AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0362130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362130 MtrunA17_Chr3g0101091 95.455 132 6 0 24 155 166 297 6.26e-89 261
Msa0362130 MtrunA17_Chr3g0101081 95.455 132 6 0 24 155 166 297 6.26e-89 261
Msa0362130 MtrunA17_Chr3g0101111 95.420 131 6 0 24 154 166 296 2.59e-88 259
Msa0362130 MtrunA17_Chr7g0225201 88.550 131 15 0 24 154 167 297 1.98e-80 239
Msa0362130 MtrunA17_Chr3g0132681 86.822 129 17 0 24 152 167 295 9.22e-78 233
Msa0362130 MtrunA17_Chr5g0445271 86.207 116 16 0 27 142 170 285 3.22e-71 216
Msa0362130 MtrunA17_Chr5g0447731 77.236 123 28 0 27 149 166 288 5.33e-68 207
Msa0362130 MtrunA17_Chr7g0273851 68.548 124 36 2 27 148 167 289 2.46e-49 168
Msa0362130 MtrunA17_Chr1g0190951 66.935 124 38 2 27 148 167 289 7.19e-48 164
Msa0362130 MtrunA17_Chr1g0205471 67.742 124 36 3 27 148 167 288 1.99e-46 160
Msa0362130 MtrunA17_Chr7g0244601 59.836 122 49 0 27 148 171 292 2.33e-46 159
Msa0362130 MtrunA17_Chr5g0432541 63.793 116 42 0 27 142 170 285 2.71e-45 155
Msa0362130 MtrunA17_Chr3g0129771 63.248 117 42 1 27 143 176 291 7.36e-45 155
Msa0362130 MtrunA17_Chr8g0384001 60.000 115 45 1 27 141 171 284 4.38e-42 147
Msa0362130 MtrunA17_Chr8g0346511 69.828 116 34 1 27 142 181 295 2.01e-41 146
Msa0362130 MtrunA17_Chr3g0116811 66.379 116 39 0 27 142 169 284 4.08e-40 142
Msa0362130 MtrunA17_Chr6g0455931 65.517 116 40 0 27 142 172 287 6.80e-40 141
Msa0362130 MtrunA17_Chr3g0119911 67.241 116 37 1 27 142 163 277 1.06e-39 140
Msa0362130 MtrunA17_Chr4g0013051 63.115 122 45 0 27 148 167 288 1.20e-39 140
Msa0362130 MtrunA17_Chr1g0202831 38.983 118 68 3 27 141 550 666 3.70e-17 77.4
Msa0362130 MtrunA17_Chr3g0130151 36.364 121 73 3 27 144 383 502 4.85e-17 77.0
Msa0362130 MtrunA17_Chr8g0384301 35.484 124 70 4 27 144 438 557 5.93e-15 71.2
Msa0362130 MtrunA17_Chr4g0025041 36.290 124 73 5 25 145 132 252 2.37e-14 69.3
Msa0362130 MtrunA17_Chr4g0041201 33.094 139 82 5 14 147 668 800 3.17e-14 68.9
Msa0362130 MtrunA17_Chr8g0386981 35.593 118 72 3 27 141 547 663 3.75e-14 68.9
Msa0362130 MtrunA17_Chr4g0051191 35.338 133 73 6 20 142 288 417 5.29e-14 68.2
Msa0362130 MtrunA17_Chr2g0299991 31.724 145 75 6 27 151 206 346 7.69e-13 64.7
Msa0362130 MtrunA17_Chr8g0375141 35.156 128 70 6 27 146 181 303 9.10e-13 64.7
Msa0362130 MtrunA17_Chr5g0406251 29.915 117 79 3 24 138 427 542 9.17e-13 64.7
Msa0362130 MtrunA17_Chr5g0424501 34.167 120 72 5 26 141 328 444 1.30e-12 64.3
Msa0362130 MtrunA17_Chr4g0052981 34.646 127 70 6 27 145 142 263 3.22e-12 62.8
Msa0362130 MtrunA17_Chr2g0310781 37.168 113 66 3 28 136 993 1104 4.29e-12 62.8
Msa0362130 MtrunA17_Chr5g0427651 34.677 124 70 5 27 140 785 907 6.92e-12 62.4
Msa0362130 MtrunA17_Chr1g0196631 37.963 108 62 3 28 131 1048 1154 8.94e-12 62.0
Msa0362130 MtrunA17_Chr3g0115171 34.028 144 75 7 11 142 401 536 1.29e-11 61.2
Msa0362130 MtrunA17_Chr1g0179331 34.783 115 71 4 26 137 693 806 1.35e-11 61.6
Msa0362130 MtrunA17_Chr8g0357611 36.283 113 67 3 28 136 1518 1629 2.37e-11 60.8
Msa0362130 MtrunA17_Chr4g0025671 33.898 118 74 3 27 142 147 262 3.59e-11 60.1
Msa0362130 MtrunA17_Chr1g0173921 29.139 151 94 5 3 142 110 258 4.46e-11 60.1
Msa0362130 MtrunA17_Chr1g0185221 33.051 118 75 3 25 140 141 256 6.41e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362130 AT5G55560.1 78.992 119 25 0 27 145 174 292 6.74e-67 206
Msa0362130 AT3G48260.2 65.517 116 40 0 27 142 70 185 1.46e-49 164
Msa0362130 AT3G48260.1 65.517 116 40 0 27 142 165 280 7.65e-49 164
Msa0362130 AT3G04910.3 67.742 124 37 2 27 148 41 163 6.91e-48 163
Msa0362130 AT3G04910.2 67.742 124 37 2 27 148 144 266 1.71e-47 163
Msa0362130 AT3G04910.1 67.742 124 37 2 27 148 167 289 1.95e-47 163
Msa0362130 AT3G51630.1 65.517 116 40 0 27 142 168 283 4.04e-45 155
Msa0362130 AT3G51630.2 65.517 116 40 0 27 142 168 283 4.04e-45 155
Msa0362130 AT1G49160.7 64.103 117 41 1 27 143 44 159 8.37e-45 152
Msa0362130 AT1G49160.6 64.103 117 41 1 27 143 44 159 8.37e-45 152
Msa0362130 AT1G49160.4 64.103 117 41 1 27 143 44 159 8.37e-45 152
Msa0362130 AT3G18750.4 63.793 116 41 1 27 142 153 267 1.06e-44 154
Msa0362130 AT3G18750.1 63.793 116 41 1 27 142 171 285 1.95e-44 153
Msa0362130 AT3G18750.3 63.793 116 41 1 27 142 171 285 1.95e-44 153
Msa0362130 AT3G18750.5 63.793 116 41 1 27 142 171 285 1.95e-44 153
Msa0362130 AT5G58350.1 59.483 116 47 0 27 142 162 277 2.48e-44 153
Msa0362130 AT1G49160.1 64.103 117 41 1 27 143 153 268 3.06e-44 152
Msa0362130 AT5G28080.4 63.793 116 41 1 27 142 82 196 5.09e-44 149
Msa0362130 AT5G28080.3 63.793 116 41 1 27 142 82 196 5.09e-44 149
Msa0362130 AT5G28080.5 63.793 116 41 1 27 142 82 196 5.09e-44 149
Msa0362130 AT5G28080.6 63.793 116 41 1 27 142 82 196 5.09e-44 149
