AlfalfaGEDB | Msa0361400

M. sativa cultivar zhongmu-4 / Msa0361400

KEGG: -
GO: -
PFAM: PF18044.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361400	XP_003617880.2	88.751	889	74	6	1	876	11	886	0.0	1513

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361400	sp\|Q9LTS7\|C3H65_ARATH	32.067	421	213	12	330	724	231	604	3.35e-35	147

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361400	G7K4R9	88.751	889	74	6	1	876	11	886	0.0	1513

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TFs/TRs:

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Gene ID	Type	Classification
Msa0361400	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361400	MtrunA17_Chr5g0446991	88.639	889	74	7	1	876	11	885	0.0	1506
Msa0361400	MtrunA17_Chr3g0099651	87.318	891	92	8	1	876	11	895	0.0	1502

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361400	AT5G56930.1	32.067	421	213	12	330	724	231	604	3.40e-36	147

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Find 226 sgRNAs with CRISPR-Local

Find 521 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTAAAACAAACAAT+TGG	0.408977	3_1:-51809032	None:intergenic
AAAACGGGTATCTCCTTTCA+AGG	0.426280	3_1:+51811471	Msa0361400:CDS
AAAAGTTGGTGCTGATGTCA+AGG	0.557812	3_1:+51810552	Msa0361400:CDS
AAACAATGAAAGACAACAAA+AGG	0.454560	3_1:+51811047	Msa0361400:CDS
AAACCAAAATTGACTGACTG+AGG	0.641965	3_1:-51815586	None:intergenic
AAACCATCTGTCTGTGTAGA+CGG	0.571182	3_1:-51810715	None:intergenic
AAACCGTGGAAGGGGAAAGG+TGG	0.548885	3_1:-51809189	None:intergenic
AAACCTCTATCAAAGATCAC+GGG	0.622912	3_1:+51811583	Msa0361400:CDS
AAAGGCACTTCCTAACTTAT+TGG	0.198623	3_1:+51816142	Msa0361400:intron
AACCAAAAGCTAAAGAATGT+TGG	0.539003	3_1:+51813098	Msa0361400:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAAAACAAACAATTGGAGA+AGG	-	chr3_1:51809029-51809048	None:intergenic	30.0%
AAGCAACAACAGTAAGAATA+AGG	-	chr3_1:51809266-51809285	None:intergenic	30.0%
AATTTCTATTAGTAGCCTAG+TGG	-	chr3_1:51809363-51809382	None:intergenic	30.0%
GAAATTGAGAGAGAAAAAGA+AGG	+	chr3_1:51809377-51809396	Msa0361400:intron	30.0%
AAACATAGGCTAAAGTGTAA+CGG	+	chr3_1:51809725-51809744	Msa0361400:intron	30.0%
ACAAAATGTGTTCAAAATGG+CGG	+	chr3_1:51809792-51809811	Msa0361400:intron	30.0%
TACAAGGTTAACACATTGTT+TGG	+	chr3_1:51809954-51809973	Msa0361400:intron	30.0%
ATAATTTGATGTCACAGCTA+AGG	+	chr3_1:51810214-51810233	Msa0361400:intron	30.0%
GCTTTAATTCAAAATCCAAC+AGG	-	chr3_1:51810348-51810367	None:intergenic	30.0%
TTCTTCCTCTTTCAAGATAA+TGG	+	chr3_1:51810475-51810494	Msa0361400:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	51808997	51816885	51808997	ID=Msa0361400;Name=Msa0361400
