 0.615844 | 3_1:-44410411 | Msa0358790:intron |
| TAGGTATTAATACATGTGAA+AGG | 0.618651 | 3_1:+44408214 | None:intergenic |
| TGAATATGATGCAAGTGAAG+GGG | 0.650743 | 3_1:-44412729 | Msa0358790:CDS |
| CTAGTTCTATAAAATCCCAT+GGG | 0.658747 | 3_1:-44408295 | Msa0358790:three_prime_UTR |
| AATTAATAGAGAACTGAAAG+GGG | 0.663213 | 3_1:+44408391 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAATACTATATCAAA+TGG | + | chr3_1:44409516-44409535 | None:intergenic | 10.0% |
| !! | TTATTATATGATATCAATAT+AGG | + | chr3_1:44409760-44409779 | None:intergenic | 10.0% |
| !!! | ACCAATTTTTATTTATATTT+TGG | - | chr3_1:44410351-44410370 | Msa0358790:CDS | 10.0% |
| !!! | CCAATTTTTATTTATATTTT+GGG | - | chr3_1:44410352-44410371 | Msa0358790:CDS | 10.0% |
| !!! | ATTATATACATTTTTTTTAG+AGG | + | chr3_1:44410773-44410792 | None:intergenic | 10.0% |
| !!! | TTTTTATTCAAAAAATCAAA+TGG | - | chr3_1:44411048-44411067 | Msa0358790:intron | 10.0% |
| !! | AATATTCTATTAAATTAGTA+AGG | - | chr3_1:44411885-44411904 | Msa0358790:intron | 10.0% |
| !! | ATATTCTATTAAATTAGTAA+GGG | - | chr3_1:44411886-44411905 | Msa0358790:intron | 10.0% |
| !!! | TAATTGTCTTTTTTTTTTTT+TGG | + | chr3_1:44412020-44412039 | None:intergenic | 10.0% |
| !!! | AGTTTTTTTTTTTTTTTTTG+AGG | - | chr3_1:44412157-44412176 | Msa0358790:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTGA+GGG | - | chr3_1:44412158-44412177 | Msa0358790:intron | 10.0% |
| !!! | TTATTTTTATTTCATTTTAG+AGG | - | chr3_1:44412260-44412279 | Msa0358790:intron | 10.0% |
| !!! | TATTTTTATTTCATTTTAGA+GGG | - | chr3_1:44412261-44412280 | Msa0358790:intron | 10.0% |
| !! | TTATATATATTCAAATTGAT+AGG | + | chr3_1:44413081-44413100 | None:intergenic | 10.0% |
| !! | ATAATGTTATGTTATATTAA+GGG | - | chr3_1:44413157-44413176 | Msa0358790:CDS | 10.0% |
| !!! | TTATTTTCTTCTTTTAATCA+TGG | - | chr3_1:44408448-44408467 | Msa0358790:CDS | 15.0% |
| !! | ATTATGTATAAGTATTAAGA+CGG | - | chr3_1:44408500-44408519 | Msa0358790:intron | 15.0% |
| !! | TTGTATATATTCTAATAATG+AGG | + | chr3_1:44408718-44408737 | None:intergenic | 15.0% |
| !!! | TTTTCATAATATGTGAATAT+TGG | - | chr3_1:44408871-44408890 | Msa0358790:intron | 15.0% |
| !!! | AAATGCATTTTAAAATAATC+TGG | + | chr3_1:44409927-44409946 | None:intergenic | 15.0% |
| !! | CCCAAAATATAAATAAAAAT+TGG | + | chr3_1:44410355-44410374 | None:intergenic | 15.0% |
| !!! | TTTTTATTTATATTTTGGGA+CGG | - | chr3_1:44410356-44410375 | Msa0358790:CDS | 15.0% |
| !!! | TTTTCATTCACTTTTTTATT+AGG | - | chr3_1:44410496-44410515 | Msa0358790:intron | 15.0% |
| !!! | TCTAATATTCACTTTTTTAT+TGG | + | chr3_1:44410597-44410616 | None:intergenic | 15.0% |
| !! | ATTTGATAAAATTTACCTTT+GGG | + | chr3_1:44411022-44411041 | None:intergenic | 15.0% |
| !! | AAAAAAAATAGTGATATGAT+AGG | - | chr3_1:44411537-44411556 | Msa0358790:intron | 15.0% |
| !!! | GTACAAAATTGAATTTTATT+AGG | - | chr3_1:44411836-44411855 | Msa0358790:intron | 15.0% |