Msa0362130 AT5G28080.7 63.793 116 41 1 27 142 82 196 5.09e-44 149
Msa0362130 AT1G49160.3 64.103 117 41 1 27 143 218 333 5.30e-44 151
Msa0362130 AT1G49160.2 64.103 117 41 1 27 143 171 286 5.90e-44 152
Msa0362130 AT3G22420.1 60.656 122 47 1 27 148 167 287 8.15e-44 152
Msa0362130 AT3G22420.4 60.656 122 47 1 27 148 238 358 8.52e-44 152
Msa0362130 AT3G22420.3 60.656 122 47 1 27 148 238 358 1.02e-43 152
Msa0362130 AT3G22420.5 60.656 122 47 1 27 148 167 287 1.06e-43 152
Msa0362130 AT5G28080.8 63.793 116 41 1 27 142 131 245 1.25e-43 149
Msa0362130 AT1G49160.5 64.103 117 41 1 27 143 218 333 1.30e-43 152
Msa0362130 AT5G28080.2 63.793 116 41 1 27 142 168 282 2.32e-43 149
Msa0362130 AT1G64630.1 66.387 119 39 1 24 142 156 273 1.35e-40 142
Msa0362130 AT5G41990.1 56.849 146 50 3 9 142 142 286 8.00e-40 141
Msa0362130 AT3G22420.6 48.366 153 48 1 27 148 167 319 3.85e-39 139
Msa0362130 AT3G22420.2 48.366 153 48 1 27 148 167 319 3.99e-39 139
Msa0362130 AT5G28080.1 61.798 89 34 0 54 142 1 89 2.39e-31 114
Msa0362130 AT1G53570.6 36.975 119 71 3 27 142 353 470 3.72e-17 77.8
Msa0362130 AT1G53570.7 36.975 119 71 3 27 142 353 470 3.72e-17 77.8
Msa0362130 AT1G53570.4 36.975 119 71 3 27 142 353 470 3.86e-17 77.8
Msa0362130 AT1G53570.2 36.975 119 71 3 27 142 353 470 3.86e-17 77.8
Msa0362130 AT1G53570.3 36.975 119 71 3 27 142 353 470 3.86e-17 77.8
Msa0362130 AT1G53570.1 36.975 119 71 3 27 142 353 470 3.86e-17 77.8
Msa0362130 AT1G53570.5 35.833 120 66 4 33 142 326 444 1.11e-14 70.5
Msa0362130 AT2G31010.1 33.813 139 81 5 14 147 640 772 5.65e-14 68.6
Msa0362130 AT2G31010.2 33.813 139 81 5 14 147 640 772 5.65e-14 68.6
Msa0362130 AT4G08480.1 37.594 133 69 6 20 141 625 754 1.17e-13 67.8
Msa0362130 AT1G63700.1 34.426 122 76 3 27 145 539 659 2.17e-13 67.0
Msa0362130 AT1G63700.2 34.426 122 76 3 27 145 539 659 2.17e-13 67.0
Msa0362130 AT2G42640.1 34.375 128 76 4 14 137 647 770 3.14e-13 66.6
Msa0362130 AT2G42640.4 34.375 128 76 4 14 137 609 732 3.67e-13 66.2
Msa0362130 AT3G20860.1 34.454 119 74 3 27 143 142 258 1.33e-12 64.7
Msa0362130 AT4G12020.2 35.714 126 64 6 26 143 1762 1878 1.51e-12 64.7
Msa0362130 AT4G12020.5 35.714 126 64 6 26 143 1687 1803 1.59e-12 64.7
Msa0362130 AT4G12020.4 35.714 126 64 6 26 143 1754 1870 1.64e-12 64.7
Msa0362130 AT1G54510.4 31.507 146 83 6 8 140 115 256 2.35e-12 63.9
Msa0362130 AT1G54510.2 31.507 146 83 6 8 140 115 256 2.35e-12 63.9
Msa0362130 AT1G54510.1 31.507 146 83 6 8 140 115 256 2.35e-12 63.9
Msa0362130 AT1G54510.3 31.507 146 83 6 8 140 115 256 2.35e-12 63.9
Msa0362130 AT5G49470.1 35.593 118 68 6 26 138 340 454 4.38e-12 63.2
Msa0362130 AT5G49470.7 35.593 118 68 6 26 138 500 614 4.64e-12 63.2
Msa0362130 AT5G49470.4 35.593 118 68 6 26 138 601 715 4.75e-12 63.2
Msa0362130 AT5G49470.3 35.593 118 68 6 26 138 627 741 4.77e-12 63.2
Msa0362130 AT5G49470.2 35.593 118 68 6 26 138 688 802 4.82e-12 63.2
Msa0362130 AT1G79570.2 37.168 113 66 3 28 136 1112 1223 7.52e-12 62.8
Msa0362130 AT1G79570.1 37.168 113 66 3 28 136 1112 1223 7.52e-12 62.8
Msa0362130 AT5G28290.3 31.148 122 76 4 25 142 141 258 9.11e-12 62.4
Msa0362130 AT5G28290.1 31.148 122 76 4 25 142 141 258 9.34e-12 62.4
Msa0362130 AT5G28290.2 31.148 122 76 4 25 142 141 258 9.34e-12 62.4
Msa0362130 AT4G08470.3 34.014 147 80 7 9 141 331 474 9.43e-12 62.0
Msa0362130 AT4G08470.1 34.014 147 80 7 9 141 413 556 9.96e-12 62.0
Msa0362130 AT2G24360.1 31.897 116 76 3 25 138 268 382 1.06e-11 62.0
Msa0362130 AT3G63280.4 29.452 146 86 6 8 140 169 310 2.06e-11 61.2
Msa0362130 AT3G63280.2 29.452 146 86 6 8 140 115 256 2.06e-11 61.2
Msa0362130 AT3G63280.3 29.452 146 86 6 8 140 115 256 2.06e-11 61.2
Msa0362130 AT3G63280.1 29.452 146 86 6 8 140 115 256 2.06e-11 61.2
Msa0362130 AT3G04810.2 30.328 122 77 4 25 142 141 258 2.85e-11 60.8
Msa0362130 AT3G04810.1 30.328 122 77 4 25 142 141 258 2.85e-11 60.8
Msa0362130 AT3G04810.3 30.328 122 77 4 25 142 141 258 2.85e-11 60.8
Msa0362130 AT1G53165.3 31.967 122 77 4 27 144 150 269 3.67e-11 60.5
Msa0362130 AT1G53165.1 31.967 122 77 4 27 144 150 269 3.70e-11 60.5
Msa0362130 AT1G53165.2 31.967 122 77 4 27 144 150 269 3.74e-11 60.5
Msa0362130 AT5G03730.2 35.455 110 67 4 26 132 689 797 3.76e-11 60.5
Msa0362130 AT5G03730.1 35.455 110 67 4 26 132 689 797 3.76e-11 60.5
Msa0362130 AT1G69220.2 31.707 123 75 5 27 143 358 477 5.31e-11 60.1
Msa0362130 AT1G72180.1 32.609 138 70 7 28 146 829 962 5.53e-11 60.1
Msa0362130 AT1G69220.1 31.707 123 75 5 27 143 385 504 6.84e-11 59.7
Msa0362130 AT4G35780.1 30.172 116 78 3 25 138 425 539 8.44e-11 59.3

Find 27 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGCGCATTCAGTTCT+AGG 0.181449 3_1:-52972674 Msa0362130:CDS
TCTAGGCACACCGGAATTTA+TGG 0.201363 3_1:-52972657 Msa0362130:CDS
