AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0362090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362090 MtrunA17_Chr3g0101111 94.958 119 6 0 7 125 166 284 2.39e-79 235
Msa0362090 MtrunA17_Chr3g0101091 94.118 119 7 0 7 125 166 284 2.44e-78 233
Msa0362090 MtrunA17_Chr3g0101081 94.118 119 7 0 7 125 166 284 2.44e-78 233
Msa0362090 MtrunA17_Chr7g0225201 90.756 119 11 0 7 125 167 285 1.00e-75 226
Msa0362090 MtrunA17_Chr3g0132681 89.916 119 12 0 7 125 167 285 9.03e-75 224
Msa0362090 MtrunA17_Chr5g0445271 85.345 116 17 0 10 125 170 285 2.68e-71 215
Msa0362090 MtrunA17_Chr5g0447731 78.632 117 25 0 10 126 166 282 1.13e-66 203
Msa0362090 MtrunA17_Chr7g0273851 69.828 116 34 1 10 125 167 281 6.71e-50 168
Msa0362090 MtrunA17_Chr1g0190951 66.949 118 38 1 10 127 167 283 1.38e-48 165
Msa0362090 MtrunA17_Chr7g0244601 63.793 116 42 0 10 125 171 286 3.67e-48 162
Msa0362090 MtrunA17_Chr1g0205471 68.644 118 35 2 10 127 167 282 2.24e-46 159
Msa0362090 MtrunA17_Chr5g0432541 64.655 116 41 0 10 125 170 285 3.87e-46 156
Msa0362090 MtrunA17_Chr3g0129771 64.655 116 40 1 10 125 176 290 1.22e-45 156
Msa0362090 MtrunA17_Chr8g0384001 58.475 118 48 1 10 127 171 287 1.55e-42 147
Msa0362090 MtrunA17_Chr8g0346511 69.492 118 35 1 10 127 181 297 3.66e-42 147
Msa0362090 MtrunA17_Chr4g0013051 66.379 116 39 0 10 125 167 282 1.08e-40 142
Msa0362090 MtrunA17_Chr3g0116811 66.667 117 39 0 10 126 169 285 1.27e-40 142
Msa0362090 MtrunA17_Chr6g0455931 65.812 117 40 0 10 126 172 288 1.43e-40 142
Msa0362090 MtrunA17_Chr3g0119911 68.103 116 36 1 10 125 163 277 4.14e-40 140
Msa0362090 MtrunA17_Chr1g0202831 38.655 119 69 3 10 125 550 667 1.25e-17 77.8
Msa0362090 MtrunA17_Chr3g0130151 36.134 119 72 3 10 125 383 500 3.66e-17 76.3
Msa0362090 MtrunA17_Chr8g0384301 35.246 122 69 4 10 125 438 555 7.78e-15 69.7
Msa0362090 MtrunA17_Chr8g0386981 35.294 119 73 3 10 125 547 664 1.33e-14 68.9
Msa0362090 MtrunA17_Chr4g0051191 36.290 124 72 5 6 125 297 417 4.34e-14 67.4
Msa0362090 MtrunA17_Chr4g0041201 35.965 114 67 3 9 120 683 792 9.34e-14 66.6
Msa0362090 MtrunA17_Chr5g0424501 33.884 121 73 5 9 125 328 445 4.59e-13 64.3
Msa0362090 MtrunA17_Chr2g0310781 37.168 113 66 3 11 119 993 1104 9.44e-13 63.5
Msa0362090 MtrunA17_Chr2g0299991 31.852 135 71 5 10 127 206 336 1.29e-12 63.2
Msa0362090 MtrunA17_Chr7g0260191 33.600 125 79 3 3 125 136 258 1.38e-12 63.2
Msa0362090 MtrunA17_Chr4g0025671 34.127 126 79 3 3 126 140 263 1.38e-12 63.2
Msa0362090 MtrunA17_Chr1g0185221 33.600 125 79 3 3 125 136 258 2.90e-12 62.4
Msa0362090 MtrunA17_Chr1g0179331 34.783 115 71 4 9 120 693 806 5.47e-12 61.6
Msa0362090 MtrunA17_Chr3g0115171 35.433 127 71 5 6 126 416 537 6.98e-12 61.2
Msa0362090 MtrunA17_Chr5g0419441 31.967 122 74 5 10 125 375 493 1.23e-11 60.5
Msa0362090 MtrunA17_Chr1g0173921 32.000 125 81 3 3 125 136 258 1.63e-11 60.1
Msa0362090 MtrunA17_Chr1g0196631 37.168 113 66 3 11 119 1048 1159 1.70e-11 60.1
Msa0362090 MtrunA17_Chr1g0190831 34.127 126 77 3 3 125 136 258 1.80e-11 60.1
Msa0362090 MtrunA17_Chr3g0133541 33.600 125 71 4 10 125 447 568 1.81e-11 60.1
Msa0362090 MtrunA17_Chr5g0402601 33.071 127 69 5 10 125 512 633 2.32e-11 59.7
Msa0362090 MtrunA17_Chr2g0294351 34.746 118 69 6 9 121 602 716 3.22e-11 59.3
Msa0362090 MtrunA17_Chr5g0427651 34.677 124 70 5 10 123 785 907 3.38e-11 59.3
Msa0362090 MtrunA17_Chr1g0191171 37.168 113 67 4 10 119 826 937 8.59e-11 58.2
Msa0362090 MtrunA17_Chr2g0321841 32.540 126 81 3 3 126 136 259 9.96e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362090 AT5G55560.1 79.310 116 24 0 10 125 174 289 1.77e-65 201
Msa0362090 AT3G48260.2 66.379 116 39 0 10 125 70 185 1.66e-50 166
Msa0362090 AT3G48260.1 66.379 116 39 0 10 125 165 280 8.37e-50 166
Msa0362090 AT3G04910.3 69.828 116 34 1 10 125 41 155 6.36e-49 164
Msa0362090 AT3G04910.2 68.644 118 36 1 10 127 144 260 2.03e-47 161
Msa0362090 AT3G04910.1 68.644 118 36 1 10 127 167 283 3.30e-47 161
Msa0362090 AT3G51630.1 66.379 116 39 0 10 125 168 283 1.65e-46 157
Msa0362090 AT3G51630.2 66.379 116 39 0 10 125 168 283 1.65e-46 157
Msa0362090 AT5G28080.4 64.655 116 40 1 10 125 82 196 3.64e-46 154
Msa0362090 AT5G28080.3 64.655 116 40 1 10 125 82 196 3.64e-46 154
Msa0362090 AT5G28080.5 64.655 116 40 1 10 125 82 196 3.64e-46 154
Msa0362090 AT5G28080.6 64.655 116 40 1 10 125 82 196 3.64e-46 154
Msa0362090 AT5G28080.7 64.655 116 40 1 10 125 82 196 3.64e-46 154
Msa0362090 AT3G18750.4 63.559 118 42 1 10 127 153 269 6.43e-46 156
Msa0362090 AT3G18750.1 63.559 118 42 1 10 127 171 287 1.18e-45 155
Msa0362090 AT3G18750.3 63.559 118 42 1 10 127 171 287 1.18e-45 155
Msa0362090 AT3G18750.5 63.559 118 42 1 10 127 171 287 1.18e-45 155
Msa0362090 AT1G49160.7 65.517 116 39 1 10 125 44 158 1.53e-45 153
Msa0362090 AT1G49160.6 65.517 116 39 1 10 125 44 158 1.53e-45 153
Msa0362090 AT1G49160.4 65.517 116 39 1 10 125 44 158 1.53e-45 153
