Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0360480 | XP_003600003.2 | 73.664 | 262 | 34 | 5 | 10 | 259 | 1 | 239 | 3.02e-125 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0360480 | sp|Q9LT81|C3H39_ARATH | 36.268 | 284 | 117 | 8 | 32 | 251 | 93 | 376 | 3.62e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0360480 | G7J1X0 | 73.664 | 262 | 34 | 5 | 10 | 259 | 1 | 239 | 1.44e-125 | 365 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0360480 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0360480 | MtrunA17_Chr3g0098251 | 77.540 | 187 | 25 | 3 | 10 | 188 | 1 | 178 | 3.76e-99 | 288 |
| Msa0360480 | MtrunA17_Chr8g0360671 | 73.333 | 135 | 13 | 3 | 62 | 188 | 40 | 159 | 5.71e-60 | 187 |
| Msa0360480 | MtrunA17_Chr4g0063401 | 52.683 | 205 | 63 | 7 | 16 | 187 | 44 | 247 | 6.96e-59 | 187 |
| Msa0360480 | MtrunA17_Chr4g0063361 | 46.890 | 209 | 91 | 5 | 5 | 193 | 39 | 247 | 8.99e-54 | 174 |
| Msa0360480 | MtrunA17_Chr4g0063391 | 44.340 | 212 | 87 | 6 | 1 | 186 | 1 | 207 | 7.89e-49 | 160 |
| Msa0360480 | MtrunA17_Chr4g0063371 | 38.828 | 273 | 98 | 10 | 1 | 247 | 1 | 230 | 2.38e-42 | 144 |
| Msa0360480 | MtrunA17_Chr8g0366501 | 27.241 | 290 | 132 | 9 | 37 | 248 | 86 | 374 | 9.54e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0360480 | AT3G19360.1 | 36.268 | 284 | 117 | 8 | 32 | 251 | 93 | 376 | 3.68e-43 | 150 |
| Msa0360480 | AT3G19360.2 | 36.268 | 284 | 117 | 8 | 32 | 251 | 93 | 376 | 3.68e-43 | 150 |
| Msa0360480 | AT1G32360.1 | 28.146 | 302 | 123 | 9 | 37 | 248 | 85 | 382 | 9.99e-18 | 82.0 |
Find 83 sgRNAs with CRISPR-Local
Find 500 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGCCCTCTTGTTCTT+TGG | 0.226992 | 3_1:+49810631 | None:intergenic |
| CGGAGATGGTTCTAATAGTT+TGG | 0.293400 | 3_1:-49810230 | Msa0360480:CDS |
| TTTGCCACACCTAGACTTAC+TGG | 0.306973 | 3_1:+49804302 | None:intergenic |
| ATAGACTTAGGGATGATTCT+TGG | 0.310304 | 3_1:-49810291 | Msa0360480:intron |
| AAACAGGGCGCTGTCCCTTT+GGG | 0.314602 | 3_1:-49810135 | Msa0360480:CDS |
| TCCTATGCACTTGGCAAGTT+GGG | 0.333919 | 3_1:+49804176 | None:intergenic |
| CAAACAGGGCGCTGTCCCTT+TGG | 0.343335 | 3_1:-49810136 | Msa0360480:CDS |
| TAAGGAAGCCATTGCCGAAT+TGG | 0.366423 | 3_1:-49810453 | Msa0360480:CDS |
| TGTCCCACGTGGCAGCAAAC+AGG | 0.371812 | 3_1:-49810151 | Msa0360480:CDS |
| TTGCCACACCTAGACTTGTT+GGG | 0.387975 | 3_1:+49808991 | None:intergenic |
| TCGCCTGTTTCTTTGTTTGA+TGG | 0.390448 | 3_1:+49810568 | None:intergenic |
| TTCCGGTAAGTGCCCCTTGA+TGG | 0.393985 | 3_1:+49810184 | None:intergenic |
| TTTGCCACACCTAGACTTGT+TGG | 0.401025 | 3_1:+49808990 | None:intergenic |
| CTCCTATGCACTTGGCAAGT+TGG | 0.421161 | 3_1:+49804175 | None:intergenic |
| ACCTAGACTTGTTGGGATGC+TGG | 0.423276 | 3_1:+49808998 | None:intergenic |
| CTAATAGTTTGGAAGGCAAC+AGG | 0.423700 | 3_1:-49810219 | Msa0360480:CDS |
| ATGATATCGCTGTGGTGGTC+TGG | 0.425060 | 3_1:+49810658 | None:intergenic |
| CAAGGAATGGATGCAGTGTC+TGG | 0.436419 | 3_1:-49810407 | Msa0360480:CDS |
| AGCCATCAAGGGGCACTTAC+CGG | 0.436557 | 3_1:-49810186 | Msa0360480:CDS |
| CTTCCATCAAACAAAGAAAC+AGG | 0.444809 | 3_1:-49810571 | Msa0360480:CDS |
| TCCGATACTTCCAATGCTTA+AGG | 0.447887 | 3_1:+49810249 | None:intergenic |
| TGGGACACAGCTTAATCTTC+CGG | 0.449247 | 3_1:+49810167 | None:intergenic |
| CACTATGCTCACGGAGAAGC+AGG | 0.450518 | 3_1:-49810103 | Msa0360480:intron |
| AATGGTGAGGAATGTCCTTA+TGG | 0.454214 | 3_1:-49810334 | Msa0360480:CDS |
| GTTTCTTTGTTTGATGGAAG+AGG | 0.456265 | 3_1:+49810574 | None:intergenic |
| CAGAAAATCATTCACAAGAT+GGG | 0.463529 | 3_1:-49810376 | Msa0360480:CDS |
| TCAATGCTATATATGCTGAT+TGG | 0.472915 | 3_1:-49804223 | Msa0360480:CDS |
| TCAGAAAATCATTCACAAGA+TGG | 0.481007 | 3_1:-49810377 | Msa0360480:CDS |
| CTAAGAAGAAGCGTTTACTT+TGG | 0.481385 | 3_1:-49804265 | Msa0360480:CDS |
| CTCACGGGGTTGGTGAGATA+AGG | 0.482058 | 3_1:-49810471 | Msa0360480:CDS |
| TCTAGGTGTGGCAAAGGAAG+TGG | 0.482685 | 3_1:-49804294 | Msa0360480:CDS |
| GGTCTGTGAACAAGCCATCA+AGG | 0.487139 | 3_1:-49810198 | Msa0360480:CDS |
| TTTCTTTGTTTGATGGAAGA+GGG | 0.487321 | 3_1:+49810575 | None:intergenic |
| CCAGCTAGCTCCTTCCAATT+CGG | 0.489768 | 3_1:+49810439 | None:intergenic |
| AGTAAACGCTTCTTCTTAGC+CGG | 0.491669 | 3_1:+49804269 | None:intergenic |
| TAGGTACAATGTTCACCTTT+CGG | 0.492110 | 3_1:+49810496 | None:intergenic |
| AAACAACACTTATCACCATA+AGG | 0.495083 | 3_1:+49810319 | None:intergenic |
| CTGGCTCTCGCAGCAAGGAA+TGG | 0.502304 | 3_1:-49810420 | Msa0360480:CDS |
| ACCTAGACTTACTGGGATGC+TGG | 0.504675 | 3_1:+49804310 | None:intergenic |
| AACATTGTACCTATGCTCAC+GGG | 0.508915 | 3_1:-49810486 | Msa0360480:CDS |
| GATGCTGGTAGGTGCATCAT+TGG | 0.510548 | 3_1:+49804325 | None:intergenic |
| CCGAATTGGAAGGAGCTAGC+TGG | 0.513357 | 3_1:-49810439 | Msa0360480:CDS |
| AGCTCCTTCCAATTCGGCAA+TGG | 0.514329 | 3_1:+49810445 | None:intergenic |
| GCCTTAAGCATTGGAAGTAT+CGG | 0.520735 | 3_1:-49810250 | Msa0360480:CDS |
| GAGGCCTGTGCCTTAAGCAT+TGG | 0.522134 | 3_1:-49810259 | Msa0360480:CDS |
| GTCTGTGAACAAGCCATCAA+GGG | 0.530594 | 3_1:-49810197 | Msa0360480:CDS |
| GATGGTTCTAATAGTTTGGA+AGG | 0.532918 | 3_1:-49810226 | Msa0360480:CDS |
| CGCCCTGTTTGCTGCCACGT+GGG | 0.535740 | 3_1:+49810148 | None:intergenic |
| GTCCCACGTGGCAGCAAACA+GGG | 0.536127 | 3_1:-49810150 | Msa0360480:CDS |
| ACTTCCAATGCTTAAGGCAC+AGG | 0.544832 | 3_1:+49810255 | None:intergenic |
| TAGTGAAAGTCGTCCCCAAA+GGG | 0.546109 | 3_1:+49810121 | None:intergenic |
| TGTACCTATGCTCACGGGGT+TGG | 0.546278 | 3_1:-49810481 | Msa0360480:CDS |
| TGTGGCAAAGGAAGTGGAGC+CGG | 0.553955 | 3_1:-49804288 | Msa0360480:CDS |
| TTGCCACACCTAGACTTACT+GGG | 0.557663 | 3_1:+49804303 | None:intergenic |
| AACAGGGCGCTGTCCCTTTG+GGG | 0.562619 | 3_1:-49810134 | Msa0360480:CDS |
| AGGTTTGGTAATTGTCCGAA+AGG | 0.564006 | 3_1:-49810511 | Msa0360480:CDS |
| ACCAGCATCCCAACAAGTCT+AGG | 0.572783 | 3_1:-49808999 | Msa0360480:intron |
| GACGACTTTCACTATGCTCA+CGG | 0.575931 | 3_1:-49810112 | Msa0360480:CDS |
| GAACATTGTACCTATGCTCA+CGG | 0.579167 | 3_1:-49810487 | Msa0360480:CDS |
| ACTCAAGTCTCCTATGCACT+TGG | 0.585853 | 3_1:+49804167 | None:intergenic |
| AGCATTGGAAGTATCGGAGA+TGG | 0.590771 | 3_1:-49810244 | Msa0360480:CDS |
| GAAGCCATTGCCGAATTGGA+AGG | 0.591683 | 3_1:-49810449 | Msa0360480:CDS |
| TCATGTTTCCAAAGAACAAG+AGG | 0.592600 | 3_1:-49810639 | Msa0360480:CDS |
| AGAAAATCATTCACAAGATG+GGG | 0.602501 | 3_1:-49810375 | Msa0360480:CDS |
| AGTAAGTCTAGGTGTGGCAA+AGG | 0.602677 | 3_1:-49804300 | Msa0360480:CDS |
| GCGCCCTGTTTGCTGCCACG+TGG | 0.603324 | 3_1:+49810147 | None:intergenic |
| GGCAAGTTGGGATGAACAAG+AGG | 0.607119 | 3_1:+49804188 | None:intergenic |
| GCTAGCTGGCTCTCGCAGCA+AGG | 0.609767 | 3_1:-49810425 | Msa0360480:CDS |
| AGACTTACTGGGATGCTGGT+AGG | 0.616674 | 3_1:+49804314 | None:intergenic |
| CTCACCAACCCCGTGAGCAT+AGG | 0.617079 | 3_1:+49810477 | None:intergenic |