TACAGAACTGTATTCAATTT+AGG 0.241190 3_1:-52974081 Msa0362130:intron
ACATTGTCACATTCACTATA+TGG 0.341582 3_1:+52972545 None:intergenic
AATGTATATTAGGTTAAGAT+TGG 0.380565 3_1:-52972731 Msa0362130:intron
ATGGTAGACATATACTCATT+TGG 0.414002 3_1:-52972602 Msa0362130:CDS
CTTAGGTTTGGCAGCAATTG+TGG 0.415298 3_1:-52972705 Msa0362130:CDS
TTTAATATTTATAGCGGAAA+CGG 0.446178 3_1:-52973817 Msa0362130:intron
ATATACAAGAAGGTGACTTC+AGG 0.446476 3_1:-52972515 Msa0362130:CDS
TAGGTTAAGATTGGTGACTT+AGG 0.448927 3_1:-52972722 Msa0362130:CDS
TAAGATTGGTGACTTAGGTT+TGG 0.458074 3_1:-52972717 Msa0362130:CDS
AGCTCTGGTGCCATAAATTC+CGG 0.461898 3_1:+52972647 None:intergenic
TAATCCTCTTCATATAGCTC+TGG 0.477445 3_1:+52972632 None:intergenic
TGAAGAGGATTACACAGAAA+TGG 0.479001 3_1:-52972621 Msa0362130:CDS
TCAGCAGAAGGTCTAGCCCT+TGG 0.491026 3_1:+52972419 None:intergenic
TTAGGTTTGGCAGCAATTGT+GGG 0.502201 3_1:-52972704 Msa0362130:CDS
TTTATCTTGTTCAAGGATTG+CGG 0.530284 3_1:+52972485 None:intergenic
TTCTGCTGAGGAATTGCTAA+AGG 0.536575 3_1:-52972405 Msa0362130:CDS
TAGTAACAAGACCCAAATCA+AGG 0.542889 3_1:-52974043 Msa0362130:intron
TGGAATGTTAGTATTAGAGA+TGG 0.547641 3_1:-52972582 Msa0362130:CDS
AAAAGTGTCTCGCTCAACCA+AGG 0.579858 3_1:-52972436 Msa0362130:CDS
TTTAGCAATTCCTCAGCAGA+AGG 0.580675 3_1:+52972407 None:intergenic
TGTTGCAAAGATATACAAGA+AGG 0.609288 3_1:-52972525 Msa0362130:CDS
GGCACCAGAGCTATATGAAG+AGG 0.616021 3_1:-52972636 Msa0362130:CDS
AAAGTGTCTCGCTCAACCAA+GGG 0.644670 3_1:-52972435 Msa0362130:CDS
AAGGGCTAGACCTTCTGCTG+AGG 0.666215 3_1:-52972417 Msa0362130:CDS
GCATTCAGTTCTAGGCACAC+CGG 0.687251 3_1:-52972666 Msa0362130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTGTTATATTGT+TGG - chr3_1:52974339-52974358 Msa0362130:intron 10.0%
!!! ATATTATTTTGTTATATTGT+TGG - chr3_1:52974792-52974811 Msa0362130:intron 10.0%
!! TAACATTTCAAAATTATTAA+CGG + chr3_1:52974924-52974943 None:intergenic 10.0%
!!! TTTTTATTTTTTAACTTTGT+TGG - chr3_1:52975462-52975481 Msa0362130:intron 10.0%
!!! TATTTGTTTTAATGTATATT+AGG - chr3_1:52976829-52976848 Msa0362130:intron 10.0%
!! AAGTATATATAAAAAAATCC+AGG + chr3_1:52973399-52973418 None:intergenic 15.0%
!!! TTTTTTTTTAAGGATTAACT+AGG + chr3_1:52974129-52974148 None:intergenic 15.0%
!!! CTAGGTTTTTTTTTTTTTTA+AGG + chr3_1:52974139-52974158 None:intergenic 15.0%
!!! TTTATAATTTAAGATTAGCT+AGG + chr3_1:52974183-52974202 None:intergenic 15.0%
!! CAAAAAAAAAAGTTGTTTAA+GGG + chr3_1:52974745-52974764 None:intergenic 15.0%
!! ACAAAAAAAAAAGTTGTTTA+AGG + chr3_1:52974746-52974765 None:intergenic 15.0%
!! AAGAACAATTTCTTTAAATT+CGG - chr3_1:52974972-52974991 Msa0362130:intron 15.0%
!!! AAAAAGACTAAATTTTAACA+CGG - chr3_1:52975058-52975077 Msa0362130:intron 15.0%
!!! GGATAAATGTTAAATATTTT+TGG + chr3_1:52975216-52975235 None:intergenic 15.0%
!!! AATCAACAAACATTTTTAAA+AGG + chr3_1:52975904-52975923 None:intergenic 15.0%
!! ATATAAAAAAATCCAGGTTA+GGG + chr3_1:52973393-52973412 None:intergenic 20.0%
!! TATATAAAAAAATCCAGGTT+AGG + chr3_1:52973394-52973413 None:intergenic 20.0%
!!! TTCAATATTTTCTCTTGATT+TGG - chr3_1:52973442-52973461 Msa0362130:intron 20.0%
!!! TACTAGTTTATGATATAACA+AGG + chr3_1:52973646-52973665 None:intergenic 20.0%
!!! AGAGATTTGTATTTTTAAGT+AGG - chr3_1:52973967-52973986 Msa0362130:intron 20.0%
!!! TTTTTTAAGGAAGATTAACT+AGG + chr3_1:52974157-52974176 None:intergenic 20.0%
!!! ATTAGCTAGGTTTTTTTTTA+AGG + chr3_1:52974170-52974189 None:intergenic 20.0%
!! TTATTTGTATTGAAAGTTGA+GGG + chr3_1:52974565-52974584 None:intergenic 20.0%
!!! AAAAGACTAAATTTTAACAC+GGG - chr3_1:52975059-52975078 Msa0362130:intron 20.0%
!!! ATATTTTTGGAATTCAGTAT+TGG + chr3_1:52975203-52975222 None:intergenic 20.0%
!!! TATTTGATTTGATTCACATT+AGG + chr3_1:52975237-52975256 None:intergenic 20.0%
!! AAGTATATATACCCAAATTA+CGG + chr3_1:52975276-52975295 None:intergenic 20.0%
!! TAATTTGGGTATATATACTT+CGG - chr3_1:52975276-52975295 Msa0362130:intron 20.0%
!!! TTTTTCACATTTCTAGTTTT+TGG - chr3_1:52975310-52975329 Msa0362130:intron 20.0%
!!! AAGAGTTTTTGAATAATGAA+TGG + chr3_1:52975424-52975443 None:intergenic 20.0%
!! GAAATAAAAAACCTTGATTT+GGG + chr3_1:52975541-52975560 None:intergenic 20.0%
!! AGAAATAAAAAACCTTGATT+TGG + chr3_1:52975542-52975561 None:intergenic 20.0%
!! TATAACTTAATAGTTAGACT+TGG + chr3_1:52975726-52975745 None:intergenic 20.0%
!!! TTTAATATTTATAGCGGAAA+CGG - chr3_1:52975753-52975772 Msa0362130:intron 20.0%
!!! TTTTGTTCTTTGAAAATCAA+AGG - chr3_1:52975922-52975941 Msa0362130:intron 20.0%
!! AATGTATATTAGGTTAAGAT+TGG - chr3_1:52976839-52976858 Msa0362130:intron 20.0%
! GAAGACTTATAAGAATTGTT+AGG - chr3_1:52972672-52972691 Msa0362130:CDS 25.0%
! GAAGACTTATAAGAATTGTT+AGG - chr3_1:52972672-52972691 Msa0362130:CDS 25.0%
! ATCAAGAGAAAATATTGAAG+AGG + chr3_1:52973441-52973460 None:intergenic 25.0%