Msa0362090 AT5G58350.1 60.345 116 46 0 10 125 162 277 2.35e-45 155
Msa0362090 AT5G28080.2 64.655 116 40 1 10 125 168 282 2.49e-45 153
Msa0362090 AT5G28080.8 63.559 118 42 1 10 127 131 247 6.36e-45 152
Msa0362090 AT1G49160.1 65.517 116 39 1 10 125 153 267 6.61e-45 153
Msa0362090 AT1G49160.3 65.517 116 39 1 10 125 218 332 8.62e-45 152
Msa0362090 AT1G49160.2 65.517 116 39 1 10 125 171 285 1.19e-44 152
Msa0362090 AT1G49160.5 65.517 116 39 1 10 125 218 332 2.33e-44 152
Msa0362090 AT3G22420.1 62.393 117 43 1 10 126 167 282 3.38e-44 151
Msa0362090 AT3G22420.4 62.931 116 42 1 10 125 238 352 3.89e-44 152
Msa0362090 AT3G22420.5 62.393 117 43 1 10 126 167 282 4.36e-44 152
Msa0362090 AT3G22420.3 62.931 116 42 1 10 125 238 352 4.81e-44 152
Msa0362090 AT1G64630.1 67.227 119 38 1 7 125 156 273 3.60e-41 143
Msa0362090 AT5G41990.1 65.546 119 40 1 7 125 169 286 1.82e-40 141
Msa0362090 AT3G22420.6 49.660 147 43 1 10 125 167 313 1.60e-39 139
Msa0362090 AT3G22420.2 49.660 147 43 1 10 125 167 313 1.98e-39 139
Msa0362090 AT5G28080.1 61.538 91 35 0 37 127 1 91 1.55e-32 116
Msa0362090 AT1G53570.6 37.815 119 70 3 10 125 353 470 4.70e-18 79.3
Msa0362090 AT1G53570.7 37.815 119 70 3 10 125 353 470 4.70e-18 79.3
Msa0362090 AT1G53570.4 37.815 119 70 3 10 125 353 470 6.73e-18 79.0
Msa0362090 AT1G53570.2 37.815 119 70 3 10 125 353 470 6.73e-18 79.0
Msa0362090 AT1G53570.3 37.815 119 70 3 10 125 353 470 6.73e-18 79.0
Msa0362090 AT1G53570.1 37.815 119 70 3 10 125 353 470 6.73e-18 79.0
Msa0362090 AT4G08500.1 38.843 121 66 5 10 125 470 587 9.77e-17 75.5
Msa0362090 AT1G53570.5 36.667 120 65 4 16 125 326 444 1.70e-15 72.0
Msa0362090 AT2G31010.1 36.522 115 67 3 9 121 655 765 6.65e-14 67.4
Msa0362090 AT2G31010.2 36.522 115 67 3 9 121 655 765 6.65e-14 67.4
Msa0362090 AT1G67890.1 37.931 116 65 5 9 120 623 735 9.87e-14 67.0
Msa0362090 AT3G20860.1 33.846 130 72 4 3 125 135 257 1.41e-13 66.2
Msa0362090 AT1G63700.1 34.454 119 74 3 10 125 539 656 1.84e-13 66.2
Msa0362090 AT1G63700.2 34.454 119 74 3 10 125 539 656 1.84e-13 66.2
Msa0362090 AT5G28290.1 32.283 127 78 4 3 125 136 258 5.19e-13 64.7
Msa0362090 AT5G28290.2 32.283 127 78 4 3 125 136 258 5.19e-13 64.7
Msa0362090 AT5G28290.3 32.283 127 78 4 3 125 136 258 5.27e-13 64.7
Msa0362090 AT1G54510.4 33.594 128 77 4 3 126 136 259 5.56e-13 64.7
Msa0362090 AT1G54510.2 33.594 128 77 4 3 126 136 259 5.56e-13 64.7
Msa0362090 AT1G54510.1 33.594 128 77 4 3 126 136 259 5.56e-13 64.7
Msa0362090 AT1G54510.3 33.594 128 77 4 3 126 136 259 5.56e-13 64.7
Msa0362090 AT4G26890.1 38.655 119 65 5 10 125 140 253 5.91e-13 64.7
Msa0362090 AT3G63280.4 32.031 128 79 4 3 126 190 313 9.37e-13 63.9
Msa0362090 AT3G63280.2 32.031 128 79 4 3 126 136 259 1.10e-12 63.9
Msa0362090 AT3G63280.3 32.031 128 79 4 3 126 136 259 1.10e-12 63.9
Msa0362090 AT3G63280.1 32.031 128 79 4 3 126 136 259 1.10e-12 63.9
Msa0362090 AT3G04810.2 31.496 127 79 4 3 125 136 258 1.64e-12 63.5
Msa0362090 AT3G04810.1 31.496 127 79 4 3 125 136 258 1.64e-12 63.5
Msa0362090 AT3G04810.3 31.496 127 79 4 3 125 136 258 1.64e-12 63.5
Msa0362090 AT5G49470.1 35.593 118 68 6 9 121 340 454 1.91e-12 63.2
Msa0362090 AT4G08470.3 35.772 123 71 5 9 126 357 476 1.94e-12 63.2
Msa0362090 AT5G49470.7 35.593 118 68 6 9 121 500 614 1.99e-12 63.2
Msa0362090 AT5G49470.4 35.593 118 68 6 9 121 601 715 2.02e-12 63.2
Msa0362090 AT5G49470.3 35.593 118 68 6 9 121 627 741 2.03e-12 63.2
Msa0362090 AT5G49470.2 35.593 118 68 6 9 121 688 802 2.04e-12 63.2
Msa0362090 AT4G08470.1 35.772 123 71 5 9 126 439 558 2.39e-12 62.8
Msa0362090 AT2G24360.1 30.579 121 81 3 3 121 263 382 3.87e-12 62.4
Msa0362090 AT1G53165.3 32.500 120 75 4 10 125 150 267 6.93e-12 61.6
Msa0362090 AT1G53165.2 32.500 120 75 4 10 125 150 267 6.99e-12 61.6
Msa0362090 AT1G53165.1 32.500 120 75 4 10 125 150 267 7.05e-12 61.6
Msa0362090 AT3G44200.2 33.333 126 80 3 3 126 140 263 8.19e-12 61.2
Msa0362090 AT3G44200.1 33.333 126 80 3 3 126 140 263 8.19e-12 61.2
Msa0362090 AT3G06620.1 35.897 117 67 6 9 120 630 743 1.37e-11 60.8
Msa0362090 AT5G03730.2 35.455 110 67 4 9 115 689 797 1.61e-11 60.5
Msa0362090 AT5G03730.1 35.455 110 67 4 9 115 689 797 1.61e-11 60.5
Msa0362090 AT3G06630.2 35.593 118 68 5 9 121 570 684 1.76e-11 60.5
Msa0362090 AT4G12020.3 34.167 120 60 5 9 127 1762 1863 1.77e-11 60.5
Msa0362090 AT4G12020.10 34.167 120 60 5 9 127 1754 1855 1.90e-11 60.5
Msa0362090 AT5G66850.2 33.333 126 70 4 10 125 486 607 2.46e-11 60.1
Msa0362090 AT5G66850.1 33.333 126 70 4 10 125 486 607 2.65e-11 60.1
Msa0362090 AT1G16270.1 35.398 113 68 3 11 119 1011 1122 2.68e-11 60.1
Msa0362090 AT1G16270.2 35.398 113 68 3 11 119 1011 1122 2.68e-11 60.1
Msa0362090 AT1G16270.3 35.398 113 68 3 11 119 1011 1122 2.68e-11 60.1
Msa0362090 AT1G72180.1 33.077 130 66 6 11 121 829 956 2.72e-11 60.1
Msa0362090 AT4G31170.7 29.752 121 82 3 3 121 264 383 3.90e-11 59.3