| TCCCAACTTGCCAAGTGCAT+AGG | 0.618646 | 3_1:-49804177 | None:intergenic |
| ACCAGCATCCCAGTAAGTCT+AGG | 0.622315 | 3_1:-49804311 | Msa0360480:CDS |
| ATAGTGAAAGTCGTCCCCAA+AGG | 0.638930 | 3_1:+49810120 | None:intergenic |
| CATGTTTCCAAAGAACAAGA+GGG | 0.650159 | 3_1:-49810638 | Msa0360480:CDS |
| CATCCCAGTAAGTCTAGGTG+TGG | 0.656724 | 3_1:-49804306 | Msa0360480:CDS |
| TCTGTGAACAAGCCATCAAG+GGG | 0.665966 | 3_1:-49810196 | Msa0360480:CDS |
| CAAGAAATACTACAATGGTG+AGG | 0.666991 | 3_1:-49810347 | Msa0360480:CDS |
| CTATGCAAGAAATACTACAA+TGG | 0.669884 | 3_1:-49810352 | Msa0360480:CDS |
| GAAACATGATATCGCTGTGG+TGG | 0.671066 | 3_1:+49810653 | None:intergenic |
| TGATTCTTGGAAATCAAGAG+AGG | 0.676002 | 3_1:-49810278 | Msa0360480:CDS |
| ACATTGTACCTATGCTCACG+GGG | 0.692970 | 3_1:-49810485 | Msa0360480:CDS |
| AGATTAAGCTGTGTCCCACG+TGG | 0.719151 | 3_1:-49810162 | Msa0360480:CDS |
| TTGGAAACATGATATCGCTG+TGG | 0.734366 | 3_1:+49810650 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTAAAAAAAATTACAAGA+CGG | - | chr3_1:49805726-49805745 | Msa0360480:intron | 15.0% |
| !! | TTAATACTATATATGTTGAT+TGG | - | chr3_1:49805934-49805953 | Msa0360480:intron | 15.0% |
| !!! | TGTTAATTGTAATAGTTTTA+TGG | - | chr3_1:49806062-49806081 | Msa0360480:intron | 15.0% |
| !!! | GAATTACATTTTGTATAATA+TGG | - | chr3_1:49806277-49806296 | Msa0360480:intron | 15.0% |
| !!! | TTTAATAAAAGTACCTATTA+AGG | - | chr3_1:49806710-49806729 | Msa0360480:intron | 15.0% |
| !!! | CATATTTAAATACTTTTCAT+TGG | + | chr3_1:49806773-49806792 | None:intergenic | 15.0% |
| !!! | TTTTATTACTTTTTTAAACG+TGG | - | chr3_1:49806951-49806970 | Msa0360480:intron | 15.0% |
| !!! | TTTATTACTTTTTTAAACGT+GGG | - | chr3_1:49806952-49806971 | Msa0360480:intron | 15.0% |
| !! | TTGTTTAAGGAAAAAATAAT+TGG | - | chr3_1:49807985-49808004 | Msa0360480:intron | 15.0% |
| !! | CAATCAAATAAAATAATTGT+TGG | + | chr3_1:49809465-49809484 | None:intergenic | 15.0% |
| !! | TATAAAATATTGTGAAACAG+CGG | + | chr3_1:49805375-49805394 | None:intergenic | 20.0% |
| !!! | TCACAATATTTTATACTAGA+TGG | - | chr3_1:49805380-49805399 | Msa0360480:intron | 20.0% |
| !!! | CACAATATTTTATACTAGAT+GGG | - | chr3_1:49805381-49805400 | Msa0360480:intron | 20.0% |
| !!! | ACAATATTTTATACTAGATG+GGG | - | chr3_1:49805382-49805401 | Msa0360480:intron | 20.0% |
| !! | TTATAACAATCAAAACTGTT+TGG | - | chr3_1:49805749-49805768 | Msa0360480:intron | 20.0% |
| !! | ATTTGATTGTCTTATACATT+TGG | - | chr3_1:49806250-49806269 | Msa0360480:intron | 20.0% |
| !!! | AGTTTTGAGAATTTTTGTTT+TGG | + | chr3_1:49806407-49806426 | None:intergenic | 20.0% |
| !! | AACAAAAATTCTCAAAACTT+TGG | - | chr3_1:49806408-49806427 | Msa0360480:intron | 20.0% |
| !! | ACAAAAATTCTCAAAACTTT+GGG | - | chr3_1:49806409-49806428 | Msa0360480:intron | 20.0% |
| !!! | TAAGAAGTAGTTTTGAAAAA+TGG | + | chr3_1:49806614-49806633 | None:intergenic | 20.0% |
| !! | GTTTAATATGTAAAGATAGT+GGG | + | chr3_1:49806797-49806816 | None:intergenic | 20.0% |
| !! | TGTTTAATATGTAAAGATAG+TGG | + | chr3_1:49806798-49806817 | None:intergenic | 20.0% |
| !!! | TATTACTCATTTTTACAAGT+GGG | - | chr3_1:49806831-49806850 | Msa0360480:intron | 20.0% |
| !! | GTAATAAAATATGTACTACT+TGG | + | chr3_1:49806899-49806918 | None:intergenic | 20.0% |
| !! | CATTCAAAATCAACTTTATT+GGG | - | chr3_1:49807398-49807417 | Msa0360480:intron | 20.0% |
| !!! | AAAGATCAAAACTTGTTATT+TGG | - | chr3_1:49807541-49807560 | Msa0360480:intron | 20.0% |
| !!! | AAGATCAAAACTTGTTATTT+GGG | - | chr3_1:49807542-49807561 | Msa0360480:intron | 20.0% |
| !!! | TTTTCCTTATAAAAACATGT+TGG | - | chr3_1:49807864-49807883 | Msa0360480:intron | 20.0% |
| !!! | CAACTGTTGATAATTTTATT+TGG | - | chr3_1:49808220-49808239 | Msa0360480:intron | 20.0% |
| !!! | TTTTCCATCTAGATTTTTTA+AGG | - | chr3_1:49808533-49808552 | Msa0360480:intron | 20.0% |
| !!! | GATTTAGTTTTCAATAGTTT+AGG | + | chr3_1:49809017-49809036 | None:intergenic | 20.0% |
| !!! | TGATTTTATATCATCAAATG+TGG | - | chr3_1:49809232-49809251 | Msa0360480:intron | 20.0% |
| !! | TATGTTTGATTGTAACATTA+TGG | + | chr3_1:49810269-49810288 | None:intergenic | 20.0% |
| !!! | TTTTTACAATATGCATATAC+AGG | + | chr3_1:49810401-49810420 | None:intergenic | 20.0% |
| !! | TTATAACAATCAAAACTGTT+TGG | - | chr3_1:49805749-49805768 | Msa0360480:intron | 20.0% |
| !! | TTGTTTTCTTCATAGACTTA+GGG | - | chr3_1:49804543-49804562 | Msa0360480:intron | 25.0% |
| ! | GGTAATGATAATATTGGTAT+TGG | - | chr3_1:49804763-49804782 | Msa0360480:intron | 25.0% |
| !! | TTTTCGCTATTTAACTAGAA+TGG | - | chr3_1:49805433-49805452 | Msa0360480:intron | 25.0% |
| ! | ATTTGTACATTTCTCATTCA+AGG | - | chr3_1:49805529-49805548 | Msa0360480:intron | 25.0% |
| !!! | TCATTCAAGGTTTTAAATTG+TGG | - | chr3_1:49805542-49805561 | Msa0360480:intron | 25.0% |
| ! | TACAAGTTATCACACAAAAA+CGG | + | chr3_1:49805697-49805716 | None:intergenic | 25.0% |
| !! | TTTAATTTCCACCAAAGTAA+AGG | + | chr3_1:49805906-49805925 | None:intergenic | 25.0% |
| ! | TTCATGCTAAAAGACAATAA+AGG | - | chr3_1:49806508-49806527 | Msa0360480:intron | 25.0% |
| ! | TCATGCTAAAAGACAATAAA+GGG | - | chr3_1:49806509-49806528 | Msa0360480:intron | 25.0% |
| ! | CTTTATTAGTATATTGCCAT+TGG | + | chr3_1:49806747-49806766 | None:intergenic | 25.0% |
| !!! | CTATTACTCATTTTTACAAG+TGG | - | chr3_1:49806830-49806849 | Msa0360480:intron | 25.0% |
| ! | GTAATAAAATGTGTACTACT+TGG | + | chr3_1:49806858-49806877 | None:intergenic | 25.0% |
| ! | TTATTACTTCTTTATGCAAG+TGG | - | chr3_1:49806871-49806890 | Msa0360480:intron | 25.0% |
| ! | TATTACTTCTTTATGCAAGT+GGG | - | chr3_1:49806872-49806891 | Msa0360480:intron | 25.0% |
| ! | TTATTACTTCTTTATGCAAG+TGG | - | chr3_1:49806871-49806890 | Msa0360480:intron | 25.0% |
| ! | TATTACTTCTTTATGCAAGT+GGG | - | chr3_1:49806872-49806891 | Msa0360480:intron | 25.0% |
| ! | GTAATAAAATGTGTACTACT+TGG | + | chr3_1:49806858-49806877 | None:intergenic | 25.0% |
| !!! | AAATACCATCTTTGAAATGA+AGG | - | chr3_1:49807228-49807247 | Msa0360480:intron | 25.0% |
| !!! | CCAATAAAGTTGATTTTGAA+TGG | + | chr3_1:49807400-49807419 | None:intergenic | 25.0% |
| ! | CCATTCAAAATCAACTTTAT+TGG | - | chr3_1:49807397-49807416 | Msa0360480:intron | 25.0% |
| !! | TTCCAAACTGATTCATATTT+GGG | + | chr3_1:49807472-49807491 | None:intergenic | 25.0% |
| !!! | AGATCAAAACTTGTTATTTG+GGG | - | chr3_1:49807543-49807562 | Msa0360480:intron | 25.0% |
| !!! | TTGACCAACATGTTTTTATA+AGG | + | chr3_1:49807871-49807890 | None:intergenic | 25.0% |
| ! | CTAGCATATATAAGGATTTA+AGG | - | chr3_1:49807962-49807981 | Msa0360480:intron | 25.0% |
| !! | TAAGGATTTAAGGTTGTTTA+AGG | - | chr3_1:49807972-49807991 | Msa0360480:intron | 25.0% |
| ! | TACAAACTTGTATCAGAAAA+AGG | + | chr3_1:49808510-49808529 | None:intergenic | 25.0% |
| ! | TTTATATCATCAAATGTGGA+TGG | - | chr3_1:49809236-49809255 | Msa0360480:intron | 25.0% |
| ! | ACATCATTTCTATCATAAAG+TGG | + | chr3_1:49809302-49809321 | None:intergenic | 25.0% |