! GATATGATCATTATGTTGAT+CGG + chr3_1:52973563-52973582 None:intergenic 25.0%
! GCCTTCAAATACATAATAAT+CGG + chr3_1:52973878-52973897 None:intergenic 25.0%
! TTATTGTGAAAAAGCAAAGA+GGG - chr3_1:52973928-52973947 Msa0362130:intron 25.0%
! ATAACAAATCAATGTAACCA+TGG + chr3_1:52974383-52974402 None:intergenic 25.0%
! GTTATTTGTATTGAAAGTTG+AGG + chr3_1:52974566-52974585 None:intergenic 25.0%
! ATAGATGATCACGATTAATT+TGG - chr3_1:52974825-52974844 Msa0362130:intron 25.0%
! TACAGAACTGTATTCAATTT+AGG - chr3_1:52975489-52975508 Msa0362130:intron 25.0%
! ATTTATATGTTGAGACACTA+GGG + chr3_1:52975874-52975893 None:intergenic 25.0%
! AATTTATATGTTGAGACACT+AGG + chr3_1:52975875-52975894 None:intergenic 25.0%
! TAATTCGTTTATTGTTGAAG+AGG - chr3_1:52976005-52976024 Msa0362130:intron 25.0%
!!! AAAGCATTTGATAATGAAGA+AGG - chr3_1:52976380-52976399 Msa0362130:intron 25.0%
!! ACATAAGCATGTTTCTATTA+AGG - chr3_1:52976616-52976635 Msa0362130:intron 25.0%
!! TACATCTTTTATCTTGTTCA+AGG + chr3_1:52977095-52977114 None:intergenic 25.0%
! TACTCTACATCATCAAAAAA+AGG + chr3_1:52977193-52977212 None:intergenic 25.0%
AAGATGCATCTTGTTGATAT+GGG + chr3_1:52972703-52972722 None:intergenic 30.0%
! AACAAGATGCATCTTCTTTT+CGG - chr3_1:52972708-52972727 Msa0362130:CDS 30.0%
AAGATGCATCTTGTTGATAT+GGG + chr3_1:52972703-52972722 None:intergenic 30.0%
! AACAAGATGCATCTTCTTTT+CGG - chr3_1:52972708-52972727 Msa0362130:CDS 30.0%
TCTAATGTTTATGGAGGTTT+CGG + chr3_1:52973468-52973487 None:intergenic 30.0%
GAAAGAAACGTTTAATCACT+TGG + chr3_1:52973624-52973643 None:intergenic 30.0%
! TCCAATCAAGTTGCAAATAT+GGG + chr3_1:52973735-52973754 None:intergenic 30.0%
! ATCCAATCAAGTTGCAAATA+TGG + chr3_1:52973736-52973755 None:intergenic 30.0%
GCCGATTATTATGTATTTGA+AGG - chr3_1:52973874-52973893 Msa0362130:intron 30.0%
CTTATTGTGAAAAAGCAAAG+AGG - chr3_1:52973927-52973946 Msa0362130:intron 30.0%
!!! GTTGTGATGGTTTTAAAAAG+TGG - chr3_1:52974017-52974036 Msa0362130:intron 30.0%
!!! TGGTTTTAAAAAGTGGATAG+AGG - chr3_1:52974024-52974043 Msa0362130:intron 30.0%
TAGAGGAACTAGCTATTTAT+AGG - chr3_1:52974041-52974060 Msa0362130:intron 30.0%
AGAGGAACTAGCTATTTATA+GGG - chr3_1:52974042-52974061 Msa0362130:intron 30.0%
ATACAATCCTACTTGAATAG+AGG - chr3_1:52974065-52974084 Msa0362130:CDS 30.0%
!! ACTAGGTTTGTTATATCAGT+AGG + chr3_1:52974112-52974131 None:intergenic 30.0%
GTCATTGAAATAGATAACCA+TGG - chr3_1:52974363-52974382 Msa0362130:intron 30.0%
CAATAAAAAGAGCGGAAAAA+TGG - chr3_1:52974947-52974966 Msa0362130:intron 30.0%
!! CAAACTCTTAATTTGAGTTG+CGG - chr3_1:52975164-52975183 Msa0362130:intron 30.0%
GATTATTTGAAAAGAGAGAG+TGG + chr3_1:52975351-52975370 None:intergenic 30.0%
TATTAAACATATTACGCACG+CGG + chr3_1:52975785-52975804 None:intergenic 30.0%
TCTTGATCAAAGTATGACTA+TGG - chr3_1:52975830-52975849 Msa0362130:intron 30.0%
ATAACCTACTTATTGAGACT+TGG + chr3_1:52975955-52975974 None:intergenic 30.0%
!! TAAGATTTTAATAGTCGTCG+CGG - chr3_1:52975977-52975996 Msa0362130:intron 30.0%
!! TTTTTATGGCTCTACAACAT+AGG + chr3_1:52976063-52976082 None:intergenic 30.0%
TGTAGAGCCATAAAAATGTT+AGG - chr3_1:52976067-52976086 Msa0362130:intron 30.0%
! ATCGTGACCTAACATTTTTA+TGG + chr3_1:52976077-52976096 None:intergenic 30.0%
!!! TTACTTTTTGGTCTCTAAGT+TGG - chr3_1:52976190-52976209 Msa0362130:intron 30.0%
! AAATGTTTCTGAGTCTTTGT+CGG + chr3_1:52976285-52976304 None:intergenic 30.0%
TAAAGTCTTTCAATGATTGC+AGG + chr3_1:52976455-52976474 None:intergenic 30.0%
! GAAGTGGTCTAAGAAAATTT+TGG - chr3_1:52976646-52976665 Msa0362130:intron 30.0%
! TGGTCTAAGAAAATTTTGGA+AGG - chr3_1:52976650-52976669 Msa0362130:intron 30.0%
!! GGTCTAAGAAAATTTTGGAA+GGG - chr3_1:52976651-52976670 Msa0362130:intron 30.0%
!! TGCAGTAATGTTTTTGTCAA+TGG - chr3_1:52976725-52976744 Msa0362130:intron 30.0%
! GTTTTTGTCAATGGAAATAC+TGG - chr3_1:52976734-52976753 Msa0362130:intron 30.0%
TGAAACAGAAATAATGTACC+TGG + chr3_1:52976760-52976779 None:intergenic 30.0%
ACATCTTGAGATAAACAACA+TGG + chr3_1:52976795-52976814 None:intergenic 30.0%
ATGGTAGACATATACTCATT+TGG - chr3_1:52976968-52976987 Msa0362130:intron 30.0%
TGGAATGTTAGTATTAGAGA+TGG - chr3_1:52976988-52977007 Msa0362130:intron 30.0%
ACATTGTCACATTCACTATA+TGG + chr3_1:52977028-52977047 None:intergenic 30.0%
TGTTGCAAAGATATACAAGA+AGG - chr3_1:52977045-52977064 Msa0362130:intron 30.0%
TTTATCTTGTTCAAGGATTG+CGG + chr3_1:52977088-52977107 None:intergenic 30.0%
CATATGAGTCCTTATGCTTT+GGG + chr3_1:52972405-52972424 None:intergenic 35.0%
CATGGAATCAAAGTTGGATA+TGG + chr3_1:52972456-52972475 None:intergenic 35.0%
TGTTACAGTTTCTGATGTGT+TGG + chr3_1:52972487-52972506 None:intergenic 35.0%
GAAGATGCATCTTGTTGATA+TGG + chr3_1:52972704-52972723 None:intergenic 35.0%
GAAGATGCATCTTGTTGATA+TGG + chr3_1:52972704-52972723 None:intergenic 35.0%