| !!! | ATCTAAAATTATTTTAAAGG+TGG | + | chr3_1:44411913-44411932 | None:intergenic | 15.0% |
| !!! | GAGATCTAAAATTATTTTAA+AGG | + | chr3_1:44411916-44411935 | None:intergenic | 15.0% |
| !! | GATAATGTTATGTTATATTA+AGG | - | chr3_1:44413156-44413175 | Msa0358790:CDS | 15.0% |
| !!! | ATGATCATCATGTTTTATAT+AGG | - | chr3_1:44408317-44408336 | Msa0358790:three_prime_UTR | 20.0% |
| !!! | TGATCATCATGTTTTATATA+GGG | - | chr3_1:44408318-44408337 | Msa0358790:three_prime_UTR | 20.0% |
| !! | ATGATTAACAAAGCATATTA+TGG | + | chr3_1:44408399-44408418 | None:intergenic | 20.0% |
| !!! | TTAATCATGGTTTTAAATTG+CGG | - | chr3_1:44408461-44408480 | Msa0358790:CDS | 20.0% |
| !! | ATCATATTCAAAATGTGTTT+AGG | + | chr3_1:44408591-44408610 | None:intergenic | 20.0% |
| !! | AATGAGGATTAAATTAATTG+AGG | + | chr3_1:44408702-44408721 | None:intergenic | 20.0% |
| !! | TTAAAAGTAAAAATTAGACC+TGG | - | chr3_1:44408792-44408811 | Msa0358790:intron | 20.0% |
| !!! | AACATATTTTTGATAGACTA+TGG | - | chr3_1:44408833-44408852 | Msa0358790:CDS | 20.0% |
| !!! | TTCTTTTCATAATGAAATCA+TGG | - | chr3_1:44408941-44408960 | Msa0358790:intron | 20.0% |
| !!! | TCTTTTCATAATGAAATCAT+GGG | - | chr3_1:44408942-44408961 | Msa0358790:intron | 20.0% |
| !!! | ATTTTGTCATCAAAAGTAAA+AGG | + | chr3_1:44409099-44409118 | None:intergenic | 20.0% |
| !! | CAATACCTTAATTACATTAA+GGG | + | chr3_1:44409295-44409314 | None:intergenic | 20.0% |
| !! | TGATATGAAAATCTGTATAT+CGG | + | chr3_1:44409324-44409343 | None:intergenic | 20.0% |
| !!! | TTGTATTATTTTTGTCTTGT+GGG | - | chr3_1:44409594-44409613 | Msa0358790:intron | 20.0% |
| !! | TCTTGAAAAAATATGTTCAT+CGG | + | chr3_1:44409626-44409645 | None:intergenic | 20.0% |
| !!! | TTATCACTCCTATTTTTTAA+TGG | - | chr3_1:44409808-44409827 | Msa0358790:intron | 20.0% |
| !! | AAACAAATACATGATTACAT+TGG | - | chr3_1:44409898-44409917 | Msa0358790:intron | 20.0% |
| !!! | ACTTTTATATGCTTGAAAAT+CGG | - | chr3_1:44410193-44410212 | Msa0358790:intron | 20.0% |
| !!! | CCAATTTTTGCTTATATTTT+GGG | + | chr3_1:44410273-44410292 | None:intergenic | 20.0% |
| !!! | ACCAATTTTTGCTTATATTT+TGG | + | chr3_1:44410274-44410293 | None:intergenic | 20.0% |
| !!! | TATATGTTACATTCTTGTTT+AGG | - | chr3_1:44410385-44410404 | Msa0358790:CDS | 20.0% |
| !! | AGTATATGTTACCAAAAAAA+AGG | - | chr3_1:44410412-44410431 | Msa0358790:intron | 20.0% |
| !! | TTTCTGAACGAAATAATTTA+TGG | - | chr3_1:44410724-44410743 | Msa0358790:intron | 20.0% |
| !! | TTTGATAAAATTTACCTTTG+GGG | + | chr3_1:44411021-44411040 | None:intergenic | 20.0% |
| !! | CATTTGATAAAATTTACCTT+TGG | + | chr3_1:44411023-44411042 | None:intergenic | 20.0% |
| !!! | CAAAGGTAAATTTTATCAAA+TGG | - | chr3_1:44411021-44411040 | Msa0358790:intron | 20.0% |
| !! | ATGTTAAGCAAAGTAAAATA+AGG | + | chr3_1:44411404-44411423 | None:intergenic | 20.0% |