| !!! | TATATGAAGGTACTAAACTT+AGG | - | chr3_1:49809556-49809575 | Msa0360480:intron | 25.0% |
| !!! | ATATGAAGGTACTAAACTTA+GGG | - | chr3_1:49809557-49809576 | Msa0360480:intron | 25.0% |
| ! | AAAGTGAATGAAGCAAATAT+AGG | - | chr3_1:49809605-49809624 | Msa0360480:intron | 25.0% |
| !! | ACAACATTTTGTACTAGATA+GGG | - | chr3_1:49810035-49810054 | Msa0360480:intron | 25.0% |
| ! | TTTCTTTGTTTGATGGAAGA+GGG | + | chr3_1:49804273-49804292 | None:intergenic | 30.0% |
| ! | ATTTGTCATAAGTTCAGGTT+TGG | - | chr3_1:49804319-49804338 | Msa0360480:CDS | 30.0% |
| TCAGAAAATCATTCACAAGA+TGG | - | chr3_1:49804468-49804487 | Msa0360480:intron | 30.0% | |
| CAGAAAATCATTCACAAGAT+GGG | - | chr3_1:49804469-49804488 | Msa0360480:intron | 30.0% | |
| AGAAAATCATTCACAAGATG+GGG | - | chr3_1:49804470-49804489 | Msa0360480:intron | 30.0% | |
| CTATGCAAGAAATACTACAA+TGG | - | chr3_1:49804493-49804512 | Msa0360480:intron | 30.0% | |
| AAACAACACTTATCACCATA+AGG | + | chr3_1:49804529-49804548 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCTTCATAGACTT+AGG | - | chr3_1:49804542-49804561 | Msa0360480:intron | 30.0% |
| GAAGCAGGTAATGATAATAT+TGG | - | chr3_1:49804757-49804776 | Msa0360480:intron | 30.0% | |
| TTATAGTGTTTGATTGTGTG+TGG | - | chr3_1:49804900-49804919 | Msa0360480:intron | 30.0% | |
| ! | GTGTGTGATATTTTCATGTT+TGG | - | chr3_1:49804934-49804953 | Msa0360480:intron | 30.0% |
| AGAATATGATCAACTACCTT+AGG | + | chr3_1:49804982-49805001 | None:intergenic | 30.0% | |
| !! | TCATATTCTGAAAGAGCATT+TGG | - | chr3_1:49804993-49805012 | Msa0360480:intron | 30.0% |
| TTGTTAAATTGTCGCCATAA+CGG | - | chr3_1:49805101-49805120 | Msa0360480:intron | 30.0% | |
| TTATACTAGATGGGGTATAA+TGG | - | chr3_1:49805390-49805409 | Msa0360480:intron | 30.0% | |
| TATGTTTGACTGCAACATTA+TGG | + | chr3_1:49805580-49805599 | None:intergenic | 30.0% | |
| ACAAGTTATCACACAAAAAC+GGG | + | chr3_1:49805696-49805715 | None:intergenic | 30.0% | |
| AACAGTTAGAAGAAGATACA+AGG | + | chr3_1:49805778-49805797 | None:intergenic | 30.0% | |
| ! | TGGATTTCAGAAACTTTTTG+TGG | - | chr3_1:49806126-49806145 | Msa0360480:intron | 30.0% |
| ! | GGATTTCAGAAACTTTTTGT+GGG | - | chr3_1:49806127-49806146 | Msa0360480:intron | 30.0% |
| ACATGAAACTTAGTCAACTT+AGG | + | chr3_1:49806483-49806502 | None:intergenic | 30.0% | |
| AAAGACAATAAAGGGCAATT+TGG | - | chr3_1:49806517-49806536 | Msa0360480:intron | 30.0% | |
| AAGACAATAAAGGGCAATTT+GGG | - | chr3_1:49806518-49806537 | Msa0360480:intron | 30.0% | |
| ! | GTTGCTTTGATTTCTTAGTA+TGG | + | chr3_1:49806592-49806611 | None:intergenic | 30.0% |
| GGTTGTTCATGATTATTGAT+GGG | + | chr3_1:49807202-49807221 | None:intergenic | 30.0% | |
| TGGTTGTTCATGATTATTGA+TGG | + | chr3_1:49807203-49807222 | None:intergenic | 30.0% | |
| CAATAATCATGAACAACCAT+TGG | - | chr3_1:49807204-49807223 | Msa0360480:intron | 30.0% | |
| ! | TCAAAGATGGTATTTTCCAA+TGG | + | chr3_1:49807223-49807242 | None:intergenic | 30.0% |
| ! | AAATGAGCATTTCTGAAAGT+AGG | + | chr3_1:49807295-49807314 | None:intergenic | 30.0% |
| ATAAAAACAGGTGAAGAAGA+TGG | + | chr3_1:49807364-49807383 | None:intergenic | 30.0% | |
| TCAAAATCAACTTTATTGGG+TGG | - | chr3_1:49807401-49807420 | Msa0360480:intron | 30.0% | |
| AACCCAAATATGAATCAGTT+TGG | - | chr3_1:49807467-49807486 | Msa0360480:intron | 30.0% | |
| ! | CTTCCAAACTGATTCATATT+TGG | + | chr3_1:49807473-49807492 | None:intergenic | 30.0% |
| !! | AGTTTTGATCTTTCTTGATG+CGG | + | chr3_1:49807534-49807553 | None:intergenic | 30.0% |
| ! | AATACCTTTGTGTTTTCCTT+TGG | - | chr3_1:49807592-49807611 | Msa0360480:intron | 30.0% |
| TCTTCAAGTGGTTTGAAAAT+AGG | + | chr3_1:49807679-49807698 | None:intergenic | 30.0% | |
| TTTCAAACCACTTGAAGATT+AGG | - | chr3_1:49807681-49807700 | Msa0360480:intron | 30.0% | |
| TTCATTTCCTAATCTTCAAG+TGG | + | chr3_1:49807691-49807710 | None:intergenic | 30.0% | |
| TGAAGATTAGGAAATGAAAG+AGG | - | chr3_1:49807693-49807712 | Msa0360480:intron | 30.0% | |
| ATGGATACTTTCATTGGTAA+AGG | - | chr3_1:49807790-49807809 | Msa0360480:intron | 30.0% | |
| ! | ATGAAGCATTTATTGCTACT+TGG | - | chr3_1:49807827-49807846 | Msa0360480:intron | 30.0% |
| !!! | TGTTTTGGCTAGCATATATA+AGG | - | chr3_1:49807954-49807973 | Msa0360480:intron | 30.0% |
| !! | GGTTTGTTAAAATATCCTGT+TGG | - | chr3_1:49808006-49808025 | Msa0360480:intron | 30.0% |
| TTGTTAAAATATCCTGTTGG+TGG | - | chr3_1:49808009-49808028 | Msa0360480:intron | 30.0% | |
| CAAACTTGAACCAAGTAAAA+GGG | + | chr3_1:49808075-49808094 | None:intergenic | 30.0% | |
| !! | CTTTTACTTGGTTCAAGTTT+GGG | - | chr3_1:49808074-49808093 | Msa0360480:intron | 30.0% |
| TCTTCATTATTGACCAATCT+GGG | + | chr3_1:49808132-49808151 | None:intergenic | 30.0% | |
| AAGACCATGTATTATTGAAG+TGG | - | chr3_1:49808148-49808167 | Msa0360480:intron | 30.0% | |
| ! | AATGCCACTTCAATAATACA+TGG | + | chr3_1:49808155-49808174 | None:intergenic | 30.0% |
| ! | CTTTGAAAATTGACAATGTG+AGG | - | chr3_1:49808184-49808203 | Msa0360480:intron | 30.0% |
| TTATCAGCGTATCTAACATA+AGG | + | chr3_1:49808249-49808268 | None:intergenic | 30.0% | |
| ! | TTTGCCGTTTATGAAAGATT+CGG | - | chr3_1:49808302-49808321 | Msa0360480:intron | 30.0% |
| TATAATCTAGACACATAACC+AGG | + | chr3_1:49808450-49808469 | None:intergenic | 30.0% | |
| ! | ATCATCACTAGATTTTCCAA+TGG | + | chr3_1:49808712-49808731 | None:intergenic | 30.0% |
| TGATCGTTCAAAAACTAACA+AGG | - | chr3_1:49808728-49808747 | Msa0360480:intron | 30.0% | |
| GATCGTTCAAAAACTAACAA+GGG | - | chr3_1:49808729-49808748 | Msa0360480:intron | 30.0% | |
| AGTTTAGGAACAAAATCAGA+AGG | + | chr3_1:49808774-49808793 | None:intergenic | 30.0% | |
| ! | GATTTTGTTCCTAAACTTGT+TGG | - | chr3_1:49808777-49808796 | Msa0360480:intron | 30.0% |
| ! | TGATGGTTTAAAATCTAGCA+AGG | - | chr3_1:49808830-49808849 | Msa0360480:intron | 30.0% |
| ! | GATGGTTTAAAATCTAGCAA+GGG | - | chr3_1:49808831-49808850 | Msa0360480:intron | 30.0% |
| !! | GTTGATAATGTTGTTCAAGA+TGG | - | chr3_1:49808864-49808883 | Msa0360480:intron | 30.0% |
| TTCATACCATCTTGAACAAA+AGG | + | chr3_1:49808948-49808967 | None:intergenic | 30.0% | |
| TTCAAGATGGTATGAAAGTT+GGG | - | chr3_1:49808952-49808971 | Msa0360480:intron | 30.0% | |
| AGTTTAGGAATTGAAGCAAA+AGG | + | chr3_1:49809002-49809021 | None:intergenic | 30.0% | |
| CAATCCTCAAAAGATATCAA+AGG | + | chr3_1:49809134-49809153 | None:intergenic | 30.0% | |
| AATGATGTCAATGACATCAA+TGG | - | chr3_1:49809314-49809333 | Msa0360480:intron | 30.0% | |
| ATGATGTCAATGACATCAAT+GGG | - | chr3_1:49809315-49809334 | Msa0360480:intron | 30.0% | |
| ATTTCCATGTCTAGTGTAAA+GGG | + | chr3_1:49809353-49809372 | None:intergenic | 30.0% | |
| AATTTCCATGTCTAGTGTAA+AGG | + | chr3_1:49809354-49809373 | None:intergenic | 30.0% | |
| TGGAAATTGATCTTGAAAAC+AGG | - | chr3_1:49809366-49809385 | Msa0360480:intron | 30.0% | |
| AAGCTTAAAGAAGCAAGATT+TGG | - | chr3_1:49809416-49809435 | Msa0360480:intron | 30.0% | |