GAAAGGTCTAATGTTTATGG+AGG + chr3_1:52973474-52973493 None:intergenic 35.0%
GGAGAAAGGTCTAATGTTTA+TGG + chr3_1:52973477-52973496 None:intergenic 35.0%
TCCCATATTTGCAACTTGAT+TGG - chr3_1:52973731-52973750 Msa0362130:intron 35.0%
!! GCAACAATTGGTGTCAAATT+CGG + chr3_1:52973785-52973804 None:intergenic 35.0%
TACATAATAATCGGCGACAT+GGG + chr3_1:52973869-52973888 None:intergenic 35.0%
ATACATAATAATCGGCGACA+TGG + chr3_1:52973870-52973889 None:intergenic 35.0%
GTTAGTTCCTCTATTCAAGT+AGG + chr3_1:52974075-52974094 None:intergenic 35.0%
TGTTAGCGCAATAAAAAGAG+CGG - chr3_1:52974939-52974958 Msa0362130:intron 35.0%
!! ACTAAATTTTAACACGGGAG+AGG - chr3_1:52975064-52975083 Msa0362130:intron 35.0%
TTTAACTGCACTCCGTAATT+TGG - chr3_1:52975261-52975280 Msa0362130:intron 35.0%
TTAACTGCACTCCGTAATTT+GGG - chr3_1:52975262-52975281 Msa0362130:intron 35.0%
TAGTAACAAGACCCAAATCA+AGG - chr3_1:52975527-52975546 Msa0362130:intron 35.0%
TCTCAATCAAACCTCGATTT+AGG + chr3_1:52975625-52975644 None:intergenic 35.0%
ATTTATATGTTGCGACACCA+GGG + chr3_1:52975657-52975676 None:intergenic 35.0%
AATTTATATGTTGCGACACC+AGG + chr3_1:52975658-52975677 None:intergenic 35.0%
!! TGGTGTCGCAACATATAAAT+TGG - chr3_1:52975657-52975676 Msa0362130:intron 35.0%
! GGTGTCGCAACATATAAATT+GGG - chr3_1:52975658-52975677 Msa0362130:intron 35.0%
CATACCAAGTCTCAATAAGT+AGG - chr3_1:52975948-52975967 Msa0362130:intron 35.0%
! GGCATCTAGAACAAAAAACA+TGG + chr3_1:52976242-52976261 None:intergenic 35.0%
!! GATGGATTTTGTTGAACACT+TGG + chr3_1:52976263-52976282 None:intergenic 35.0%
TTTGTTGAAACTGATCCAAC+CGG - chr3_1:52976302-52976321 Msa0362130:intron 35.0%
ATCGTATCTTCCATATCTTC+CGG + chr3_1:52976324-52976343 None:intergenic 35.0%
GGAAGATACGATGAATTACT+TGG - chr3_1:52976332-52976351 Msa0362130:intron 35.0%
AAGAAGGAATAGAAGTAGCA+TGG - chr3_1:52976396-52976415 Msa0362130:intron 35.0%
TCATTGCACTTTACAGTGTT+TGG - chr3_1:52976516-52976535 Msa0362130:intron 35.0%
TTTGTACAAGTGGGAATTTG+AGG - chr3_1:52976579-52976598 Msa0362130:intron 35.0%
TTGTACAAGTGGGAATTTGA+GGG - chr3_1:52976580-52976599 Msa0362130:intron 35.0%
!! CTATTAAGGCTTTGAAGAAG+TGG - chr3_1:52976630-52976649 Msa0362130:intron 35.0%
AGGTCTCTATGAATGATACA+AGG + chr3_1:52976701-52976720 None:intergenic 35.0%
CAAAAACATTACTGCAGTTG+AGG + chr3_1:52976721-52976740 None:intergenic 35.0%
! TAGGTTAAGATTGGTGACTT+AGG - chr3_1:52976848-52976867 Msa0362130:intron 35.0%
! TAAGATTGGTGACTTAGGTT+TGG - chr3_1:52976853-52976872 Msa0362130:intron 35.0%
TAATCCTCTTCATATAGCTC+TGG + chr3_1:52976941-52976960 None:intergenic 35.0%
TGAAGAGGATTACACAGAAA+TGG - chr3_1:52976949-52976968 Msa0362130:intron 35.0%
ATATACAAGAAGGTGACTTC+AGG - chr3_1:52977055-52977074 Msa0362130:intron 35.0%
CCATATGAGTCCTTATGCTT+TGG + chr3_1:52972406-52972425 None:intergenic 40.0%
CCAAAGCATAAGGACTCATA+TGG - chr3_1:52972403-52972422 Msa0362130:CDS 40.0%
GGAATCAAAGTTGGATATGG+TGG + chr3_1:52972453-52972472 None:intergenic 40.0%
GAGACTCATGGAATCAAAGT+TGG + chr3_1:52972462-52972481 None:intergenic 40.0%
TAAGAGGAACCGAATCACAT+CGG - chr3_1:52972600-52972619 Msa0362130:CDS 40.0%
CATGTAGTCTCATACCTACA+CGG + chr3_1:52972645-52972664 None:intergenic 40.0%
GTATGAGACTACATGGTTGA+AGG - chr3_1:52972650-52972669 Msa0362130:CDS 40.0%
GCTTAACTGTGGAGTTCTTA+TGG + chr3_1:52972743-52972762 None:intergenic 40.0%
!! AAAAGACTCGTGTTGGTTTG+TGG - chr3_1:52972846-52972865 Msa0362130:intron 40.0%
!! AAAGACTCGTGTTGGTTTGT+GGG - chr3_1:52972847-52972866 Msa0362130:intron 40.0%
TAAGAGGAACCGAATCACAT+CGG - chr3_1:52972600-52972619 Msa0362130:CDS 40.0%
CATGTAGTCTCATACCTACA+CGG + chr3_1:52972645-52972664 None:intergenic 40.0%
GTATGAGACTACATGGTTGA+AGG - chr3_1:52972650-52972669 Msa0362130:CDS 40.0%
GCTTAACTGTGGAGTTCTTA+TGG + chr3_1:52972743-52972762 None:intergenic 40.0%
!! AAAAGACTCGTGTTGGTTTG+TGG - chr3_1:52972846-52972865 Msa0362130:intron 40.0%
!! AAAGACTCGTGTTGGTTTGT+GGG - chr3_1:52972847-52972866 Msa0362130:intron 40.0%
ATGTTACAGAAACCCTAACC+TGG - chr3_1:52973378-52973397 Msa0362130:intron 40.0%
AAGAAATTCGCGAAGGAGAA+AGG + chr3_1:52973491-52973510 None:intergenic 40.0%
AGAAGGTAAGAAATTCGCGA+AGG + chr3_1:52973498-52973517 None:intergenic 40.0%
CGCGAATTTCTTACCTTCTT+CGG - chr3_1:52973499-52973518 Msa0362130:intron 40.0%
CGTTTAATCACTTGGCTACT+TGG + chr3_1:52973616-52973635 None:intergenic 40.0%
GAAAAAGCAAAGAGGGAACA+AGG - chr3_1:52973935-52973954 Msa0362130:intron 40.0%
GAGTATAGAGAATGAAAGCG+AGG - chr3_1:52973993-52974012 Msa0362130:intron 40.0%
CGTTAGCGCAATTAACAGAT+CGG - chr3_1:52974433-52974452 Msa0362130:intron 40.0%
GTCGTTGAAAAGTGAAGCTT+CGG + chr3_1:52975373-52975392 None:intergenic 40.0%
! ACTTTTCAACGACATAGCCT+CGG - chr3_1:52975380-52975399 Msa0362130:intron 40.0%
CAAACCTCGATTTAGGTCTA+GGG + chr3_1:52975618-52975637 None:intergenic 40.0%