| !! | ATTTATTCAACAATGATAGT+TGG | + | chr3_1:44411771-44411790 | None:intergenic | 20.0% |
| !! | ACTATCATTGTTGAATAAAT+AGG | - | chr3_1:44411771-44411790 | Msa0358790:intron | 20.0% |
| !!! | TCTTTTTATTTTAGGAAAGA+GGG | + | chr3_1:44411953-44411972 | None:intergenic | 20.0% |
| !!! | ATCTTTTTATTTTAGGAAAG+AGG | + | chr3_1:44411954-44411973 | None:intergenic | 20.0% |
| !! | ATGAAGTAGTAAAATAGATT+AGG | + | chr3_1:44412114-44412133 | None:intergenic | 20.0% |
| !! | AATTGAAAAATTTAGGTATG+TGG | + | chr3_1:44412233-44412252 | None:intergenic | 20.0% |
| !! | AAGGGATAATTGAAAAATTT+AGG | + | chr3_1:44412240-44412259 | None:intergenic | 20.0% |
| !! | ATGAAAATCAATCAAAGAAA+TGG | + | chr3_1:44412338-44412357 | None:intergenic | 20.0% |
| !!! | TCATCAATCTTTTTTTCTTT+AGG | - | chr3_1:44412373-44412392 | Msa0358790:intron | 20.0% |
| !! | TCATTATTATGATCTAAATC+AGG | - | chr3_1:44412559-44412578 | Msa0358790:intron | 20.0% |
| !!! | ATTTCCCTGTTTTATATTAT+AGG | - | chr3_1:44412675-44412694 | Msa0358790:intron | 20.0% |
| !! | ACTACCTATAATATAAAACA+GGG | + | chr3_1:44412682-44412701 | None:intergenic | 20.0% |
| !! | TACTACCTATAATATAAAAC+AGG | + | chr3_1:44412683-44412702 | None:intergenic | 20.0% |
| !! | ATGTTTGAATTGATAAAAGT+AGG | + | chr3_1:44412746-44412765 | None:intergenic | 20.0% |
| !! | AATTTATTGCTATATATTGC+AGG | - | chr3_1:44412832-44412851 | Msa0358790:intron | 20.0% |
| !!! | TCTAATAAGAGTATAATGAT+AGG | + | chr3_1:44413138-44413157 | None:intergenic | 20.0% |
| !! | AACAATAATTCTAAGAGAAG+TGG | - | chr3_1:44408179-44408198 | Msa0358790:three_prime_UTR | 25.0% |
| ! | TATGAGATCTCTTAATTGAA+GGG | + | chr3_1:44408368-44408387 | None:intergenic | 25.0% |
| ! | ATATGAGATCTCTTAATTGA+AGG | + | chr3_1:44408369-44408388 | None:intergenic | 25.0% |
| !! | TTTGCAAATTAATTTTGCAG+AGG | - | chr3_1:44408560-44408579 | Msa0358790:intron | 25.0% |
| ! | AGGTTGGATCAAATATATAT+GGG | + | chr3_1:44408682-44408701 | None:intergenic | 25.0% |
| ! | AGGATTAAATTAATTGAGGT+TGG | + | chr3_1:44408698-44408717 | None:intergenic | 25.0% |
| ! | GGAATATATAGAACTAAAGT+AGG | + | chr3_1:44408904-44408923 | None:intergenic | 25.0% |
| !! | TAGTTCTATATATTCCCTTA+TGG | - | chr3_1:44408908-44408927 | Msa0358790:intron | 25.0% |
| !! | AGAAAGAGAATTTTCCATAA+GGG | + | chr3_1:44408925-44408944 | None:intergenic | 25.0% |
| !! | AAGAAAGAGAATTTTCCATA+AGG | + | chr3_1:44408926-44408945 | None:intergenic | 25.0% |
| ! | CTAATCCCTTAATGTAATTA+AGG | - | chr3_1:44409287-44409306 | Msa0358790:intron | 25.0% |
| ! | CCAATACCTTAATTACATTA+AGG | + | chr3_1:44409296-44409315 | None:intergenic | 25.0% |
| ! | CCTTAATGTAATTAAGGTAT+TGG | - | chr3_1:44409293-44409312 | Msa0358790:intron | 25.0% |
| ! | GATATGAAAATCTGTATATC+GGG | + | chr3_1:44409323-44409342 | None:intergenic | 25.0% |
| !!! | GTTGTATTATTTTTGTCTTG+TGG | - | chr3_1:44409593-44409612 | Msa0358790:intron | 25.0% |
