AlfalfaGEDB | Msa0362090

M. sativa cultivar zhongmu-4 / Msa0362090

KEGG: K08867
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0362090	XP_013459948.1	94.958	119	6	0	7	125	166	284	2.59e-75	235

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0362090	sp\|Q6ICW6\|WNK11_ARATH	79.310	116	24	0	10	125	174	289	1.74e-64	201

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0362090	A0A072UVY5	94.958	119	6	0	7	125	166	284	1.24e-75	235

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0362090	MtrunA17_Chr3g0101111	94.958	119	6	0	7	125	166	284	2.39e-79	235
Msa0362090	MtrunA17_Chr3g0101091	94.118	119	7	0	7	125	166	284	2.44e-78	233
Msa0362090	MtrunA17_Chr3g0101081	94.118	119	7	0	7	125	166	284	2.44e-78	233
Msa0362090	MtrunA17_Chr7g0225201	90.756	119	11	0	7	125	167	285	1.00e-75	226
Msa0362090	MtrunA17_Chr3g0132681	89.916	119	12	0	7	125	167	285	9.03e-75	224
Msa0362090	MtrunA17_Chr5g0445271	85.345	116	17	0	10	125	170	285	2.68e-71	215
Msa0362090	MtrunA17_Chr5g0447731	78.632	117	25	0	10	126	166	282	1.13e-66	203
Msa0362090	MtrunA17_Chr7g0273851	69.828	116	34	1	10	125	167	281	6.71e-50	168
Msa0362090	MtrunA17_Chr1g0190951	66.949	118	38	1	10	127	167	283	1.38e-48	165
Msa0362090	MtrunA17_Chr7g0244601	63.793	116	42	0	10	125	171	286	3.67e-48	162

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0362090	AT5G55560.1	79.310	116	24	0	10	125	174	289	1.77e-65	201
Msa0362090	AT3G48260.2	66.379	116	39	0	10	125	70	185	1.66e-50	166
Msa0362090	AT3G48260.1	66.379	116	39	0	10	125	165	280	8.37e-50	166
Msa0362090	AT3G04910.3	69.828	116	34	1	10	125	41	155	6.36e-49	164
Msa0362090	AT3G04910.2	68.644	118	36	1	10	127	144	260	2.03e-47	161
Msa0362090	AT3G04910.1	68.644	118	36	1	10	127	167	283	3.30e-47	161
Msa0362090	AT3G51630.1	66.379	116	39	0	10	125	168	283	1.65e-46	157
Msa0362090	AT3G51630.2	66.379	116	39	0	10	125	168	283	1.65e-46	157
Msa0362090	AT5G28080.4	64.655	116	40	1	10	125	82	196	3.64e-46	154
Msa0362090	AT5G28080.3	64.655	116	40	1	10	125	82	196	3.64e-46	154