| CAATTGAAAGCTACTATCAT+AGG | + | chr3_1:49809514-49809533 | None:intergenic | 30.0% | |
| ! | GTACTAGTCGATTTATATGA+AGG | - | chr3_1:49809543-49809562 | Msa0360480:intron | 30.0% |
| TAGGGTTATATTGTAGATCA+CGG | - | chr3_1:49809575-49809594 | Msa0360480:intron | 30.0% | |
| ATAATAGCTATTGTAGCCTA+TGG | + | chr3_1:49809814-49809833 | None:intergenic | 30.0% | |
| GCTACAATAGCTATTATATC+CGG | - | chr3_1:49809817-49809836 | Msa0360480:intron | 30.0% | |
| TAGAACAGCATAATCATTAG+TGG | + | chr3_1:49809914-49809933 | None:intergenic | 30.0% | |
| ! | CACAACATTTTGTACTAGAT+AGG | - | chr3_1:49810034-49810053 | Msa0360480:intron | 30.0% |
| ! | TTGTACTAGATAGGGTATTA+TGG | - | chr3_1:49810043-49810062 | Msa0360480:intron | 30.0% |
| ! | TTTTCGCTATTTAACAAGAG+CGG | - | chr3_1:49810086-49810105 | Msa0360480:intron | 30.0% |
| TGTCTGACTCATCAATAATT+TGG | - | chr3_1:49810196-49810215 | Msa0360480:CDS | 30.0% | |
| TCAATGCTATATATGCTGAT+TGG | - | chr3_1:49810622-49810641 | Msa0360480:CDS | 30.0% | |
| TCATGTTTCCAAAGAACAAG+AGG | - | chr3_1:49804206-49804225 | Msa0360480:CDS | 35.0% | |
| CATGTTTCCAAAGAACAAGA+GGG | - | chr3_1:49804207-49804226 | Msa0360480:CDS | 35.0% | |
| ! | GTTTCTTTGTTTGATGGAAG+AGG | + | chr3_1:49804274-49804293 | None:intergenic | 35.0% |
| CTTCCATCAAACAAAGAAAC+AGG | - | chr3_1:49804274-49804293 | Msa0360480:CDS | 35.0% | |
| CTCGTATTTGTCATAAGTTC+AGG | - | chr3_1:49804314-49804333 | Msa0360480:CDS | 35.0% | |
| TAGGTACAATGTTCACCTTT+CGG | + | chr3_1:49804352-49804371 | None:intergenic | 35.0% | |
| CAAGAAATACTACAATGGTG+AGG | - | chr3_1:49804498-49804517 | Msa0360480:intron | 35.0% | |
| ATAGACTTAGGGATGATTCT+TGG | - | chr3_1:49804554-49804573 | Msa0360480:intron | 35.0% | |
| TGATTCTTGGAAATCAAGAG+AGG | - | chr3_1:49804567-49804586 | Msa0360480:intron | 35.0% | |
| !! | GATGGTTCTAATAGTTTGGA+AGG | - | chr3_1:49804619-49804638 | Msa0360480:intron | 35.0% |
| TATGATCAACTACCTTAGGA+GGG | + | chr3_1:49804978-49804997 | None:intergenic | 35.0% | |
| ATATGATCAACTACCTTAGG+AGG | + | chr3_1:49804979-49804998 | None:intergenic | 35.0% | |
| AAAAATCTGGCATACAAGCA+TGG | + | chr3_1:49805211-49805230 | None:intergenic | 35.0% | |
| ! | ATGCTTGTATGCCAGATTTT+TGG | - | chr3_1:49805210-49805229 | Msa0360480:intron | 35.0% |
| TGTTATCATGAGTGAAAGGA+AGG | + | chr3_1:49805249-49805268 | None:intergenic | 35.0% | |
| TGACAACAGTATGTAAACCT+CGG | + | chr3_1:49805281-49805300 | None:intergenic | 35.0% | |
| AAAAACCAAGAGGAGAAACA+GGG | + | chr3_1:49805502-49805521 | None:intergenic | 35.0% | |
| AATCATCAGCAAAAACCAAG+AGG | + | chr3_1:49805512-49805531 | None:intergenic | 35.0% | |
| ACCAAATGTCTTACCAGTTT+CGG | - | chr3_1:49805809-49805828 | Msa0360480:intron | 35.0% | |
| ! | AAGAGCACAAAATTCAACTC+AGG | + | chr3_1:49806009-49806028 | None:intergenic | 35.0% |
| !! | TGAGTTGAATTTTGTGCTCT+TGG | - | chr3_1:49806008-49806027 | Msa0360480:intron | 35.0% |
| GAAACTCACTTCATTGGATA+AGG | - | chr3_1:49806030-49806049 | Msa0360480:intron | 35.0% | |
| ! | AGAAACTTTTTGTGGGATTC+TGG | - | chr3_1:49806134-49806153 | Msa0360480:intron | 35.0% |
| ! | GAAACTTTTTGTGGGATTCT+GGG | - | chr3_1:49806135-49806154 | Msa0360480:intron | 35.0% |
| ACTACATTAGCATTACTCTG+AGG | - | chr3_1:49806555-49806574 | Msa0360480:intron | 35.0% | |
| CATTTAAGGAGTCCTTGTTA+GGG | + | chr3_1:49806657-49806676 | None:intergenic | 35.0% | |
| AAATAAGTGATGTGTCACGT+GGG | + | chr3_1:49806683-49806702 | None:intergenic | 35.0% | |
| TAAATAAGTGATGTGTCACG+TGG | + | chr3_1:49806684-49806703 | None:intergenic | 35.0% | |
| GGAGTTATTGAGTCCTTAAT+AGG | + | chr3_1:49806726-49806745 | None:intergenic | 35.0% | |
| TAAGGACTCAATAACTCCAA+TGG | - | chr3_1:49806728-49806747 | Msa0360480:intron | 35.0% | |
| ! | CTCAATTTTTCTTCCTCCAA+TGG | - | chr3_1:49807035-49807054 | Msa0360480:intron | 35.0% |
| ! | AATTTTTCTTCCTCCAATGG+AGG | - | chr3_1:49807038-49807057 | Msa0360480:intron | 35.0% |
| ! | ATTTTTCTTCCTCCAATGGA+GGG | - | chr3_1:49807039-49807058 | Msa0360480:intron | 35.0% |
| AGCTTCCTTCATTTCAAAGA+TGG | + | chr3_1:49807236-49807255 | None:intergenic | 35.0% | |
| ATCATTTCACCTTCTACTCA+TGG | - | chr3_1:49807259-49807278 | Msa0360480:intron | 35.0% | |
| !!! | TTCACCTGTTTTTATTCCAG+AGG | - | chr3_1:49807369-49807388 | Msa0360480:intron | 35.0% |
| !!! | TCACCTGTTTTTATTCCAGA+GGG | - | chr3_1:49807370-49807389 | Msa0360480:intron | 35.0% |
| ! | AGTTAACCCATTTTGTGTGT+GGG | + | chr3_1:49807432-49807451 | None:intergenic | 35.0% |
| !! | ACACACAAAATGGGTTAACT+GGG | - | chr3_1:49807432-49807451 | Msa0360480:intron | 35.0% |
| GAATCAGTTTGGAAGAAAGT+TGG | - | chr3_1:49807478-49807497 | Msa0360480:intron | 35.0% | |
| ! | TATTTGGGGTTGTTCAGAAA+TGG | - | chr3_1:49807557-49807576 | Msa0360480:intron | 35.0% |
| TTCACCAAAGGAAAACACAA+AGG | + | chr3_1:49807599-49807618 | None:intergenic | 35.0% | |
| !!! | TTTGGAGGATGTTGTTGTTT+TGG | - | chr3_1:49807630-49807649 | Msa0360480:intron | 35.0% |
| !!! | TTGGAGGATGTTGTTGTTTT+GGG | - | chr3_1:49807631-49807650 | Msa0360480:intron | 35.0% |
| AGATTAGGAAATGAAAGAGG+TGG | - | chr3_1:49807696-49807715 | Msa0360480:intron | 35.0% | |
| AAGTGGATGGATACTTTCAT+TGG | - | chr3_1:49807784-49807803 | Msa0360480:intron | 35.0% | |
| CTAGCAAGATGAATAGCAAT+AGG | + | chr3_1:49807907-49807926 | None:intergenic | 35.0% | |
| ! | ATTGCTATTCATCTTGCTAG+AGG | - | chr3_1:49807907-49807926 | Msa0360480:intron | 35.0% |
| ! | TTGCTATTCATCTTGCTAGA+GGG | - | chr3_1:49807908-49807927 | Msa0360480:intron | 35.0% |
| ATATATGCTAGCCAAAACAG+CGG | + | chr3_1:49807953-49807972 | None:intergenic | 35.0% | |
| ! | TGTTCAATCACCCTTTTACT+TGG | - | chr3_1:49808062-49808081 | Msa0360480:intron | 35.0% |
| CCAAACTTGAACCAAGTAAA+AGG | + | chr3_1:49808076-49808095 | None:intergenic | 35.0% | |
| !! | CCTTTTACTTGGTTCAAGTT+TGG | - | chr3_1:49808073-49808092 | Msa0360480:intron | 35.0% |
| GTCTTCATTATTGACCAATC+TGG | + | chr3_1:49808133-49808152 | None:intergenic | 35.0% | |
| GGCAAACAAATTTCATCCTT+TGG | + | chr3_1:49808288-49808307 | None:intergenic | 35.0% | |
| TCCACCGAATCTTTCATAAA+CGG | + | chr3_1:49808309-49808328 | None:intergenic | 35.0% | |
| TTGAGAGTTTCTGAGCTAAT+TGG | - | chr3_1:49808357-49808376 | Msa0360480:intron | 35.0% | |
| ! | GCAATAATTTTCCCAAGCAA+TGG | + | chr3_1:49808484-49808503 | None:intergenic | 35.0% |
| CCAGCCTTAAAAAATCTAGA+TGG | + | chr3_1:49808540-49808559 | None:intergenic | 35.0% | |
| !!! | CCATCTAGATTTTTTAAGGC+TGG | - | chr3_1:49808537-49808556 | Msa0360480:intron | 35.0% |
| TGGTGGAAGAAATCAGTATT+GGG | - | chr3_1:49808582-49808601 | Msa0360480:intron | 35.0% | |
| TCATTCTTAACGAAACCTTG+AGG | + | chr3_1:49808609-49808628 | None:intergenic | 35.0% | |
| TTCAAGATGGTATGAAAGCT+GGG | - | chr3_1:49808877-49808896 | Msa0360480:intron | 35.0% | |
| ! | GATGTTCCTTTTGTTCAAGA+TGG | - | chr3_1:49808939-49808958 | Msa0360480:intron | 35.0% |