TCAAACCTCGATTTAGGTCT+AGG + chr3_1:52975619-52975638 None:intergenic 40.0%
GATTGAGACATCAAAAACCC+TGG - chr3_1:52975637-52975656 Msa0362130:intron 40.0%
! ATTTATAGCGGAAACGGTAG+TGG - chr3_1:52975759-52975778 Msa0362130:intron 40.0%
TATCTTCCATATCTTCCGGT+TGG + chr3_1:52976320-52976339 None:intergenic 40.0%
TACGATGAATTACTTGGAGC+TGG - chr3_1:52976338-52976357 Msa0362130:intron 40.0%
TTACAGTGTTTGGAGAGACA+AGG - chr3_1:52976526-52976545 Msa0362130:intron 40.0%
CACACTGAATTTCATCACAG+AGG - chr3_1:52976556-52976575 Msa0362130:intron 40.0%
ATCACAGAGGTTTGTACAAG+TGG - chr3_1:52976569-52976588 Msa0362130:intron 40.0%
TCACAGAGGTTTGTACAAGT+GGG - chr3_1:52976570-52976589 Msa0362130:intron 40.0%
TTAGGTTTGGCAGCAATTGT+GGG - chr3_1:52976866-52976885 Msa0362130:intron 40.0%
TTTAGCAATTCCTCAGCAGA+AGG + chr3_1:52977166-52977185 None:intergenic 40.0%
TTCTGCTGAGGAATTGCTAA+AGG - chr3_1:52977165-52977184 Msa0362130:intron 40.0%
CAGCTTCTACCCAAAGCATA+AGG - chr3_1:52972393-52972412 Msa0362130:CDS 45.0%
GATGTGTTGGATGAGACTCA+TGG + chr3_1:52972474-52972493 None:intergenic 45.0%
AAACTGTAACACCCACAACG+TGG - chr3_1:52972496-52972515 Msa0362130:CDS 45.0%
GATATCGAAAGCCACGTTGT+GGG + chr3_1:52972510-52972529 None:intergenic 45.0%
AACCTTTCGTATCCAACTGG+CGG + chr3_1:52972533-52972552 None:intergenic 45.0%
TCGGTTCCTCTTATTACCGT+GGG + chr3_1:52972593-52972612 None:intergenic 45.0%
TTCGGTTCCTCTTATTACCG+TGG + chr3_1:52972594-52972613 None:intergenic 45.0%
CCTCTCATTCCGATGTGATT+CGG + chr3_1:52972612-52972631 None:intergenic 45.0%
CGAATCACATCGGAATGAGA+GGG - chr3_1:52972610-52972629 Msa0362130:CDS 45.0%
CGTGTAGGTATGAGACTACA+TGG - chr3_1:52972643-52972662 Msa0362130:CDS 45.0%
GCTTGGAGTAGTACTAGGAT+GGG - chr3_1:52972770-52972789 Msa0362130:intron 45.0%
CATGCTGAAAAGACTCGTGT+TGG - chr3_1:52972839-52972858 Msa0362130:intron 45.0%
!! AAGACTCGTGTTGGTTTGTG+GGG - chr3_1:52972848-52972867 Msa0362130:intron 45.0%
!! TGTTGGTTTGTGGGGTTAGT+CGG - chr3_1:52972856-52972875 Msa0362130:intron 45.0%
TAACATCCCAGACTGCTTTC+AGG + chr3_1:52972886-52972905 None:intergenic 45.0%
! GCAGTCTGGGATGTTACAAA+TGG - chr3_1:52972890-52972909 Msa0362130:intron 45.0%
GATATCGAAAGCCACGTTGT+GGG + chr3_1:52972510-52972529 None:intergenic 45.0%
AACCTTTCGTATCCAACTGG+CGG + chr3_1:52972533-52972552 None:intergenic 45.0%
TCGGTTCCTCTTATTACCGT+GGG + chr3_1:52972593-52972612 None:intergenic 45.0%
TTCGGTTCCTCTTATTACCG+TGG + chr3_1:52972594-52972613 None:intergenic 45.0%
CCTCTCATTCCGATGTGATT+CGG + chr3_1:52972612-52972631 None:intergenic 45.0%
CGAATCACATCGGAATGAGA+GGG - chr3_1:52972610-52972629 Msa0362130:CDS 45.0%
CGTGTAGGTATGAGACTACA+TGG - chr3_1:52972643-52972662 Msa0362130:CDS 45.0%
GCTTGGAGTAGTACTAGGAT+GGG - chr3_1:52972770-52972789 Msa0362130:intron 45.0%
CATGCTGAAAAGACTCGTGT+TGG - chr3_1:52972839-52972858 Msa0362130:intron 45.0%
!! AAGACTCGTGTTGGTTTGTG+GGG - chr3_1:52972848-52972867 Msa0362130:intron 45.0%
!! TGTTGGTTTGTGGGGTTAGT+CGG - chr3_1:52972856-52972875 Msa0362130:intron 45.0%
TAACATCCCAGACTGCTTTC+AGG + chr3_1:52972886-52972905 None:intergenic 45.0%
TTGCAAATATGGGACACAGC+AGG + chr3_1:52973725-52973744 None:intergenic 45.0%
AAGCAAAGAGGGAACAAGGA+AGG - chr3_1:52973939-52973958 Msa0362130:intron 45.0%
ATGAAAGCGAGGAGTTGTGA+TGG - chr3_1:52974004-52974023 Msa0362130:intron 45.0%
TAACACGGGAGAGGTTTAGT+AGG - chr3_1:52975073-52975092 Msa0362130:intron 45.0%
GGGAGAGGTTTAGTAGGTTA+CGG - chr3_1:52975079-52975098 Msa0362130:intron 45.0%
AGAGAGAGTGGAATGAACTG+AGG + chr3_1:52975339-52975358 None:intergenic 45.0%
TACCATGAAGTAGACAACCG+AGG + chr3_1:52975400-52975419 None:intergenic 45.0%
TGAACCCTAGACCTAAATCG+AGG - chr3_1:52975611-52975630 Msa0362130:intron 45.0%
GTTTCTGAGTCTTTGTCGGA+TGG + chr3_1:52976281-52976300 None:intergenic 45.0%
ACTGATCCAACCGGAAGATA+TGG - chr3_1:52976311-52976330 Msa0362130:intron 45.0%
! GTGGGAATTTGAGGGAGTAT+AGG - chr3_1:52976588-52976607 Msa0362130:intron 45.0%
TGTCAATGGAAATACTGGCC+AGG - chr3_1:52976739-52976758 Msa0362130:intron 45.0%
CTTAGGTTTGGCAGCAATTG+TGG - chr3_1:52976865-52976884 Msa0362130:intron 45.0%
CATTCAGCGCATTCAGTTCT+AGG - chr3_1:52976896-52976915 Msa0362130:intron 45.0%
TCTAGGCACACCGGAATTTA+TGG - chr3_1:52976913-52976932 Msa0362130:intron 45.0%
!! AGCTCTGGTGCCATAAATTC+CGG + chr3_1:52976926-52976945 None:intergenic 45.0%
!! AAAAGTGTCTCGCTCAACCA+AGG - chr3_1:52977134-52977153 Msa0362130:intron 45.0%
! AAAGTGTCTCGCTCAACCAA+GGG - chr3_1:52977135-52977154 Msa0362130:intron 45.0%
!!! TAATATTTTAATATTTATAG+CGG - chr3_1:52975747-52975766 Msa0362130:intron 5.0%
!!! ATTATTATTATTTTACTTTT+TGG - chr3_1:52976178-52976197 Msa0362130:intron 5.0%
TGGCTATCCCTAACTTCTGC+TGG - chr3_1:52972423-52972442 Msa0362130:CDS 50.0%