Msa0362090 AT4G31170.6 29.752 121 82 3 3 121 264 383 3.90e-11 59.3
Msa0362090 AT4G31170.5 29.752 121 82 3 3 121 264 383 3.90e-11 59.3
Msa0362090 AT4G31170.1 29.752 121 82 3 3 121 264 383 3.90e-11 59.3
Msa0362090 AT4G31170.2 29.752 121 82 3 3 121 264 383 3.90e-11 59.3
Msa0362090 AT4G31170.3 29.752 121 82 3 3 121 264 383 3.90e-11 59.3
Msa0362090 AT4G31170.8 29.752 121 82 3 3 121 264 383 3.90e-11 59.3
Msa0362090 AT4G26070.5 33.071 127 76 5 10 127 191 317 6.76e-11 58.5
Msa0362090 AT4G26070.2 33.071 127 76 5 10 127 204 330 6.85e-11 58.5
Msa0362090 AT4G26070.3 33.071 127 76 5 10 127 204 330 6.85e-11 58.5
Msa0362090 AT4G26070.4 33.071 127 76 5 10 127 203 329 7.54e-11 58.5
Msa0362090 AT1G69220.2 32.258 124 71 6 10 125 358 476 9.81e-11 58.2

Find 25 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGCGCATTCAGTTCT+AGG 0.181449 3_1:+52923188 Msa0362090:CDS
TCTAGGCACACCGGAATTTA+TGG 0.201363 3_1:+52923205 Msa0362090:CDS
ACATTGTCACATTCACTATA+TGG 0.341582 3_1:-52923317 None:intergenic
AATGTATATTAGGTTAAGAT+TGG 0.380565 3_1:+52923131 Msa0362090:intron
ATGGTAGACATATACTCATT+TGG 0.414002 3_1:+52923260 Msa0362090:CDS
CTTAGGTTTGGCAGCAATTG+TGG 0.415298 3_1:+52923157 Msa0362090:CDS
TTTAATATTTATAGCGGAAA+CGG 0.446178 3_1:+52922045 Msa0362090:intron
ATATACAAGAAGGTGACTTC+AGG 0.446476 3_1:+52923347 Msa0362090:CDS
TAGGTTAAGATTGGTGACTT+AGG 0.448927 3_1:+52923140 Msa0362090:intron
TAAGATTGGTGACTTAGGTT+TGG 0.458074 3_1:+52923145 Msa0362090:CDS
AGCTCTGGTGCCATAAATTC+CGG 0.461898 3_1:-52923215 None:intergenic
TAATCCTCTTCATATAGCTC+TGG 0.477445 3_1:-52923230 None:intergenic
TGAAGAGGATTACACAGAAA+TGG 0.479001 3_1:+52923241 Msa0362090:CDS
TCAGCAGAAGGTCTAGCCCT+TGG 0.491026 3_1:-52923443 None:intergenic
TTAGGTTTGGCAGCAATTGT+GGG 0.502201 3_1:+52923158 Msa0362090:CDS
TTTATCTTGTTCAAGGATTG+CGG 0.530284 3_1:-52923377 None:intergenic
TTCTGCTGAGGAATTGCTAA+AGG 0.536575 3_1:+52923457 Msa0362090:CDS
TGGAATGTTAGTATTAGAGA+TGG 0.547641 3_1:+52923280 Msa0362090:CDS
AAAAGTGTCTCGCTCAACCA+AGG 0.579858 3_1:+52923426 Msa0362090:CDS
TTTAGCAATTCCTCAGCAGA+AGG 0.580675 3_1:-52923455 None:intergenic
TGTTGCAAAGATATACAAGA+AGG 0.609288 3_1:+52923337 Msa0362090:CDS
GGCACCAGAGCTATATGAAG+AGG 0.616021 3_1:+52923226 Msa0362090:CDS
AAAGTGTCTCGCTCAACCAA+GGG 0.644670 3_1:+52923427 Msa0362090:CDS
AAGGGCTAGACCTTCTGCTG+AGG 0.666215 3_1:+52923445 Msa0362090:CDS
GCATTCAGTTCTAGGCACAC+CGG 0.687251 3_1:+52923196 Msa0362090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTGTTATATTGT+TGG + chr3_1:52920631-52920650 Msa0362090:intron 10.0%
!!! ATATTATTTTGTTATATTGT+TGG + chr3_1:52921084-52921103 Msa0362090:intron 10.0%
!! TAACATTTCAAAATTATTAA+CGG - chr3_1:52921216-52921235 None:intergenic 10.0%
!!! TTTTTATTTTTTAACTTTGT+TGG + chr3_1:52921754-52921773 Msa0362090:intron 10.0%
!!! TATTTGTTTTAATGTATATT+AGG + chr3_1:52923121-52923140 Msa0362090:intron 10.0%
!! AAGTATATATAAAAAAATCC+AGG - chr3_1:52919692-52919711 None:intergenic 15.0%
!!! TTTTTTTTTAAGGATTAACT+AGG - chr3_1:52920422-52920441 None:intergenic 15.0%
!!! AACTAGGTTTTTTTTTTTTA+AGG - chr3_1:52920432-52920451 None:intergenic 15.0%
!!! TTTATAATTTAAGATTAGCT+AGG - chr3_1:52920475-52920494 None:intergenic 15.0%
!! CAAAAAAAAAAGTTGTTTAA+GGG - chr3_1:52921037-52921056 None:intergenic 15.0%
!! ACAAAAAAAAAAGTTGTTTA+AGG - chr3_1:52921038-52921057 None:intergenic 15.0%
!! AAGAACAATTTCTTTAAATT+CGG + chr3_1:52921264-52921283 Msa0362090:intron 15.0%
!!! AAAAAGACTAAATTTTAACA+CGG + chr3_1:52921350-52921369 Msa0362090:intron 15.0%
!!! GGATAAATGTTAAATATTTT+TGG - chr3_1:52921508-52921527 None:intergenic 15.0%
!!! AATCAACAAACATTTTTAAA+AGG - chr3_1:52922196-52922215 None:intergenic 15.0%
!! ATATAAAAAAATCCAGGTTA+GGG - chr3_1:52919686-52919705 None:intergenic 20.0%
!! TATATAAAAAAATCCAGGTT+AGG - chr3_1:52919687-52919706 None:intergenic 20.0%
!!! TTCAATATTTTCTCTTGATT+TGG + chr3_1:52919735-52919754 Msa0362090:intron 20.0%
!!! TACTAGTTTATGATATAACA+AGG - chr3_1:52919939-52919958 None:intergenic 20.0%
!!! AGAGATTTGTATTTTTAAGT+AGG + chr3_1:52920260-52920279 Msa0362090:intron 20.0%
!!! TTTTTTAAGGAAGATTAACT+AGG - chr3_1:52920448-52920467 None:intergenic 20.0%
!!! TTAGCTAGGTTTTTTTTTTA+AGG - chr3_1:52920461-52920480 None:intergenic 20.0%
!! TTATTTGTATTGAAAGTTGA+GGG - chr3_1:52920857-52920876 None:intergenic 20.0%
!!! AAAAGACTAAATTTTAACAC+GGG + chr3_1:52921351-52921370 Msa0362090:intron 20.0%
!!! ATATTTTTGGAATTCAGTAT+TGG - chr3_1:52921495-52921514 None:intergenic 20.0%
!!! TATTTGATTTGATTCACATT+AGG - chr3_1:52921529-52921548 None:intergenic 20.0%
!! AAGTATATATACCCAAATTA+CGG - chr3_1:52921568-52921587 None:intergenic 20.0%
!! TAATTTGGGTATATATACTT+CGG + chr3_1:52921568-52921587 Msa0362090:intron 20.0%
!!! TTTTTCACATTTCTAGTTTT+TGG + chr3_1:52921602-52921621 Msa0362090:intron 20.0%
!!! AAGAGTTTTTGAATAATGAA+TGG - chr3_1:52921716-52921735 None:intergenic 20.0%