| !!! | GATGAACATATTTTTTCAAG+AGG | - | chr3_1:44409625-44409644 | Msa0358790:intron | 25.0% |
| !!! | CTCGAACACTTATTTTTTAT+TGG | - | chr3_1:44409678-44409697 | Msa0358790:intron | 25.0% |
| ! | CTTTGGTACCATTAAAAAAT+AGG | + | chr3_1:44409819-44409838 | None:intergenic | 25.0% |
| ! | TTTAATCAAGGTGAATTCTT+TGG | + | chr3_1:44409836-44409855 | None:intergenic | 25.0% |
| ! | TTATATGAAGCAATTACCAT+AGG | - | chr3_1:44409983-44410002 | Msa0358790:intron | 25.0% |
| !!! | TTTTTGCTTATATTTTGGGA+CGG | + | chr3_1:44410269-44410288 | None:intergenic | 25.0% |
| ! | CCCAAAATATAAGCAAAAAT+TGG | - | chr3_1:44410270-44410289 | Msa0358790:intron | 25.0% |
| ! | TCAACGAAAGTTAATGTATT+TGG | - | chr3_1:44410293-44410312 | Msa0358790:intron | 25.0% |
| ! | TCAACAAAAGTTAATGTATC+TGG | + | chr3_1:44410332-44410351 | None:intergenic | 25.0% |
| !!! | CTTCACTTTTTCCTTTTTTT+TGG | + | chr3_1:44410426-44410445 | None:intergenic | 25.0% |
| ! | CATTCTCTTAACATTATTGA+TGG | + | chr3_1:44410887-44410906 | None:intergenic | 25.0% |
| ! | AATATGAACTTCCAAAAAGT+TGG | - | chr3_1:44411161-44411180 | Msa0358790:intron | 25.0% |
| ! | ATCCAAAAAAGATTTAAAGG+TGG | + | chr3_1:44411254-44411273 | None:intergenic | 25.0% |
| !!! | ACCTTTAAATCTTTTTTGGA+TGG | - | chr3_1:44411253-44411272 | Msa0358790:intron | 25.0% |
| ! | ACCATCCAAAAAAGATTTAA+AGG | + | chr3_1:44411257-44411276 | None:intergenic | 25.0% |
| !! | AAGAAGAGATGTAATGTTTT+AGG | + | chr3_1:44411295-44411314 | None:intergenic | 25.0% |
| !!! | AGATGGACTATTATTAGTTT+TGG | + | chr3_1:44411347-44411366 | None:intergenic | 25.0% |
| ! | TCACATGCTATATATGTAAT+AGG | + | chr3_1:44411494-44411513 | None:intergenic | 25.0% |
| ! | ATGATGTCATAGAGAAAATA+AGG | - | chr3_1:44411572-44411591 | Msa0358790:intron | 25.0% |
| ! | ACTTATTCAACAATGATAGT+TGG | + | chr3_1:44411631-44411650 | None:intergenic | 25.0% |
| ! | ACTATCATTGTTGAATAAGT+AGG | - | chr3_1:44411631-44411650 | Msa0358790:intron | 25.0% |
| !!! | AACCTCACAAATTTTTTCAA+AGG | - | chr3_1:44411654-44411673 | Msa0358790:intron | 25.0% |
| !! | TACCTTTGAAAAAATTTGTG+AGG | + | chr3_1:44411659-44411678 | None:intergenic | 25.0% |
| !! | AGGTAAACACTTACTATTTT+TGG | - | chr3_1:44411674-44411693 | Msa0358790:intron | 25.0% |
| ! | ATGATGTCATAGAGAAAATA+AGG | - | chr3_1:44411572-44411591 | Msa0358790:intron | 25.0% |
| !!! | AACCTCACAAATTTTTTCAA+AGG | - | chr3_1:44411654-44411673 | Msa0358790:intron | 25.0% |
| !! | TACCTTTGAAAAAATTTGTG+AGG | + | chr3_1:44411659-44411678 | None:intergenic | 25.0% |
| !! | AGGTAAACACTTACTATTTT+TGG | - | chr3_1:44411674-44411693 | Msa0358790:intron | 25.0% |
| !!! | TGGATGCATCTTTTTATTTT+AGG | + | chr3_1:44411961-44411980 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGGTAGATCATGA+AGG | + | chr3_1:44412007-44412026 | None:intergenic | 25.0% |
| !!! | AGTTGAAAAGTTGATGTATA+TGG | - | chr3_1:44412194-44412213 | Msa0358790:intron | 25.0% |