CTATCCCTAACTTCTGCTGG+TGG - chr3_1:52972426-52972445 Msa0362130:CDS 50.0%
TGGACCACCAGCAGAAGTTA+GGG + chr3_1:52972433-52972452 None:intergenic 50.0%
GGATATCGAAAGCCACGTTG+TGG + chr3_1:52972511-52972530 None:intergenic 50.0%
ACCTTTCGTATCCAACTGGC+GGG + chr3_1:52972532-52972551 None:intergenic 50.0%
GGGAACCTTTCGTATCCAAC+TGG + chr3_1:52972536-52972555 None:intergenic 50.0%
TATCCGTAAGGATGACCCCA+CGG - chr3_1:52972574-52972593 Msa0362130:CDS 50.0%
TTACCGTGGGGTCATCCTTA+CGG + chr3_1:52972580-52972599 None:intergenic 50.0%
GATGACCCCACGGTAATAAG+AGG - chr3_1:52972584-52972603 Msa0362130:CDS 50.0%
CGGTTCCTCTTATTACCGTG+GGG + chr3_1:52972592-52972611 None:intergenic 50.0%
CCGAATCACATCGGAATGAG+AGG - chr3_1:52972609-52972628 Msa0362130:CDS 50.0%
ACTCCACAGTTAAGCGTGCT+TGG - chr3_1:52972748-52972767 Msa0362130:intron 50.0%
AAGCCAAGCACGCTTAACTG+TGG + chr3_1:52972754-52972773 None:intergenic 50.0%
ACAGTTAAGCGTGCTTGGCT+TGG - chr3_1:52972753-52972772 Msa0362130:intron 50.0%
!! GCTTGGCTTGGAGTAGTACT+AGG - chr3_1:52972765-52972784 Msa0362130:intron 50.0%
GGCTTGGAGTAGTACTAGGA+TGG - chr3_1:52972769-52972788 Msa0362130:intron 50.0%
TACTAGGATGGGTGACCTAC+CGG - chr3_1:52972781-52972800 Msa0362130:intron 50.0%
ATGCTTACCGGGAAACTTCC+CGG + chr3_1:52972803-52972822 None:intergenic 50.0%
TCCTCACTCACATGCTTACC+GGG + chr3_1:52972814-52972833 None:intergenic 50.0%
GTCCTCACTCACATGCTTAC+CGG + chr3_1:52972815-52972834 None:intergenic 50.0%
GGCAATCCTGAAAGCAGTCT+GGG - chr3_1:52972877-52972896 Msa0362130:intron 50.0%
GGATATCGAAAGCCACGTTG+TGG + chr3_1:52972511-52972530 None:intergenic 50.0%
ACCTTTCGTATCCAACTGGC+GGG + chr3_1:52972532-52972551 None:intergenic 50.0%
GGGAACCTTTCGTATCCAAC+TGG + chr3_1:52972536-52972555 None:intergenic 50.0%
TATCCGTAAGGATGACCCCA+CGG - chr3_1:52972574-52972593 Msa0362130:CDS 50.0%
TTACCGTGGGGTCATCCTTA+CGG + chr3_1:52972580-52972599 None:intergenic 50.0%
GATGACCCCACGGTAATAAG+AGG - chr3_1:52972584-52972603 Msa0362130:CDS 50.0%
CGGTTCCTCTTATTACCGTG+GGG + chr3_1:52972592-52972611 None:intergenic 50.0%
CCGAATCACATCGGAATGAG+AGG - chr3_1:52972609-52972628 Msa0362130:CDS 50.0%
ACTCCACAGTTAAGCGTGCT+TGG - chr3_1:52972748-52972767 Msa0362130:intron 50.0%
AAGCCAAGCACGCTTAACTG+TGG + chr3_1:52972754-52972773 None:intergenic 50.0%
ACAGTTAAGCGTGCTTGGCT+TGG - chr3_1:52972753-52972772 Msa0362130:intron 50.0%
!! GCTTGGCTTGGAGTAGTACT+AGG - chr3_1:52972765-52972784 Msa0362130:intron 50.0%
GGCTTGGAGTAGTACTAGGA+TGG - chr3_1:52972769-52972788 Msa0362130:intron 50.0%
TACTAGGATGGGTGACCTAC+CGG - chr3_1:52972781-52972800 Msa0362130:intron 50.0%
ATGCTTACCGGGAAACTTCC+CGG + chr3_1:52972803-52972822 None:intergenic 50.0%
TCCTCACTCACATGCTTACC+GGG + chr3_1:52972814-52972833 None:intergenic 50.0%
GTCCTCACTCACATGCTTAC+CGG + chr3_1:52972815-52972834 None:intergenic 50.0%
GGCAATCCTGAAAGCAGTCT+GGG - chr3_1:52972877-52972896 Msa0362130:intron 50.0%
TGACACCAATTGTTGCGTCG+TGG - chr3_1:52973789-52973808 Msa0362130:intron 50.0%
ATAATCGGCGACATGGGAGT+CGG + chr3_1:52973863-52973882 None:intergenic 50.0%
AGCCTCGGTTGTCTACTTCA+TGG - chr3_1:52975395-52975414 Msa0362130:intron 50.0%
!! GCATTCAGTTCTAGGCACAC+CGG - chr3_1:52976904-52976923 Msa0362130:intron 50.0%
GGCACCAGAGCTATATGAAG+AGG - chr3_1:52976934-52976953 Msa0362130:intron 50.0%
GTGGACCACCAGCAGAAGTT+AGG + chr3_1:52972434-52972453 None:intergenic 55.0%
GCTTTCGATATCCCGCCAGT+TGG - chr3_1:52972518-52972537 Msa0362130:CDS 55.0%
TCCCGCCAGTTGGATACGAA+AGG - chr3_1:52972528-52972547 Msa0362130:CDS 55.0%
TACGAAAGGTTCCCGCCAGT+TGG - chr3_1:52972542-52972561 Msa0362130:CDS 55.0%
AAGGTTCCCGCCAGTTGGAA+CGG - chr3_1:52972547-52972566 Msa0362130:CDS 55.0%
ATAGTGCCCGTTCCAACTGG+CGG + chr3_1:52972557-52972576 None:intergenic 55.0%
TGGAACGGGCACTATCCGTA+AGG - chr3_1:52972562-52972581 Msa0362130:CDS 55.0%
TCGGAATGAGAGGGATCCAG+AGG - chr3_1:52972619-52972638 Msa0362130:CDS 55.0%
TCTCATACCTACACGGCCTC+TGG + chr3_1:52972638-52972657 None:intergenic 55.0%
ACTAGGATGGGTGACCTACC+GGG - chr3_1:52972782-52972801 Msa0362130:intron 55.0%
TGACCTACCGGGAAGTTTCC+CGG - chr3_1:52972793-52972812 Msa0362130:intron 55.0%
TTACCGGGAAACTTCCCGGT+AGG + chr3_1:52972799-52972818 None:intergenic 55.0%
TCCCGGTAAGCATGTGAGTG+AGG - chr3_1:52972810-52972829 Msa0362130:intron 55.0%
CGGCAATCCTGAAAGCAGTC+TGG - chr3_1:52972876-52972895 Msa0362130:intron 55.0%
AGAGCAGACCTCTCCCAGTA+CGG - chr3_1:52972917-52972936 Msa0362130:intron 55.0%
TCTCCCAGTACGGTGTGGTT+CGG - chr3_1:52972927-52972946 Msa0362130:intron 55.0%
GGCATGTAACACCCACAACG+TGG - chr3_1:52972974-52972993 Msa0362130:intron 55.0%
GCTTTCGATATCCCGCCAGT+TGG - chr3_1:52972518-52972537 Msa0362130:CDS 55.0%
TCCCGCCAGTTGGATACGAA+AGG - chr3_1:52972528-52972547 Msa0362130:CDS 55.0%
TACGAAAGGTTCCCGCCAGT+TGG - chr3_1:52972542-52972561 Msa0362130:CDS 55.0%