!! GAAATAAAAAACCTTGATTT+GGG - chr3_1:52921833-52921852 None:intergenic 20.0%
!! AGAAATAAAAAACCTTGATT+TGG - chr3_1:52921834-52921853 None:intergenic 20.0%
!! TATAACTTAATAGTTAGACT+TGG - chr3_1:52922018-52922037 None:intergenic 20.0%
!!! TTTAATATTTATAGCGGAAA+CGG + chr3_1:52922045-52922064 Msa0362090:intron 20.0%
!!! TTTTGTTCTTTGAAAATCAA+AGG + chr3_1:52922214-52922233 Msa0362090:intron 20.0%
!! AATGTATATTAGGTTAAGAT+TGG + chr3_1:52923131-52923150 Msa0362090:intron 20.0%
! GAAGACTTATAAGAATTGTT+AGG + chr3_1:52918965-52918984 Msa0362090:intron 25.0%
! GAAGACTTATAAGAATTGTT+AGG + chr3_1:52918965-52918984 Msa0362090:intron 25.0%
! ATCAAGAGAAAATATTGAAG+AGG - chr3_1:52919734-52919753 None:intergenic 25.0%
! GATATGATCATTATGTTGAT+CGG - chr3_1:52919856-52919875 None:intergenic 25.0%
! GCCTTCAAATACATAATAAT+CGG - chr3_1:52920171-52920190 None:intergenic 25.0%
! TTATTGTGAAAAAGCAAAGA+GGG + chr3_1:52920221-52920240 Msa0362090:intron 25.0%
! ATAACAAATCAATGTAACCA+TGG - chr3_1:52920675-52920694 None:intergenic 25.0%
! GTTATTTGTATTGAAAGTTG+AGG - chr3_1:52920858-52920877 None:intergenic 25.0%
! ATAGATGATCACGATTAATT+TGG + chr3_1:52921117-52921136 Msa0362090:intron 25.0%
! TACAGAACTGTATTCAATTT+AGG + chr3_1:52921781-52921800 Msa0362090:intron 25.0%
! ATTTATATGTTGAGACACTA+GGG - chr3_1:52922166-52922185 None:intergenic 25.0%
! AATTTATATGTTGAGACACT+AGG - chr3_1:52922167-52922186 None:intergenic 25.0%
! TAATTCGTTTATTGTTGAAG+AGG + chr3_1:52922297-52922316 Msa0362090:intron 25.0%
!!! AAAGCATTTGATAATGAAGA+AGG + chr3_1:52922672-52922691 Msa0362090:intron 25.0%
!! ACATAAGCATGTTTCTATTA+AGG + chr3_1:52922908-52922927 Msa0362090:intron 25.0%
!! TACATCTTTTATCTTGTTCA+AGG - chr3_1:52923387-52923406 None:intergenic 25.0%
AAGATGCATCTTGTTGATAT+GGG - chr3_1:52918996-52919015 None:intergenic 30.0%
! AACAAGATGCATCTTCTTTT+CGG + chr3_1:52919001-52919020 Msa0362090:intron 30.0%
AAGATGCATCTTGTTGATAT+GGG - chr3_1:52918996-52919015 None:intergenic 30.0%
! AACAAGATGCATCTTCTTTT+CGG + chr3_1:52919001-52919020 Msa0362090:intron 30.0%
TCTAATGTTTATGGAGGTTT+CGG - chr3_1:52919761-52919780 None:intergenic 30.0%
GAAAGAAACGTTTAATCACT+TGG - chr3_1:52919917-52919936 None:intergenic 30.0%
! TCCAATCAAGTTGCAAATAT+GGG - chr3_1:52920028-52920047 None:intergenic 30.0%
! ATCCAATCAAGTTGCAAATA+TGG - chr3_1:52920029-52920048 None:intergenic 30.0%
GCCGATTATTATGTATTTGA+AGG + chr3_1:52920167-52920186 Msa0362090:intron 30.0%
CTTATTGTGAAAAAGCAAAG+AGG + chr3_1:52920220-52920239 Msa0362090:intron 30.0%
!!! GTTGTGATGGTTTTAAAAAG+TGG + chr3_1:52920310-52920329 Msa0362090:intron 30.0%
!!! TGGTTTTAAAAAGTGGATAG+AGG + chr3_1:52920317-52920336 Msa0362090:intron 30.0%
TAGAGGAACTAGCTATTTAT+AGG + chr3_1:52920334-52920353 Msa0362090:intron 30.0%
AGAGGAACTAGCTATTTATA+GGG + chr3_1:52920335-52920354 Msa0362090:intron 30.0%
ATACAATCCTACTTGAATAG+AGG + chr3_1:52920358-52920377 Msa0362090:intron 30.0%
!! ACTAGGTTTGTTATATCAGT+AGG - chr3_1:52920405-52920424 None:intergenic 30.0%
GTCATTGAAATAGATAACCA+TGG + chr3_1:52920655-52920674 Msa0362090:intron 30.0%
CAATAAAAAGAGCGGAAAAA+TGG + chr3_1:52921239-52921258 Msa0362090:intron 30.0%
!! CAAACTCTTAATTTGAGTTG+CGG + chr3_1:52921456-52921475 Msa0362090:intron 30.0%
GATTATTTGAAAAGAGAGAG+TGG - chr3_1:52921643-52921662 None:intergenic 30.0%
TATTAAACATATTACGCACG+CGG - chr3_1:52922077-52922096 None:intergenic 30.0%
TCTTGATCAAAGTATGACTA+TGG + chr3_1:52922122-52922141 Msa0362090:intron 30.0%
ATAACCTACTTATTGAGACT+TGG - chr3_1:52922247-52922266 None:intergenic 30.0%
!! TAAGATTTTAATAGTCGTCG+CGG + chr3_1:52922269-52922288 Msa0362090:intron 30.0%
!! TTTTTATGGCTCTACAACAT+AGG - chr3_1:52922355-52922374 None:intergenic 30.0%
TGTAGAGCCATAAAAATGTT+AGG + chr3_1:52922359-52922378 Msa0362090:intron 30.0%
! ATCGTGACCTAACATTTTTA+TGG - chr3_1:52922369-52922388 None:intergenic 30.0%
!!! TTACTTTTTGGTCTCTAAGT+TGG + chr3_1:52922482-52922501 Msa0362090:intron 30.0%
! AAATGTTTCTGAGTCTTTGT+CGG - chr3_1:52922577-52922596 None:intergenic 30.0%
TAAAGTCTTTCAATCATTGC+AGG - chr3_1:52922747-52922766 None:intergenic 30.0%
! GAAGTGGTCTAAGAAAATTT+TGG + chr3_1:52922938-52922957 Msa0362090:intron 30.0%
! TGGTCTAAGAAAATTTTGGA+AGG + chr3_1:52922942-52922961 Msa0362090:intron 30.0%
!! GGTCTAAGAAAATTTTGGAA+GGG + chr3_1:52922943-52922962 Msa0362090:intron 30.0%
!! TGCAGTAATGTTTTTGTCAA+TGG + chr3_1:52923017-52923036 Msa0362090:intron 30.0%
! GTTTTTGTCAATGGAAATAC+TGG + chr3_1:52923026-52923045 Msa0362090:intron 30.0%
TGAAACAGAAATAATGTACC+TGG - chr3_1:52923052-52923071 None:intergenic 30.0%
ACATCTTGAGATAAACAACA+TGG - chr3_1:52923087-52923106 None:intergenic 30.0%
ATGGTAGACATATACTCATT+TGG + chr3_1:52923260-52923279 Msa0362090:CDS 30.0%
TGGAATGTTAGTATTAGAGA+TGG + chr3_1:52923280-52923299 Msa0362090:CDS 30.0%
ACATTGTCACATTCACTATA+TGG - chr3_1:52923320-52923339 None:intergenic 30.0%