| !!! | TCAAAGAAATGGACTAATAT+AGG | + | chr3_1:44412327-44412346 | None:intergenic | 25.0% |
| !!! | CTTTGATTGATTTTCATTTC+TGG | - | chr3_1:44412341-44412360 | Msa0358790:intron | 25.0% |
| !! | GCATAAAAACCTAACTTTTA+AGG | - | chr3_1:44412615-44412634 | Msa0358790:intron | 25.0% |
| !! | CTTTAAGAACCTTAAAAGTT+AGG | + | chr3_1:44412627-44412646 | None:intergenic | 25.0% |
| !!! | TACTATTTTAATTTCTCTGC+TGG | - | chr3_1:44412701-44412720 | Msa0358790:CDS | 25.0% |
| ! | AATTAATAGAGAACTGAAAG+GGG | + | chr3_1:44412942-44412961 | None:intergenic | 25.0% |
| ! | GAATTAATAGAGAACTGAAA+GGG | + | chr3_1:44412943-44412962 | None:intergenic | 25.0% |
| ! | TCATGATTATTTGTCGTATT+TGG | + | chr3_1:44413007-44413026 | None:intergenic | 25.0% |
| ! | TAGGTATTAATACATGTGAA+AGG | + | chr3_1:44413119-44413138 | None:intergenic | 25.0% |
| CTCAGATTTAGATTCAACTT+TGG | + | chr3_1:44408150-44408169 | None:intergenic | 30.0% | |
| !! | ACAAAGTATTGATGAAGTTC+CGG | + | chr3_1:44408251-44408270 | None:intergenic | 30.0% |
| TTTGAATATGATGCAAGTGA+AGG | - | chr3_1:44408599-44408618 | Msa0358790:intron | 30.0% | |
| TTGAATATGATGCAAGTGAA+GGG | - | chr3_1:44408600-44408619 | Msa0358790:intron | 30.0% | |
| ! | CTGGAGATGACTTTTAATAT+GGG | + | chr3_1:44408637-44408656 | None:intergenic | 30.0% |
| ACATGAACTATATATGTACC+TGG | + | chr3_1:44408656-44408675 | None:intergenic | 30.0% | |
| GAGGTTGGATCAAATATATA+TGG | + | chr3_1:44408683-44408702 | None:intergenic | 30.0% | |
| TATAGAACTAAAGTAGGAAC+AGG | + | chr3_1:44408898-44408917 | None:intergenic | 30.0% | |
| AAGAAACAAAATCCAGTCTA+GGG | - | chr3_1:44408969-44408988 | Msa0358790:intron | 30.0% | |
| ACAATTACAACAGTAGTATG+TGG | - | chr3_1:44409009-44409028 | Msa0358790:intron | 30.0% | |
| AACGTTTGTGAGATATACAT+GGG | + | chr3_1:44409064-44409083 | None:intergenic | 30.0% | |
| ! | CATTCTTTTATACGAGATGA+GGG | + | chr3_1:44409361-44409380 | None:intergenic | 30.0% |
| ! | TCATTCTTTTATACGAGATG+AGG | + | chr3_1:44409362-44409381 | None:intergenic | 30.0% |
| ! | GCATGTTCACGTTTTTATAA+AGG | - | chr3_1:44409483-44409502 | Msa0358790:intron | 30.0% |
| !! | TGATGAGGTGATTTTAATCA+AGG | + | chr3_1:44409848-44409867 | None:intergenic | 30.0% |
| AAGATGTGTATATCTTGATG+AGG | + | chr3_1:44409863-44409882 | None:intergenic | 30.0% | |
| !!! | TTATTTATATTTTGGGACGG+AGG | - | chr3_1:44410359-44410378 | Msa0358790:CDS | 30.0% |
| !!! | TATTTATATTTTGGGACGGA+GGG | - | chr3_1:44410360-44410379 | Msa0358790:CDS | 30.0% |
| TTTAGATTTCCGAACAACAT+AGG | + | chr3_1:44410638-44410657 | None:intergenic | 30.0% | |
| CAATAATGTTAAGAGAATGC+TGG | - | chr3_1:44410888-44410907 | Msa0358790:intron | 30.0% | |
| !!! | GTCCACCTTTAAATCTTTTT+TGG | - | chr3_1:44411249-44411268 | Msa0358790:intron | 30.0% |