AAGGTTCCCGCCAGTTGGAA+CGG - chr3_1:52972547-52972566 Msa0362130:CDS 55.0%
ATAGTGCCCGTTCCAACTGG+CGG + chr3_1:52972557-52972576 None:intergenic 55.0%
TGGAACGGGCACTATCCGTA+AGG - chr3_1:52972562-52972581 Msa0362130:CDS 55.0%
TCGGAATGAGAGGGATCCAG+AGG - chr3_1:52972619-52972638 Msa0362130:CDS 55.0%
TCTCATACCTACACGGCCTC+TGG + chr3_1:52972638-52972657 None:intergenic 55.0%
ACTAGGATGGGTGACCTACC+GGG - chr3_1:52972782-52972801 Msa0362130:intron 55.0%
TGACCTACCGGGAAGTTTCC+CGG - chr3_1:52972793-52972812 Msa0362130:intron 55.0%
TTACCGGGAAACTTCCCGGT+AGG + chr3_1:52972799-52972818 None:intergenic 55.0%
TCCCGGTAAGCATGTGAGTG+AGG - chr3_1:52972810-52972829 Msa0362130:intron 55.0%
CGGCAATCCTGAAAGCAGTC+TGG - chr3_1:52972876-52972895 Msa0362130:intron 55.0%
!! CGTGTGGTGAGTACCGAAGA+AGG + chr3_1:52973515-52973534 None:intergenic 55.0%
CGATCTCGCTGGTAATCGTG+TGG + chr3_1:52973531-52973550 None:intergenic 55.0%
GGAAACAAGAGCGATCTCGC+TGG + chr3_1:52973542-52973561 None:intergenic 55.0%
CGCTTCCACGACGCAACAAT+TGG + chr3_1:52973797-52973816 None:intergenic 55.0%
!! CGTCGTGGAAGCGTTGAAAG+CGG - chr3_1:52973804-52973823 Msa0362130:intron 55.0%
TCAGCAGAAGGTCTAGCCCT+TGG + chr3_1:52977154-52977173 None:intergenic 55.0%
AAGGGCTAGACCTTCTGCTG+AGG - chr3_1:52977153-52977172 Msa0362130:intron 55.0%
AGGTTCCCGCCAGTTGGAAC+GGG - chr3_1:52972548-52972567 Msa0362130:CDS 60.0%
TAGTGCCCGTTCCAACTGGC+GGG + chr3_1:52972556-52972575 None:intergenic 60.0%
CGGATAGTGCCCGTTCCAAC+TGG + chr3_1:52972560-52972579 None:intergenic 60.0%
AGACCTCTCCCAGTACGGTG+TGG - chr3_1:52972922-52972941 Msa0362130:intron 60.0%
GAACCACACCGTACTGGGAG+AGG + chr3_1:52972928-52972947 None:intergenic 60.0%
CTCCCAGTACGGTGTGGTTC+GGG - chr3_1:52972928-52972947 Msa0362130:intron 60.0%
TCCCAGTACGGTGTGGTTCG+GGG - chr3_1:52972929-52972948 Msa0362130:intron 60.0%
TCCCCGAACCACACCGTACT+GGG + chr3_1:52972933-52972952 None:intergenic 60.0%
AGGTTCCCGCCAGTTGGAAC+GGG - chr3_1:52972548-52972567 Msa0362130:CDS 60.0%
TAGTGCCCGTTCCAACTGGC+GGG + chr3_1:52972556-52972575 None:intergenic 60.0%
CGGATAGTGCCCGTTCCAAC+TGG + chr3_1:52972560-52972579 None:intergenic 60.0%
GAGGGATCCAGAGGCCGTGT+AGG - chr3_1:52972628-52972647 Msa0362130:CDS 65.0%
GTCCCCGAACCACACCGTAC+TGG + chr3_1:52972934-52972953 None:intergenic 65.0%
! GTGTGGTTCGGGGACGAACC+AGG - chr3_1:52972939-52972958 Msa0362130:intron 65.0%
! TGGTTCGGGGACGAACCAGG+CGG - chr3_1:52972942-52972961 Msa0362130:intron 65.0%
ACGAACCAGGCGGAAGCTGG+TGG - chr3_1:52972952-52972971 Msa0362130:intron 65.0%
CGAACCAGGCGGAAGCTGGT+GGG - chr3_1:52972953-52972972 Msa0362130:intron 65.0%
GAGGGATCCAGAGGCCGTGT+AGG - chr3_1:52972628-52972647 Msa0362130:CDS 65.0%
GGGACGAACCAGGCGGAAGC+TGG - chr3_1:52972949-52972968 Msa0362130:intron 70.0%
CATGCCCACCAGCTTCCGCC+TGG + chr3_1:52972960-52972979 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 52972352 52977240 52972352 ID=Msa0362130;Name=Msa0362130
chr3_1 mRNA 52972352 52977240 52972352 ID=Msa0362130-mRNA-1;Parent=Msa0362130;Name=Msa0362130-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|0.2|0.75|0.8|5|0|155
chr3_1 exon 52977233 52977240 52977233 ID=Msa0362130-mRNA-1:exon:9604;Parent=Msa0362130-mRNA-1
chr3_1 exon 52974044 52974098 52974044 ID=Msa0362130-mRNA-1:exon:9603;Parent=Msa0362130-mRNA-1
chr3_1 exon 52974005 52974011 52974005 ID=Msa0362130-mRNA-1:exon:9602;Parent=Msa0362130-mRNA-1
chr3_1 exon 52973818 52973825 52973818 ID=Msa0362130-mRNA-1:exon:9601;Parent=Msa0362130-mRNA-1
chr3_1 exon 52972352 52972741 52972352 ID=Msa0362130-mRNA-1:exon:9600;Parent=Msa0362130-mRNA-1
chr3_1 CDS 52977233 52977240 52977233 ID=Msa0362130-mRNA-1:cds;Parent=Msa0362130-mRNA-1
chr3_1 CDS 52974044 52974098 52974044 ID=Msa0362130-mRNA-1:cds;Parent=Msa0362130-mRNA-1
chr3_1 CDS 52974005 52974011 52974005 ID=Msa0362130-mRNA-1:cds;Parent=Msa0362130-mRNA-1
chr3_1 CDS 52973818 52973825 52973818 ID=Msa0362130-mRNA-1:cds;Parent=Msa0362130-mRNA-1
chr3_1 CDS 52972352 52972741 52972352 ID=Msa0362130-mRNA-1:cds;Parent=Msa0362130-mRNA-1
Gene Sequence

>Msa0362130

ATGAATATAACTGTATTCAATTTAGGTTTTAATTGTTGTCATAGTAACAAGACCCAAATCAAGTGTGTTACGGAAACGGTTAAGATTGGTGACTTAGGTTTGGCAGCAATTGTGGGAAAGAATCATTCAGCGCATTCAGTTCTAGGCACACCGGAATTTATGGCACCAGAGCTATATGAAGAGGATTACACAGAAATGGTAGACATATACTCATTTGGAATGTTAGTATTAGAGATGGTGACACTAGAGATTCCATATAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGACTTCAGGTGTGAGACCGCAATCCTTGAACAAGATAAAAGATGTAGAAGTGAAGACTTTCATCGAAAAGTGTCTCGCTCAACCAAGGGCTAGACCTTCTGCTGAGGAATTGCTAAAGGATCCTTTTTTTGATGATGTAGAGTACGATGAAAACGACGATGTTGATTACTAA
Protein sequence

>Msa0362130

MNITVFNLGFNCCHSNKTQIKCVTETVKIGDLGLAAIVGKNHSAHSVLGTPEFMAPELYEEDYTEMVDIYSFGMLVLEMVTLEIPYSECDNVAKIYKKVTSGVRPQSLNKIKDVEVKTFIEKCLAQPRARPSAEELLKDPFFDDVEYDENDDVDY*