TGTTGCAAAGATATACAAGA+AGG + chr3_1:52923337-52923356 Msa0362090:CDS 30.0%
TTTATCTTGTTCAAGGATTG+CGG - chr3_1:52923380-52923399 None:intergenic 30.0%
CATATGAGTCCTTATGCTTT+GGG - chr3_1:52918698-52918717 None:intergenic 35.0%
CATGGAATCAAAGTTGGATA+TGG - chr3_1:52918749-52918768 None:intergenic 35.0%
TGTTACAGTTTCTGATGTGT+TGG - chr3_1:52918780-52918799 None:intergenic 35.0%
GAAGATGCATCTTGTTGATA+TGG - chr3_1:52918997-52919016 None:intergenic 35.0%
GAAGATGCATCTTGTTGATA+TGG - chr3_1:52918997-52919016 None:intergenic 35.0%
GAAAGGTCTAATGTTTATGG+AGG - chr3_1:52919767-52919786 None:intergenic 35.0%
GGAGAAAGGTCTAATGTTTA+TGG - chr3_1:52919770-52919789 None:intergenic 35.0%
TCCCATATTTGCAACTTGAT+TGG + chr3_1:52920024-52920043 Msa0362090:intron 35.0%
!! GCAACAATTGGTGTCAAATT+CGG - chr3_1:52920078-52920097 None:intergenic 35.0%
TACATAATAATCGGCGACAT+GGG - chr3_1:52920162-52920181 None:intergenic 35.0%
ATACATAATAATCGGCGACA+TGG - chr3_1:52920163-52920182 None:intergenic 35.0%
GTTAGTTCCTCTATTCAAGT+AGG - chr3_1:52920368-52920387 None:intergenic 35.0%
TGTTAGCGCAATAAAAAGAG+CGG + chr3_1:52921231-52921250 Msa0362090:intron 35.0%
!! ACTAAATTTTAACACGGGAG+AGG + chr3_1:52921356-52921375 Msa0362090:intron 35.0%
TTTAACTGCACTCCGTAATT+TGG + chr3_1:52921553-52921572 Msa0362090:intron 35.0%
TTAACTGCACTCCGTAATTT+GGG + chr3_1:52921554-52921573 Msa0362090:intron 35.0%
TAGTAACAAGACCCAAATCA+AGG + chr3_1:52921819-52921838 Msa0362090:intron 35.0%
TCTCAATCAAACCTCGATTT+AGG - chr3_1:52921917-52921936 None:intergenic 35.0%
ATTTATATGTTGCGACACCA+GGG - chr3_1:52921949-52921968 None:intergenic 35.0%
AATTTATATGTTGCGACACC+AGG - chr3_1:52921950-52921969 None:intergenic 35.0%
!! TGGTGTCGCAACATATAAAT+TGG + chr3_1:52921949-52921968 Msa0362090:intron 35.0%
! GGTGTCGCAACATATAAATT+GGG + chr3_1:52921950-52921969 Msa0362090:intron 35.0%
CATACCAAGTCTCAATAAGT+AGG + chr3_1:52922240-52922259 Msa0362090:intron 35.0%
! GGCATCTAGAACAAAAAACA+TGG - chr3_1:52922534-52922553 None:intergenic 35.0%
!! GATGGATTTTGTTGAACACT+TGG - chr3_1:52922555-52922574 None:intergenic 35.0%
TTTGTTGAAACTGATCCAAC+CGG + chr3_1:52922594-52922613 Msa0362090:intron 35.0%
ATCGTATCTTCCATATCTTC+CGG - chr3_1:52922616-52922635 None:intergenic 35.0%
GGAAGATACGATGAATTACT+TGG + chr3_1:52922624-52922643 Msa0362090:intron 35.0%
AAGAAGGAATAGAAGTAGCA+TGG + chr3_1:52922688-52922707 Msa0362090:intron 35.0%
TCATTGCACTTTACAGTGTT+TGG + chr3_1:52922808-52922827 Msa0362090:intron 35.0%
TTTGTACAAGTGGGAATTTG+AGG + chr3_1:52922871-52922890 Msa0362090:intron 35.0%
TTGTACAAGTGGGAATTTGA+GGG + chr3_1:52922872-52922891 Msa0362090:intron 35.0%
!! CTATTAAGGCTTTGAAGAAG+TGG + chr3_1:52922922-52922941 Msa0362090:intron 35.0%
AGGTCTCTATGAATGATACA+AGG - chr3_1:52922993-52923012 None:intergenic 35.0%
CAAAAACATTACTGCAGTTG+AGG - chr3_1:52923013-52923032 None:intergenic 35.0%
! TAGGTTAAGATTGGTGACTT+AGG + chr3_1:52923140-52923159 Msa0362090:intron 35.0%
! TAAGATTGGTGACTTAGGTT+TGG + chr3_1:52923145-52923164 Msa0362090:CDS 35.0%
TAATCCTCTTCATATAGCTC+TGG - chr3_1:52923233-52923252 None:intergenic 35.0%
TGAAGAGGATTACACAGAAA+TGG + chr3_1:52923241-52923260 Msa0362090:CDS 35.0%
ATATACAAGAAGGTGACTTC+AGG + chr3_1:52923347-52923366 Msa0362090:CDS 35.0%
CCATATGAGTCCTTATGCTT+TGG - chr3_1:52918699-52918718 None:intergenic 40.0%
CCAAAGCATAAGGACTCATA+TGG + chr3_1:52918696-52918715 Msa0362090:intron 40.0%
GGAATCAAAGTTGGATATGG+TGG - chr3_1:52918746-52918765 None:intergenic 40.0%
GAGACTCATGGAATCAAAGT+TGG - chr3_1:52918755-52918774 None:intergenic 40.0%
TAAGAGGAACCGAATCACAT+CGG + chr3_1:52918893-52918912 Msa0362090:intron 40.0%
CATGTAGTCTCATACCTACA+CGG - chr3_1:52918938-52918957 None:intergenic 40.0%
GTATGAGACTACATGGTTGA+AGG + chr3_1:52918943-52918962 Msa0362090:intron 40.0%
!! AAAAGACTCGTGTTGGTTTG+TGG + chr3_1:52919139-52919158 Msa0362090:intron 40.0%
!! AAAGACTCGTGTTGGTTTGT+GGG + chr3_1:52919140-52919159 Msa0362090:intron 40.0%
TAAGAGGAACCGAATCACAT+CGG + chr3_1:52918893-52918912 Msa0362090:intron 40.0%
CATGTAGTCTCATACCTACA+CGG - chr3_1:52918938-52918957 None:intergenic 40.0%
GTATGAGACTACATGGTTGA+AGG + chr3_1:52918943-52918962 Msa0362090:intron 40.0%
GCTTAACTGTGGAGTTCTTA+TGG - chr3_1:52919514-52919533 None:intergenic 40.0%
!! AAAAGACTCGTGTTGGTTTG+TGG + chr3_1:52919139-52919158 Msa0362090:intron 40.0%
!! AAAGACTCGTGTTGGTTTGT+GGG + chr3_1:52919140-52919159 Msa0362090:intron 40.0%
TAACATCCCAGACTACTTTC+AGG - chr3_1:52919657-52919676 None:intergenic 40.0%
ATGTTACAGAAACCCTAACC+TGG + chr3_1:52919671-52919690 Msa0362090:intron 40.0%
AAGAAATTCGCGAAGGAGAA+AGG - chr3_1:52919784-52919803 None:intergenic 40.0%
AGAAGGTAAGAAATTCGCGA+AGG - chr3_1:52919791-52919810 None:intergenic 40.0%
CGCGAATTTCTTACCTTCTT+CGG + chr3_1:52919792-52919811 Msa0362090:intron 40.0%
CGTTTAATCACTTGGCTACT+TGG - chr3_1:52919909-52919928 None:intergenic 40.0%