chr3_1	mRNA	51808997	51816885	51808997	ID=Msa0361400-mRNA-1;Parent=Msa0361400;Name=Msa0361400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=101\|0.63\|0.75\|1\|0.90\|0.83\|12\|255\|953
chr3_1	exon	51808997	51809068	51808997	ID=Msa0361400-mRNA-1:exon:9272;Parent=Msa0361400-mRNA-1
chr3_1	exon	51809089	51809238	51809089	ID=Msa0361400-mRNA-1:exon:9273;Parent=Msa0361400-mRNA-1
chr3_1	exon	51810491	51811623	51810491	ID=Msa0361400-mRNA-1:exon:9274;Parent=Msa0361400-mRNA-1
chr3_1	exon	51812010	51812075	51812010	ID=Msa0361400-mRNA-1:exon:9275;Parent=Msa0361400-mRNA-1
chr3_1	exon	51812747	51812812	51812747	ID=Msa0361400-mRNA-1:exon:9276;Parent=Msa0361400-mRNA-1
chr3_1	exon	51813019	51813147	51813019	ID=Msa0361400-mRNA-1:exon:9277;Parent=Msa0361400-mRNA-1
chr3_1	exon	51814241	51814291	51814241	ID=Msa0361400-mRNA-1:exon:9278;Parent=Msa0361400-mRNA-1
chr3_1	exon	51814686	51814826	51814686	ID=Msa0361400-mRNA-1:exon:9279;Parent=Msa0361400-mRNA-1
chr3_1	exon	51815118	51816035	51815118	ID=Msa0361400-mRNA-1:exon:9280;Parent=Msa0361400-mRNA-1
chr3_1	exon	51816146	51816229	51816146	ID=Msa0361400-mRNA-1:exon:9281;Parent=Msa0361400-mRNA-1
chr3_1	exon	51816406	51816528	51816406	ID=Msa0361400-mRNA-1:exon:9282;Parent=Msa0361400-mRNA-1
chr3_1	exon	51816601	51816885	51816601	ID=Msa0361400-mRNA-1:exon:9283;Parent=Msa0361400-mRNA-1
chr3_1	five_prime_UTR	51808997	51809068	51808997	ID=Msa0361400-mRNA-1:five_prime_utr;Parent=Msa0361400-mRNA-1
chr3_1	five_prime_UTR	51809089	51809117	51809089	ID=Msa0361400-mRNA-1:five_prime_utr;Parent=Msa0361400-mRNA-1
chr3_1	CDS	51809118	51809238	51809118	ID=Msa0361400-mRNA-1:cds;Parent=Msa0361400-mRNA-1
chr3_1	CDS	51810491	51811623	51810491	ID=Msa0361400-mRNA-1:cds;Parent=Msa0361400-mRNA-1
chr3_1	CDS	51812010	51812075	51812010	ID=Msa0361400-mRNA-1:cds;Parent=Msa0361400-mRNA-1
chr3_1	CDS	51812747	51812812	51812747	ID=Msa0361400-mRNA-1:cds;Parent=Msa0361400-mRNA-1
chr3_1	CDS	51813019	51813147	51813019	ID=Msa0361400-mRNA-1:cds;Parent=Msa0361400-mRNA-1
chr3_1	CDS	51814241	51814291	51814241	ID=Msa0361400-mRNA-1:cds;Parent=Msa0361400-mRNA-1
chr3_1	CDS	51814686	51814826	51814686	ID=Msa0361400-mRNA-1:cds;Parent=Msa0361400-mRNA-1
chr3_1	CDS	51815118	51816035	51815118	ID=Msa0361400-mRNA-1:cds;Parent=Msa0361400-mRNA-1
chr3_1	CDS	51816146	51816229	51816146	ID=Msa0361400-mRNA-1:cds;Parent=Msa0361400-mRNA-1
chr3_1	CDS	51816406	51816528	51816406	ID=Msa0361400-mRNA-1:cds;Parent=Msa0361400-mRNA-1
chr3_1	CDS	51816601	51816630	51816601	ID=Msa0361400-mRNA-1:cds;Parent=Msa0361400-mRNA-1
chr3_1	three_prime_UTR	51816631	51816885	51816631	ID=Msa0361400-mRNA-1:three_prime_utr;Parent=Msa0361400-mRNA-1