| GTTCAAGATGGTATGAAAGT+TGG | - | chr3_1:49808951-49808970 | Msa0360480:intron | 35.0% | |
| TCAAGATGGTATGAAAGTTG+GGG | - | chr3_1:49808953-49808972 | Msa0360480:intron | 35.0% | |
| ! | ATCTTCAACAGAGTTTTCAG+AGG | + | chr3_1:49809039-49809058 | None:intergenic | 35.0% |
| TCTGAAAACTCTGTTGAAGA+TGG | - | chr3_1:49809038-49809057 | Msa0360480:intron | 35.0% | |
| ! | GACTCCTTTGATATCTTTTG+AGG | - | chr3_1:49809127-49809146 | Msa0360480:intron | 35.0% |
| TGAGGATTGTAAGTATGTGT+CGG | - | chr3_1:49809145-49809164 | Msa0360480:intron | 35.0% | |
| !! | TCCTTGTCTAGTTCTGAATT+TGG | - | chr3_1:49809209-49809228 | Msa0360480:intron | 35.0% |
| ACCAAATTCAGAACTAGACA+AGG | + | chr3_1:49809213-49809232 | None:intergenic | 35.0% | |
| AATGTGGATGGTGAAATAAC+TGG | - | chr3_1:49809248-49809267 | Msa0360480:intron | 35.0% | |
| ! | TCTATCATAAAGTGGACTCT+TGG | + | chr3_1:49809294-49809313 | None:intergenic | 35.0% |
| TGATGTCAATGACATCAATG+GGG | - | chr3_1:49809316-49809335 | Msa0360480:intron | 35.0% | |
| ! | AGAAGCAAGATTTGGTCAAA+AGG | - | chr3_1:49809424-49809443 | Msa0360480:intron | 35.0% |
| CATAGGTTGCACAACAAAAA+GGG | + | chr3_1:49809497-49809516 | None:intergenic | 35.0% | |
| TCATAGGTTGCACAACAAAA+AGG | + | chr3_1:49809498-49809517 | None:intergenic | 35.0% | |
| ! | GACTTGCTTATAGTTAAAGC+TGG | - | chr3_1:49809632-49809651 | Msa0360480:intron | 35.0% |
| TGAGTAATCATACAGACAAG+TGG | + | chr3_1:49805065-49805084 | None:intergenic | 35.0% | |
| TTGTTAAATTGTCGCCATAG+CGG | - | chr3_1:49809757-49809776 | Msa0360480:intron | 35.0% | |
| ACAGCATAATCATTAGTGGA+AGG | + | chr3_1:49809910-49809929 | None:intergenic | 35.0% | |
| TGATTATGCTGTTCTATCTG+AGG | - | chr3_1:49809918-49809937 | Msa0360480:intron | 35.0% | |
| TGTTGTCAATTGTAGATCGT+GGG | - | chr3_1:49809950-49809969 | Msa0360480:intron | 35.0% | |
| AAAAACCAAGAGGAGAAACA+GGG | + | chr3_1:49805502-49805521 | None:intergenic | 35.0% | |
| AATCATCAGCAAAAACCAAG+AGG | + | chr3_1:49805512-49805531 | None:intergenic | 35.0% | |
| CTGACTCATCAATAATTTGG+AGG | - | chr3_1:49810199-49810218 | Msa0360480:CDS | 35.0% | |
| !!! | CATCGCAAGGTTTTAAATTG+TGG | - | chr3_1:49810231-49810250 | Msa0360480:CDS | 35.0% |
| AAGAGTCAGAAGAAGATACA+AGG | + | chr3_1:49810467-49810486 | None:intergenic | 35.0% | |
| TGTATCTTCTTCTGACTCTT+AGG | - | chr3_1:49810467-49810486 | Msa0360480:CDS | 35.0% | |
| !! | CTAAGAAGAAGCGTTTACTT+TGG | - | chr3_1:49810580-49810599 | Msa0360480:CDS | 35.0% |
| TTGGAAACATGATATCGCTG+TGG | + | chr3_1:49804198-49804217 | None:intergenic | 40.0% | |
| ATTCTTGCCCTCTTGTTCTT+TGG | + | chr3_1:49804217-49804236 | None:intergenic | 40.0% | |
| ! | TCGCCTGTTTCTTTGTTTGA+TGG | + | chr3_1:49804280-49804299 | None:intergenic | 40.0% |
| ! | AGGTTTGGTAATTGTCCGAA+AGG | - | chr3_1:49804334-49804353 | Msa0360480:CDS | 40.0% |
| GAACATTGTACCTATGCTCA+CGG | - | chr3_1:49804358-49804377 | Msa0360480:intron | 40.0% | |
| AACATTGTACCTATGCTCAC+GGG | - | chr3_1:49804359-49804378 | Msa0360480:intron | 40.0% | |
| AATGGTGAGGAATGTCCTTA+TGG | - | chr3_1:49804511-49804530 | Msa0360480:intron | 40.0% | |
| !! | GCCTTAAGCATTGGAAGTAT+CGG | - | chr3_1:49804595-49804614 | Msa0360480:intron | 40.0% |
| TCCGATACTTCCAATGCTTA+AGG | + | chr3_1:49804599-49804618 | None:intergenic | 40.0% | |
| !! | CGGAGATGGTTCTAATAGTT+TGG | - | chr3_1:49804615-49804634 | Msa0360480:intron | 40.0% |
| CTAATAGTTTGGAAGGCAAC+AGG | - | chr3_1:49804626-49804645 | Msa0360480:intron | 40.0% | |
| ATGATCAACTACCTTAGGAG+GGG | + | chr3_1:49804977-49804996 | None:intergenic | 40.0% | |
| GCAGTGTTATCATGAGTGAA+AGG | + | chr3_1:49805253-49805272 | None:intergenic | 40.0% | |
| CTGTTGTCAATTGTAGATCG+CGG | - | chr3_1:49805292-49805311 | Msa0360480:intron | 40.0% | |
| GCTATAGAATTGTTGTGCAG+CGG | + | chr3_1:49805340-49805359 | None:intergenic | 40.0% | |
| GCTGCACAACAATTCTATAG+CGG | - | chr3_1:49805339-49805358 | Msa0360480:intron | 40.0% | |
| CAAAAACCAAGAGGAGAAAC+AGG | + | chr3_1:49805503-49805522 | None:intergenic | 40.0% | |
| TAACGTTTAAGCCACAATCG+TGG | - | chr3_1:49805645-49805664 | Msa0360480:intron | 40.0% | |
| CTAAGACGAAGCCTTTACTT+TGG | - | chr3_1:49805892-49805911 | Msa0360480:intron | 40.0% | |
| CTCTTGGAAACTCACTTCAT+TGG | - | chr3_1:49806024-49806043 | Msa0360480:intron | 40.0% | |
| GCACATTTGTCAGTTTGTAG+CGG | - | chr3_1:49806095-49806114 | Msa0360480:intron | 40.0% | |
| !! | AGTTTGTAGCGGTGTTTTGA+TGG | - | chr3_1:49806106-49806125 | Msa0360480:intron | 40.0% |
| ! | CTCGTCTAAGACTTGAACTT+TGG | + | chr3_1:49806194-49806213 | None:intergenic | 40.0% |
| ! | ACTTCTTAGAGCATCCACAA+TGG | - | chr3_1:49806626-49806645 | Msa0360480:intron | 40.0% |
| TTGTTAGGGAACTACCATTG+TGG | + | chr3_1:49806643-49806662 | None:intergenic | 40.0% | |
| ACAATGGTAGTTCCCTAACA+AGG | - | chr3_1:49806642-49806661 | Msa0360480:intron | 40.0% | |
| CCATTTAAGGAGTCCTTGTT+AGG | + | chr3_1:49806658-49806677 | None:intergenic | 40.0% | |
| CCTAACAAGGACTCCTTAAA+TGG | - | chr3_1:49806655-49806674 | Msa0360480:intron | 40.0% | |
| AATAAGTGATGTGTCACGTG+GGG | + | chr3_1:49806682-49806701 | None:intergenic | 40.0% | |
| AAGGAACGGGCAACTATATA+AGG | + | chr3_1:49807007-49807026 | None:intergenic | 40.0% | |
| TATAGTTGCCCGTTCCTTAA+CGG | - | chr3_1:49807009-49807028 | Msa0360480:intron | 40.0% | |
| GAAAAATTGAGTCCCCGTTA+AGG | + | chr3_1:49807026-49807045 | None:intergenic | 40.0% | |
| !! | TATCCAAGAGCATCTCCAAT+GGG | + | chr3_1:49807102-49807121 | None:intergenic | 40.0% |
| !! | TTATCCAAGAGCATCTCCAA+TGG | + | chr3_1:49807103-49807122 | None:intergenic | 40.0% |
| ATTTCACCTTCTACTCATGG+TGG | - | chr3_1:49807262-49807281 | Msa0360480:intron | 40.0% | |
| TGAGTGGAAGTTGTAGCAAT+GGG | + | chr3_1:49807325-49807344 | None:intergenic | 40.0% | |
| ATGAGTGGAAGTTGTAGCAA+TGG | + | chr3_1:49807326-49807345 | None:intergenic | 40.0% | |
| ATTGAAGGTAAGCTGATGAG+TGG | + | chr3_1:49807341-49807360 | None:intergenic | 40.0% | |
| !! | AGGTGAAGAAGATGGATTGA+AGG | + | chr3_1:49807356-49807375 | None:intergenic | 40.0% |
| !! | CATCCCTCTGGAATAAAAAC+AGG | + | chr3_1:49807376-49807395 | None:intergenic | 40.0% |
| !!! | CTGTTTTTATTCCAGAGGGA+TGG | - | chr3_1:49807374-49807393 | Msa0360480:intron | 40.0% |
| ! | CAGTTAACCCATTTTGTGTG+TGG | + | chr3_1:49807433-49807452 | None:intergenic | 40.0% |
| !! | CACACACAAAATGGGTTAAC+TGG | - | chr3_1:49807431-49807450 | Msa0360480:intron | 40.0% |
| AGTGATAGTTGCTTCACCAA+AGG | + | chr3_1:49807611-49807630 | None:intergenic | 40.0% | |
| TGGTGAAGCAACTATCACTT+TGG | - | chr3_1:49807612-49807631 | Msa0360480:intron | 40.0% | |
| TGAAGCAACTATCACTTTGG+AGG | - | chr3_1:49807615-49807634 | Msa0360480:intron | 40.0% | |
| GCTCATCAACATCGAAGAAA+AGG | - | chr3_1:49807726-49807745 | Msa0360480:intron | 40.0% | |
| AGTATCCATCCACTTTGATG+TGG | + | chr3_1:49807779-49807798 | None:intergenic | 40.0% | |
| TAGAGGGATTCCTATTGCTT+TGG | - | chr3_1:49807924-49807943 | Msa0360480:intron | 40.0% | |