GAAAAAGCAAAGAGGGAACA+AGG + chr3_1:52920228-52920247 Msa0362090:intron 40.0%
GAGTATAGAGAATGAAAGCG+AGG + chr3_1:52920286-52920305 Msa0362090:intron 40.0%
CGTTAGCGCAATTAACAGAT+CGG + chr3_1:52920725-52920744 Msa0362090:intron 40.0%
GTCGTTGAAAAGTGAAGCTT+CGG - chr3_1:52921665-52921684 None:intergenic 40.0%
! ACTTTTCAACGACATAGCCT+CGG + chr3_1:52921672-52921691 Msa0362090:intron 40.0%
CAAACCTCGATTTAGGTCTA+GGG - chr3_1:52921910-52921929 None:intergenic 40.0%
TCAAACCTCGATTTAGGTCT+AGG - chr3_1:52921911-52921930 None:intergenic 40.0%
GATTGAGACATCAAAAACCC+TGG + chr3_1:52921929-52921948 Msa0362090:intron 40.0%
! ATTTATAGCGGAAACGGTAG+TGG + chr3_1:52922051-52922070 Msa0362090:intron 40.0%
TATCTTCCATATCTTCCGGT+TGG - chr3_1:52922612-52922631 None:intergenic 40.0%
TACGATGAATTACTTGGAGC+TGG + chr3_1:52922630-52922649 Msa0362090:intron 40.0%
TTACAGTGTTTGGAGAGACA+AGG + chr3_1:52922818-52922837 Msa0362090:intron 40.0%
CACACTGAATTTCATCACAG+AGG + chr3_1:52922848-52922867 Msa0362090:intron 40.0%
ATCACAGAGGTTTGTACAAG+TGG + chr3_1:52922861-52922880 Msa0362090:intron 40.0%
TCACAGAGGTTTGTACAAGT+GGG + chr3_1:52922862-52922881 Msa0362090:intron 40.0%
TTAGGTTTGGCAGCAATTGT+GGG + chr3_1:52923158-52923177 Msa0362090:CDS 40.0%
TTTAGCAATTCCTCAGCAGA+AGG - chr3_1:52923458-52923477 None:intergenic 40.0%
TTCTGCTGAGGAATTGCTAA+AGG + chr3_1:52923457-52923476 Msa0362090:CDS 40.0%
CAGCTTCTACCCAAAGCATA+AGG + chr3_1:52918686-52918705 Msa0362090:intron 45.0%
GATGTGTTGGATGAGACTCA+TGG - chr3_1:52918767-52918786 None:intergenic 45.0%
AAACTGTAACACCCACAACG+TGG + chr3_1:52918789-52918808 Msa0362090:intron 45.0%
GATATCGAAAGCCACGTTGT+GGG - chr3_1:52918803-52918822 None:intergenic 45.0%
AACCTTTCGTATCCAACTGG+CGG - chr3_1:52918826-52918845 None:intergenic 45.0%
TCGGTTCCTCTTATTACCGT+GGG - chr3_1:52918886-52918905 None:intergenic 45.0%
TTCGGTTCCTCTTATTACCG+TGG - chr3_1:52918887-52918906 None:intergenic 45.0%
CCTCTCATTCCGATGTGATT+CGG - chr3_1:52918905-52918924 None:intergenic 45.0%
CGAATCACATCGGAATGAGA+GGG + chr3_1:52918903-52918922 Msa0362090:intron 45.0%
CGTGTAGGTATGAGACTACA+TGG + chr3_1:52918936-52918955 Msa0362090:intron 45.0%
GCTTAACTGTGGAGCTCTTA+TGG - chr3_1:52919036-52919055 None:intergenic 45.0%
GCTTGGAGTAGTACTAGGAT+GGG + chr3_1:52919063-52919082 Msa0362090:intron 45.0%
CATGCTGAAAAGACTCGTGT+TGG + chr3_1:52919132-52919151 Msa0362090:intron 45.0%
!! AAGACTCGTGTTGGTTTGTG+GGG + chr3_1:52919141-52919160 Msa0362090:intron 45.0%
!! TGTTGGTTTGTGGGGTTAGT+CGG + chr3_1:52919149-52919168 Msa0362090:intron 45.0%
TAACATCCCAGACTGCTTTC+AGG - chr3_1:52919179-52919198 None:intergenic 45.0%
! GCAGTCTGGGATGTTACAAA+TGG + chr3_1:52919183-52919202 Msa0362090:intron 45.0%
GATATCGAAAGCCACGTTGT+GGG - chr3_1:52918803-52918822 None:intergenic 45.0%
AACCTTTCGTATCCAACTGG+CGG - chr3_1:52918826-52918845 None:intergenic 45.0%
TCGGTTCCTCTTATTACCGT+GGG - chr3_1:52918886-52918905 None:intergenic 45.0%
TTCGGTTCCTCTTATTACCG+TGG - chr3_1:52918887-52918906 None:intergenic 45.0%
CCTCTCATTCCGATGTGATT+CGG - chr3_1:52918905-52918924 None:intergenic 45.0%
CGAATCACATCGGAATGAGA+GGG + chr3_1:52918903-52918922 Msa0362090:intron 45.0%
CGTGTAGGTATGAGACTACA+TGG + chr3_1:52918936-52918955 Msa0362090:intron 45.0%
GCTTGGAGTAGTACTAGGAT+GGG + chr3_1:52919063-52919082 Msa0362090:intron 45.0%
CATGCTGAAAAGACTCGTGT+TGG + chr3_1:52919132-52919151 Msa0362090:intron 45.0%
!! AAGACTCGTGTTGGTTTGTG+GGG + chr3_1:52919141-52919160 Msa0362090:intron 45.0%
!! TGTTGGTTTGTGGGGTTAGT+CGG + chr3_1:52919149-52919168 Msa0362090:intron 45.0%
GGCAATCCTGAAAGTAGTCT+GGG + chr3_1:52919648-52919667 Msa0362090:intron 45.0%
TTGCAAATATGGGACACAGC+AGG - chr3_1:52920018-52920037 None:intergenic 45.0%
AAGCAAAGAGGGAACAAGGA+AGG + chr3_1:52920232-52920251 Msa0362090:intron 45.0%
ATGAAAGCGAGGAGTTGTGA+TGG + chr3_1:52920297-52920316 Msa0362090:intron 45.0%
TAACACGGGAGAGGTTTAGT+AGG + chr3_1:52921365-52921384 Msa0362090:intron 45.0%
GGGAGAGGTTTAGTAGGTTA+CGG + chr3_1:52921371-52921390 Msa0362090:intron 45.0%
AGAGAGAGTGGAATGAACTG+AGG - chr3_1:52921631-52921650 None:intergenic 45.0%
TACCATGAAGTAGACAACCG+AGG - chr3_1:52921692-52921711 None:intergenic 45.0%
TGAACCCTAGACCTAAATCG+AGG + chr3_1:52921903-52921922 Msa0362090:intron 45.0%
GTTTCTGAGTCTTTGTCGGA+TGG - chr3_1:52922573-52922592 None:intergenic 45.0%
ACTGATCCAACCGGAAGATA+TGG + chr3_1:52922603-52922622 Msa0362090:intron 45.0%
! GTGGGAATTTGAGGGAGTAT+AGG + chr3_1:52922880-52922899 Msa0362090:intron 45.0%
TGTCAATGGAAATACTGGCC+AGG + chr3_1:52923031-52923050 Msa0362090:intron 45.0%
CTTAGGTTTGGCAGCAATTG+TGG + chr3_1:52923157-52923176 Msa0362090:CDS 45.0%
CATTCAGCGCATTCAGTTCT+AGG + chr3_1:52923188-52923207 Msa0362090:CDS 45.0%
TCTAGGCACACCGGAATTTA+TGG + chr3_1:52923205-52923224 Msa0362090:CDS 45.0%
!! AGCTCTGGTGCCATAAATTC+CGG - chr3_1:52923218-52923237 None:intergenic 45.0%
!! AAAAGTGTCTCGCTCAACCA+AGG + chr3_1:52923426-52923445 Msa0362090:CDS 45.0%