| CAATATAGACTCCTGAAAAA+AGG | + | chr3_1:44411375-44411394 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCAGGAGTCTATAT+TGG | - | chr3_1:44411373-44411392 | Msa0358790:intron | 30.0% |
| ! | GTTAACACACAGTTTTACTT+CGG | + | chr3_1:44411472-44411491 | None:intergenic | 30.0% |
| !! | GAAAGTCTTTTGTTGTGTAA+AGG | + | chr3_1:44412521-44412540 | None:intergenic | 30.0% |
| !! | AAGGTTCTTAAAGAGTATTC+TGG | - | chr3_1:44412634-44412653 | Msa0358790:intron | 30.0% |
| GGAATTAATAGAGAACTGAA+AGG | + | chr3_1:44412944-44412963 | None:intergenic | 30.0% | |
| !! | TCTAGTTCTATAAAATCCCA+TGG | - | chr3_1:44413034-44413053 | Msa0358790:intron | 30.0% |
| !! | CTAGTTCTATAAAATCCCAT+GGG | - | chr3_1:44413035-44413054 | Msa0358790:intron | 30.0% |
| GTTTATATAATCTCTCCCAT+GGG | + | chr3_1:44413053-44413072 | None:intergenic | 30.0% | |
| AGTTTATATAATCTCTCCCA+TGG | + | chr3_1:44413054-44413073 | None:intergenic | 30.0% | |
| TGGGAGAGATTATATAAACT+TGG | - | chr3_1:44413054-44413073 | Msa0358790:CDS | 30.0% | |
| ACAATACAAGACAAACAGAA+AGG | + | chr3_1:44413210-44413229 | None:intergenic | 30.0% | |
| GTTCAAACTGTTGAAAGTCT+TGG | - | chr3_1:44408269-44408288 | Msa0358790:three_prime_UTR | 35.0% | |
| TGAATATGATGCAAGTGAAG+GGG | - | chr3_1:44408601-44408620 | Msa0358790:intron | 35.0% | |
| ! | CCTGGAGATGACTTTTAATA+TGG | + | chr3_1:44408638-44408657 | None:intergenic | 35.0% |
| CCATATTAAAAGTCATCTCC+AGG | - | chr3_1:44408635-44408654 | Msa0358790:intron | 35.0% | |
| GAAGAAACAAAATCCAGTCT+AGG | - | chr3_1:44408968-44408987 | Msa0358790:intron | 35.0% | |
| CAACGTTTGTGAGATATACA+TGG | + | chr3_1:44409065-44409084 | None:intergenic | 35.0% | |
| AGAGAAGTGGGGTTTATAAT+GGG | + | chr3_1:44409144-44409163 | None:intergenic | 35.0% | |
| TAGAGAAGTGGGGTTTATAA+TGG | + | chr3_1:44409145-44409164 | None:intergenic | 35.0% | |
| AAGTAACAACGTAGAGAAGT+GGG | + | chr3_1:44409156-44409175 | None:intergenic | 35.0% | |
| AAAGTAACAACGTAGAGAAG+TGG | + | chr3_1:44409157-44409176 | None:intergenic | 35.0% | |
| GAAAAAATATGTTCATCGGC+TGG | + | chr3_1:44409622-44409641 | None:intergenic | 35.0% | |
| TGAAGCAATTACCATAGGTT+AGG | - | chr3_1:44409988-44410007 | Msa0358790:intron | 35.0% | |
| ATTACCATAGGTTAGGTACA+TGG | - | chr3_1:44409995-44410014 | Msa0358790:intron | 35.0% | |
| TTACCATAGGTTAGGTACAT+GGG | - | chr3_1:44409996-44410015 | Msa0358790:intron | 35.0% | |
| ! | TTTTCTCTTTGTCTTTCGTC+AGG | - | chr3_1:44410080-44410099 | Msa0358790:intron | 35.0% |
| ! | TGAGATGCTATAAAAGCACA+CGG | - | chr3_1:44410137-44410156 | Msa0358790:intron | 35.0% |
| AGCACTAATCCTATGTTGTT+CGG | - | chr3_1:44410626-44410645 | Msa0358790:intron | 35.0% | |
| GGAAATCTAAAAGCCATACT+TGG | - | chr3_1:44410647-44410666 | Msa0358790:intron | 35.0% | |
| AATCACACTTACACCAAGTA+TGG | + | chr3_1:44410663-44410682 | None:intergenic | 35.0% | |
| AATGTTAAGAGAATGCTGGT+CGG | - | chr3_1:44410892-44410911 | Msa0358790:intron | 35.0% | |