| TATATGCTAGCCAAAACAGC+GGG | + | chr3_1:49807952-49807971 | None:intergenic | 40.0% | |
| TTATTGACCAATCTGGGTTG+TGG | + | chr3_1:49808126-49808145 | None:intergenic | 40.0% | |
| GTTAGATACGCTGATAAGTG+TGG | - | chr3_1:49808252-49808271 | Msa0360480:intron | 40.0% | |
| !! | GTGTGGAGTGTTTTATCCAA+AGG | - | chr3_1:49808269-49808288 | Msa0360480:intron | 40.0% |
| AGTTGCTATGCAGTTTGGAA+TGG | - | chr3_1:49808413-49808432 | Msa0360480:intron | 40.0% | |
| !! | TTACCACTTGTTATGCGAAG+TGG | - | chr3_1:49808562-49808581 | Msa0360480:intron | 40.0% |
| ! | GTGGTGGAAGAAATCAGTAT+TGG | - | chr3_1:49808581-49808600 | Msa0360480:intron | 40.0% |
| ! | AAATCAGTATTGGGTCCTCA+AGG | - | chr3_1:49808591-49808610 | Msa0360480:intron | 40.0% |
| AGTTTAGGAATCTCAGCATG+AGG | + | chr3_1:49808672-49808691 | None:intergenic | 40.0% | |
| GCTGAGATTCCTAAACTTGT+TGG | - | chr3_1:49808675-49808694 | Msa0360480:intron | 40.0% | |
| ATAGTGCAGCCAACAAGTTT+AGG | + | chr3_1:49808687-49808706 | None:intergenic | 40.0% | |
| ATCGCAAAATCTAGCGATGA+TGG | - | chr3_1:49808813-49808832 | Msa0360480:intron | 40.0% | |
| ! | GGTTTAAAATCTAGCAAGGG+TGG | - | chr3_1:49808834-49808853 | Msa0360480:intron | 40.0% |
| GTTCAAGATGGTATGAAAGC+TGG | - | chr3_1:49808876-49808895 | Msa0360480:intron | 40.0% | |
| TCAAGATGGTATGAAAGCTG+GGG | - | chr3_1:49808878-49808897 | Msa0360480:intron | 40.0% | |
| CAAGATGGTATGAAAGTTGG+GGG | - | chr3_1:49808954-49808973 | Msa0360480:intron | 40.0% | |
| !! | GTCAGAGTGTTATCTTTTGG+AGG | + | chr3_1:49809110-49809129 | None:intergenic | 40.0% |
| !! | GGAGTCAGAGTGTTATCTTT+TGG | + | chr3_1:49809113-49809132 | None:intergenic | 40.0% |
| GATGGTGAAATAACTGGATG+TGG | - | chr3_1:49809254-49809273 | Msa0360480:intron | 40.0% | |
| GATTGAGAAGCTTGAAAGAG+TGG | - | chr3_1:49809388-49809407 | Msa0360480:intron | 40.0% | |
| !! | GCTGGTTCTGAATAAGCATT+TGG | - | chr3_1:49809650-49809669 | Msa0360480:intron | 40.0% |
| CATACAGACAAGTGGTTCAT+TGG | + | chr3_1:49809713-49809732 | None:intergenic | 40.0% | |
| ATAGCTATTGTAGCCTATGG+TGG | + | chr3_1:49809811-49809830 | None:intergenic | 40.0% | |
| AAGCATGGAATTGTGGTCTA+TGG | + | chr3_1:49809853-49809872 | None:intergenic | 40.0% | |
| AAAACTCTGGCATACAAGCA+TGG | + | chr3_1:49809868-49809887 | None:intergenic | 40.0% | |
| ! | ATGCTTGTATGCCAGAGTTT+TGG | - | chr3_1:49809867-49809886 | Msa0360480:intron | 40.0% |
| CATAATCATTAGTGGAAGGC+AGG | + | chr3_1:49809906-49809925 | None:intergenic | 40.0% | |
| GTGTTGTCAATTGTAGATCG+TGG | - | chr3_1:49809949-49809968 | Msa0360480:intron | 40.0% | |
| ACTGCGCAACAATTGTATAG+CGG | - | chr3_1:49809996-49810015 | Msa0360480:intron | 40.0% | |
| CAAAAACCAAGAGGAGAAAC+AGG | + | chr3_1:49805503-49805522 | None:intergenic | 40.0% | |
| TAATGCAACTGCAGTTGTGA+TGG | - | chr3_1:49810291-49810310 | Msa0360480:intron | 40.0% | |
| GCAGAAACTGGTAAGACATT+TGG | + | chr3_1:49810501-49810520 | None:intergenic | 40.0% | |
| AGTAAACGCTTCTTCTTAGC+CGG | + | chr3_1:49810579-49810598 | None:intergenic | 40.0% | |
| GAAACATGATATCGCTGTGG+TGG | + | chr3_1:49804195-49804214 | None:intergenic | 45.0% | |
| ACATTGTACCTATGCTCACG+GGG | - | chr3_1:49804360-49804379 | Msa0360480:intron | 45.0% | |
| TAAGGAAGCCATTGCCGAAT+TGG | - | chr3_1:49804392-49804411 | Msa0360480:intron | 45.0% | |
| ACTTCCAATGCTTAAGGCAC+AGG | + | chr3_1:49804593-49804612 | None:intergenic | 45.0% | |
| !! | AGCATTGGAAGTATCGGAGA+TGG | - | chr3_1:49804601-49804620 | Msa0360480:intron | 45.0% |
| GTCTGTGAACAAGCCATCAA+GGG | - | chr3_1:49804648-49804667 | Msa0360480:intron | 45.0% | |
| TCTGTGAACAAGCCATCAAG+GGG | - | chr3_1:49804649-49804668 | Msa0360480:intron | 45.0% | |
| TGGGACACAGCTTAATCTTC+CGG | + | chr3_1:49804681-49804700 | None:intergenic | 45.0% | |
| TAGTGAAAGTCGTCCCCAAA+GGG | + | chr3_1:49804727-49804746 | None:intergenic | 45.0% | |
| ATAGTGAAAGTCGTCCCCAA+AGG | + | chr3_1:49804728-49804747 | None:intergenic | 45.0% | |
| GACGACTTTCACTATGCTCA+CGG | - | chr3_1:49804733-49804752 | Msa0360480:intron | 45.0% | |
| ACATAAACTTGCCCCTCCTA+AGG | - | chr3_1:49804963-49804982 | Msa0360480:intron | 45.0% | |
| AACATAGCCACTGTAGCCTA+TGG | + | chr3_1:49805158-49805177 | None:intergenic | 45.0% | |
| ! | ATCCAGCATGTTTCTGCCAT+AGG | - | chr3_1:49805178-49805197 | Msa0360480:intron | 45.0% |
| ATGGCAGCTAGCCAAAAATC+TGG | + | chr3_1:49805224-49805243 | None:intergenic | 45.0% | |
| CATGAGTGAAAGGAAGGCTA+TGG | + | chr3_1:49805243-49805262 | None:intergenic | 45.0% | |
| TGATAACACTGCTCTATCCG+AGG | - | chr3_1:49805261-49805280 | Msa0360480:intron | 45.0% | |
| ATGCACAACTGCAGTTGTGA+TGG | - | chr3_1:49805604-49805623 | Msa0360480:intron | 45.0% | |
| AACGTTTGCAACCACGATTG+TGG | + | chr3_1:49805659-49805678 | None:intergenic | 45.0% | |
| GCCGAAACTGGTAAGACATT+TGG | + | chr3_1:49805813-49805832 | None:intergenic | 45.0% | |
| GTTGCATCATTAGCCGAAAC+TGG | + | chr3_1:49805825-49805844 | None:intergenic | 45.0% | |
| ! | TTGCCACACCTAGACTTGTT+GGG | + | chr3_1:49805857-49805876 | None:intergenic | 45.0% |
| TTTGCCACACCTAGACTTGT+TGG | + | chr3_1:49805858-49805877 | None:intergenic | 45.0% | |
| AACAAGTCTAGGTGTGGCAA+AGG | - | chr3_1:49805857-49805876 | Msa0360480:intron | 45.0% | |
| AGACGAAGCCTTTACTTTGG+TGG | - | chr3_1:49805895-49805914 | Msa0360480:intron | 45.0% | |
| ! | GGCTAGTTGGGTAGAATAAG+AGG | + | chr3_1:49805972-49805991 | None:intergenic | 45.0% |
| ! | TTTTTGTGGGATTCTGGGCT+GGG | - | chr3_1:49806140-49806159 | Msa0360480:intron | 45.0% |
| TCTCTCTCCTGGGTAACTAA+CGG | + | chr3_1:49806980-49806999 | None:intergenic | 45.0% | |
| ATAAGGACTCTCTCTCTCCT+GGG | + | chr3_1:49806990-49807009 | None:intergenic | 45.0% | |
| TATAAGGACTCTCTCTCTCC+TGG | + | chr3_1:49806991-49807010 | None:intergenic | 45.0% | |
| ATAGTTGCCCGTTCCTTAAC+GGG | - | chr3_1:49807010-49807029 | Msa0360480:intron | 45.0% | |
| ATTGAGTCCCCGTTAAGGAA+CGG | + | chr3_1:49807021-49807040 | None:intergenic | 45.0% | |
| GGAGTGGTCCTTGTTAAGTA+AGG | - | chr3_1:49807072-49807091 | Msa0360480:intron | 45.0% | |
| !! | ATCCAAGAGCATCTCCAATG+GGG | + | chr3_1:49807101-49807120 | None:intergenic | 45.0% |
| ! | ATTTTGAATGGCCATCCCTC+TGG | + | chr3_1:49807388-49807407 | None:intergenic | 45.0% |
| GAGCTACCCACACACAAAAT+GGG | - | chr3_1:49807423-49807442 | Msa0360480:intron | 45.0% | |
| !!! | GAGGATGTTGTTGTTTTGGG+AGG | - | chr3_1:49807634-49807653 | Msa0360480:intron | 45.0% |
| TTGGGAGGTTACTCTCTCTA+TGG | - | chr3_1:49807649-49807668 | Msa0360480:intron | 45.0% | |
| TCAACATCGAAGAAAAGGCG+AGG | - | chr3_1:49807731-49807750 | Msa0360480:intron | 45.0% | |
| CATCCACTTTGATGTGGTAG+GGG | + | chr3_1:49807773-49807792 | None:intergenic | 45.0% | |
| CCATCCACTTTGATGTGGTA+GGG | + | chr3_1:49807774-49807793 | None:intergenic | 45.0% | |
| TCCATCCACTTTGATGTGGT+AGG | + | chr3_1:49807775-49807794 | None:intergenic | 45.0% | |