! AAAGTGTCTCGCTCAACCAA+GGG + chr3_1:52923427-52923446 Msa0362090:CDS 45.0%
!!! TAATATTTTAATATTTATAG+CGG + chr3_1:52922039-52922058 Msa0362090:intron 5.0%
!!! ATTATTATTATTTTACTTTT+TGG + chr3_1:52922470-52922489 Msa0362090:intron 5.0%
TGGCTATCCCTAACTTCTGC+TGG + chr3_1:52918716-52918735 Msa0362090:intron 50.0%
CTATCCCTAACTTCTGCTGG+TGG + chr3_1:52918719-52918738 Msa0362090:intron 50.0%
TGGACCACCAGCAGAAGTTA+GGG - chr3_1:52918726-52918745 None:intergenic 50.0%
GGATATCGAAAGCCACGTTG+TGG - chr3_1:52918804-52918823 None:intergenic 50.0%
ACCTTTCGTATCCAACTGGC+GGG - chr3_1:52918825-52918844 None:intergenic 50.0%
GGGAACCTTTCGTATCCAAC+TGG - chr3_1:52918829-52918848 None:intergenic 50.0%
TATCCGTAAGGATGACCCCA+CGG + chr3_1:52918867-52918886 Msa0362090:intron 50.0%
TTACCGTGGGGTCATCCTTA+CGG - chr3_1:52918873-52918892 None:intergenic 50.0%
GATGACCCCACGGTAATAAG+AGG + chr3_1:52918877-52918896 Msa0362090:intron 50.0%
CGGTTCCTCTTATTACCGTG+GGG - chr3_1:52918885-52918904 None:intergenic 50.0%
CCGAATCACATCGGAATGAG+AGG + chr3_1:52918902-52918921 Msa0362090:intron 50.0%
AAGCCAAGCACGCTTAACTG+TGG - chr3_1:52919047-52919066 None:intergenic 50.0%
ACAGTTAAGCGTGCTTGGCT+TGG + chr3_1:52919046-52919065 Msa0362090:intron 50.0%
!! GCTTGGCTTGGAGTAGTACT+AGG + chr3_1:52919058-52919077 Msa0362090:intron 50.0%
GGCTTGGAGTAGTACTAGGA+TGG + chr3_1:52919062-52919081 Msa0362090:intron 50.0%
TACTAGGATGGGTGACCTAC+CGG + chr3_1:52919074-52919093 Msa0362090:intron 50.0%
ATGCTTACCGGGAAACTTCC+CGG - chr3_1:52919096-52919115 None:intergenic 50.0%
TCCTCACTCACATGCTTACC+GGG - chr3_1:52919107-52919126 None:intergenic 50.0%
GTCCTCACTCACATGCTTAC+CGG - chr3_1:52919108-52919127 None:intergenic 50.0%
GGCAATCCTGAAAGCAGTCT+GGG + chr3_1:52919170-52919189 Msa0362090:intron 50.0%
GGATATCGAAAGCCACGTTG+TGG - chr3_1:52918804-52918823 None:intergenic 50.0%
ACCTTTCGTATCCAACTGGC+GGG - chr3_1:52918825-52918844 None:intergenic 50.0%
GGGAACCTTTCGTATCCAAC+TGG - chr3_1:52918829-52918848 None:intergenic 50.0%
TATCCGTAAGGATGACCCCA+CGG + chr3_1:52918867-52918886 Msa0362090:intron 50.0%
TTACCGTGGGGTCATCCTTA+CGG - chr3_1:52918873-52918892 None:intergenic 50.0%
GATGACCCCACGGTAATAAG+AGG + chr3_1:52918877-52918896 Msa0362090:intron 50.0%
CGGTTCCTCTTATTACCGTG+GGG - chr3_1:52918885-52918904 None:intergenic 50.0%
CCGAATCACATCGGAATGAG+AGG + chr3_1:52918902-52918921 Msa0362090:intron 50.0%
ACTCCACAGTTAAGCGTGCT+TGG + chr3_1:52919519-52919538 Msa0362090:intron 50.0%
AAGCCAAGCACGCTTAACTG+TGG - chr3_1:52919047-52919066 None:intergenic 50.0%
ACAGTTAAGCGTGCTTGGCT+TGG + chr3_1:52919046-52919065 Msa0362090:intron 50.0%
!! GCTTGGCTTGGAGTAGTACT+AGG + chr3_1:52919058-52919077 Msa0362090:intron 50.0%
GGCTTGGAGTAGTACTAGGA+TGG + chr3_1:52919062-52919081 Msa0362090:intron 50.0%
TACTAGGATGGGTGACCTAC+CGG + chr3_1:52919074-52919093 Msa0362090:intron 50.0%
ATGCTTACCGGGAAACTTCC+CGG - chr3_1:52919096-52919115 None:intergenic 50.0%
TCCTCACTCACATGCTTACC+GGG - chr3_1:52919107-52919126 None:intergenic 50.0%
GTCCTCACTCACATGCTTAC+CGG - chr3_1:52919108-52919127 None:intergenic 50.0%
CGGCAATCCTGAAAGTAGTC+TGG + chr3_1:52919647-52919666 Msa0362090:intron 50.0%
TGACACCAATTGTTGCGTCG+TGG + chr3_1:52920082-52920101 Msa0362090:intron 50.0%
ATAATCGGCGACATGGGAGT+CGG - chr3_1:52920156-52920175 None:intergenic 50.0%
AGCCTCGGTTGTCTACTTCA+TGG + chr3_1:52921687-52921706 Msa0362090:intron 50.0%
!! GCATTCAGTTCTAGGCACAC+CGG + chr3_1:52923196-52923215 Msa0362090:CDS 50.0%
GGCACCAGAGCTATATGAAG+AGG + chr3_1:52923226-52923245 Msa0362090:CDS 50.0%
GTGGACCACCAGCAGAAGTT+AGG - chr3_1:52918727-52918746 None:intergenic 55.0%
GCTTTCGATATCCCGCCAGT+TGG + chr3_1:52918811-52918830 Msa0362090:intron 55.0%
TCCCGCCAGTTGGATACGAA+AGG + chr3_1:52918821-52918840 Msa0362090:intron 55.0%
TACGAAAGGTTCCCGCCAGT+TGG + chr3_1:52918835-52918854 Msa0362090:intron 55.0%
AAGGTTCCCGCCAGTTGGAA+CGG + chr3_1:52918840-52918859 Msa0362090:intron 55.0%
ATAGTGCCCGTTCCAACTGG+CGG - chr3_1:52918850-52918869 None:intergenic 55.0%
TGGAACGGGCACTATCCGTA+AGG + chr3_1:52918855-52918874 Msa0362090:intron 55.0%
TCGGAATGAGAGGGATCCAG+AGG + chr3_1:52918912-52918931 Msa0362090:intron 55.0%
TCTCATACCTACACGGCCTC+TGG - chr3_1:52918931-52918950 None:intergenic 55.0%
GCTCCACAGTTAAGCGTGCT+TGG + chr3_1:52919041-52919060 Msa0362090:intron 55.0%
ACTAGGATGGGTGACCTACC+GGG + chr3_1:52919075-52919094 Msa0362090:intron 55.0%
TGACCTACCGGGAAGTTTCC+CGG + chr3_1:52919086-52919105 Msa0362090:intron 55.0%
TTACCGGGAAACTTCCCGGT+AGG - chr3_1:52919092-52919111 None:intergenic 55.0%
TCCCGGTAAGCATGTGAGTG+AGG + chr3_1:52919103-52919122 Msa0362090:intron 55.0%
CGGCAATCCTGAAAGCAGTC+TGG + chr3_1:52919169-52919188 Msa0362090:intron 55.0%
AGAGCAGACCTCTCCCAGTA+CGG + chr3_1:52919210-52919229 Msa0362090:intron 55.0%
TCTCCCAGTACGGTGTGGTT+CGG + chr3_1:52919220-52919239 Msa0362090:intron 55.0%