Gene Sequence

>Msa0361400

ATGCCTTTCCCTCCTTACCGTCGATCTCACTTCCGCAGTCATACTTACACCACCCTTCTCCGTATTCTCACCCACCTTTCCCCTTCCACGGTTTCAACTCAACAACCCCTCGACGTTCCTGATAATGGCAATGTTGGAATGGAGCAAGAAAACCAGGAAAAGGAGCCTGAGAACTTTGAGTTAAAAGTTGGTGCTGATGTCAAGGATCCCAAGGGTCCAATACCCTTGAAGGAAATGCATGATGTCCATGAGACCATTGAAAGTGTTGGAGACAAGGGCAAGGATTTGAGTGCCAATGCTATGGTCCTAGATGATGCAGCAGAATTTCTTATGGGAGTAGATGAACCGTCTACACAGACAGATGGTTTTCATTTGGAACAGATGATAATGGACGAGTTGGAGCTTGTTGTGAAAGGGGCTGAAGATCCTGTTTGTGATGATAGTTTAATCCCCCTGAACTGCGAGAAACAGAATAGCGGTAGTGAAGTTGATTTGATGGATTACCGAGTAGAACATGTTGAACATCTGCGTTCTGGTACAAACACGTCTGAAAGTGTAAGTGAGGTGCAGTCGCAAGTACAAGGAGAGCTTAATCAACTTGACTCGGAAGGCTTTCATGTGTCCGAGTCAACAAAGGGACACGCTTCTGACTCCGTGATTAGTAGTACATCAAGTATAAACAATGAAAGACAACAAAAGGAAACAGAATTGGTAACACTGGTTTGTCCTCTAGCAGGATATCTTCCTACTATTCAAGAGGGTGAATTTGAGAAGGAAGAACAGAGTGGACATAAGGTTGATGAAGCAACTCATAGTTCTTTAGATCTTGATACAAATATTGAAGCATTGAATATGACAGAAGATGGTGGATTACTGGATTCTACAATTATGGAAGATAAATGTGAAACACAAAATGAAGAGAAATCAGAGAAGTTAATTTGTGTGAAAAATACAACAAGTTCTTCCGATATTCTGATTGAAGAAGGAGATTTAGAAGAGGGAGAAATTTCTGGAGATTTTTCAATGGATGGAAACACATTTGATGTGTCTTCTGCGGATGCTATAGTTTCAGAACAGATGAAAAACATGATTTCTCCTTTCAAAACGGGTATCTCCTTTCAAGGCTTTCCATCTAATCTCTTTATGGTAAATGCAATTCAAAATACACCAACTTTAACCAAAAATCAAGTCTTGCACAAAGGATTCATGGAAGAAACCTCTATCAAAGATCACGGGAACTCATCTGTAGTACAGCAGAGTGTTGATGCCAGCAGAAAGGAACAAAGTGGTCCTGATGCTAAGAAGAAGAAAAACAAAAAGCAGATGGTTGATGCCAGTGGGAGCAAGCGTGGTCCTGGTTCTCAGGAGAAGAAAACTAGAAAGAGGAAGAAGTATCGAAAGAACAGAGCAGAAAAGAACAGAGATCTAGGTGTTAAAAGGCCCAAGTTTCAGCCTCCAGAACAAAAACCAAAAGCTAAAGAATGTTGGCATTATATGAAAGGAAGATGCCATGAGGGTGATAACTGCAATTTCTCACATGATGCTATTCCTTCAACAAAGTCCATGCCATGTACTCACCATGCTTGTGGCTCTTGTATGAAAGGGAATGATTGCCCATATGATCATCAGCTCAAGAAGTATCCTTGTTCCAATTTTGTGTCACAAGGCTCCTGTTGTAGAGGTGGTGAATGTAAGTTTTCACACCAGGTGCAAACCAGCCAAGATATACCTACGCCTACAAATGCTTGCAAACCAGAGTTGAAGTCTCCTCTTTCGTCAGGAAATACAAATTTCAGTACACCACTGAATAATCATGGCACTGGTTCTGTCCAACAAAACAACTCCAATTCTAAGAGAATTTATTCTCACACCAATGTAGAACATAAGGTAGACGTTTCACAGACAAAGCCTACCTCAGCACCCAAAGGAATTAGATTTATAAATGTTGCTAACTTATCACCTAGTACACCAAAACAAGACACGGTACAACCAAACAAGGGAAATCTTGTCCACAGTGGAACATGTGCAGATAAAGGTCAAAATACTGCGGAAATTTCTAAAAATATTCCAGCTGTCATGCCCAAGGGAGTCAACTTTCTTTCTTTCGGCAAAGGTTCTGTTTGCAGTTTTAAACGTTCTATTCACTCCACTGCAGAAGGAATGATATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTGTCTGAACATTCAGTTTCACTGCTGAATAAGGATGATAATGGAAAAACCAGTGATAGAACTGCACAAAATTTACCACAAACTGCGCTATTCTCACATGAGATTTCAGACAAAAACCAATCCATGGCAGAACGACTGAAATCAAGATTTTTAGGGAAAGATTCAGCTGATGATTCTGTGAGGGATCACAGCCATTGTAAATCAGTTCAAGAGGTAAATAAGGCATCTGATAATTCTCAGGCTTCAACTGTGACCTCAGCTACGCTTCTTGCTAGTCCCTTTGTTTCACTTCAATCTTCAGAAGGCCTAGTATCCAGATGTCATAAACAAGCATCAAACTTAGGCCAAAGGGCATTCATTTCGACTTTAGCTTTTGCAGCGGAGCATGAATCAAATATTAAGATGAAATGCCCTACTGGTGCTTCACCTGCACTTCCTAACTTATTGGATGATAACCAGGTAGGGGGATGTTTAGTTTATTATGTTTCCATTTCTCTCGCGGTATGGTTGCAGGTAATGCACTCATGCTGTGTTCTTTATGACAACAAATTTGCAAAGGTGGATTTCTCCATCTACCTGTCAGTCACTTACACAAGCAATATTCTTGCTTCTGGAAATGACTTGAGTTTTGAAGTGGTAACTTTGAGCAAATTGGCTGTCTTTTAA