| GGAAATCTACAACCACCAAC+AGG | + | chr3_1:49808024-49808043 | None:intergenic | 45.0% | |
| TGGTGGTTGTAGATTTCCCT+CGG | - | chr3_1:49808026-49808045 | Msa0360480:intron | 45.0% | |
| ! | TTGTAGATTTCCCTCGGTGT+TGG | - | chr3_1:49808032-49808051 | Msa0360480:intron | 45.0% |
| ACATTAACCTCCAACACCGA+GGG | + | chr3_1:49808045-49808064 | None:intergenic | 45.0% | |
| AACATTAACCTCCAACACCG+AGG | + | chr3_1:49808046-49808065 | None:intergenic | 45.0% | |
| ! | ACTTGGTTCAAGTTTGGGTG+TGG | - | chr3_1:49808079-49808098 | Msa0360480:intron | 45.0% |
| ! | CTTGGTTCAAGTTTGGGTGT+GGG | - | chr3_1:49808080-49808099 | Msa0360480:intron | 45.0% |
| TTTGCAACCACAACCCAGAT+TGG | - | chr3_1:49808116-49808135 | Msa0360480:intron | 45.0% | |
| GCCGTTTATGAAAGATTCGG+TGG | - | chr3_1:49808305-49808324 | Msa0360480:intron | 45.0% | |
| AACTGCATAGCAACTCTGTG+TGG | + | chr3_1:49808408-49808427 | None:intergenic | 45.0% | |
| CACAGAGTTGCTATGCAGTT+TGG | - | chr3_1:49808408-49808427 | Msa0360480:intron | 45.0% | |
| GGAATGGATCAAGATGTTCC+TGG | - | chr3_1:49808429-49808448 | Msa0360480:intron | 45.0% | |
| ATGAGACTACTGCCATTGCT+TGG | - | chr3_1:49808469-49808488 | Msa0360480:intron | 45.0% | |
| TGAGACTACTGCCATTGCTT+GGG | - | chr3_1:49808470-49808489 | Msa0360480:intron | 45.0% | |
| TGAACTTGCAATCCTGTCCT+GGG | + | chr3_1:49808637-49808656 | None:intergenic | 45.0% | |
| ATGAACTTGCAATCCTGTCC+TGG | + | chr3_1:49808638-49808657 | None:intergenic | 45.0% | |
| GTTGGCTGCACTATTACCAT+TGG | - | chr3_1:49808693-49808712 | Msa0360480:intron | 45.0% | |
| CAAGATGGTATGAAAGCTGG+GGG | - | chr3_1:49808879-49808898 | Msa0360480:intron | 45.0% | |
| GGGGAAAAACTGATGCTGAT+GGG | - | chr3_1:49808898-49808917 | Msa0360480:intron | 45.0% | |
| GGGAAAAACTGATGCTGATG+GGG | - | chr3_1:49808899-49808918 | Msa0360480:intron | 45.0% | |
| GGAAAAACTGATGCTGATGG+GGG | - | chr3_1:49808900-49808919 | Msa0360480:intron | 45.0% | |
| TGAGCCCTTTACACTAGACA+TGG | - | chr3_1:49809346-49809365 | Msa0360480:intron | 45.0% | |
| GGCATACAAGCATGGAATTG+TGG | + | chr3_1:49809860-49809879 | None:intergenic | 45.0% | |
| CATTAGTGGAAGGCAGGTTA+CGG | + | chr3_1:49809900-49809919 | None:intergenic | 45.0% | |
| GCTATACAATTGTTGCGCAG+TGG | + | chr3_1:49809997-49810016 | None:intergenic | 45.0% | |
| ! | ATTCACCCTGTTTCTCCTCT+TGG | - | chr3_1:49810147-49810166 | Msa0360480:CDS | 45.0% |
| GAGGTACATTTCTCATCGCA+AGG | - | chr3_1:49810218-49810237 | Msa0360480:CDS | 45.0% | |
| !! | TAACGTTTTAGCCGCAATCG+TGG | - | chr3_1:49810332-49810351 | Msa0360480:CDS | 45.0% |
| AACGTTTGCAACCACGATTG+CGG | + | chr3_1:49805659-49805678 | None:intergenic | 45.0% | |
| TTGCCACACCTAGACTTACT+GGG | + | chr3_1:49810545-49810564 | None:intergenic | 45.0% | |
| TTTGCCACACCTAGACTTAC+TGG | + | chr3_1:49810546-49810565 | None:intergenic | 45.0% | |
| AGTAAGTCTAGGTGTGGCAA+AGG | - | chr3_1:49810545-49810564 | Msa0360480:CDS | 45.0% | |
| ATGATATCGCTGTGGTGGTC+TGG | + | chr3_1:49804190-49804209 | None:intergenic | 50.0% | |
| GAAGCCATTGCCGAATTGGA+AGG | - | chr3_1:49804396-49804415 | Msa0360480:intron | 50.0% | |
| AGCTCCTTCCAATTCGGCAA+TGG | + | chr3_1:49804403-49804422 | None:intergenic | 50.0% | |
| CCAGCTAGCTCCTTCCAATT+CGG | + | chr3_1:49804409-49804428 | None:intergenic | 50.0% | |
| CAAGGAATGGATGCAGTGTC+TGG | - | chr3_1:49804438-49804457 | Msa0360480:intron | 50.0% | |
| GGTCTGTGAACAAGCCATCA+AGG | - | chr3_1:49804647-49804666 | Msa0360480:intron | 50.0% | |
| AGATTAAGCTGTGTCCCACG+TGG | - | chr3_1:49804683-49804702 | Msa0360480:intron | 50.0% | |
| ATAGCCACTGTAGCCTATGG+TGG | + | chr3_1:49805155-49805174 | None:intergenic | 50.0% | |
| ! | TGGCATACAAGCATGGACTG+TGG | + | chr3_1:49805204-49805223 | None:intergenic | 50.0% |
| ! | TTCCACCCTGTTTCTCCTCT+TGG | - | chr3_1:49805494-49805513 | Msa0360480:intron | 50.0% |
| AACCAAGAGGAGAAACAGGG+TGG | + | chr3_1:49805499-49805518 | None:intergenic | 50.0% | |
| CACAACTGCAGTTGTGATGG+TGG | - | chr3_1:49805607-49805626 | Msa0360480:intron | 50.0% | |
| ACCAGCATCCCAACAAGTCT+AGG | - | chr3_1:49805846-49805865 | Msa0360480:intron | 50.0% | |
| !! | ACCTAGACTTGTTGGGATGC+TGG | + | chr3_1:49805850-49805869 | None:intergenic | 50.0% |
| CATCCCAACAAGTCTAGGTG+TGG | - | chr3_1:49805851-49805870 | Msa0360480:intron | 50.0% | |
| TCTAGGTGTGGCAAAGGAAG+TGG | - | chr3_1:49805863-49805882 | Msa0360480:intron | 50.0% | |
| ! | TCCTCTGCACTTGGCTAGTT+GGG | + | chr3_1:49805984-49806003 | None:intergenic | 50.0% |
| ! | CTTTTTGTGGGATTCTGGGC+TGG | - | chr3_1:49806139-49806158 | Msa0360480:intron | 50.0% |
| TGTCACGTGGGGTCCATTTA+AGG | + | chr3_1:49806671-49806690 | None:intergenic | 50.0% | |
| CTCTCTCCTGGGTAACTAAC+GGG | + | chr3_1:49806979-49806998 | None:intergenic | 50.0% | |
| TAGTTGCCCGTTCCTTAACG+GGG | - | chr3_1:49807011-49807030 | Msa0360480:intron | 50.0% | |
| TTGAGTCCCCGTTAAGGAAC+GGG | + | chr3_1:49807020-49807039 | None:intergenic | 50.0% | |
| CTCCAATGGAGGGTCCTTAA+CGG | - | chr3_1:49807049-49807068 | Msa0360480:intron | 50.0% | |
| TCCAATGGAGGGTCCTTAAC+GGG | - | chr3_1:49807050-49807069 | Msa0360480:intron | 50.0% | |
| TGGGGGGTCCTTACTTAACA+AGG | + | chr3_1:49807083-49807102 | None:intergenic | 50.0% | |
| GTTAAGTAAGGACCCCCCAT+TGG | - | chr3_1:49807084-49807103 | Msa0360480:intron | 50.0% | |
| !! | TCCAAGAGCATCTCCAATGG+GGG | + | chr3_1:49807100-49807119 | None:intergenic | 50.0% |
| TCACCTTCTACTCATGGTGG+TGG | - | chr3_1:49807265-49807284 | Msa0360480:intron | 50.0% | |
| TCACCACCACCATGAGTAGA+AGG | + | chr3_1:49807271-49807290 | None:intergenic | 50.0% | |
| GGAGCTACCCACACACAAAA+TGG | - | chr3_1:49807422-49807441 | Msa0360480:intron | 50.0% | |
| TAGCCCCTACCACATCAAAG+TGG | - | chr3_1:49807767-49807786 | Msa0360480:intron | 50.0% | |
| CCCTACCACATCAAAGTGGA+TGG | - | chr3_1:49807771-49807790 | Msa0360480:intron | 50.0% | |
| !! | TAGATTTCCCTCGGTGTTGG+AGG | - | chr3_1:49808035-49808054 | Msa0360480:intron | 50.0% |
| ! | TTCAAGTTTGGGTGTGGGAG+AGG | - | chr3_1:49808085-49808104 | Msa0360480:intron | 50.0% |
| CCACCACTTCGCATAACAAG+TGG | + | chr3_1:49808568-49808587 | None:intergenic | 50.0% | |
| !! | CCACTTGTTATGCGAAGTGG+TGG | - | chr3_1:49808565-49808584 | Msa0360480:intron | 50.0% |
| CGTTAAGAATGATGTGCCCC+AGG | - | chr3_1:49808617-49808636 | Msa0360480:intron | 50.0% | |
| GAACTTGCAATCCTGTCCTG+GGG | + | chr3_1:49808636-49808655 | None:intergenic | 50.0% | |
| ACAGCGCAGCCAACAAGTTT+AGG | + | chr3_1:49808789-49808808 | None:intergenic | 50.0% | |
| GGGGGAAAAACTGATGCTGA+TGG | - | chr3_1:49808897-49808916 | Msa0360480:intron | 50.0% | |
| ACCAAGGCATGGAGGATCTT+GGG | - | chr3_1:49809781-49809800 | Msa0360480:intron | 50.0% | |
| CTATTGTAGCCTATGGTGGC+TGG | + | chr3_1:49809807-49809826 | None:intergenic | 50.0% | |
| GGTCTATGGCAGAAACATGC+CGG | + | chr3_1:49809839-49809858 | None:intergenic | 50.0% | |
| TGCAACTGCAGTTGTGATGG+CGG | - | chr3_1:49810294-49810313 | Msa0360480:intron | 50.0% | |