GGCATGTAACACCCACAACG+TGG + chr3_1:52919267-52919286 Msa0362090:intron 55.0%
GCTTTCGATATCCCGCCAGT+TGG + chr3_1:52918811-52918830 Msa0362090:intron 55.0%
TCCCGCCAGTTGGATACGAA+AGG + chr3_1:52918821-52918840 Msa0362090:intron 55.0%
TACGAAAGGTTCCCGCCAGT+TGG + chr3_1:52918835-52918854 Msa0362090:intron 55.0%
AAGGTTCCCGCCAGTTGGAA+CGG + chr3_1:52918840-52918859 Msa0362090:intron 55.0%
ATAGTGCCCGTTCCAACTGG+CGG - chr3_1:52918850-52918869 None:intergenic 55.0%
TGGAACGGGCACTATCCGTA+AGG + chr3_1:52918855-52918874 Msa0362090:intron 55.0%
TCGGAATGAGAGGGATCCAG+AGG + chr3_1:52918912-52918931 Msa0362090:intron 55.0%
TCTCATACCTACACGGCCTC+TGG - chr3_1:52918931-52918950 None:intergenic 55.0%
ACTAGGATGGGTGACCTACC+GGG + chr3_1:52919075-52919094 Msa0362090:intron 55.0%
TGACCTACCGGGAAGTTTCC+CGG + chr3_1:52919086-52919105 Msa0362090:intron 55.0%
TTACCGGGAAACTTCCCGGT+AGG - chr3_1:52919092-52919111 None:intergenic 55.0%
TCCCGGTAAGCATGTGAGTG+AGG + chr3_1:52919103-52919122 Msa0362090:intron 55.0%
!! CGTGTGGTGAGTACCGAAGA+AGG - chr3_1:52919808-52919827 None:intergenic 55.0%
CGATCTCGCTGGTAATCGTG+TGG - chr3_1:52919824-52919843 None:intergenic 55.0%
GGAAACAAGAGCGATCTCGC+TGG - chr3_1:52919835-52919854 None:intergenic 55.0%
CGCTTCCACGACGCAACAAT+TGG - chr3_1:52920090-52920109 None:intergenic 55.0%
!! CGTCGTGGAAGCGTTGAAAG+CGG + chr3_1:52920097-52920116 Msa0362090:intron 55.0%
TCAGCAGAAGGTCTAGCCCT+TGG - chr3_1:52923446-52923465 None:intergenic 55.0%
AAGGGCTAGACCTTCTGCTG+AGG + chr3_1:52923445-52923464 Msa0362090:CDS 55.0%
AGGTTCCCGCCAGTTGGAAC+GGG + chr3_1:52918841-52918860 Msa0362090:intron 60.0%
TAGTGCCCGTTCCAACTGGC+GGG - chr3_1:52918849-52918868 None:intergenic 60.0%
CGGATAGTGCCCGTTCCAAC+TGG - chr3_1:52918853-52918872 None:intergenic 60.0%
AGACCTCTCCCAGTACGGTG+TGG + chr3_1:52919215-52919234 Msa0362090:intron 60.0%
GAACCACACCGTACTGGGAG+AGG - chr3_1:52919221-52919240 None:intergenic 60.0%
CTCCCAGTACGGTGTGGTTC+GGG + chr3_1:52919221-52919240 Msa0362090:intron 60.0%
TCCCAGTACGGTGTGGTTCG+GGG + chr3_1:52919222-52919241 Msa0362090:intron 60.0%
TCCCCGAACCACACCGTACT+GGG - chr3_1:52919226-52919245 None:intergenic 60.0%
AGGTTCCCGCCAGTTGGAAC+GGG + chr3_1:52918841-52918860 Msa0362090:intron 60.0%
TAGTGCCCGTTCCAACTGGC+GGG - chr3_1:52918849-52918868 None:intergenic 60.0%
CGGATAGTGCCCGTTCCAAC+TGG - chr3_1:52918853-52918872 None:intergenic 60.0%
GAGGGATCCAGAGGCCGTGT+AGG + chr3_1:52918921-52918940 Msa0362090:intron 65.0%
GTCCCCGAACCACACCGTAC+TGG - chr3_1:52919227-52919246 None:intergenic 65.0%
! GTGTGGTTCGGGGACGAACC+AGG + chr3_1:52919232-52919251 Msa0362090:intron 65.0%
! TGGTTCGGGGACGAACCAGG+CGG + chr3_1:52919235-52919254 Msa0362090:intron 65.0%
ACGAACCAGGCGGAAGCTGG+TGG + chr3_1:52919245-52919264 Msa0362090:intron 65.0%
CGAACCAGGCGGAAGCTGGT+GGG + chr3_1:52919246-52919265 Msa0362090:intron 65.0%
GAGGGATCCAGAGGCCGTGT+AGG + chr3_1:52918921-52918940 Msa0362090:intron 65.0%
GGGACGAACCAGGCGGAAGC+TGG + chr3_1:52919242-52919261 Msa0362090:intron 70.0%
CATGCCCACCAGCTTCCGCC+TGG - chr3_1:52919253-52919272 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 52918645 52923499 52918645 ID=Msa0362090;Name=Msa0362090
chr3_1 mRNA 52918645 52923499 52918645 ID=Msa0362090-mRNA-1;Parent=Msa0362090;Name=Msa0362090-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|0.2|1|1|5|0|127
chr3_1 exon 52918645 52918650 52918645 ID=Msa0362090-mRNA-1:exon:9593;Parent=Msa0362090-mRNA-1
chr3_1 exon 52921618 52921623 52921618 ID=Msa0362090-mRNA-1:exon:9594;Parent=Msa0362090-mRNA-1
chr3_1 exon 52921873 52921879 52921873 ID=Msa0362090-mRNA-1:exon:9595;Parent=Msa0362090-mRNA-1
chr3_1 exon 52922059 52922066 52922059 ID=Msa0362090-mRNA-1:exon:9596;Parent=Msa0362090-mRNA-1
chr3_1 exon 52923143 52923499 52923143 ID=Msa0362090-mRNA-1:exon:9597;Parent=Msa0362090-mRNA-1
chr3_1 CDS 52918645 52918650 52918645 ID=Msa0362090-mRNA-1:cds;Parent=Msa0362090-mRNA-1
chr3_1 CDS 52921618 52921623 52921618 ID=Msa0362090-mRNA-1:cds;Parent=Msa0362090-mRNA-1
chr3_1 CDS 52921873 52921879 52921873 ID=Msa0362090-mRNA-1:cds;Parent=Msa0362090-mRNA-1
chr3_1 CDS 52922059 52922066 52922059 ID=Msa0362090-mRNA-1:cds;Parent=Msa0362090-mRNA-1
chr3_1 CDS 52923143 52923499 52923143 ID=Msa0362090-mRNA-1:cds;Parent=Msa0362090-mRNA-1
Gene Sequence

>Msa0362090

ATGAATTTTTTGTGTGTTACGGAAACGGTTAAGATTGGTGACTTAGGTTTGGCAGCAATTGTGGGAAAGAATCATTCAGCGCATTCAGTTCTAGGCACACCGGAATTTATGGCACCAGAGCTATATGAAGAGGATTACACAGAAATGGTAGACATATACTCATTTGGAATGTTAGTATTAGAGATGGTGACACTAGAGATTCCATATAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGACTTCAGGTGTGAGACCGCAATCCTTGAACAAGATAAAAGATGTAGAAGTGAAGACTTTCATCGAAAAGTGTCTCGCTCAACCAAGGGCTAGACCTTCTGCTGAGGAATTGCTAAAGGATCCTTTTTTGATGATGTAG
Protein sequence

>Msa0362090

MNFLCVTETVKIGDLGLAAIVGKNHSAHSVLGTPEFMAPELYEEDYTEMVDIYSFGMLVLEMVTLEIPYSECDNVAKIYKKVTSGVRPQSLNKIKDVEVKTFIEKCLAQPRARPSAEELLKDPFLMM*