Protein sequence

>Msa0361400

MPFPPYRRSHFRSHTYTTLLRILTHLSPSTVSTQQPLDVPDNGNVGMEQENQEKEPENFELKVGADVKDPKGPIPLKEMHDVHETIESVGDKGKDLSANAMVLDDAAEFLMGVDEPSTQTDGFHLEQMIMDELELVVKGAEDPVCDDSLIPLNCEKQNSGSEVDLMDYRVEHVEHLRSGTNTSESVSEVQSQVQGELNQLDSEGFHVSESTKGHASDSVISSTSSINNERQQKETELVTLVCPLAGYLPTIQEGEFEKEEQSGHKVDEATHSSLDLDTNIEALNMTEDGGLLDSTIMEDKCETQNEEKSEKLICVKNTTSSSDILIEEGDLEEGEISGDFSMDGNTFDVSSADAIVSEQMKNMISPFKTGISFQGFPSNLFMVNAIQNTPTLTKNQVLHKGFMEETSIKDHGNSSVVQQSVDASRKEQSGPDAKKKKNKKQMVDASGSKRGPGSQEKKTRKRKKYRKNRAEKNRDLGVKRPKFQPPEQKPKAKECWHYMKGRCHEGDNCNFSHDAIPSTKSMPCTHHACGSCMKGNDCPYDHQLKKYPCSNFVSQGSCCRGGECKFSHQVQTSQDIPTPTNACKPELKSPLSSGNTNFSTPLNNHGTGSVQQNNSNSKRIYSHTNVEHKVDVSQTKPTSAPKGIRFINVANLSPSTPKQDTVQPNKGNLVHSGTCADKGQNTAEISKNIPAVMPKGVNFLSFGKGSVCSFKRSIHSTAEGMILKLPQSVNFGLSEHSVSLLNKDDNGKTSDRTAQNLPQTALFSHEISDKNQSMAERLKSRFLGKDSADDSVRDHSHCKSVQEVNKASDNSQASTVTSATLLASPFVSLQSSEGLVSRCHKQASNLGQRAFISTLAFAAEHESNIKMKCPTGASPALPNLLDDNQVGGCLVYYVSISLAVWLQVMHSCCVLYDNKFAKVDFSIYLSVTYTSNILASGNDLSFEVVTLSKLAVF*