| ! | GTAAGAGTTCACCAACTTTT+TGG | + | chr3_1:44411175-44411194 | None:intergenic | 35.0% |
| TAGACTCCTGAAAAAAGGTA+TGG | + | chr3_1:44411370-44411389 | None:intergenic | 35.0% | |
| CCAAAGTCTCTGATATAGTT+TGG | + | chr3_1:44412085-44412104 | None:intergenic | 35.0% | |
| CCAAACTATATCAGAGACTT+TGG | - | chr3_1:44412082-44412101 | Msa0358790:intron | 35.0% | |
| TTGATATTCCTCGATCTGAA+GGG | + | chr3_1:44412485-44412504 | None:intergenic | 35.0% | |
| ATTGATATTCCTCGATCTGA+AGG | + | chr3_1:44412486-44412505 | None:intergenic | 35.0% | |
| GGATGGGAGATTTAGATATT+TGG | + | chr3_1:44412921-44412940 | None:intergenic | 35.0% | |
| CAGTTCTCTATTAATTCCAG+TGG | - | chr3_1:44412946-44412965 | Msa0358790:intron | 35.0% | |
| CAAACTGTTGAAAGTCTTGG+TGG | - | chr3_1:44408272-44408291 | Msa0358790:three_prime_UTR | 40.0% | |
| !!! | GACGGTGAATTTTTTCGCTA+TGG | - | chr3_1:44408518-44408537 | Msa0358790:intron | 40.0% |
| CTGCAAAAAATACCCTAGAC+TGG | + | chr3_1:44408984-44409003 | None:intergenic | 40.0% | |
| AGTAACAACGTAGAGAAGTG+GGG | + | chr3_1:44409155-44409174 | None:intergenic | 40.0% | |
| !!! | TGCTTATATTTTGGGACGGA+AGG | + | chr3_1:44410265-44410284 | None:intergenic | 40.0% |
| !! | TGGTCGGTTTTTAGATGTAC+AGG | - | chr3_1:44410908-44410927 | Msa0358790:intron | 40.0% |
| TTAGATGTACAGGAACGTGA+AGG | - | chr3_1:44410918-44410937 | Msa0358790:intron | 40.0% | |
| TAGATGTACAGGAACGTGAA+GGG | - | chr3_1:44410919-44410938 | Msa0358790:intron | 40.0% | |
| AACTATTCTTGCACCAACAC+TGG | - | chr3_1:44410945-44410964 | Msa0358790:intron | 40.0% | |
| ACCAACACTGGAAGAAAACA+AGG | - | chr3_1:44410957-44410976 | Msa0358790:intron | 40.0% | |
| ! | CCTGAAAAAAGGTATGGAGA+TGG | + | chr3_1:44411364-44411383 | None:intergenic | 40.0% |
| !!! | CCATCTCCATACCTTTTTTC+AGG | - | chr3_1:44411361-44411380 | Msa0358790:intron | 40.0% |
| TCCATGTTAGACCTCTTCTT+TGG | - | chr3_1:44411977-44411996 | Msa0358790:intron | 40.0% | |
| CCATGTTAGACCTCTTCTTT+GGG | - | chr3_1:44411978-44411997 | Msa0358790:intron | 40.0% | |
| TCGATCTGAAGGGAAATGAA+AGG | + | chr3_1:44412475-44412494 | None:intergenic | 40.0% | |
| TTTCATTTCCCTTCAGATCG+AGG | - | chr3_1:44412474-44412493 | Msa0358790:intron | 40.0% | |
| ATAGAGAACTGAAAGGGGAT+GGG | + | chr3_1:44412937-44412956 | None:intergenic | 40.0% | |
| AATAGAGAACTGAAAGGGGA+TGG | + | chr3_1:44412938-44412957 | None:intergenic | 40.0% | |
| AGACCTGGATCTTCTTCTCT+TGG | - | chr3_1:44408807-44408826 | Msa0358790:CDS | 45.0% | |
| AGACCAAGAGAAGAAGATCC+AGG | + | chr3_1:44408813-44408832 | None:intergenic | 45.0% | |
| ATGCCCATGTACCTAACCTA+TGG | + | chr3_1:44410002-44410021 | None:intergenic | 45.0% | |
| !!! | GCCTTGTTTTCTTCCAGTGT+TGG | + | chr3_1:44410961-44410980 | None:intergenic | 45.0% |
| !! | TTACCTTTGGGGTGAACAAC+TGG | + | chr3_1:44411010-44411029 | None:intergenic | 45.0% |
| CCCAAAGAAGAGGTCTAACA+TGG | + | chr3_1:44411981-44412000 | None:intergenic | 45.0% | |