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Find 25 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTCTCGCTCAACCA+AGG	0.579858	3_1:+52923426	Msa0362090:CDS
AAAGTGTCTCGCTCAACCAA+GGG	0.644670	3_1:+52923427	Msa0362090:CDS
AAGGGCTAGACCTTCTGCTG+AGG	0.666215	3_1:+52923445	Msa0362090:CDS
AATGTATATTAGGTTAAGAT+TGG	0.380565	3_1:+52923131	Msa0362090:intron
ACATTGTCACATTCACTATA+TGG	0.341582	3_1:-52923317	None:intergenic
AGCTCTGGTGCCATAAATTC+CGG	0.461898	3_1:-52923215	None:intergenic
ATATACAAGAAGGTGACTTC+AGG	0.446476	3_1:+52923347	Msa0362090:CDS
ATGGTAGACATATACTCATT+TGG	0.414002	3_1:+52923260	Msa0362090:CDS
CATTCAGCGCATTCAGTTCT+AGG	0.181449	3_1:+52923188	Msa0362090:CDS
CTTAGGTTTGGCAGCAATTG+TGG	0.415298	3_1:+52923157	Msa0362090:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATGCATCTTGTTGATAT+GGG	-	chr3_1:52918996-52919015	None:intergenic	30.0%
AAGATGCATCTTGTTGATAT+GGG	-	chr3_1:52918996-52919015	None:intergenic	30.0%
TCTAATGTTTATGGAGGTTT+CGG	-	chr3_1:52919761-52919780	None:intergenic	30.0%
GAAAGAAACGTTTAATCACT+TGG	-	chr3_1:52919917-52919936	None:intergenic	30.0%
GCCGATTATTATGTATTTGA+AGG	+	chr3_1:52920167-52920186	Msa0362090:intron	30.0%
CTTATTGTGAAAAAGCAAAG+AGG	+	chr3_1:52920220-52920239	Msa0362090:intron	30.0%
TAGAGGAACTAGCTATTTAT+AGG	+	chr3_1:52920334-52920353	Msa0362090:intron	30.0%
AGAGGAACTAGCTATTTATA+GGG	+	chr3_1:52920335-52920354	Msa0362090:intron	30.0%
ATACAATCCTACTTGAATAG+AGG	+	chr3_1:52920358-52920377	Msa0362090:intron	30.0%
GTCATTGAAATAGATAACCA+TGG	+	chr3_1:52920655-52920674	Msa0362090:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	52918645	52923499	52918645	ID=Msa0362090;Name=Msa0362090
chr3_1	mRNA	52918645	52923499	52918645	ID=Msa0362090-mRNA-1;Parent=Msa0362090;Name=Msa0362090-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0\|0\|0\|0.2\|1\|1\|5\|0\|127
chr3_1	exon	52918645	52918650	52918645	ID=Msa0362090-mRNA-1:exon:9593;Parent=Msa0362090-mRNA-1
chr3_1	exon	52921618	52921623	52921618	ID=Msa0362090-mRNA-1:exon:9594;Parent=Msa0362090-mRNA-1
chr3_1	exon	52921873	52921879	52921873	ID=Msa0362090-mRNA-1:exon:9595;Parent=Msa0362090-mRNA-1
chr3_1	exon	52922059	52922066	52922059	ID=Msa0362090-mRNA-1:exon:9596;Parent=Msa0362090-mRNA-1
chr3_1	exon	52923143	52923499	52923143	ID=Msa0362090-mRNA-1:exon:9597;Parent=Msa0362090-mRNA-1
chr3_1	CDS	52918645	52918650	52918645	ID=Msa0362090-mRNA-1:cds;Parent=Msa0362090-mRNA-1
chr3_1	CDS	52921618	52921623	52921618	ID=Msa0362090-mRNA-1:cds;Parent=Msa0362090-mRNA-1
chr3_1	CDS	52921873	52921879	52921873	ID=Msa0362090-mRNA-1:cds;Parent=Msa0362090-mRNA-1
chr3_1	CDS	52922059	52922066	52922059	ID=Msa0362090-mRNA-1:cds;Parent=Msa0362090-mRNA-1
chr3_1	CDS	52923143	52923499	52923143	ID=Msa0362090-mRNA-1:cds;Parent=Msa0362090-mRNA-1

Gene Sequence

>Msa0362090

ATGAATTTTTTGTGTGTTACGGAAACGGTTAAGATTGGTGACTTAGGTTTGGCAGCAATTGTGGGAAAGAATCATTCAGCGCATTCAGTTCTAGGCACACCGGAATTTATGGCACCAGAGCTATATGAAGAGGATTACACAGAAATGGTAGACATATACTCATTTGGAATGTTAGTATTAGAGATGGTGACACTAGAGATTCCATATAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGACTTCAGGTGTGAGACCGCAATCCTTGAACAAGATAAAAGATGTAGAAGTGAAGACTTTCATCGAAAAGTGTCTCGCTCAACCAAGGGCTAGACCTTCTGCTGAGGAATTGCTAAAGGATCCTTTTTTGATGATGTAG

Protein sequence

>Msa0362090

MNFLCVTETVKIGDLGLAAIVGKNHSAHSVLGTPEFMAPELYEEDYTEMVDIYSFGMLVLEMVTLEIPYSECDNVAKIYKKVTSGVRPQSLNKIKDVEVKTFIEKCLAQPRARPSAEELLKDPFLMM*