| GGTGCATCATTGGCAGAAAC+TGG | + | chr3_1:49810513-49810532 | None:intergenic | 50.0% | |
| GATGCTGGTAGGTGCATCAT+TGG | + | chr3_1:49810523-49810542 | None:intergenic | 50.0% | |
| AGACTTACTGGGATGCTGGT+AGG | + | chr3_1:49810534-49810553 | None:intergenic | 50.0% | |
| ACCAGCATCCCAGTAAGTCT+AGG | - | chr3_1:49810534-49810553 | Msa0360480:intron | 50.0% | |
| ACCTAGACTTACTGGGATGC+TGG | + | chr3_1:49810538-49810557 | None:intergenic | 50.0% | |
| CATCCCAGTAAGTCTAGGTG+TGG | - | chr3_1:49810539-49810558 | Msa0360480:CDS | 50.0% | |
| TCTAGGTGTGGCAAAGGAAG+TGG | - | chr3_1:49805863-49805882 | Msa0360480:intron | 50.0% | |
| ! | GGCAAGTTGGGATGAACAAG+AGG | + | chr3_1:49810660-49810679 | None:intergenic | 50.0% |
| TGTACCTATGCTCACGGGGT+TGG | - | chr3_1:49804364-49804383 | Msa0360480:intron | 55.0% | |
| !! | CTCACGGGGTTGGTGAGATA+AGG | - | chr3_1:49804374-49804393 | Msa0360480:intron | 55.0% |
| CCGAATTGGAAGGAGCTAGC+TGG | - | chr3_1:49804406-49804425 | Msa0360480:intron | 55.0% | |
| GAGGCCTGTGCCTTAAGCAT+TGG | - | chr3_1:49804586-49804605 | Msa0360480:intron | 55.0% | |
| !! | AGCCATCAAGGGGCACTTAC+CGG | - | chr3_1:49804659-49804678 | Msa0360480:intron | 55.0% |
| TTCCGGTAAGTGCCCCTTGA+TGG | + | chr3_1:49804664-49804683 | None:intergenic | 55.0% | |
| !! | AAACAGGGCGCTGTCCCTTT+GGG | - | chr3_1:49804710-49804729 | Msa0360480:intron | 55.0% |
| CACTATGCTCACGGAGAAGC+AGG | - | chr3_1:49804742-49804761 | Msa0360480:intron | 55.0% | |
| TTGTCGCCATAACGGCACCA+AGG | - | chr3_1:49805109-49805128 | Msa0360480:intron | 55.0% | |
| !! | TCCATGCCTTGGTGCCGTTA+TGG | + | chr3_1:49805118-49805137 | None:intergenic | 55.0% |
| ATAACGGCACCAAGGCATGG+AGG | - | chr3_1:49805117-49805136 | Msa0360480:intron | 55.0% | |
| GCACAACATCCTCCATGCCT+TGG | + | chr3_1:49805129-49805148 | None:intergenic | 55.0% | |
| GATGTTGTGCCAGCCACCAT+AGG | - | chr3_1:49805139-49805158 | Msa0360480:intron | 55.0% | |
| GGCCTATGGCAGAAACATGC+TGG | + | chr3_1:49805183-49805202 | None:intergenic | 55.0% | |
| ! | CAAGCATGGACTGTGGCCTA+TGG | + | chr3_1:49805197-49805216 | None:intergenic | 55.0% |
| ACCCAACTAGCCAAGTGCAG+AGG | - | chr3_1:49805980-49805999 | Msa0360480:intron | 55.0% | |
| CTCCTCTGCACTTGGCTAGT+TGG | + | chr3_1:49805985-49806004 | None:intergenic | 55.0% | |
| ACTCAGGTCTCCTCTGCACT+TGG | + | chr3_1:49805993-49806012 | None:intergenic | 55.0% | |
| CGTTAAGGACCCTCCATTGG+AGG | + | chr3_1:49807051-49807070 | None:intergenic | 55.0% | |
| CCAATGGAGGGTCCTTAACG+GGG | - | chr3_1:49807051-49807070 | Msa0360480:intron | 55.0% | |
| ACAAGGACCACTCCCCGTTA+AGG | + | chr3_1:49807066-49807085 | None:intergenic | 55.0% | |
| !! | CCAAGAGCATCTCCAATGGG+GGG | + | chr3_1:49807099-49807118 | None:intergenic | 55.0% |
| ACAGCGGGTGCCAAAGCAAT+AGG | + | chr3_1:49807937-49807956 | None:intergenic | 55.0% | |
| ! | TGCTTTGGCACCCGCTGTTT+TGG | - | chr3_1:49807939-49807958 | Msa0360480:intron | 55.0% |
| AGAATGATGTGCCCCAGGAC+AGG | - | chr3_1:49808622-49808641 | Msa0360480:intron | 55.0% | |
| CACCAAGGCATGGAGGATCT+TGG | - | chr3_1:49809780-49809799 | Msa0360480:intron | 55.0% | |
| ACGGCAGCTAGCCAAAACTC+TGG | + | chr3_1:49809881-49809900 | None:intergenic | 55.0% | |
| TGTGGCAAAGGAAGTGGAGC+CGG | - | chr3_1:49805869-49805888 | Msa0360480:intron | 55.0% | |
| CTCACCAACCCCGTGAGCAT+AGG | + | chr3_1:49804371-49804390 | None:intergenic | 60.0% | |
| ! | CTGGCTCTCGCAGCAAGGAA+TGG | - | chr3_1:49804425-49804444 | Msa0360480:intron | 60.0% |
| TGTCCCACGTGGCAGCAAAC+AGG | - | chr3_1:49804694-49804713 | Msa0360480:intron | 60.0% | |
| GTCCCACGTGGCAGCAAACA+GGG | - | chr3_1:49804695-49804714 | Msa0360480:intron | 60.0% | |
| !! | CAAACAGGGCGCTGTCCCTT+TGG | - | chr3_1:49804709-49804728 | Msa0360480:intron | 60.0% |
| !! | AACAGGGCGCTGTCCCTTTG+GGG | - | chr3_1:49804711-49804730 | Msa0360480:intron | 60.0% |
| GCCATAACGGCACCAAGGCA+TGG | - | chr3_1:49805114-49805133 | Msa0360480:intron | 60.0% | |
| CCACTGTAGCCTATGGTGGC+TGG | + | chr3_1:49805151-49805170 | None:intergenic | 60.0% | |
| CCAGCCACCATAGGCTACAG+TGG | - | chr3_1:49805148-49805167 | Msa0360480:intron | 60.0% | |
| ! | TGTGGGATTCTGGGCTGGGT+AGG | - | chr3_1:49806144-49806163 | Msa0360480:intron | 60.0% |
| ! | GTGGGATTCTGGGCTGGGTA+GGG | - | chr3_1:49806145-49806164 | Msa0360480:intron | 60.0% |
| GTGGGACCCGTTAGTTACCC+AGG | - | chr3_1:49806970-49806989 | Msa0360480:intron | 60.0% | |
| CCCCGTTAAGGACCCTCCAT+TGG | + | chr3_1:49807054-49807073 | None:intergenic | 60.0% | |
| CCCCCCATTGGAGATGCTCT+TGG | - | chr3_1:49807096-49807115 | Msa0360480:intron | 60.0% | |
| TTGTCGCCATAGCGGCACCA+AGG | - | chr3_1:49809765-49809784 | Msa0360480:intron | 60.0% | |
| !! | TCCATGCCTTGGTGCCGCTA+TGG | + | chr3_1:49809774-49809793 | None:intergenic | 60.0% |
| ATAGCGGCACCAAGGCATGG+AGG | - | chr3_1:49809773-49809792 | Msa0360480:intron | 60.0% | |
| GCCCAAGATCCTCCATGCCT+TGG | + | chr3_1:49809785-49809804 | None:intergenic | 60.0% | |
| GATCTTGGGCCAGCCACCAT+AGG | - | chr3_1:49809795-49809814 | Msa0360480:intron | 60.0% | |
| ! | GCTAGCTGGCTCTCGCAGCA+AGG | - | chr3_1:49804420-49804439 | Msa0360480:intron | 65.0% |
| ! | CGCCCTGTTTGCTGCCACGT+GGG | + | chr3_1:49804700-49804719 | None:intergenic | 65.0% |
| GGAGGGTCCTTAACGGGGAG+TGG | - | chr3_1:49807056-49807075 | Msa0360480:intron | 65.0% | |
| GCCATAGCGGCACCAAGGCA+TGG | - | chr3_1:49809770-49809789 | Msa0360480:intron | 65.0% | |
| ! | GCGCCCTGTTTGCTGCCACG+TGG | + | chr3_1:49804701-49804720 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 49804178 | 49810689 | 49804178 | ID=Msa0360480;Name=Msa0360480 |
| chr3_1 | mRNA | 49804178 | 49810689 | 49804178 | ID=Msa0360480-mRNA-1;Parent=Msa0360480;Name=Msa0360480-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0.25|0.2|5|0|259 |
| chr3_1 | exon | 49810538 | 49810689 | 49810538 | ID=Msa0360480-mRNA-1:exon:8765;Parent=Msa0360480-mRNA-1 |
| chr3_1 | exon | 49810328 | 49810531 | 49810328 | ID=Msa0360480-mRNA-1:exon:8764;Parent=Msa0360480-mRNA-1 |
| chr3_1 | exon | 49810104 | 49810309 | 49810104 | ID=Msa0360480-mRNA-1:exon:8763;Parent=Msa0360480-mRNA-1 |
| chr3_1 | exon | 49809000 | 49809041 | 49809000 | ID=Msa0360480-mRNA-1:exon:8762;Parent=Msa0360480-mRNA-1 |
| chr3_1 | exon | 49804178 | 49804353 | 49804178 | ID=Msa0360480-mRNA-1:exon:8761;Parent=Msa0360480-mRNA-1 |
| chr3_1 | CDS | 49810538 | 49810689 | 49810538 | ID=Msa0360480-mRNA-1:cds;Parent=Msa0360480-mRNA-1 |
| chr3_1 | CDS | 49810328 | 49810531 | 49810328 | ID=Msa0360480-mRNA-1:cds;Parent=Msa0360480-mRNA-1 |
| chr3_1 | CDS | 49810104 | 49810309 | 49810104 | ID=Msa0360480-mRNA-1:cds;Parent=Msa0360480-mRNA-1 |
| chr3_1 | CDS | 49809000 | 49809041 | 49809000 | ID=Msa0360480-mRNA-1:cds;Parent=Msa0360480-mRNA-1 |
| chr3_1 | CDS | 49804178 | 49804353 | 49804178 | ID=Msa0360480-mRNA-1:cds;Parent=Msa0360480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