| !! | ATGAAGGCATCCCAAAGAAG+AGG | + | chr3_1:44411991-44412010 | None:intergenic | 45.0% |
| ! | AGAAAGCATGCACTTGACTC+AGG | + | chr3_1:44412860-44412879 | None:intergenic | 45.0% |
| !! | AAAATGAAATAAAAATAAAA+GGG | + | chr3_1:44412258-44412277 | None:intergenic | 5.0% |
| !! | TAAAATGAAATAAAAATAAA+AGG | + | chr3_1:44412259-44412278 | None:intergenic | 5.0% |
| !!! | GGCGTGGCTGTTTTGATTTG+TGG | + | chr3_1:44408217-44408236 | None:intergenic | 50.0% |
| GGTGAACAACTGGAGCAGAT+TGG | + | chr3_1:44411000-44411019 | None:intergenic | 50.0% | |
| CCTTGATCACTATGCACCAC+TGG | + | chr3_1:44412965-44412984 | None:intergenic | 50.0% | |
| CCAGTGGTGCATAGTGATCA+AGG | - | chr3_1:44412962-44412981 | Msa0358790:intron | 50.0% | |
| CAAAACAGCCACGCCTTCGA+TGG | - | chr3_1:44408222-44408241 | Msa0358790:three_prime_UTR | 55.0% | |
| GAAGTTCCGGTGTCCATCGA+AGG | + | chr3_1:44408238-44408257 | None:intergenic | 55.0% | |
| GCTCCAGTTGTTCACCCCAA+AGG | - | chr3_1:44411004-44411023 | Msa0358790:intron | 55.0% | |
| GCCACGCCTTCGATGGACAC+CGG | - | chr3_1:44408229-44408248 | Msa0358790:three_prime_UTR | 65.0% | |
| TCCGGTGTCCATCGAAGGCG+TGG | + | chr3_1:44408233-44408252 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 44408108 | 44413244 | 44408108 | ID=Msa0358790;Name=Msa0358790 |
| chr3_1 | mRNA | 44408108 | 44413244 | 44408108 | ID=Msa0358790-mRNA-1;Parent=Msa0358790;Name=Msa0358790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=65|0.5|0.4|1|0.5|0.8|5|315|145 |
| chr3_1 | exon | 44408108 | 44408498 | 44408108 | ID=Msa0358790-mRNA-1:exon:7889;Parent=Msa0358790-mRNA-1 |
| chr3_1 | exon | 44408804 | 44408862 | 44408804 | ID=Msa0358790-mRNA-1:exon:7888;Parent=Msa0358790-mRNA-1 |
| chr3_1 | exon | 44410327 | 44410422 | 44410327 | ID=Msa0358790-mRNA-1:exon:7887;Parent=Msa0358790-mRNA-1 |
| chr3_1 | exon | 44412696 | 44412772 | 44412696 | ID=Msa0358790-mRNA-1:exon:7886;Parent=Msa0358790-mRNA-1 |
| chr3_1 | exon | 44413050 | 44413244 | 44413050 | ID=Msa0358790-mRNA-1:exon:7885;Parent=Msa0358790-mRNA-1 |
| chr3_1 | five_prime_UTR | 44413180 | 44413244 | 44413180 | ID=Msa0358790-mRNA-1:five_prime_utr;Parent=Msa0358790-mRNA-1 |
| chr3_1 | CDS | 44413050 | 44413179 | 44413050 | ID=Msa0358790-mRNA-1:cds;Parent=Msa0358790-mRNA-1 |
| chr3_1 | CDS | 44412696 | 44412772 | 44412696 | ID=Msa0358790-mRNA-1:cds;Parent=Msa0358790-mRNA-1 |
| chr3_1 | CDS | 44410327 | 44410422 | 44410327 | ID=Msa0358790-mRNA-1:cds;Parent=Msa0358790-mRNA-1 |
| chr3_1 | CDS | 44408804 | 44408862 | 44408804 | ID=Msa0358790-mRNA-1:cds;Parent=Msa0358790-mRNA-1 |
| chr3_1 | CDS | 44408423 | 44408498 | 44408423 | ID=Msa0358790-mRNA-1:cds;Parent=Msa0358790-mRNA-1 |
| chr3_1 | three_prime_UTR | 44408108 | 44408422 | 44408108 | ID=Msa0358790-mRNA-1:three_prime_utr;Parent=Msa0358790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
